BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028564
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 80 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 137
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 138 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 170
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 70 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 127
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 128 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 160
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 63 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 120
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 121 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 153
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 81 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 138
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 139 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 171
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 62 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 119
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 120 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 152
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 78 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 135
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 136 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 168
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 66 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 123
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 124 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 156
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 63 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 120
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 121 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 153
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 60 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 117
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 118 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 150
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKP--RRGCFE--- 168
+G ++KE V I HC QC S +T + K +PG N+ LN + + G +E
Sbjct: 84 NGIQNKEAEVRIFHCCQCTSVETVTELTE--FAKAIPGFANLDLNDQVTLLKYGVYEAIF 141
Query: 169 ------IREDG-----GEKFIS---LLDMKRPF 187
+ +DG G FI+ L +++PF
Sbjct: 142 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPF 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,907,601
Number of Sequences: 62578
Number of extensions: 129397
Number of successful extensions: 211
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 11
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)