BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028564
         (207 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis GN=SELH PE=2 SV=2
          Length = 122

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 113 AFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI--- 169
           A  G+  +E TVVIEHC     +   A  +   L    P + V +NP KPRRG FE+   
Sbjct: 25  ANSGEGMEETTVVIEHCTSURVYGXNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL 84

Query: 170 REDGGEKFISLLDMKRPFKPMKDLDMDEVVSDI 202
           R DG    +     K P + +K  +  EVV ++
Sbjct: 85  RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEEL 117


>sp|Q8IZQ5|SELH_HUMAN Selenoprotein H OS=Homo sapiens GN=SELH PE=1 SV=2
          Length = 122

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 113 AFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI--- 169
           A  G+  +E TVVIEHC     +   A  +   L    P + V +NP KPRRG FE+   
Sbjct: 25  ANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL 84

Query: 170 REDGGEKFISLLDMKRPFKPMKDLDMDEVVSDI 202
           R DG    +     K P + +K  +  EVV ++
Sbjct: 85  RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEEL 117


>sp|Q3UQA7|SELH_MOUSE Selenoprotein H OS=Mus musculus GN=Selh PE=2 SV=2
          Length = 116

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 123 TVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI 169
           TVVIEHC     +   A  +   L+   P + V +NP KPRRG FE+
Sbjct: 29  TVVIEHCTSURVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEV 75


>sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila
            melanogaster GN=trx PE=1 SV=4
          Length = 3726

 Score = 35.8 bits (81), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 37   SNLADSSVELAKAELPTKNKKAKATGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETE 96
            SN AD  +  A+A  P+  KK       N K++KE VK  E+ E      Q    +    
Sbjct: 964  SNAADQKLAAAEAISPSLTKK-------NSKQEKEKVKESEQSEKLLSPTQAGTKKSGAA 1016

Query: 97   EAE-EEVEPDKEEA 109
            EA+ EEV+P KEEA
Sbjct: 1017 EAQVEEVQPQKEEA 1030


>sp|Q9JKR6|HYOU1_MOUSE Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1
          Length = 999

 Score = 31.6 bits (70), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 57  KAKATGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEP--ETEEAEEEVEPDKEEAAGDAF 114
           KAK T  + + K K   +AE  + A     +E V+ P  +TEEA+  +EPDKEE   +  
Sbjct: 908 KAKFTKPRPRPKDKNGTRAEPPLNASAGDQEEKVIPPAGQTEEAKPILEPDKEETGTEPA 967

Query: 115 DGD 117
           D +
Sbjct: 968 DSE 970


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.127    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,997,479
Number of Sequences: 539616
Number of extensions: 3358087
Number of successful extensions: 49851
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 1572
Number of HSP's that attempted gapping in prelim test: 31860
Number of HSP's gapped (non-prelim): 11374
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)