Query 028564
Match_columns 207
No_of_seqs 70 out of 72
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 22:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljk_A Protein C17ORF37; MIEN1 99.6 6E-17 2.1E-21 127.7 2.7 76 121-206 24-99 (117)
2 2npb_A Selenoprotein W; struct 99.6 2.8E-15 9.6E-20 114.1 8.2 78 121-206 2-80 (96)
3 2fa8_A Hypothetical protein AT 99.6 2.1E-15 7.1E-20 116.8 5.3 76 121-206 7-84 (105)
4 2oka_A Hypothetical protein; P 99.5 1.1E-14 3.7E-19 112.9 6.6 76 121-206 5-82 (104)
5 2p0g_A Selenoprotein W-related 99.5 2E-14 6.8E-19 111.5 5.6 76 121-206 3-80 (105)
6 3dex_A SAV_2001; alpha-beta pr 99.4 1.5E-13 5.3E-18 107.2 6.2 78 118-206 9-88 (107)
7 2ojl_A Hypothetical protein; B 99.4 2.5E-13 8.4E-18 106.2 5.7 76 121-206 8-85 (108)
8 3fry_A Probable copper-exporti 74.8 6.4 0.00022 25.5 5.1 34 119-160 4-40 (73)
9 2dm9_A V-type ATP synthase sub 66.4 28 0.00095 26.6 7.8 56 123-181 121-176 (198)
10 2a2p_A Selenoprotein M, SELM p 53.4 13 0.00045 29.6 3.9 58 122-183 15-77 (129)
11 3gyk_A 27KDA outer membrane pr 44.2 18 0.00063 26.7 3.3 35 121-159 22-60 (175)
12 4a4j_A Pacszia, cation-transpo 41.4 60 0.0021 19.9 6.3 32 122-160 4-38 (69)
13 4dvc_A Thiol:disulfide interch 38.9 27 0.00092 25.6 3.4 31 124-157 24-58 (184)
14 2dj1_A Protein disulfide-isome 38.6 23 0.00077 24.8 2.9 33 127-159 44-77 (140)
15 1z6m_A Conserved hypothetical 37.7 27 0.00093 25.8 3.3 38 121-159 27-68 (175)
16 3bci_A Disulfide bond protein 34.7 27 0.00093 26.2 3.0 28 129-159 23-53 (186)
17 3tco_A Thioredoxin (TRXA-1); d 29.3 26 0.00089 23.0 1.8 71 124-207 28-109 (109)
18 3gmf_A Protein-disulfide isome 28.9 36 0.0012 27.2 2.9 38 119-159 13-57 (205)
19 3gn3_A Putative protein-disulf 28.2 27 0.00092 27.3 2.0 35 122-159 15-54 (182)
20 1mek_A Protein disulfide isome 28.0 32 0.0011 22.8 2.1 36 124-159 31-67 (120)
21 3h93_A Thiol:disulfide interch 27.1 42 0.0015 25.2 2.9 34 119-156 23-61 (192)
22 2djj_A PDI, protein disulfide- 27.1 1.4E+02 0.0049 19.9 7.9 79 125-206 33-116 (121)
23 3ph9_A Anterior gradient prote 26.1 1.9E+02 0.0065 22.0 6.5 79 127-207 54-145 (151)
24 2a4h_A Selenoprotein SEP15; re 25.6 32 0.0011 27.4 1.9 37 121-160 20-60 (126)
25 3hcz_A Possible thiol-disulfid 25.5 1.6E+02 0.0056 20.0 6.6 36 122-159 32-72 (148)
26 1sen_A Thioredoxin-like protei 25.3 90 0.0031 23.3 4.4 82 125-206 54-147 (164)
27 3uvt_A Thioredoxin domain-cont 24.8 21 0.00071 23.6 0.6 36 124-159 28-64 (111)
28 3idv_A Protein disulfide-isome 24.4 70 0.0024 24.3 3.7 35 125-159 155-190 (241)
29 1nho_A Probable thioredoxin; b 24.4 43 0.0015 21.0 2.1 21 127-147 11-31 (85)
30 3iwl_A Copper transport protei 24.0 40 0.0014 21.3 1.9 26 128-160 11-36 (68)
31 2dj3_A Protein disulfide-isome 22.7 68 0.0023 22.1 3.1 32 127-159 35-67 (133)
32 1xhj_A Nitrogen fixation prote 22.3 1E+02 0.0034 22.6 4.0 36 121-156 37-76 (88)
33 3gha_A Disulfide bond formatio 22.2 49 0.0017 26.0 2.4 37 120-159 28-71 (202)
34 3dxs_X Copper-transporting ATP 21.5 91 0.0031 19.4 3.3 32 122-160 4-38 (74)
35 1fo5_A Thioredoxin; disulfide 21.3 59 0.002 20.4 2.3 22 125-146 10-31 (85)
36 2o8v_B Thioredoxin 1; disulfid 21.1 1.6E+02 0.0056 20.6 4.9 22 126-147 49-70 (128)
37 1kvi_A Copper-transporting ATP 21.0 1.3E+02 0.0046 18.5 4.0 36 117-159 5-43 (79)
38 1ilo_A Conserved hypothetical 20.8 69 0.0024 19.9 2.5 26 122-147 4-29 (77)
39 3f4s_A Alpha-DSBA1, putative u 20.6 61 0.0021 26.2 2.8 39 120-159 38-81 (226)
40 3f9u_A Putative exported cytoc 20.5 2.5E+02 0.0085 20.3 6.6 30 128-159 58-90 (172)
41 4euy_A Uncharacterized protein 20.0 92 0.0031 20.7 3.2 26 125-154 26-51 (105)
42 2dml_A Protein disulfide-isome 20.0 1.1E+02 0.0036 21.0 3.6 76 125-206 43-123 (130)
No 1
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=99.63 E-value=6e-17 Score=127.69 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=71.4
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhccCCCcEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHHH
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVS 200 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi~ 200 (207)
+++|.||||.+|+ |..||..|.+.|...||+++|.+.|+ +.|.|||.++|.++|+.+. ...|||+++|++
T Consensus 24 ~vrV~IeYC~~C~-~~~ra~~laqeLl~tFp~~~V~l~pg--~~G~FeV~v~g~li~sk~~-------~g~FPe~~el~~ 93 (117)
T 2ljk_A 24 GVRIVVEYCEPCG-FEATYLELASAVKEQYPGIEIESRLG--GTGAFEIEINGQLVFSKLE-------NGGFPYEKDLIE 93 (117)
T ss_dssp SCCCEEEECTTTT-CHHHHHHHHHHHTTTCSSSCCEEEEC--SSSCEEEETTSSCCBCHHH-------HCSCCCTTTTTH
T ss_pred CCeEEEEECCCCC-CHHHHHHHHHHHHhhCCcceEEEecC--CCceEEEEECCEEEEEEcc-------CCCCCCHHHHHH
Confidence 5789999999997 99999999999999999999999986 8999999999999999998 668999999999
Q ss_pred HHHHhh
Q 028564 201 DIVAKL 206 (207)
Q Consensus 201 ~I~~aL 206 (207)
.|.+++
T Consensus 94 ~Vrd~~ 99 (117)
T 2ljk_A 94 AIRRAS 99 (117)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999876
No 2
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=99.59 E-value=2.8e-15 Score=114.15 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=70.3
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhccCCC-cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHH
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG-INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVV 199 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~-~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi 199 (207)
.++|.|+||.+|+ |..||..|.+.|...||+ +.|.+.......|+|||.++|.++|+.+. ...|||.+++.
T Consensus 2 ~~~V~I~YC~~C~-y~~ra~~laqeLl~~Fp~~l~V~~~l~p~~~G~FEV~vng~lV~SKk~-------~ggFP~~~el~ 73 (96)
T 2npb_A 2 ALAVRVVYSGACG-YKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKR-------GDGYVDTESKF 73 (96)
T ss_dssp CEEEEEECCCCSC-HHHHHHHHHHHHHHHSBTTEEEEECCCSSCCSCCEEEETTEEEEETTT-------TCCSSCSHHHH
T ss_pred CCEEEEEEcCCCC-CHHHHHHHHHHHHHhCCcceEEEEEEcCCCCcEEEEEECCEEEEEEec-------CCCCCChHHHH
Confidence 3679999999997 999999999999999999 77777776557899999999989999988 78899999999
Q ss_pred HHHHHhh
Q 028564 200 SDIVAKL 206 (207)
Q Consensus 200 ~~I~~aL 206 (207)
+.|+++|
T Consensus 74 q~I~~~i 80 (96)
T 2npb_A 74 RKLVTAI 80 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 3
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=99.56 E-value=2.1e-15 Score=116.81 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=70.4
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV 198 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V 198 (207)
.++|.|+||.+|+ |..||..|.+.|...||+ .+|.+.|+ +.|+|||.++|.++|+.+. ...|||.++|
T Consensus 7 ~~~V~I~YC~~C~-~~~Ra~~laqeLl~tF~~~l~~V~l~P~--~~G~FEV~vng~lV~SKk~-------~ggFPe~~el 76 (105)
T 2fa8_A 7 KPRIAIRYCTQCN-WLLRAGWMAQEILQTFASDIGEVSLIPS--TGGLFEITVDGTIIWERKR-------DGGFPGPKEL 76 (105)
T ss_dssp CCEEEEEEETTTT-CHHHHHHHHHHHHHHHGGGCSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred CCEEEEEECCCCC-CHHHHHHHHHHHHHHcCcccceEEEEcC--CCcEEEEEECCEEEEEecc-------CCCCCCHHHH
Confidence 4789999999997 999999999999999998 58999987 8999999999989999988 6789999999
Q ss_pred HHHHHHhh
Q 028564 199 VSDIVAKL 206 (207)
Q Consensus 199 i~~I~~aL 206 (207)
.+.|.++|
T Consensus 77 kq~Vr~~i 84 (105)
T 2fa8_A 77 KQRIRDLI 84 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999887
No 4
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=99.53 E-value=1.1e-14 Score=112.87 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=70.6
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV 198 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V 198 (207)
.++|.|+||.+|+ |..||..|.+.|...||+ .+|.+-|+ ..|.|||.++|.++|+.+. ...|||.++|
T Consensus 5 ~p~V~I~YC~~C~-~~~Ra~~laqeLl~tF~~~l~~v~l~P~--~~G~FEV~vng~lV~SKk~-------~ggFPe~~eL 74 (104)
T 2oka_A 5 KPEIVITYCTQCQ-WLLRAAWLAQELLSTFADDLGKVCLEPG--TGGVFRITCDGVQVWERKA-------DGGFPEAKAL 74 (104)
T ss_dssp CCEEEEEEETTTT-CHHHHHHHHHHHHHHSTTTCSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred CCEEEEEECCCCC-ChHHHHHHHHHHHHHcCcccceEEEEeC--CCceEEEEECCEEEEEEec-------CCCCCCHHHH
Confidence 5889999999997 999999999999999999 68999987 7999999999999999998 5789999999
Q ss_pred HHHHHHhh
Q 028564 199 VSDIVAKL 206 (207)
Q Consensus 199 i~~I~~aL 206 (207)
.+.|.++|
T Consensus 75 kq~Vrd~i 82 (104)
T 2oka_A 75 KQRVRDRI 82 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
No 5
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=99.49 E-value=2e-14 Score=111.52 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=69.9
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV 198 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V 198 (207)
.++|.|+||.+|+ |..||..|.+.|...||+ .+|.+-|+ ..|.|||.++|.++|+.+. ...|||.++|
T Consensus 3 ~~~V~I~YC~~C~-w~~Ra~~laqeLl~tF~~~l~~v~l~P~--~~G~FEV~vng~lV~SKk~-------~ggFPe~~eL 72 (105)
T 2p0g_A 3 KAQIEIYYCRQCN-WMLRSAWLSQELLHTFSEEIEYVALHPD--TGGRFEIFCNGVQIWERKQ-------EGGFPEAKVL 72 (105)
T ss_dssp CEEEEEEEETTTT-CHHHHHHHHHHHHHHTTTTEEEEEEEEE--STTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred CCEEEEEECCCCC-ChHHHHHHHHHHHHHcCcccceEEEEeC--CCceEEEEECCEEEEEEec-------CCCCCCHHHH
Confidence 4789999999997 999999999999999999 58888876 7999999999999999998 5789999999
Q ss_pred HHHHHHhh
Q 028564 199 VSDIVAKL 206 (207)
Q Consensus 199 i~~I~~aL 206 (207)
.+.|.+.|
T Consensus 73 kq~Vrd~i 80 (105)
T 2p0g_A 73 KQRVRDLI 80 (105)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99998876
No 6
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=99.42 E-value=1.5e-13 Score=107.24 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=69.3
Q ss_pred CCCcceEEEcccccchhhHHhHHHHHHHHhccCCCc--EEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCCh
Q 028564 118 ESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI--NVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDM 195 (207)
Q Consensus 118 ~p~~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~~--qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~ 195 (207)
.|..++|.|+||.+|+ |..||..|.+.|...||+. +|.+.|+ ..|.|||.++|.++|+... ..|||.
T Consensus 9 ~~~~p~V~I~YC~~C~-w~lRa~~laqeLl~tF~~~l~eVsL~Pg--~gG~FeV~vdg~lVwsRk~--------gGFPd~ 77 (107)
T 3dex_A 9 TPHTHRVQIEYCTQCR-WLPRAAWLAQELLTTFETELTELALKPG--TGGVFVVRVDDEVVWDRRE--------QGFPEP 77 (107)
T ss_dssp --CCEEEEEEEETTTT-CHHHHHHHHHHHHHHSTTTEEEEEEEEE--SSSCEEEEETTEEEEEHHH--------HCSCCH
T ss_pred CCCCCEEEEEECCCCC-ChHHHHHHHHHHHHhcccccceEEEEeC--CCceEEEEECCEEEEEecC--------CCCCCH
Confidence 3557899999999997 9999999999999999998 8999987 7999999999988888872 479999
Q ss_pred HHHHHHHHHhh
Q 028564 196 DEVVSDIVAKL 206 (207)
Q Consensus 196 D~Vi~~I~~aL 206 (207)
.+|.+.|.+.|
T Consensus 78 keLkq~VRd~i 88 (107)
T 3dex_A 78 TAVKRLVRDRV 88 (107)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 7
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=99.40 E-value=2.5e-13 Score=106.17 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=69.4
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV 198 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V 198 (207)
.++|.|+||.+|+ |..||..|.+.|...||+ .+|.+-|+ ..|.|||.++|..+|+.+. ...|||..+|
T Consensus 8 ~~~V~I~YC~~C~-w~lRa~~laqeLl~tF~~~l~eV~L~P~--~~G~FeV~vng~lVwsRk~-------~ggFPe~keL 77 (108)
T 2ojl_A 8 PPRIAIQYCTQCQ-WLLRAAWMAQELLSTFGADLGEVALVPG--TGGVFRIHYNGAPLWDREV-------DGGFPEAKVL 77 (108)
T ss_dssp CCEEEEEEETTTT-CHHHHHHHHHHHHHHHGGGSSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HCSCCCHHHH
T ss_pred CCEEEEEECCCCC-ChHHHHHHHHHHHHhcCcccceEEEEeC--CCceEEEEECCEEEEEEcc-------CCCCCCHHHH
Confidence 5889999999997 999999999999999974 57999886 7999999999999999998 6889999999
Q ss_pred HHHHHHhh
Q 028564 199 VSDIVAKL 206 (207)
Q Consensus 199 i~~I~~aL 206 (207)
.+.|.+.|
T Consensus 78 kq~Vrd~i 85 (108)
T 2ojl_A 78 KQRVRDHL 85 (108)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999876
No 8
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=74.82 E-value=6.4 Score=25.47 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=26.3
Q ss_pred CCcceEEEc--ccccchhhHHhHHHHHHHHhccCCCcE-EEecCC
Q 028564 119 SKERTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNPE 160 (207)
Q Consensus 119 p~~~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp~ 160 (207)
-...++.|+ +|..|. ..+..+|.. ||+. +.+|..
T Consensus 4 m~~~~~~v~gm~C~~C~------~~ie~~l~~--~gv~~~~v~~~ 40 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCV------ARVKKALEE--AGAKVEKVDLN 40 (73)
T ss_dssp CEEEEEEEESSBCGGGH------HHHHHHHHH--TTCEEEEECSS
T ss_pred cEEEEEEECCCCCHHHH------HHHHHHhcc--CCcEEEEEEcc
Confidence 345678887 799995 888899987 8884 888854
No 9
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=66.39 E-value=28 Score=26.55 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=35.1
Q ss_pred eEEEcccccchhhHHhHHHHHHHHhccCCCcEEEecCCCCCcceeEEEecCCeeEEEec
Q 028564 123 TVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLL 181 (207)
Q Consensus 123 ~VvIEhCksC~~FKrRA~eL~~aL~ea~P~~qV~INp~KPRRGsFEV~i~gg~v~~sL~ 181 (207)
.|+| ||..-. +. ....+...+...||++.|.|.....-.|.|-|...+|...+-+|
T Consensus 121 ~v~i-~v~~~D-~~-~v~~~~~~~~~~~~~~~l~i~~~~~~~GG~~i~~~~G~i~id~t 176 (198)
T 2dm9_A 121 KVRV-MSNEKT-LG-LIASRIEEIKSELGDVSIELGETVDTMGGVIVETEDGRIRIDNT 176 (198)
T ss_dssp EEEE-ECCHHH-HH-HHHHTHHHHHHHCTTCEEEECCCCCCSSEEEEEETTSSCEEEEE
T ss_pred CEEE-EECHhH-HH-HHHHHHHHHHHHhcCceEEECCCCCccCceEEEeCCCCEEEECc
Confidence 4556 665542 22 22333444566678888888543456899999988776666555
No 10
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=53.42 E-value=13 Score=29.62 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=39.3
Q ss_pred ceEEEcccccchhhHHhHHHHHHHHhc---cCCCcEEEecCCCCCcceeEEEecCCe--eEEEecCC
Q 028564 122 RTVVIEHCKQCNSFKTRANHVKDGLEK---GVPGINVLLNPEKPRRGCFEIREDGGE--KFISLLDM 183 (207)
Q Consensus 122 ~~VvIEhCksC~~FKrRA~eL~~aL~e---a~P~~qV~INp~KPRRGsFEV~i~gg~--v~~sL~gM 183 (207)
.+.+||-|..|+ ..+.-+|+.+|.+ .||++.|.--+| +.=...+--..|. .-+++.+|
T Consensus 15 arA~lEvC~~Ck--L~~~PeIk~FIk~d~~~y~~v~Vkyi~G--a~P~LvL~D~~G~e~E~I~Iekw 77 (129)
T 2a2p_A 15 ARGRVETCGGCQ--LNRLKEVKAFVTEDIQLYHNLVMKHLPG--ADPELVLLSRNYQELERIPLSQM 77 (129)
T ss_dssp CEEEEEEETTCC--CSTTHHHHHHTTTHHHHBTTEEEEEESS--CCCEEEEECSSSCCCEEEECSSS
T ss_pred ceEEEEECCCcc--cccchhHHHHHhCchhhcCceeEEEeCC--CCCEEEEecCCCCEEEEeecccC
Confidence 568899999997 6677889999984 389988887765 4444555433333 33555544
No 11
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=44.23 E-value=18 Score=26.67 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=21.7
Q ss_pred cceEEEcc----cccchhhHHhHHHHHHHHhccCCCcEEEecC
Q 028564 121 ERTVVIEH----CKQCNSFKTRANHVKDGLEKGVPGINVLLNP 159 (207)
Q Consensus 121 ~~~VvIEh----CksC~~FKrRA~eL~~aL~ea~P~~qV~INp 159 (207)
.+.++|++ |..|..|.+. |.+.+. .++++.|.+.+
T Consensus 22 a~v~i~~f~d~~Cp~C~~~~~~---l~~l~~-~~~~v~~~~~~ 60 (175)
T 3gyk_A 22 GDVTVVEFFDYNCPYCRRAMAE---VQGLVD-ADPNVRLVYRE 60 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHH---HHHHHH-HCTTEEEEEEE
T ss_pred CCEEEEEEECCCCccHHHHHHH---HHHHHH-hCCCEEEEEEe
Confidence 45556666 9999877654 333333 36787766654
No 12
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=41.43 E-value=60 Score=19.92 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=22.6
Q ss_pred ceEEEc--ccccchhhHHhHHHHHHHHhccCCCc-EEEecCC
Q 028564 122 RTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPE 160 (207)
Q Consensus 122 ~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~-qV~INp~ 160 (207)
.++.|+ +|..|. ..+..+|.. .||+ .+.+|..
T Consensus 4 ~~~~v~gm~C~~C~------~~i~~~l~~-~~gv~~~~v~~~ 38 (69)
T 4a4j_A 4 INLQLEGMDCTSCA------SSIERAIAK-VPGVQSCQVNFA 38 (69)
T ss_dssp EEEEEESCCSHHHH------HHHHHHHHT-STTEEEEEEETT
T ss_pred EEEEECCeecHHHH------HHHHHHHhc-CCCeEEEEEEec
Confidence 456777 799995 777777765 4777 4777754
No 13
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=38.86 E-value=27 Score=25.55 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=18.2
Q ss_pred EEEcc----cccchhhHHhHHHHHHHHhccCCCcEEEe
Q 028564 124 VVIEH----CKQCNSFKTRANHVKDGLEKGVPGINVLL 157 (207)
Q Consensus 124 VvIEh----CksC~~FKrRA~eL~~aL~ea~P~~qV~I 157 (207)
.+||+ |..|..|.. .|.+.++...-++.+..
T Consensus 24 ~vvEf~dy~Cp~C~~~~~---~~~~l~~~~~~~~~~~~ 58 (184)
T 4dvc_A 24 VVSEFFSFYCPHCNTFEP---IIAQLKQQLPEGAKFQK 58 (184)
T ss_dssp EEEEEECTTCHHHHHHHH---HHHHHHHTSCTTCEEEE
T ss_pred EEEEEECCCCHhHHHHhH---HHHHHHhhcCCceEEEE
Confidence 56787 999987753 45554444333455443
No 14
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.62 E-value=23 Score=24.83 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=25.4
Q ss_pred cccccchhhHHhHHHHHHHHhccCCCcE-EEecC
Q 028564 127 EHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNP 159 (207)
Q Consensus 127 EhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp 159 (207)
..|..|..+.....+|.+.+....+++. +.||-
T Consensus 44 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~ 77 (140)
T 2dj1_A 44 PWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77 (140)
T ss_dssp TTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECT
T ss_pred CCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeC
Confidence 4599999999999999988887655564 45554
No 15
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=37.74 E-value=27 Score=25.82 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=22.1
Q ss_pred cceEEEcc----cccchhhHHhHHHHHHHHhccCCCcEEEecC
Q 028564 121 ERTVVIEH----CKQCNSFKTRANHVKDGLEKGVPGINVLLNP 159 (207)
Q Consensus 121 ~~~VvIEh----CksC~~FKrRA~eL~~aL~ea~P~~qV~INp 159 (207)
.+..++++ |..|..|.+....+.+.+.+ -.++.|...+
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~~~v~~~~~~ 68 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVK-SGKVERIIKL 68 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhh-CCcEEEEEEe
Confidence 34445554 99998887765554443321 2457766654
No 16
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=34.73 E-value=27 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=17.4
Q ss_pred cccchhhHHhHHHHHHHHhccCC---CcEEEecC
Q 028564 129 CKQCNSFKTRANHVKDGLEKGVP---GINVLLNP 159 (207)
Q Consensus 129 CksC~~FKrRA~eL~~aL~ea~P---~~qV~INp 159 (207)
|..|..|... |...|...++ ++.|...+
T Consensus 23 Cp~C~~~~~~---l~~~l~~~~~~~~~v~~~~~~ 53 (186)
T 3bci_A 23 CPYCKELDEK---VMPKLRKNYIDNHKVEYQFVN 53 (186)
T ss_dssp CHHHHHHHHH---HHHHHHHHTTTTTSSEEEEEE
T ss_pred ChhHHHHHHH---HHHHHHHHhccCCeEEEEEEe
Confidence 9999766544 3445554443 57777665
No 17
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=29.27 E-value=26 Score=22.95 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=38.5
Q ss_pred EEEcccccchhhHHhHHHHHHHHhccCCCcE-EEecCCCCC----------cceeEEEecCCeeEEEecCCCCCCCCCCC
Q 028564 124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNPEKPR----------RGCFEIREDGGEKFISLLDMKRPFKPMKD 192 (207)
Q Consensus 124 VvIEhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp~KPR----------RGsFEV~i~gg~v~~sL~gMkRPf~kLKf 192 (207)
++-..|..|..+.....+|.+.+.. .+. +.+|.+..+ -=+|-+- .+|.....+.|.
T Consensus 28 f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~--------- 94 (109)
T 3tco_A 28 CWAEWCAPCHLYEPIYKKVAEKYKG---KAVFGRLNVDENQKIADKYSVLNIPTTLIF-VNGQLVDSLVGA--------- 94 (109)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEEESC---------
T ss_pred EECCCCHHHHhhhHHHHHHHHHhCC---CceEEEEccccCHHHHHhcCcccCCEEEEE-cCCcEEEeeecc---------
Confidence 3445699999888777776665543 343 344432211 1133333 344444445543
Q ss_pred CChHHHHHHHHHhhC
Q 028564 193 LDMDEVVSDIVAKLK 207 (207)
Q Consensus 193 PD~D~Vi~~I~~aLk 207 (207)
.+.+++.+-|.+.|+
T Consensus 95 ~~~~~l~~~l~~~l~ 109 (109)
T 3tco_A 95 VDEDTLESTVNKYLK 109 (109)
T ss_dssp CCHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhC
Confidence 467777777776653
No 18
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=28.89 E-value=36 Score=27.22 Aligned_cols=38 Identities=16% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCcceEEEcc----cccchhhHHhHHHHHHHHhccC---CCcEEEecC
Q 028564 119 SKERTVVIEH----CKQCNSFKTRANHVKDGLEKGV---PGINVLLNP 159 (207)
Q Consensus 119 p~~~~VvIEh----CksC~~FKrRA~eL~~aL~ea~---P~~qV~INp 159 (207)
|+.++.+||| |.+|..|-. .+...|.+.+ +.+.+.+.+
T Consensus 13 ~~a~vtivef~D~~Cp~C~~~~~---~~~~~l~~~~i~~g~v~~v~r~ 57 (205)
T 3gmf_A 13 PAAKLRLVEFVSYTCPHCSHFEI---ESEGQLKIGMVQPGKGAIEVRN 57 (205)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHH---HHHHHHHHHTTTTTSEEEEEEE
T ss_pred CCCCeEEEEEECCCCHHHHHHHH---HHHHHHHHHhccCCeEEEEEEe
Confidence 3455566666 999986653 4445555333 456666554
No 19
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=28.18 E-value=27 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=20.5
Q ss_pred ceEEEcc----cccchhhHHhHHHHHHHHhccCC-CcEEEecC
Q 028564 122 RTVVIEH----CKQCNSFKTRANHVKDGLEKGVP-GINVLLNP 159 (207)
Q Consensus 122 ~~VvIEh----CksC~~FKrRA~eL~~aL~ea~P-~~qV~INp 159 (207)
++.+||| |..|..|-.. |...|+..+| ++.|.+.+
T Consensus 15 ~vtiv~f~D~~Cp~C~~~~~~---~~~~l~~~~~g~v~~v~r~ 54 (182)
T 3gn3_A 15 PRLFEVFLEPTCPFSVKAFFK---LDDLLAQAGEDNVTVRIRL 54 (182)
T ss_dssp SEEEEEEECTTCHHHHHHHTT---HHHHHHHHCTTTEEEEEEE
T ss_pred CEEEEEEECCCCHhHHHHHHH---HHHHHHHhCCCCEEEEEEE
Confidence 4455556 9999866544 3444554446 46666553
No 20
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=28.05 E-value=32 Score=22.85 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=23.9
Q ss_pred EEEcccccchhhHHhHHHHHHHHhccCCCcE-EEecC
Q 028564 124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNP 159 (207)
Q Consensus 124 VvIEhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp 159 (207)
++-..|..|..+.....+|.+.+....+.+. +.+|-
T Consensus 31 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~ 67 (120)
T 1mek_A 31 FYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67 (120)
T ss_dssp EECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET
T ss_pred EECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcC
Confidence 3445699999999888888777765434442 44443
No 21
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=27.10 E-value=42 Score=25.22 Aligned_cols=34 Identities=18% Similarity=0.519 Sum_probs=20.7
Q ss_pred CCcceEEEcc----cccchhhHHhHHHHHHHHhccCCC-cEEE
Q 028564 119 SKERTVVIEH----CKQCNSFKTRANHVKDGLEKGVPG-INVL 156 (207)
Q Consensus 119 p~~~~VvIEh----CksC~~FKrRA~eL~~aL~ea~P~-~qV~ 156 (207)
++++..+||+ |..|..|.+. | ..|...+|+ +.+.
T Consensus 23 ~~~~~~i~~f~d~~Cp~C~~~~~~---l-~~l~~~~~~~v~~~ 61 (192)
T 3h93_A 23 QPGKIEVVELFWYGCPHCYAFEPT---I-VPWSEKLPADVHFV 61 (192)
T ss_dssp STTSEEEEEEECTTCHHHHHHHHH---H-HHHHHTCCTTEEEE
T ss_pred CCCCCEEEEEECCCChhHHHhhHH---H-HHHHHhCCCCeEEE
Confidence 3456677776 9999877653 3 334555665 4444
No 22
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=27.10 E-value=1.4e+02 Score=19.91 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=40.7
Q ss_pred EEcccccchhhHHhHHHHHHHHhcc--CCCcE-EEecCCCCCcceeEEEecCCeeEEEec-CCC-CCCCCCCCCChHHHH
Q 028564 125 VIEHCKQCNSFKTRANHVKDGLEKG--VPGIN-VLLNPEKPRRGCFEIREDGGEKFISLL-DMK-RPFKPMKDLDMDEVV 199 (207)
Q Consensus 125 vIEhCksC~~FKrRA~eL~~aL~ea--~P~~q-V~INp~KPRRGsFEV~i~gg~v~~sL~-gMk-RPf~kLKfPD~D~Vi 199 (207)
+-..|..|..+.+...+|.+.+... .+++. +.||-+...-.. .|.+-=++..+- |-+ .+.+-....+.+++.
T Consensus 33 ~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~---~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~ 109 (121)
T 2djj_A 33 YAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD---EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLI 109 (121)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS---CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHH
T ss_pred ECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc---ccCcCCeEEEEeCcCCCCceEecCCCCHHHHH
Confidence 3355999999999888887777641 12343 445542211111 222211222222 211 133334456788888
Q ss_pred HHHHHhh
Q 028564 200 SDIVAKL 206 (207)
Q Consensus 200 ~~I~~aL 206 (207)
+-|.+.+
T Consensus 110 ~~i~~~~ 116 (121)
T 2djj_A 110 KFIAENG 116 (121)
T ss_dssp HHHHHTS
T ss_pred HHHHhcc
Confidence 7776654
No 23
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=26.10 E-value=1.9e+02 Score=22.00 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=43.6
Q ss_pred cccccchhhHHhHHHH---HHHHhccCCCcEEEecCCCC-------Ccc--eeEEEecCCeeEEEecCCC-CCCCCCCCC
Q 028564 127 EHCKQCNSFKTRANHV---KDGLEKGVPGINVLLNPEKP-------RRG--CFEIREDGGEKFISLLDMK-RPFKPMKDL 193 (207)
Q Consensus 127 EhCksC~~FKrRA~eL---~~aL~ea~P~~qV~INp~KP-------RRG--sFEV~i~gg~v~~sL~gMk-RPf~kLKfP 193 (207)
.-|..|..+.+...++ ...+...| +.|.++.+.+ -+| +|-+--.+|..+..+.|.. ++.-..-.-
T Consensus 54 ~WC~~Ck~m~p~~~~~~~~~~~~~~~f--v~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~ 131 (151)
T 3ph9_A 54 EDCQYSQALKKVFAQNEEIQEMAQNKF--IMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPR 131 (151)
T ss_dssp TTCHHHHHHHHHHHHCHHHHHHHHHTC--EEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGG
T ss_pred CCCHhHHHHHHHHhcCHHHHHHhhcCe--EEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchh
Confidence 4499999887766653 33333233 3455542111 112 2322222555555666663 333334456
Q ss_pred ChHHHHHHHHHhhC
Q 028564 194 DMDEVVSDIVAKLK 207 (207)
Q Consensus 194 D~D~Vi~~I~~aLk 207 (207)
|++.+++.|.++|+
T Consensus 132 ~~~~ll~~~~~al~ 145 (151)
T 3ph9_A 132 DLPLLIENMKKALR 145 (151)
T ss_dssp GHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHH
Confidence 78999999998875
No 24
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=25.58 E-value=32 Score=27.42 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=26.8
Q ss_pred cceEEEcccccchhhHHhHHHHHHHHhc----cCCCcEEEecCC
Q 028564 121 ERTVVIEHCKQCNSFKTRANHVKDGLEK----GVPGINVLLNPE 160 (207)
Q Consensus 121 ~~~VvIEhCksC~~FKrRA~eL~~aL~e----a~P~~qV~INp~ 160 (207)
-...+||.| .|+ ..++=+|+.+|.. .||+++|.--+|
T Consensus 20 Ya~A~LEvC-~CK--L~~yPeVk~FI~~d~~~~fpnL~vkyv~G 60 (126)
T 2a4h_A 20 YAKAILEVC-TCK--FRAYPQIQAFIQSGRPAKFPNLQIKYVRG 60 (126)
T ss_dssp CSCBEEECC-SCT--TTTCTTHHHHHHHTTGGGCTTBCCCCCSS
T ss_pred cCceEEEEc-chh--hhcCHHHHHHHccchhhhCCceEEEEecC
Confidence 456788899 996 5677788888874 478877765553
No 25
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=25.50 E-value=1.6e+02 Score=20.01 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=24.0
Q ss_pred ceEEEcc----cccchhhHHhHHHHHHHHhccCCCcE-EEecC
Q 028564 122 RTVVIEH----CKQCNSFKTRANHVKDGLEKGVPGIN-VLLNP 159 (207)
Q Consensus 122 ~~VvIEh----CksC~~FKrRA~eL~~aL~ea~P~~q-V~INp 159 (207)
..++|.+ |..|..+...-.+|.+.+... ++. |.|+.
T Consensus 32 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~ 72 (148)
T 3hcz_A 32 KYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANI 72 (148)
T ss_dssp SEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEEC
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEe
Confidence 4455544 999998888888887777654 353 34443
No 26
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=25.31 E-value=90 Score=23.25 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=40.3
Q ss_pred EEcccccchhhHHhHHHHHHHHhccCCCcEEEecCCCC-CcceeEEEe----------cCCeeEEEecCCCC-CCCCCCC
Q 028564 125 VIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKP-RRGCFEIRE----------DGGEKFISLLDMKR-PFKPMKD 192 (207)
Q Consensus 125 vIEhCksC~~FKrRA~eL~~aL~ea~P~~qV~INp~KP-RRGsFEV~i----------~gg~v~~sL~gMkR-Pf~kLKf 192 (207)
+-..|..|..+.+...++.+.....+.=+.|.+..... -...|.|.+ .+|..+..+.|... +--..-+
T Consensus 54 ~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~ 133 (164)
T 1sen_A 54 HKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFY 133 (164)
T ss_dssp ECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCC
T ss_pred ECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhccc
Confidence 33459999988876666655443322222343332211 223343321 13333333444432 1111224
Q ss_pred CChHHHHHHHHHhh
Q 028564 193 LDMDEVVSDIVAKL 206 (207)
Q Consensus 193 PD~D~Vi~~I~~aL 206 (207)
.+.+.+++.|...|
T Consensus 134 ~~~~~l~~~l~~~l 147 (164)
T 1sen_A 134 VSAEQVVQGMKEAQ 147 (164)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 78889888887665
No 27
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=24.77 E-value=21 Score=23.63 Aligned_cols=36 Identities=11% Similarity=0.306 Sum_probs=21.7
Q ss_pred EEEcccccchhhHHhHHHHHHHHhccCCCcE-EEecC
Q 028564 124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNP 159 (207)
Q Consensus 124 VvIEhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp 159 (207)
++-..|..|..+.....+|.+.+....+++. +.+|-
T Consensus 28 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~ 64 (111)
T 3uvt_A 28 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 64 (111)
T ss_dssp EECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEET
T ss_pred EECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEec
Confidence 3445699998777766666655544445664 34554
No 28
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=24.44 E-value=70 Score=24.26 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=27.1
Q ss_pred EEcccccchhhHHhHHHHHHHHhccCCCcE-EEecC
Q 028564 125 VIEHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNP 159 (207)
Q Consensus 125 vIEhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp 159 (207)
+-..|..|..+.....+|...+....|++. +.||-
T Consensus 155 ~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~ 190 (241)
T 3idv_A 155 YAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 190 (241)
T ss_dssp ECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEET
T ss_pred ECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEEC
Confidence 335599999999999999999988777774 44543
No 29
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=24.38 E-value=43 Score=21.05 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=15.7
Q ss_pred cccccchhhHHhHHHHHHHHh
Q 028564 127 EHCKQCNSFKTRANHVKDGLE 147 (207)
Q Consensus 127 EhCksC~~FKrRA~eL~~aL~ 147 (207)
..|..|..+.+...+|.+.+.
T Consensus 11 ~~C~~C~~~~~~l~~~~~~~~ 31 (85)
T 1nho_A 11 PTCPYCPMAIEVVDEAKKEFG 31 (85)
T ss_dssp SSSCCSTTHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHHhc
Confidence 469999988887776666554
No 30
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=24.01 E-value=40 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=19.4
Q ss_pred ccccchhhHHhHHHHHHHHhccCCCcEEEecCC
Q 028564 128 HCKQCNSFKTRANHVKDGLEKGVPGINVLLNPE 160 (207)
Q Consensus 128 hCksC~~FKrRA~eL~~aL~ea~P~~qV~INp~ 160 (207)
||..|. ..+.++|.. .||+.+.+|..
T Consensus 11 ~C~~C~------~~i~~~l~~-~~gV~v~v~~~ 36 (68)
T 3iwl_A 11 TCGGCA------EAVSRVLNK-LGGVKYDIDLP 36 (68)
T ss_dssp CSHHHH------HHHHHHHHH-HCSEEEEEETT
T ss_pred CcHHHH------HHHHHHHHc-CCCeEEEEEcC
Confidence 688885 778888875 47777777764
No 31
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.72 E-value=68 Score=22.07 Aligned_cols=32 Identities=6% Similarity=0.256 Sum_probs=21.1
Q ss_pred cccccchhhHHhHHHHHHHHhccCCCcE-EEecC
Q 028564 127 EHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNP 159 (207)
Q Consensus 127 EhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp 159 (207)
..|..|..+.+...+|.+.+... +++. +.||-
T Consensus 35 ~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~vd~ 67 (133)
T 2dj3_A 35 PWCGHCKQLEPIYTSLGKKYKGQ-KDLVIAKMDA 67 (133)
T ss_dssp TTCSHHHHHHHHHHHHHHHHTTS-SSEEEEEECT
T ss_pred CCChhHHHHHHHHHHHHHHhcCC-CCEEEEEecC
Confidence 34999998888887777776532 3443 44554
No 32
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=22.31 E-value=1e+02 Score=22.60 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=22.5
Q ss_pred cceEEEcc---cccchhhHHhH-HHHHHHHhccCCCcEEE
Q 028564 121 ERTVVIEH---CKQCNSFKTRA-NHVKDGLEKGVPGINVL 156 (207)
Q Consensus 121 ~~~VvIEh---CksC~~FKrRA-~eL~~aL~ea~P~~qV~ 156 (207)
..+|+|.+ |..|..--.-- .-+.+.|++.+|++...
T Consensus 37 ~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V 76 (88)
T 1xhj_A 37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEV 76 (88)
T ss_dssp SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEE
T ss_pred CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEE
Confidence 35788877 77775322222 24667777889999543
No 33
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=22.18 E-value=49 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcceEEEcc----cccchhhHHhHHHHHHHHhccCC---CcEEEecC
Q 028564 120 KERTVVIEH----CKQCNSFKTRANHVKDGLEKGVP---GINVLLNP 159 (207)
Q Consensus 120 ~~~~VvIEh----CksC~~FKrRA~eL~~aL~ea~P---~~qV~INp 159 (207)
+.++.+||| |..|..|-.. |...|...++ ++.+...+
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~---~~~~l~~~~~~~g~v~~~~~~ 71 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSD---IFPKIQKDFIDKGDVKFSFVN 71 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHH---THHHHHHHTTTTTSEEEEEEE
T ss_pred CCCEEEEEEECCCChhHHHHHHH---hhHHHHHHhccCCeEEEEEEe
Confidence 345566676 9999866543 3344544443 56666554
No 34
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.47 E-value=91 Score=19.41 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=21.9
Q ss_pred ceEEEc--ccccchhhHHhHHHHHHHHhccCCCc-EEEecCC
Q 028564 122 RTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPE 160 (207)
Q Consensus 122 ~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~-qV~INp~ 160 (207)
.++.|+ +|..|. ..+.++|.. .||+ .+.+|..
T Consensus 4 ~~~~v~gm~C~~C~------~~ie~~l~~-~~gv~~~~v~~~ 38 (74)
T 3dxs_X 4 IQVGVTGMTCAACS------NSVEAALMN-VNGVFKASVALL 38 (74)
T ss_dssp EEEEEECCCSHHHH------HHHHHHHHT-STTEEEEEEEGG
T ss_pred EEEEECCcCCHHHH------HHHHHHHhc-CCCEEEEEEEec
Confidence 345665 699995 777777764 4787 4777753
No 35
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=21.31 E-value=59 Score=20.37 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=14.7
Q ss_pred EEcccccchhhHHhHHHHHHHH
Q 028564 125 VIEHCKQCNSFKTRANHVKDGL 146 (207)
Q Consensus 125 vIEhCksC~~FKrRA~eL~~aL 146 (207)
+-..|..|..+.....+|.+.+
T Consensus 10 ~~~~C~~C~~~~~~l~~~~~~~ 31 (85)
T 1fo5_A 10 TSPMCPHCPAAKRVVEEVANEM 31 (85)
T ss_dssp ECCCSSCCCTHHHHHHHHHHHC
T ss_pred eCCCCCchHHHHHHHHHHHHHc
Confidence 3456999998777665554443
No 36
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=21.07 E-value=1.6e+02 Score=20.65 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=15.8
Q ss_pred EcccccchhhHHhHHHHHHHHh
Q 028564 126 IEHCKQCNSFKTRANHVKDGLE 147 (207)
Q Consensus 126 IEhCksC~~FKrRA~eL~~aL~ 147 (207)
-..|..|..+.....+|.+.+.
T Consensus 49 a~wC~~C~~~~p~l~~l~~~~~ 70 (128)
T 2o8v_B 49 AEWCGPAKMIAPILDEIADEYQ 70 (128)
T ss_dssp CSSCHHHHHTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHhHHHHHHHHHhc
Confidence 3459999988887776666554
No 37
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=20.98 E-value=1.3e+02 Score=18.47 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCCCcceEEEc--ccccchhhHHhHHHHHHHHhccCCCc-EEEecC
Q 028564 117 DESKERTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNP 159 (207)
Q Consensus 117 d~p~~~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~-qV~INp 159 (207)
.+.....+.|+ +|..|. ..+...|... +|+ .+.+|.
T Consensus 5 ~~~~~~~~~v~gm~C~~C~------~~i~~~l~~~-~gv~~~~v~~ 43 (79)
T 1kvi_A 5 MGVNSVTISVEGMTCNSCV------WTIEQQIGKV-NGVHHIKVSL 43 (79)
T ss_dssp TTCEEEEEEECCCCSTTTH------HHHHHHHHHS-SSCCCEEEEG
T ss_pred CCcEEEEEEECCccCHHHH------HHHHHHHhcC-CCeEEEEEEc
Confidence 33445667776 599995 6677777644 666 466664
No 38
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=20.78 E-value=69 Score=19.86 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.7
Q ss_pred ceEEEcccccchhhHHhHHHHHHHHh
Q 028564 122 RTVVIEHCKQCNSFKTRANHVKDGLE 147 (207)
Q Consensus 122 ~~VvIEhCksC~~FKrRA~eL~~aL~ 147 (207)
+.++-..|..|..+.....+|.+.+.
T Consensus 4 v~f~a~wC~~C~~~~~~l~~~~~~~~ 29 (77)
T 1ilo_A 4 IQIYGTGCANCQMLEKNAREAVKELG 29 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTT
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHcC
Confidence 45667789999977777766665543
No 39
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=20.58 E-value=61 Score=26.24 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=21.2
Q ss_pred CcceEEEcc----cccchhhHHhH-HHHHHHHhccCCCcEEEecC
Q 028564 120 KERTVVIEH----CKQCNSFKTRA-NHVKDGLEKGVPGINVLLNP 159 (207)
Q Consensus 120 ~~~~VvIEh----CksC~~FKrRA-~eL~~aL~ea~P~~qV~INp 159 (207)
+.++.+||| |..|..|.... ..|.+.+-+ -+++.|...+
T Consensus 38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~-~g~V~~v~~~ 81 (226)
T 3f4s_A 38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYID-TGKMLYIFRH 81 (226)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTT-TTSEEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHccc-CCeEEEEEEe
Confidence 345566666 99998775532 233332211 1456666654
No 40
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=20.51 E-value=2.5e+02 Score=20.32 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=16.6
Q ss_pred ccccchhhHHhH---HHHHHHHhccCCCcEEEecC
Q 028564 128 HCKQCNSFKTRA---NHVKDGLEKGVPGINVLLNP 159 (207)
Q Consensus 128 hCksC~~FKrRA---~eL~~aL~ea~P~~qV~INp 159 (207)
.|..|..+.... .+|.+.+...+ +-|.||-
T Consensus 58 WC~~C~~~~~~~~~~~~~~~~~~~~~--~~v~v~~ 90 (172)
T 3f9u_A 58 GCVNCRKMELAVWTDPKVSSIINNDY--VLITLYV 90 (172)
T ss_dssp TCHHHHHHHHHTTTSHHHHHHHHHHC--EEEEEET
T ss_pred CCHHHHHHHHHhcCCHHHHHHhcCCE--EEEEEec
Confidence 399997654433 55666665532 1345554
No 41
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=20.04 E-value=92 Score=20.67 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=16.6
Q ss_pred EEcccccchhhHHhHHHHHHHHhccCCCcE
Q 028564 125 VIEHCKQCNSFKTRANHVKDGLEKGVPGIN 154 (207)
Q Consensus 125 vIEhCksC~~FKrRA~eL~~aL~ea~P~~q 154 (207)
+-..|..|..+.+...+|.+ .+|++.
T Consensus 26 ~a~wC~~C~~~~p~~~~~~~----~~~~~~ 51 (105)
T 4euy_A 26 KTENCGVCDVMLRKVNYVLE----NYNYVE 51 (105)
T ss_dssp EESSCHHHHHHHHHHHHHHH----TCTTEE
T ss_pred eCCCCcchHHHHHHHHHHHH----HcCCce
Confidence 34569999877666555544 456764
No 42
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.01 E-value=1.1e+02 Score=20.95 Aligned_cols=76 Identities=14% Similarity=0.306 Sum_probs=37.4
Q ss_pred EEcccccchhhHHhHHHHHHHHhccCCCcE-EEecCCCCCc--ceeEEEecCCeeEEEec--CCCCCCCCCCCCChHHHH
Q 028564 125 VIEHCKQCNSFKTRANHVKDGLEKGVPGIN-VLLNPEKPRR--GCFEIREDGGEKFISLL--DMKRPFKPMKDLDMDEVV 199 (207)
Q Consensus 125 vIEhCksC~~FKrRA~eL~~aL~ea~P~~q-V~INp~KPRR--GsFEV~i~gg~v~~sL~--gMkRPf~kLKfPD~D~Vi 199 (207)
+=..|..|..+.+...+|.+.+... +. +.||-+..+. -.|-|+ +...+.+. |-..+.+-....+.++++
T Consensus 43 ~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~~~~~~~~~~~G~~~~~~l~ 116 (130)
T 2dml_A 43 YAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKHQSLGGQYGVQ---GFPTIKIFGANKNKPEDYQGGRTGEAIV 116 (130)
T ss_dssp ECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTCHHHHHHHTCC---SSSEEEEESSCTTSCEECCSCCSHHHHH
T ss_pred ECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCCHHHHHHcCCC---ccCEEEEEeCCCCeEEEeecCCCHHHHH
Confidence 3345999998888877776655431 43 3455432221 112221 12122221 111122223356778888
Q ss_pred HHHHHhh
Q 028564 200 SDIVAKL 206 (207)
Q Consensus 200 ~~I~~aL 206 (207)
+.|.+.|
T Consensus 117 ~~l~~~l 123 (130)
T 2dml_A 117 DAALSAL 123 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777665
Done!