BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028565
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
Query: 51 CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 110
CVFC I+ G++PA++ +YE + L ILD P + GH+L++PK+H L TPP V
Sbjct: 7 CVFCAIVSGDAPAIR-----IYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETV 61
Query: 111 AAMCAKVPLISNAIMKAT-DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSES- 168
A M A I+ A ++ AD N+ +N+G AA Q +FH H+H++PR+ D L ++
Sbjct: 62 AGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGM 121
Query: 169 -LRRRPLKIDQETS 181
+RR P D+E S
Sbjct: 122 VMRRDP---DREES 132
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 105
G NDC+FCKI+ G+ P+ K +YE + L LD + + GH+L++PK H
Sbjct: 33 GSMNDCLFCKIVAGDIPSSK-----VYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEM 87
Query: 106 PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 159
+ A + A++P I+ A+ KAT AD N++ NN AGQ +FH H+H++PR A
Sbjct: 88 TQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFA 141
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
++C+FCKII G+ K +YE + L LD + ++ GH+L++PK H + A P
Sbjct: 9 DNCIFCKIIDGQILCSK-----VYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPE 63
Query: 109 VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD----CLW 164
+ + + + VP I+NAI + FNLL NNG AGQ +FH H+H+IPR + +W
Sbjct: 64 IASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVW 123
Query: 165 TSESLRRRPLKIDQETSQLADQVR 188
S + S +A+ V+
Sbjct: 124 KSHQNEYTXENLQNIASTIANSVK 147
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 51 CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 110
C FC II E +YE + ILD P+SLGH+L++PK HF +
Sbjct: 1 CTFCSIINRELEG-----YFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTL 55
Query: 111 AAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLR 170
A + V L+S I A AD LL N G +AGQVIFH H+HIIP D +S +
Sbjct: 56 AELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFKSFK 115
Query: 171 RRPLKIDQETSQLADQVREKLSNI 194
R + + L +RE + N+
Sbjct: 116 PRKEQEKEYYELLQKIIRESIENL 139
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
+C+FCKII G+ P+ K +YE + L LD + ++ GH+L++PK+H + +
Sbjct: 6 NCIFCKIIAGDIPSAK-----VYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDEL 60
Query: 110 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPR----KAHDCLWT 165
VP I+ AI + N L NNG AGQ +FH H+HIIPR +W
Sbjct: 61 AKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWK 120
Query: 166 SESLRRRPLKIDQETSQLADQV 187
+ + +P + +S +A ++
Sbjct: 121 THADDYKPEDLQNISSSIAKRL 142
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
+C+FCKII+G+ P K E L +D NPLS GH L++PK H SCL
Sbjct: 12 NCIFCKIIKGDIPCAKVA-----ETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMED 66
Query: 110 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESL 169
A + + S A+ + +N+L NNG+ A Q + H H HIIP+ T E
Sbjct: 67 AADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPK-------TDE-- 117
Query: 170 RRRPLKIDQETSQLA-DQVREKLSNICECSSK 200
+ LKI +T ++A D++ E E +K
Sbjct: 118 -KTGLKIGWDTVKVASDELAEDAKRYSEAIAK 148
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 35 AQQRLSHSQESGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIV 94
AQ + S + ++N+ +F K+IR E P+V+ +YE D + +D P + GH+L++
Sbjct: 14 AQTQGPGSMKQAYDNNNIFAKLIRNEIPSVR-----VYEDDDVIAFMDIMPQAPGHTLVI 68
Query: 95 PK-SHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIH 153
PK + LDA ++ + A V I+ A+ KA AD ++ N AA+ Q ++H H H
Sbjct: 69 PKKGSRNLLDADTETLFPVIKA-VQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFH 127
Query: 154 IIPR 157
IIPR
Sbjct: 128 IIPR 131
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
DC+FCKI GE P+ K +YE D L D NP++ H L+VPK H+ L P
Sbjct: 5 DCIFCKIANGEIPSTK-----VYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKE 59
Query: 110 VAAMCAKVPLISNAIM--KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 158
+ + + + ++ N I K D F ++ N G+ GQ + H H HI+ K
Sbjct: 60 M-DIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGK 109
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 23/151 (15%)
Query: 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 105
G C+FC + R + + YE D ++D PLS GH L++PK+H L
Sbjct: 3 GSMEGCIFCTLYRKGANII-------YETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNY 55
Query: 106 PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD---- 161
P ++ + + +++ + +N+L NNG Q +FH H H+IP + D
Sbjct: 56 KPEELSGVLDTI----RHLVQKFGFERYNILQNNGNH--QEVFHVHFHVIPFVSADERLM 109
Query: 162 CLWTSESLRRRPLKIDQETSQLADQVREKLS 192
W ++S+ D+E S++ ++ R ++S
Sbjct: 110 INWKAKSVS------DKEYSEMVEEARLRVS 134
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
+CVFCKII+ E P+ + YE + + I D NP + H LI+PK H + + S
Sbjct: 36 NCVFCKIIKRELPSTIY-----YEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESN 90
Query: 110 VAAMCAKVPLISNAIMK--ATDADSFNLLVNNGAAAGQVIFHTHIHII 155
A + + +N + + + L+ N G AAGQ +FH H H++
Sbjct: 91 -AQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLL 137
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S + A +
Sbjct: 15 GDTIFGKIIRKEIPAKI-----IFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDA 69
Query: 109 VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155
+ + + + A + ++VN G+ GQ ++H H+H++
Sbjct: 70 DESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S
Sbjct: 15 GDTIFGKIIRKEIPAKI-----IFEDDQCLAFHDISPQAPTHFLVIPKKHIS-------Q 62
Query: 109 VVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 155
+ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 63 ISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S
Sbjct: 4 GDTIFGKIIRKEIPAKI-----IFEDDQCLAFHDISPQAPTHFLVIPKKHIS-------Q 51
Query: 109 VVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 155
+ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 52 ISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 105
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D L D +P + H L++PK H S + A +
Sbjct: 15 GDTIFGKIIRKEIPAKI-----IFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDA 69
Query: 109 VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155
+ + + + A + ++VN G+ GQ ++H H+H++
Sbjct: 70 DESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
+ C+FCKI + + P+ +YE D D NP++ H L++PK H + L+
Sbjct: 7 DSCIFCKIAQKQIPST-----IVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEE 61
Query: 109 VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 158
A KV + I K + + ++ N G AGQ + H H HI+ K
Sbjct: 62 -NEAFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGK 110
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 15 GDTIFGKIIRKEIPA-----KIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDD 69
Query: 109 ---------VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 70 DESLLGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 14 GDTIFGKIIRKEIPA-----KIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDD 68
Query: 109 ---------VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 69 DESLLGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 115
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D L D +P + H L++PK H S
Sbjct: 15 GDTIFGKIIRKEIPAKI-----IFEDDQALAFHDISPQAPTHFLVIPKKHIS-------Q 62
Query: 109 VVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 155
+ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 63 ISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 15 GDTIFGKIIRKEIPAKI-----IFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDD 69
Query: 109 ---------VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 70 DESLLGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 17 GDTIFGKIIRKEIPAKI-----IFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDD 71
Query: 109 ---------VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 72 DESLLGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 118
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 51 CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 110
+F KII E P +F +YE D + L P++ GH+L+VP+ +
Sbjct: 7 SIFTKIINRELPG-RF----VYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAF 61
Query: 111 AAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP-RKAHDCLWTS--- 166
+ LI A+ KA + L++ AG + H H+H+ P R D + +
Sbjct: 62 NRVMGVSQLIGKAVCKAFRTERSGLII-----AGLEVPHLHVHVFPTRSLSDFGFANVDR 116
Query: 167 ----ESLRRRPLKIDQETSQLA 184
ESL KI +QLA
Sbjct: 117 NPSPESLDEAQAKIKAALAQLA 138
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 61 SPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLI 120
P+V F +L +++ P+ GH L+ P P VA + +
Sbjct: 11 KPSVVFLKTEL-----SFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRV 65
Query: 121 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 161
+ K S + +G AGQ + H H+H++PRKA D
Sbjct: 66 GTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 106
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 61 SPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLI 120
P+V F +L +++ P+ GH L+ P P VA + +
Sbjct: 11 KPSVVFLKTEL-----SFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRV 65
Query: 121 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 161
+ K S +G AGQ + H H+H++PRKA D
Sbjct: 66 GTVVEKHFHGTSLTFSXQDGPEAGQTVKHVHVHVLPRKAGD 106
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 60 ESPAVKFCLLQL------YEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 113
E+ +KF + Y ++ P++ GH L+ PK L + A +
Sbjct: 295 ETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADL 354
Query: 114 CAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 161
+ + K + S + V +G AGQ + H HIHI+PR+A D
Sbjct: 355 FIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGD 402
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 61 SPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLI 120
P+V F +L +++ P+ GH L+ P P VA + +
Sbjct: 11 KPSVVFLKTEL-----SFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRV 65
Query: 121 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 161
+ K S + +G AGQ + H ++H++PRKA D
Sbjct: 66 GTVVEKHFHGTSLTFSMQDGPEAGQTVKHVNVHVLPRKAGD 106
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 77 CLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLL 136
+L+ P + GH ++VP S L+ A + A I + FN+
Sbjct: 93 VYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVG 152
Query: 137 VNNG-AAAGQVIFHTHIHIIPRKAHDC 162
+N G +A G + H H+H++PR D
Sbjct: 153 LNLGTSAGGSLAEHLHVHVVPRWGGDA 179
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
+ +F KIIR E P+ +Y+ D D +P + H LI+P ++
Sbjct: 4 ETIFSKIIRREIPSDI-----VYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEH 58
Query: 110 VAAMCAKVPLISN-AIMKATDADSFNLLVNNGAAAGQVIFHTHIHII------PRKAHDC 162
A+ + + + A + D + L++N GQ ++H H+H++ P AH
Sbjct: 59 EQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHKG 118
Query: 163 L 163
L
Sbjct: 119 L 119
>pdb|3I24|A Chain A, Crystal Structure Of A Hit Family Hydrolase Protein From
Vibrio Fischeri. Northeast Structural Genomics
Consortium Target Id Vfr176
pdb|3I24|B Chain B, Crystal Structure Of A Hit Family Hydrolase Protein From
Vibrio Fischeri. Northeast Structural Genomics
Consortium Target Id Vfr176
Length = 149
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 131 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETS--QLADQVR 188
D+F+ N A G ++ HIH I R D W I ++S QL D +R
Sbjct: 71 DNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLR 130
Query: 189 EKLSNI 194
+KLSNI
Sbjct: 131 DKLSNI 136
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS 108
+ +F KIIR E P+ +Y+ D D +P + H LI+P ++
Sbjct: 3 EETIFSKIIRREIPSDI-----VYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAE 57
Query: 109 VVAAMCAKVPLISN-AIMKATDADSFNLLVNNGAAAGQVIFHTHIHII------PRKAHD 161
A+ + + + A + D + L++N GQ ++H +H++ P AH
Sbjct: 58 HEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPLGPMLAHK 117
Query: 162 CL 163
L
Sbjct: 118 GL 119
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 78 LCILD--TNPLSLG-----------HSLIVPKSHFSCLDATPPSVVAAMCAKVPLI 120
L ILD T+P +LG H++IVPK + L+AT V VPLI
Sbjct: 107 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLI 162
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 119 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 152
+I N I D+ F ++ G AG ++H H+
Sbjct: 219 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 252
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 119 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 152
+I N I D+ F ++ G AG ++H H+
Sbjct: 220 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 253
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 119 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 152
+I N I D+ F ++ G AG ++H H+
Sbjct: 216 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 249
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 119 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 152
+I N I D+ F ++ G AG ++H H+
Sbjct: 257 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 290
>pdb|1MKF|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1MKF|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1ML0|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The P8a Variant Of
Cc-Chemokine Mcp-1
pdb|2NYZ|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NYZ|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NZ1|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|X Chain X, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
Length = 382
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 159 AHDCLWTSESLRRRPLKIDQETSQLADQVR 188
+HD +WTS S + P+++ + SQ QVR
Sbjct: 324 SHDGVWTSTSSEQCPIRLVEGQSQNVLQVR 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,547,130
Number of Sequences: 62578
Number of extensions: 190432
Number of successful extensions: 450
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 36
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)