Query 028565
Match_columns 207
No_of_seqs 179 out of 1306
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0537 Hit Diadenosine tetrap 100.0 4.3E-35 9.3E-40 230.1 15.5 137 49-191 1-137 (138)
2 PRK10687 purine nucleoside pho 100.0 9E-31 1.9E-35 200.8 11.6 106 49-159 3-109 (119)
3 cd01275 FHIT FHIT (fragile his 100.0 5.1E-30 1.1E-34 197.6 13.3 112 51-166 1-112 (126)
4 cd01277 HINT_subgroup HINT (hi 100.0 6.9E-30 1.5E-34 189.3 12.8 103 50-157 1-103 (103)
5 cd01276 PKCI_related Protein K 100.0 3.6E-28 7.7E-33 180.8 11.2 102 50-157 1-104 (104)
6 KOG3275 Zinc-binding protein o 99.9 6.4E-27 1.4E-31 175.3 11.2 108 48-166 15-126 (127)
7 PF01230 HIT: HIT domain; Int 99.9 6.7E-27 1.5E-31 172.6 9.9 96 59-159 2-97 (98)
8 cd01278 aprataxin_related apra 99.9 5.1E-25 1.1E-29 164.1 12.2 102 50-156 1-104 (104)
9 PRK11720 galactose-1-phosphate 99.9 4.3E-25 9.3E-30 196.7 12.2 142 45-190 190-338 (346)
10 cd00608 GalT Galactose-1-phosp 99.9 7.1E-25 1.5E-29 194.2 12.4 142 45-189 180-328 (329)
11 TIGR00209 galT_1 galactose-1-p 99.9 8.4E-25 1.8E-29 194.9 12.4 142 45-190 190-338 (347)
12 cd00468 HIT_like HIT family: H 99.9 5.8E-24 1.2E-28 152.3 10.1 86 71-156 1-86 (86)
13 KOG3379 Diadenosine polyphosph 99.9 2.6E-23 5.6E-28 159.8 13.1 93 70-162 19-111 (150)
14 PLN02643 ADP-glucose phosphory 99.9 3.9E-23 8.4E-28 183.6 12.5 133 45-189 194-331 (336)
15 PF11969 DcpS_C: Scavenger mRN 99.7 5.7E-18 1.2E-22 129.2 7.3 99 50-157 1-104 (116)
16 PF02744 GalP_UDP_tr_C: Galact 99.7 9.9E-17 2.1E-21 129.6 6.1 142 49-194 13-160 (166)
17 COG1085 GalT Galactose-1-phosp 99.6 1.5E-15 3.2E-20 134.0 10.2 148 46-196 182-335 (338)
18 KOG4359 Protein kinase C inhib 99.6 1.4E-14 3E-19 112.1 9.8 117 30-156 16-135 (166)
19 PF04677 CwfJ_C_1: Protein sim 99.4 1.2E-11 2.6E-16 95.2 12.8 103 46-159 8-110 (121)
20 KOG2958 Galactose-1-phosphate 99.3 3.9E-12 8.4E-17 109.5 7.0 141 45-190 195-345 (354)
21 KOG2476 Uncharacterized conser 98.9 8.8E-09 1.9E-13 93.7 11.5 102 46-159 316-418 (528)
22 KOG0562 Predicted hydrolase (H 98.2 1.2E-06 2.5E-11 70.2 2.8 87 71-158 18-106 (184)
23 KOG2477 Uncharacterized conser 97.8 0.00011 2.4E-09 68.1 8.4 105 47-160 405-510 (628)
24 cd00608 GalT Galactose-1-phosp 97.6 0.00033 7.2E-09 62.3 8.9 67 90-156 95-161 (329)
25 PLN03103 GDP-L-galactose-hexos 97.5 0.0004 8.6E-09 63.2 7.6 72 74-156 168-241 (403)
26 KOG3969 Uncharacterized conser 97.4 0.002 4.3E-08 55.8 10.8 87 68-158 160-257 (310)
27 COG4360 APA2 ATP adenylyltrans 97.3 0.00035 7.5E-09 59.4 5.2 72 75-157 92-163 (298)
28 PLN02643 ADP-glucose phosphory 97.3 0.0028 6.1E-08 56.7 11.1 68 89-156 108-175 (336)
29 COG1085 GalT Galactose-1-phosp 97.3 0.0012 2.6E-08 59.0 8.3 65 91-155 97-161 (338)
30 PRK11720 galactose-1-phosphate 97.0 0.0077 1.7E-07 54.1 10.3 65 89-155 106-170 (346)
31 TIGR00209 galT_1 galactose-1-p 96.5 0.028 6.1E-07 50.6 10.6 65 89-155 106-170 (347)
32 KOG2720 Predicted hydrolase (H 96.3 0.0039 8.4E-08 55.6 3.6 69 78-155 169-237 (431)
33 TIGR00672 cdh CDP-diacylglycer 95.9 0.036 7.9E-07 47.6 7.5 80 71-154 57-142 (250)
34 PRK05471 CDP-diacylglycerol py 95.7 0.048 1E-06 46.9 7.6 81 71-155 58-144 (252)
35 PF02611 CDH: CDP-diacylglycer 94.8 0.075 1.6E-06 45.0 5.9 79 73-155 31-115 (222)
36 COG2134 Cdh CDP-diacylglycerol 93.0 0.69 1.5E-05 38.9 8.2 81 71-155 58-144 (252)
37 COG5075 Uncharacterized conser 91.6 0.41 8.9E-06 41.1 5.3 86 68-157 155-251 (305)
38 PF01087 GalP_UDP_transf: Gala 90.9 0.57 1.2E-05 38.2 5.4 67 90-156 112-178 (183)
39 PF13395 HNH_4: HNH endonuclea 89.6 0.25 5.5E-06 32.3 1.9 32 10-41 18-51 (54)
40 PF11296 DUF3097: Protein of u 83.7 0.7 1.5E-05 39.7 1.9 17 3-19 156-172 (275)
41 PRK05270 galactose-1-phosphate 82.2 9.7 0.00021 35.8 8.8 135 47-196 170-336 (493)
42 TIGR01239 galT_2 galactose-1-p 81.9 9.5 0.00021 35.8 8.6 134 48-196 168-333 (489)
43 PF01076 Mob_Pre: Plasmid reco 79.6 7.1 0.00015 32.1 6.5 52 103-161 93-145 (196)
44 PF01844 HNH: HNH endonuclease 75.4 1.9 4.1E-05 26.5 1.5 32 8-39 12-45 (47)
45 KOG2958 Galactose-1-phosphate 70.3 25 0.00054 31.3 7.6 67 88-154 106-174 (354)
46 PRK11295 hypothetical protein; 67.0 3.1 6.7E-05 31.6 1.2 31 7-37 39-71 (113)
47 smart00507 HNHc HNH nucleases. 60.6 5.6 0.00012 24.1 1.4 27 9-35 23-51 (52)
48 PF14317 YcxB: YcxB-like prote 59.5 20 0.00043 22.6 4.0 36 71-116 25-60 (62)
49 PF03432 Relaxase: Relaxase/Mo 57.5 18 0.0004 29.8 4.4 36 120-161 77-115 (242)
50 COG4468 GalT Galactose-1-phosp 52.6 1.1E+02 0.0023 28.6 8.6 133 49-196 174-338 (503)
51 cd00085 HNHc HNH nucleases; HN 52.4 5.7 0.00012 24.6 0.4 29 9-37 25-55 (57)
52 TIGR01865 cas_Csn1 CRISPR-asso 48.9 6.2 0.00013 39.5 0.3 36 9-44 601-638 (805)
53 TIGR02768 TraA_Ti Ti-type conj 43.1 79 0.0017 31.5 6.9 54 104-166 95-150 (744)
54 PF01446 Rep_1: Replication pr 39.5 1.4E+02 0.0029 25.4 7.0 10 146-155 78-87 (233)
55 PF04986 Y2_Tnp: Putative tran 39.1 71 0.0015 25.9 5.0 46 146-192 13-65 (183)
56 smart00538 POP4 A domain found 38.7 52 0.0011 23.8 3.8 36 67-106 30-65 (92)
57 PRK13863 type IV secretion sys 36.4 1.4E+02 0.0031 27.8 6.9 30 122-157 104-139 (446)
58 PRK03879 ribonuclease P protei 35.8 61 0.0013 23.7 3.7 34 67-105 32-65 (96)
59 PRK13889 conjugal transfer rel 34.1 1.8E+02 0.004 30.1 8.0 58 104-167 95-155 (988)
60 PF14394 DUF4423: Domain of un 33.6 94 0.002 25.0 4.9 51 96-156 119-170 (171)
61 TIGR03793 TOMM_pelo TOMM prope 32.6 60 0.0013 22.8 3.1 23 88-113 52-74 (77)
62 PF01868 UPF0086: Domain of un 32.3 83 0.0018 22.5 3.9 30 67-100 31-60 (89)
63 PF09899 DUF2126: Putative ami 31.5 2E+02 0.0044 29.0 7.5 76 116-192 84-164 (819)
64 PRK13878 conjugal transfer rel 24.0 96 0.0021 31.0 3.9 29 122-156 91-121 (746)
65 PF02729 OTCace_N: Aspartate/o 23.3 96 0.0021 24.1 3.1 31 97-127 1-31 (142)
66 PF14009 DUF4228: Domain of un 22.4 1.2E+02 0.0026 23.4 3.6 43 48-95 1-51 (181)
67 COG1588 POP4 RNase P/RNase MRP 22.3 1.4E+02 0.0031 21.9 3.6 35 67-106 34-68 (95)
68 COG1403 McrA Restriction endon 21.3 35 0.00076 25.3 0.3 32 9-40 81-114 (146)
69 KOG1448 Ribose-phosphate pyrop 21.1 59 0.0013 29.0 1.6 20 2-21 210-229 (316)
No 1
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=230.07 Aligned_cols=137 Identities=41% Similarity=0.660 Sum_probs=126.0
Q ss_pred CCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028565 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT 128 (207)
Q Consensus 49 ~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~ 128 (207)
+.|+||+|+.++.|..+ |||++++++|+|.+|.++||+|||||+|+.++.+++++++.+++..++++++++++.+
T Consensus 1 ~~ciFc~ii~~e~~~~~-----Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~ 75 (138)
T COG0537 1 MMCIFCKIIRGEIPANK-----VYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAF 75 (138)
T ss_pred CCceeeeeecCCCCceE-----EEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHH
Q 028565 129 DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKL 191 (207)
Q Consensus 129 ~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~~e~~ela~~lR~~l 191 (207)
++++||+++|+|..+||.|+|+|+|||||+.+|..|+...|....... +++++++++|+++|
T Consensus 76 ~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~~~~~~~-~~l~~~~~~i~~~l 137 (138)
T COG0537 76 GADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWGTKVEPN-EELEELAEKIRKAL 137 (138)
T ss_pred CCCceEEEEecCcccCcCcceEEEEEcCCcCCCCCcccccccccCCcH-HHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998877776522222 66999999999765
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.97 E-value=9e-31 Score=200.78 Aligned_cols=106 Identities=22% Similarity=0.443 Sum_probs=98.1
Q ss_pred CCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH-HH
Q 028565 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM-KA 127 (207)
Q Consensus 49 ~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~-~~ 127 (207)
++|+||+|++++.|..+ |||+|.+++|+|.+|.++||+||+||+|+.++.||+++++.+++.+++.+.+.++ +.
T Consensus 3 ~~CiFC~I~~g~~p~~~-----v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~ 77 (119)
T PRK10687 3 EETIFSKIIRREIPSDI-----VYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEG 77 (119)
T ss_pred CCCchhhhhcCCCCCCE-----EEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999887 9999999999999999999999999999999999999999999998887777665 34
Q ss_pred cCCCceEEEEecCCCCCCccCeEEEEEecccC
Q 028565 128 TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 159 (207)
Q Consensus 128 ~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~ 159 (207)
+++++||+++|+|+.+||+|+|+|+|||||+.
T Consensus 78 ~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 78 IAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred CCCCceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 67889999999999999999999999999877
No 3
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.97 E-value=5.1e-30 Score=197.64 Aligned_cols=112 Identities=31% Similarity=0.560 Sum_probs=105.0
Q ss_pred ccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 028565 51 CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA 130 (207)
Q Consensus 51 C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~ 130 (207)
|+||++++++.+. .++|||++.++|+++.+|.++||+||+||+|+.++.+|+++++.+++.++.++.+++++.+++
T Consensus 1 C~fC~i~~~e~~~----~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~ 76 (126)
T cd01275 1 CVFCDIPIKPDED----NLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKP 76 (126)
T ss_pred CccccCccCCCcc----ccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988752 145999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEecccCCCCCCcc
Q 028565 131 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 166 (207)
Q Consensus 131 ~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~ 166 (207)
.+||+++|+|+.+||+++|+|+|||||+.+|.+|..
T Consensus 77 ~~~n~~~~~g~~~gq~v~H~HiHiiPR~~~d~~~~~ 112 (126)
T cd01275 77 DGFNIGINDGKAGGGIVPHVHIHIVPRWNGDTNFMP 112 (126)
T ss_pred CceEEEEeCCcccCCCcCEEEEEEeCCcCCCCCCCC
Confidence 999999999999999999999999999999987653
No 4
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.97 E-value=6.9e-30 Score=189.27 Aligned_cols=103 Identities=50% Similarity=0.872 Sum_probs=99.0
Q ss_pred CccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028565 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD 129 (207)
Q Consensus 50 ~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~ 129 (207)
+|+||++++++.+..+ |+|+++|+||++.+|.+|||++|+||+|+.++.+|+++++.+|+.+++++.+++++.++
T Consensus 1 ~C~~c~ii~~e~~~~i-----v~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~ 75 (103)
T cd01277 1 DCIFCKIIAGEIPSYK-----VYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALK 75 (103)
T ss_pred CCccccccCCCCCCCE-----EEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999876655 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEecc
Q 028565 130 ADSFNLLVNNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 130 ~~~~ni~~n~g~~~gq~v~HlHlHVIPR 157 (207)
+++||+++|+|+..||+++|+|+||+||
T Consensus 76 ~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 76 ADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred CCceEEEEeCCcccCcccCEEEEEEccC
Confidence 9999999999999999999999999998
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.95 E-value=3.6e-28 Score=180.85 Aligned_cols=102 Identities=36% Similarity=0.664 Sum_probs=92.1
Q ss_pred CccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028565 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD 129 (207)
Q Consensus 50 ~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~ 129 (207)
+|+||++++++.+..+ |||++.+++|+|.+|.++||+||+||+|+.++.+|+++++.++..+++.+ +.+.+.++
T Consensus 1 ~C~fc~i~~~e~~~~i-----v~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~ 74 (104)
T cd01276 1 DCIFCKIIRGEIPAKK-----VYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLG 74 (104)
T ss_pred CCcceecccCCCccCE-----EEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhC
Confidence 4999999999877655 99999999999999999999999999999999999998888888888777 55555566
Q ss_pred --CCceEEEEecCCCCCCccCeEEEEEecc
Q 028565 130 --ADSFNLLVNNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 130 --~~~~ni~~n~g~~~gq~v~HlHlHVIPR 157 (207)
+.+||+++|+|+.+||+++|+|+|||++
T Consensus 75 ~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 75 IAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 6899999999999999999999999986
No 6
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.94 E-value=6.4e-27 Score=175.26 Aligned_cols=108 Identities=30% Similarity=0.617 Sum_probs=91.1
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL---DATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l---~dL~~ee~~el~~~~~~v~~~l 124 (207)
+..|+||+|+.+++|..+ |||++.+++|.|..|.+|+|+|||||+|++.+ .|.+++.+..++...+++
T Consensus 15 ~~~tIF~kIi~keIPa~i-----i~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~v---- 85 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKI-----IFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKV---- 85 (127)
T ss_pred CCCcEeeeeecccCCcce-----EeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHH----
Confidence 678999999999999988 99999999999999999999999999995554 566667766666655444
Q ss_pred HHHcCCC-ceEEEEecCCCCCCccCeEEEEEecccCCCCCCcc
Q 028565 125 MKATDAD-SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 166 (207)
Q Consensus 125 ~~~~~~~-~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~ 166 (207)
.+.+|.. |||+++|+|+.++|+|+|+|+||+|+.. ..||+
T Consensus 86 ak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrq--m~WPp 126 (127)
T KOG3275|consen 86 AKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQ--MQWPP 126 (127)
T ss_pred HHHhCcccceeEEEcCCcccceEEEEEEEEEeCCcc--cCCCC
Confidence 5555774 6999999999999999999999999544 35765
No 7
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.94 E-value=6.7e-27 Score=172.58 Aligned_cols=96 Identities=41% Similarity=0.682 Sum_probs=89.4
Q ss_pred CCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Q 028565 59 GESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVN 138 (207)
Q Consensus 59 ~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n 138 (207)
++.|..+ |||++.++||++.+|..+||+||+||+|+.++.+|+++++.+|+..++++++++++.+++++||+.+|
T Consensus 2 ~e~~~~v-----v~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ 76 (98)
T PF01230_consen 2 GEIPARV-----VYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIIN 76 (98)
T ss_dssp TSSHCEE-----EEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCCeeE-----EEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeecccc
Confidence 4555555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCeEEEEEecccC
Q 028565 139 NGAAAGQVIFHTHIHIIPRKA 159 (207)
Q Consensus 139 ~g~~~gq~v~HlHlHVIPR~~ 159 (207)
+|+.+||+++|+|+|||||++
T Consensus 77 ~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 77 NGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp ESGGGTSSSSS-EEEEEEEST
T ss_pred chhhhcCccCEEEEEEecccC
Confidence 999999999999999999985
No 8
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.93 E-value=5.1e-25 Score=164.06 Aligned_cols=102 Identities=25% Similarity=0.425 Sum_probs=90.6
Q ss_pred CccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH--
Q 028565 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA-- 127 (207)
Q Consensus 50 ~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~-- 127 (207)
.|+||+|++++.+. +.++||+++.+++|.|.+|.++||+||+||+|+.++.+|+++++.+++..++.+.+.+++.
T Consensus 1 ~c~fc~i~~~e~~~---~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 77 (104)
T cd01278 1 LCHFCDIAKRRDPD---PEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDN 77 (104)
T ss_pred CCccccCccCCCCC---CccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcC
Confidence 49999999987642 2356999999999999999999999999999999999999999999999999887778776
Q ss_pred cCCCceEEEEecCCCCCCccCeEEEEEec
Q 028565 128 TDADSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 128 ~~~~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
+++++||+++|.++. |+++|+|+|||.
T Consensus 78 ~~~~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 78 TDPSEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred CCccCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 567899999999875 899999999983
No 9
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.92 E-value=4.3e-25 Score=196.70 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=116.7
Q ss_pred CCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028565 45 SGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 45 ~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l 124 (207)
....+.|+||+|++++.+... ++|||+++|+||+|.+|..|||+||+||+|+.+|.+|+++++.+|+.+++++.+++
T Consensus 190 ~~~~g~Clfcdii~~E~~~~~---RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l 266 (346)
T PRK11720 190 FAEHGSPLLVDYVQRELADGE---RIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRY 266 (346)
T ss_pred HHHcCCeEHHHHHHhhhhcCC---eEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHH
Confidence 355678999999999876422 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-ceEEEEecCCCCC--CccCeEEEEEecccC---CCCCCccccccCCCCCCCH-HHHHHHHHHHHH
Q 028565 125 MKATDAD-SFNLLVNNGAAAG--QVIFHTHIHIIPRKA---HDCLWTSESLRRRPLKIDQ-ETSQLADQVREK 190 (207)
Q Consensus 125 ~~~~~~~-~~ni~~n~g~~~g--q~v~HlHlHVIPR~~---~d~~w~~~~~~~~~~~~~~-e~~ela~~lR~~ 190 (207)
++.++.+ .||+++|+++..| +.++|+|+||+||+. +...|..+... .+..+++ ..|+.|++||++
T Consensus 267 ~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aGfE~-~g~~in~~~PE~aA~~LR~~ 338 (346)
T PRK11720 267 DNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVGYEM-LAETQRDLTAEQAAERLRAV 338 (346)
T ss_pred HHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceeeeec-ccCccCCCCHHHHHHHHhhc
Confidence 9999765 6999999998755 568999999999964 32334332211 2334444 478889999984
No 10
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.92 E-value=7.1e-25 Score=194.22 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=116.9
Q ss_pred CCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028565 45 SGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 45 ~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l 124 (207)
....+.|+||+|++++.+.. .+||||+++|++|++..|.+|||+||+||+|+.++.+|+++++.+|+.+++++.+++
T Consensus 180 ~~~~g~clfcdii~~E~~~~---~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l 256 (329)
T cd00608 180 YEKHGRCLLCDYLKLELESK---ERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARY 256 (329)
T ss_pred HHHcCCccHHHHHHhhhhcC---CeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHH
Confidence 35567899999999887532 267999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC-CCceEEEEecCCCCC----CccCeEEEEEecccCCCCC-CccccccCCCCCCCH-HHHHHHHHHHH
Q 028565 125 MKATD-ADSFNLLVNNGAAAG----QVIFHTHIHIIPRKAHDCL-WTSESLRRRPLKIDQ-ETSQLADQVRE 189 (207)
Q Consensus 125 ~~~~~-~~~~ni~~n~g~~~g----q~v~HlHlHVIPR~~~d~~-w~~~~~~~~~~~~~~-e~~ela~~lR~ 189 (207)
.+.++ ..+||+++|+++..+ +.++|+|+||+||+..+.. |...........+++ .+++.|++||+
T Consensus 257 ~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aGfE~~~g~~in~~~PE~aA~~LR~ 328 (329)
T cd00608 257 DNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAGFELGAGEFINDVTPEQAAARLRE 328 (329)
T ss_pred HHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEEeeccCCCccCCCCHHHHHHHHhc
Confidence 99999 568999999998764 6889999999999875432 322211112233344 58999999986
No 11
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.92 E-value=8.4e-25 Score=194.90 Aligned_cols=142 Identities=9% Similarity=0.098 Sum_probs=116.2
Q ss_pred CCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028565 45 SGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 45 ~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l 124 (207)
....+.|+||+|++++.+.. .+||||+++|+||+|.+|.++||+||+||+|+.+|.+|+++++.+|+.+++++.+++
T Consensus 190 ~~~~g~clfcdIi~~E~~~~---~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l 266 (347)
T TIGR00209 190 FAEHKSPMLVDYVKRELADK---SRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKY 266 (347)
T ss_pred HHHcCCccHHHHHHhHhhcC---CeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHH
Confidence 35568899999999887432 266999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-ceEEEEecCCCCCC--ccCeEEEEEecccC---CCCCCccccccCCCCCCCH-HHHHHHHHHHHH
Q 028565 125 MKATDAD-SFNLLVNNGAAAGQ--VIFHTHIHIIPRKA---HDCLWTSESLRRRPLKIDQ-ETSQLADQVREK 190 (207)
Q Consensus 125 ~~~~~~~-~~ni~~n~g~~~gq--~v~HlHlHVIPR~~---~d~~w~~~~~~~~~~~~~~-e~~ela~~lR~~ 190 (207)
.+.++.+ +||+++|+++..|+ ..+|+|+||+||.. ++..|.+.... .+..+++ ..|+.|++||+.
T Consensus 267 ~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~-~g~~in~~~PE~aA~~LR~~ 338 (347)
T TIGR00209 267 DNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEM-LGETQRDLTAEQAAERLRAL 338 (347)
T ss_pred HHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhh-hcCccCCCCHHHHHHHHHhc
Confidence 9999664 89999999998776 45779999999964 22224332211 3344444 488899999987
No 12
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.91 E-value=5.8e-24 Score=152.25 Aligned_cols=86 Identities=27% Similarity=0.531 Sum_probs=84.1
Q ss_pred EEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeE
Q 028565 71 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHT 150 (207)
Q Consensus 71 V~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~Hl 150 (207)
|||+++++||+|.+|.++||+||+||+|+.++.+|+++++.+++..++++.+++++.++.+++|+.+|+|+.+||+++|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 028565 151 HIHIIP 156 (207)
Q Consensus 151 HlHVIP 156 (207)
|+||||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 13
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.90 E-value=2.6e-23 Score=159.85 Aligned_cols=93 Identities=27% Similarity=0.489 Sum_probs=90.9
Q ss_pred eEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCe
Q 028565 70 QLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFH 149 (207)
Q Consensus 70 iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H 149 (207)
|+|++++.+||.+..|..|||+||+|+|-++.|.||+.+|..+|+..++++.+.|++.++...+++.+++|+.+||+|+|
T Consensus 19 VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpH 98 (150)
T KOG3379|consen 19 VFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPH 98 (150)
T ss_pred EEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccce
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCC
Q 028565 150 THIHIIPRKAHDC 162 (207)
Q Consensus 150 lHlHVIPR~~~d~ 162 (207)
+|+||+||+.+|-
T Consensus 99 vHvHIlPR~~gDf 111 (150)
T KOG3379|consen 99 VHVHILPRKAGDF 111 (150)
T ss_pred eEEEEcccccccc
Confidence 9999999999885
No 14
>PLN02643 ADP-glucose phosphorylase
Probab=99.89 E-value=3.9e-23 Score=183.60 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=111.0
Q ss_pred CCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028565 45 SGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 45 ~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l 124 (207)
....+.|+||+|++++. + |||+++|+||++.+|..|||+||+||+|+.+|.+|+++++.+|+.+++++.+++
T Consensus 194 ~~~~g~Clfcdii~~E~---i-----V~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l 265 (336)
T PLN02643 194 FEKTGKCSLCEVVKKDL---L-----IDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKI 265 (336)
T ss_pred HHHhCCCcHHHHHhCcc---E-----EEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHH
Confidence 35568899999998775 4 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceEEEEecCCCC--CCc--cCeEEEEEecccCCCCCCccccccCCCCCCCH-HHHHHHHHHHH
Q 028565 125 MKATDADSFNLLVNNGAAA--GQV--IFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQ-ETSQLADQVRE 189 (207)
Q Consensus 125 ~~~~~~~~~ni~~n~g~~~--gq~--v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~~-e~~ela~~lR~ 189 (207)
.+.++..+||+++|+++.. ++. ..|||+||+||.+...+|-. ..+..+++ ..|+.|++||+
T Consensus 266 ~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~~aGfEl----g~g~~in~~~PE~aA~~LR~ 331 (336)
T PLN02643 266 SKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSGVGGFEL----GTGCYINPVFPEDAAKVLRE 331 (336)
T ss_pred HHhcCCCCceeeeecCCCccccCcccceEEEEEEecCcCCccceec----cCCCeeCCCCHHHHHHHHHh
Confidence 9999988999999999973 443 46777899999876444311 11222333 47888999986
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.73 E-value=5.7e-18 Score=129.22 Aligned_cols=99 Identities=28% Similarity=0.528 Sum_probs=74.3
Q ss_pred CccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecC-CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028565 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKS-HFSCLDATPPSVVAAMCAKVPLISNAIMKAT 128 (207)
Q Consensus 50 ~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkr-Hv~~l~dL~~ee~~el~~~~~~v~~~l~~~~ 128 (207)
+|+||.|.+++.+..+ +|+++.+++|.|.+|.++.|+|||||+ |+.++.+|+.+.+.-|......+.+.+++.+
T Consensus 1 ~cif~~i~~~~~~~~v-----ly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~ 75 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERV-----LYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEY 75 (116)
T ss_dssp HHHHHHHTTSSSGGGE-----SEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEeEcCCCCCcE-----EEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4999999998887765 999999999999999999999999999 9999999998876555555455555666655
Q ss_pred C----CCceEEEEecCCCCCCccCeEEEEEecc
Q 028565 129 D----ADSFNLLVNNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 129 ~----~~~~ni~~n~g~~~gq~v~HlHlHVIPR 157 (207)
. ...++++++.. ++++|+|+|||..
T Consensus 76 ~~~~~~~~~~~gfH~~----PS~~HLHlHvi~~ 104 (116)
T PF11969_consen 76 PGDLDSDDIRLGFHYP----PSVYHLHLHVISP 104 (116)
T ss_dssp -TT-EGGGEEEEEESS-----SSSS-EEEEEET
T ss_pred ccccchhhhcccccCC----CCcceEEEEEccC
Confidence 3 23588888754 5899999999974
No 16
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.66 E-value=9.9e-17 Score=129.60 Aligned_cols=142 Identities=17% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028565 49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT 128 (207)
Q Consensus 49 ~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~ 128 (207)
+.|+||++++-+.... .+||+++++|++|.+.....|..++|+||+|+.+|.+|+++|..+|+..++.+.+.+.+.|
T Consensus 13 Gs~L~~D~~~~E~~~~---~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf 89 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEG---ERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLF 89 (166)
T ss_dssp SS-HHHHHHHHHHHH----TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHhhcCC---CEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccC
Confidence 7899999988665433 3889999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceEEEEecCCCCCCcc-CeEEEEEec--ccCCC-CCCcccc-ccCCCCCCCHHHHHHHHHHHHHHhcc
Q 028565 129 DA-DSFNLLVNNGAAAGQVI-FHTHIHIIP--RKAHD-CLWTSES-LRRRPLKIDQETSQLADQVREKLSNI 194 (207)
Q Consensus 129 ~~-~~~ni~~n~g~~~gq~v-~HlHlHVIP--R~~~d-~~w~~~~-~~~~~~~~~~e~~ela~~lR~~l~~~ 194 (207)
+. ..|++++++.|..+..- .++|+|+-| .++.. ..+..+. ..... ..|...++.|.+||+++..+
T Consensus 90 ~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~~~ir~~~i~k~~vG~e~l~~~-~~d~~pE~~a~~Lr~~~~~~ 160 (166)
T PF02744_consen 90 ETSFPYNMGIHQAPVNGEDPEHWFHPHFEPPHIRSENIGKFEVGLEILPGR-LRDETPEQAAALLRNELSDV 160 (166)
T ss_dssp TS---EEEEEE---SSSS--TT--EEEEE--BESSTTEB----THHHHT-E-EESS-HHHHHHHHH-TS-SS
T ss_pred CCCCCCchhhhcCCCCcccchhhhhcccccccccccccceeeeeHhhhhhh-hcccCHHHHHHHHhhhhHHH
Confidence 85 58999999998766543 225555443 33322 2333221 11111 11234677788888555543
No 17
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.63 E-value=1.5e-15 Score=133.97 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=116.5
Q ss_pred CCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 46 ~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
..++.|.||+++..+... +.|+|+++++|++|.+..+..|.+++|+||+|+..+.+|++++..+|+.++..+...+.
T Consensus 182 ~~~~~~~~~~~ve~E~~~---~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~ 258 (338)
T COG1085 182 EENGSCMYCDLVEREKGD---GERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYD 258 (338)
T ss_pred HhcCCchHHHHHHHHhcc---CceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 678899999999877543 34789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-ceEEEEecCCCC-CCccCeEEEEEec---ccCCCCCCccccccCCCCCC-CHHHHHHHHHHHHHHhcccc
Q 028565 126 KATDAD-SFNLLVNNGAAA-GQVIFHTHIHIIP---RKAHDCLWTSESLRRRPLKI-DQETSQLADQVREKLSNICE 196 (207)
Q Consensus 126 ~~~~~~-~~ni~~n~g~~~-gq~v~HlHlHVIP---R~~~d~~w~~~~~~~~~~~~-~~e~~ela~~lR~~l~~~~~ 196 (207)
+.++.. .|+++++..+.. .+.-+|+|+|++| |...-..|............ +...++.|++||+.+.++..
T Consensus 259 ~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~~~~~pEeaA~~LR~~~~~~~~ 335 (338)
T COG1085 259 NLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFIRDVTPEEAAERLRERSAEIHY 335 (338)
T ss_pred hccCCCCceeeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceeeccCCHHHHHHHHHHhhhcccc
Confidence 999876 699999887654 2345899999999 55544323221111111111 23589999999999876543
No 18
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=112.13 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=86.8
Q ss_pred chhhhhhhcccCCCCCCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHH
Q 028565 30 SASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109 (207)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee 109 (207)
+.+.|+.+--. ...+..|.||+|+..+.+... .+..|++.+++|.|++|.+..|.||+||+|+.+..+|..+.
T Consensus 16 si~~c~~~e~~----~~~~~~C~FCDia~r~~~~~e---ll~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~ 88 (166)
T KOG4359|consen 16 SVGTCEAAEKS----PEPKSTCVFCDIAGRQDPGTE---LLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQ 88 (166)
T ss_pred EEeeeeccccc----cCCCCceEEEEeecccCCCCc---eeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhh
Confidence 56778765322 245568999999876654433 56789999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHH-HHHHHcCC--CceEEEEecCCCCCCccCeEEEEEec
Q 028565 110 VAAMCAKVPLISN-AIMKATDA--DSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 110 ~~el~~~~~~v~~-~l~~~~~~--~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
. .|.+.+.+..+ .+.+.... +...++++..| .-+|.|+|+|+|-
T Consensus 89 V-~Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPP--f~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 89 V-ELVENMVTVGKTILERNNFTDFTNVRMGFHLPP--FCSVSHLHLHVIA 135 (166)
T ss_pred H-HHHHHHHHHHHHHHHHhccCCchheeEeccCCC--cceeeeeeEeeec
Confidence 5 45554434443 44444433 34678887754 4789999999984
No 19
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.38 E-value=1.2e-11 Score=95.15 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=77.4
Q ss_pred CCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 46 ~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
...++|+||- .+.+. ++++||.-++++|+.++.+|..+||+||+|..|+.++.+++++.+.|+....+.+.+...
T Consensus 8 ~~~~~C~fCl-~n~~~----~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~ 82 (121)
T PF04677_consen 8 KAPDNCWFCL-SNPNV----EKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFA 82 (121)
T ss_pred CCCCCCCCcc-CCCCc----cceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899995 33333 456789999999999999999999999999999999999999999888776655554443
Q ss_pred HHcCCCceEEEEecCCCCCCccCeEEEEEecccC
Q 028565 126 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 159 (207)
Q Consensus 126 ~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~ 159 (207)
+ .|.+ . +.+-.. .....|+|+++||...
T Consensus 83 ~-~~~~-v-vf~E~~---~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 83 S-QGKD-V-VFFERV---RKRNPHTHIQCVPVPK 110 (121)
T ss_pred H-cCCC-E-EEEEEe---CCCCcEEEEEEEEcCH
Confidence 3 2332 2 333221 3446899999999643
No 20
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.31 E-value=3.9e-12 Score=109.47 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=105.7
Q ss_pred CCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028565 45 SGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 45 ~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l 124 (207)
....+.|.+-+.+.-|.. .+.+||.|+++|+++.++....|+.+|||||+|+..|.+|++-+..+|+.+++.+...+
T Consensus 195 fe~hgk~ll~dy~~~E~l---~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Ky 271 (354)
T KOG2958|consen 195 FEEHGKCLLMDYVKQEAL---EKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKY 271 (354)
T ss_pred HHHcCCchHHHHHHHHHh---hhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHH
Confidence 466778888444333321 34578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-CceEEEEecCCCCC--Cc-cCe-EEEEEec---ccCCCCCCccc--cccCCCCCCCHHHHHHHHHHHHH
Q 028565 125 MKATDA-DSFNLLVNNGAAAG--QV-IFH-THIHIIP---RKAHDCLWTSE--SLRRRPLKIDQETSQLADQVREK 190 (207)
Q Consensus 125 ~~~~~~-~~~ni~~n~g~~~g--q~-v~H-lHlHVIP---R~~~d~~w~~~--~~~~~~~~~~~e~~ela~~lR~~ 190 (207)
.+.|.. ..|+++++..|..+ +. -.| +|+|.+| |..+-..|..+ .+.....++ ..++.|++||+.
T Consensus 272 dnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyppllrsatV~kF~vG~e~l~epqrdl--tpEqaAk~lrel 345 (354)
T KOG2958|consen 272 DNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLRSATVRKFLVGYEMLAEPQRDL--TPEQAAKRLREL 345 (354)
T ss_pred HHhhccCCccccccccCCcccccccccchhhhhhccccchhhccccceeechhhhcCccccC--CHHHHHHHHHhc
Confidence 999988 57999999887643 22 245 5888876 55555555432 222222222 356778888864
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=8.8e-09 Score=93.72 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 46 ~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
...+.||||- .+-+ +++++||.-++++|+-++++|.+.+|+||||..|++++..|+++.+.+ +.+...+|+
T Consensus 316 ~~pg~CwFCL-SnP~----vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~E----i~kykaal~ 386 (528)
T KOG2476|consen 316 IPPGSCWFCL-SNPN----VEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQE----INKYKAALR 386 (528)
T ss_pred CCCCceEEEe-cCCC----hhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHH----HHHHHHHHH
Confidence 4457899995 3433 367789999999999999999999999999999999999999766654 444556666
Q ss_pred HHcCCCc-eEEEEecCCCCCCccCeEEEEEecccC
Q 028565 126 KATDADS-FNLLVNNGAAAGQVIFHTHIHIIPRKA 159 (207)
Q Consensus 126 ~~~~~~~-~ni~~n~g~~~gq~v~HlHlHVIPR~~ 159 (207)
+.|...+ .-+++-. .....-|+|+.+||..+
T Consensus 387 ~myk~~g~~~vvfE~---~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 387 KMYKKQGKDAVVFER---QSYRSVHLQLQVIPVPK 418 (528)
T ss_pred HHHHhcCCeEEEEEe---ecccceeeEEEEEeccc
Confidence 6665433 3333321 11224699999999755
No 22
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=98.17 E-value=1.2e-06 Score=70.18 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred EEEC-CeEEEEEcCCCCCceEEEEEec-CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccC
Q 028565 71 LYEY-DTCLCILDTNPLSLGHSLIVPK-SHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIF 148 (207)
Q Consensus 71 V~e~-e~~~a~l~~~p~~~GH~LViPk-rHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~ 148 (207)
+.+. |.++++.|.+|.+..|+||+|| .-+.++...-.+. .++...+..+...+...++.......++.|-+++.++.
T Consensus 18 ~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~-l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~HavPSM~ 96 (184)
T KOG0562|consen 18 YIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEH-LSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHAVPSMN 96 (184)
T ss_pred eccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHH-hhHhHHHhhcCchHHHHhcchhhhhheeeeeccCcchh
Confidence 4444 7999999999999999999996 3355555444444 35556666666555555554322222344445788899
Q ss_pred eEEEEEeccc
Q 028565 149 HTHIHIIPRK 158 (207)
Q Consensus 149 HlHlHVIPR~ 158 (207)
++|+|||...
T Consensus 97 ~LHLHVISkD 106 (184)
T KOG0562|consen 97 NLHLHVISKD 106 (184)
T ss_pred heeEEEeecc
Confidence 9999999753
No 23
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00011 Score=68.11 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=71.2
Q ss_pred CCCCccccccccCCCCccccceeeEEECCeEEEEEcCC-CCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTN-PLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~-p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
..+.|+||-- ....| ++.||.-+...|+.++-. +...|||+|+|-.|..+-..|++++|.++-....-++..+.
T Consensus 405 ~lD~C~rCfd-s~klp----khlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfa 479 (628)
T KOG2477|consen 405 VLDTCPRCFD-SEKLP----KHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFA 479 (628)
T ss_pred Hhhhchhhhc-ccccc----cceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 3478999953 22333 345688888888888754 57899999999999999999999999887666644433333
Q ss_pred HHcCCCceEEEEecCCCCCCccCeEEEEEecccCC
Q 028565 126 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAH 160 (207)
Q Consensus 126 ~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~ 160 (207)
.. +-+- |++-+.+. -+.-+|+-+|-||..+.
T Consensus 480 s~-n~dv--iFyE~a~~-l~rrpH~~IeCIPvpqe 510 (628)
T KOG2477|consen 480 SM-NLDV--IFYENAPS-LQRRPHTAIECIPVPQE 510 (628)
T ss_pred hc-CCCe--EEEeccCc-cccCCceeEEEeechHH
Confidence 32 2221 23333222 24479999999997654
No 24
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.61 E-value=0.00033 Score=62.35 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=50.6
Q ss_pred EEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEec
Q 028565 90 HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 90 H~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
.++|..-+|..++.+++.+++..++.....-...+.+.-+..-+.++.|.|+.+|.++.|-|.+|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 6788889999999999999888777766554444443212223456779999999999999999863
No 25
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.47 E-value=0.0004 Score=63.25 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCCCceEEEEEecC--CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEE
Q 028565 74 YDTCLCILDTNPLSLGHSLIVPKS--HFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTH 151 (207)
Q Consensus 74 ~e~~~a~l~~~p~~~GH~LViPkr--Hv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlH 151 (207)
+....++.+.+|+.+||+|++|+. |.+.. ++.+-+ .++..+....+..+|.+++|. .-+..+++|+|
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~--i~~~~l--------~la~~~a~~~~~p~frvgYNS-lGA~ASvNHLH 236 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQR--IDPDSF--------LLALYMAAEANNPYFRVGYNS-LGAFATINHLH 236 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeE--ecHHHH--------HHHHHHHHhcCCCcEEEEecC-CccccCcceee
Confidence 555688999999999999999875 55544 444322 122222333355678888876 44556899999
Q ss_pred EEEec
Q 028565 152 IHIIP 156 (207)
Q Consensus 152 lHVIP 156 (207)
+|..-
T Consensus 237 FQa~y 241 (403)
T PLN03103 237 FQAYY 241 (403)
T ss_pred eeecc
Confidence 99864
No 26
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.002 Score=55.81 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=62.7
Q ss_pred eeeEEECC----eEEEEEcCC----CCCceEEEEEecCC-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--ceEEE
Q 028565 68 LLQLYEYD----TCLCILDTN----PLSLGHSLIVPKSH-FSCLDATPPSVVAAMCAKVPLISNAIMKATDAD--SFNLL 136 (207)
Q Consensus 68 ~~iV~e~e----~~~a~l~~~----p~~~GH~LViPkrH-v~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~--~~ni~ 136 (207)
.+|||++. .|+++.|.+ ..-.-|+|.|-.++ +.++.||.++.+.-|..+-.+...++...||.+ ...+.
T Consensus 160 driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf 239 (310)
T KOG3969|consen 160 DRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMF 239 (310)
T ss_pred cceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEE
Confidence 46788763 456665532 22344666666555 999999999998777788888888999888764 47777
Q ss_pred EecCCCCCCccCeEEEEEeccc
Q 028565 137 VNNGAAAGQVIFHTHIHIIPRK 158 (207)
Q Consensus 137 ~n~g~~~gq~v~HlHlHVIPR~ 158 (207)
++. -.+-+|+|+||++..
T Consensus 240 ~HY----qPSyYHlHVHi~nik 257 (310)
T KOG3969|consen 240 FHY----QPSYYHLHVHIVNIK 257 (310)
T ss_pred EEe----cCceEEEEEEEEecc
Confidence 764 356799999999943
No 27
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00035 Score=59.43 Aligned_cols=72 Identities=26% Similarity=0.308 Sum_probs=55.5
Q ss_pred CeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEE
Q 028565 75 DTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHI 154 (207)
Q Consensus 75 e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHV 154 (207)
+....+++++|..+.|+|||.++--..=+.|+..++.....++ .+.+| -+++|.||.+|.+.+|-|+.+
T Consensus 92 ~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL----------~~ldg-lvFYNsGp~aGaSq~HkHLQi 160 (298)
T COG4360 92 DTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVL----------CGLDG-LVFYNSGPIAGASQDHKHLQI 160 (298)
T ss_pred hhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHH----------hcccc-eEEecCCCCcCcCCCccceeE
Confidence 4556778999999999999999876666667877665333332 24455 367899999999999999999
Q ss_pred ecc
Q 028565 155 IPR 157 (207)
Q Consensus 155 IPR 157 (207)
+|.
T Consensus 161 ~pm 163 (298)
T COG4360 161 VPM 163 (298)
T ss_pred eec
Confidence 984
No 28
>PLN02643 ADP-glucose phosphorylase
Probab=97.32 E-value=0.0028 Score=56.70 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=50.5
Q ss_pred eEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEec
Q 028565 89 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 89 GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
-.++|-.-+|..++.+|+.+++..++...+.-...|.+.-+..-+.++-|.|+.+|.+.+|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 35677778999999999999988877766544444433322223556779999999999999999863
No 29
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=97.29 E-value=0.0012 Score=58.97 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=53.4
Q ss_pred EEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEe
Q 028565 91 SLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155 (207)
Q Consensus 91 ~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVI 155 (207)
++|-...|..++.+|+.+++.++..+.+...+.|.+.-...-+.++.|.|+.+|.+.+|-|..|+
T Consensus 97 VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~ 161 (338)
T COG1085 97 VIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIV 161 (338)
T ss_pred EEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCccee
Confidence 56667789999999999999998888887777776664334467788999999999999999985
No 30
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.96 E-value=0.0077 Score=54.15 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=51.8
Q ss_pred eEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEe
Q 028565 89 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155 (207)
Q Consensus 89 GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVI 155 (207)
-.++|-.-+|..+|.+|+.+++..++.+.+.-...|.+. ..-+.++-|.|+.+|.+..|-|-.|+
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~ 170 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIW 170 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeee
Confidence 457777889999999999999988888776665666554 23345677999999999999999986
No 31
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=96.53 E-value=0.028 Score=50.57 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred eEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEe
Q 028565 89 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155 (207)
Q Consensus 89 GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVI 155 (207)
-.++|-.-+|-.++.+|+.+++..++.+.+.-...|.+ +..-+.++-|.|..+|.+.+|-|-.|+
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~ 170 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIW 170 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeee
Confidence 35677778999999999999988887777665555552 222345566899999999999999986
No 32
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=96.30 E-value=0.0039 Score=55.63 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=44.6
Q ss_pred EEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEe
Q 028565 78 LCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155 (207)
Q Consensus 78 ~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVI 155 (207)
+|..+..|+..||+||||+---..-.-++-+.+ +++-.+......+.|++++|. ..+..+|.|+|+|.+
T Consensus 169 vvaIN~sPie~~H~LiiP~V~kc~pQrit~~al--------~lav~~m~~~dd~~frlgyNS-lga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRVLKCLPQRITHKAL--------LLAVTMMAEADDPYFRLGYNS-LGAFASVNHLHFHAY 237 (431)
T ss_pred eEEEecCccccCcEEEecchhccCcceeeHHHH--------HHHHHHHHhcCCchhheeccc-chhhhhhhhhhhhhh
Confidence 778899999999999999865443333443322 122222333344457788765 224578999999975
No 33
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=95.90 E-value=0.036 Score=47.56 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=51.4
Q ss_pred EEECCeEEEEEcCCCCCceEEEEEecCCcCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCC
Q 028565 71 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDA---T---PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAG 144 (207)
Q Consensus 71 V~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~d---L---~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g 144 (207)
|.....++++.|. ..+.|.|+||-..++-+.+ + ++.-|.+-+..=..+.+.+.+-+....+.+.+|. ..|
T Consensus 57 Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS--~~g 132 (250)
T TIGR00672 57 VKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINS--RTG 132 (250)
T ss_pred EcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecC--CCC
Confidence 4445677777776 5778999999999887752 1 2334443333333344444444433456777775 368
Q ss_pred CccCeEEEEE
Q 028565 145 QVIFHTHIHI 154 (207)
Q Consensus 145 q~v~HlHlHV 154 (207)
.+.+|+||||
T Consensus 133 RSQnQLHIHI 142 (250)
T TIGR00672 133 RSQNHFHIHI 142 (250)
T ss_pred cccccceeeH
Confidence 8899999998
No 34
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=95.75 E-value=0.048 Score=46.89 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=51.1
Q ss_pred EEECCeEEEEEcCCCCCceEEEEEecCCcCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCC
Q 028565 71 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDA---T---PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAG 144 (207)
Q Consensus 71 V~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~d---L---~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g 144 (207)
|.....++++.| +..+.|.|+||-..++-+.+ + ++.-|..-+..=..+.+.+.+-+....+.+.+|. ..|
T Consensus 58 Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS--~~g 133 (252)
T PRK05471 58 VDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINS--RYG 133 (252)
T ss_pred EccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecC--CCC
Confidence 334556666664 45677999999999887743 1 2234444344333444444444444457777765 468
Q ss_pred CccCeEEEEEe
Q 028565 145 QVIFHTHIHII 155 (207)
Q Consensus 145 q~v~HlHlHVI 155 (207)
.+..|+||||=
T Consensus 134 RSQnQLHIHIs 144 (252)
T PRK05471 134 RTQDQLHIHIS 144 (252)
T ss_pred ccccceeeehh
Confidence 88999999983
No 35
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=94.82 E-value=0.075 Score=44.99 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=39.8
Q ss_pred ECCeEEEEEcCCCCCceEEEEEecCCcCCCCCC------CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028565 73 EYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT------PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 146 (207)
Q Consensus 73 e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL------~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~ 146 (207)
....++++.| +..+.|+|+||-..++-+.+- ++.-|..-+..=..+.+++.+.+....+.+.+|.- .|.+
T Consensus 31 ~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~gRs 106 (222)
T PF02611_consen 31 LQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ--YGRS 106 (222)
T ss_dssp TTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G--GG-S
T ss_pred CCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc--cCcc
Confidence 3455666665 446789999999998877532 33444444433344555555555445678888763 5788
Q ss_pred cCeEEEEEe
Q 028565 147 IFHTHIHII 155 (207)
Q Consensus 147 v~HlHlHVI 155 (207)
..|+||||=
T Consensus 107 QdQLHIHis 115 (222)
T PF02611_consen 107 QDQLHIHIS 115 (222)
T ss_dssp --S--EEEE
T ss_pred ccceEeEhh
Confidence 899999984
No 36
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=93.03 E-value=0.69 Score=38.86 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=46.6
Q ss_pred EEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCC------CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCC
Q 028565 71 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT------PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAG 144 (207)
Q Consensus 71 V~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL------~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g 144 (207)
|-+...+.++.+.+ .|...|++|--+++.+.+- ++.-+..-++.=..+++.+.+-+....+.+.||. ..|
T Consensus 58 V~~~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs--~~g 133 (252)
T COG2134 58 VKPQAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINS--KNG 133 (252)
T ss_pred ecCCCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecC--ccC
Confidence 33445556666554 4557799999998876431 2223333333333344444443333356666664 467
Q ss_pred CccCeEEEEEe
Q 028565 145 QVIFHTHIHII 155 (207)
Q Consensus 145 q~v~HlHlHVI 155 (207)
.+..|+|+||-
T Consensus 134 RtQdqlHIHIS 144 (252)
T COG2134 134 RTQDQLHIHIS 144 (252)
T ss_pred ccccceEEEEE
Confidence 78899999984
No 37
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.41 Score=41.09 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=54.2
Q ss_pred eeeEEECCeE----EEEEcCC--C--CCceEEE-EEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--ceEEE
Q 028565 68 LLQLYEYDTC----LCILDTN--P--LSLGHSL-IVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD--SFNLL 136 (207)
Q Consensus 68 ~~iV~e~e~~----~a~l~~~--p--~~~GH~L-ViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~--~~ni~ 136 (207)
.+||||++.. +++.|.+ + ...-|++ |+-+.-+.++.||.+..+.-+.++-.++...+...|+.+ ...++
T Consensus 155 erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mf 234 (305)
T COG5075 155 ERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMF 234 (305)
T ss_pred ceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEE
Confidence 4679988654 4455432 1 1233444 455556999999999887666665555555555555543 35666
Q ss_pred EecCCCCCCccCeEEEEEecc
Q 028565 137 VNNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 137 ~n~g~~~gq~v~HlHlHVIPR 157 (207)
++. ..+-+|+|+||+-.
T Consensus 235 vHY----~PsYyhlHvHI~nI 251 (305)
T COG5075 235 VHY----QPSYYHLHVHIVNI 251 (305)
T ss_pred EEe----ccceEEEEEEEEee
Confidence 653 34668999999864
No 38
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=90.87 E-value=0.57 Score=38.20 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=42.6
Q ss_pred EEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEec
Q 028565 90 HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 90 H~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
.++|-.-+|-.+|.+|+.++...++.+.+.-...|.+.-.+.-+.++-|.|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 5666677898999999999887776665433333333222222445668899999999999999885
No 39
>PF13395 HNH_4: HNH endonuclease
Probab=89.63 E-value=0.25 Score=32.26 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=28.1
Q ss_pred EEecccccCCCCCCCCCCcc--chhhhhhhcccC
Q 028565 10 VLSSHLLPTGPAPCSSSSGV--SASFCAQQRLSH 41 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 41 (207)
.-++||+|++..+.++-.|+ .+..|++.++.-
T Consensus 18 ~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k 51 (54)
T PF13395_consen 18 YEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNK 51 (54)
T ss_pred ceeEEEecccccCCCCcchhheECHHHhhccccc
Confidence 57899999999999999999 888899887753
No 40
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=83.71 E-value=0.7 Score=39.67 Aligned_cols=17 Identities=53% Similarity=0.880 Sum_probs=15.1
Q ss_pred CCcceeEEEecccccCC
Q 028565 3 TPKRRLAVLSSHLLPTG 19 (207)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (207)
+|+|||+|||+||.|-+
T Consensus 156 ~p~RR~GVLvDHLV~GS 172 (275)
T PF11296_consen 156 GPGRRLGVLVDHLVPGS 172 (275)
T ss_pred CCCceeEeeeecccCCC
Confidence 69999999999999754
No 41
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=82.22 E-value=9.7 Score=35.83 Aligned_cols=135 Identities=15% Similarity=0.190 Sum_probs=84.3
Q ss_pred CCCCccccccccCCC-----CccccceeeE---EECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGES-----PAVKFCLLQL---YEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVP 118 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~-----~~~~~~~~iV---~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~ 118 (207)
.-..|..|..-.|-. |++. -+||| ..++.|..-...+..+..|++|+-.+|.+=- ++.+.+..|++.+.
T Consensus 170 ~YP~C~LC~ENeGY~Gr~~hPAR~-NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl~~~H~PMk--I~~~tF~rLL~fv~ 246 (493)
T PRK05270 170 SYPKCLLCMENEGYAGRLNHPARS-NHRIIRLTLGGESWGFQYSPYAYFNEHCIVLSEKHRPMK--ISRKTFERLLDFVE 246 (493)
T ss_pred CCCcccccccccCcCCCCCCcccc-CceEEEEeeCCceeeeecCchheecceeEEecCccCccE--ecHHHHHHHHHHHH
Confidence 346799998654432 2221 23444 4678898888888899999999999998743 56777766666553
Q ss_pred HHHHHHHHHcCCCceEEEEecCC-CCCCc-cCeEEE----EEecccCCCC-----------------CCccccccCCCCC
Q 028565 119 LISNAIMKATDADSFNLLVNNGA-AAGQV-IFHTHI----HIIPRKAHDC-----------------LWTSESLRRRPLK 175 (207)
Q Consensus 119 ~v~~~l~~~~~~~~~ni~~n~g~-~~gq~-v~HlHl----HVIPR~~~d~-----------------~w~~~~~~~~~~~ 175 (207)
+ | +.|-++.|-.. ..|-+ ..|=|+ |.+|-.+... .||-+..+-. .
T Consensus 247 ~--------f--PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~agivkWPmSviRL~--~ 314 (493)
T PRK05270 247 Q--------F--PHYFIGSNADLPIVGGSILSHDHYQGGRHTFPMAKAPIEEEFTLAGYPDVKAGIVKWPMSVIRLT--S 314 (493)
T ss_pred h--------C--CccccccCCCCCcccccccccccccCCCcccccccCccceEEecCCCCcceEEEeeCcceEEEee--c
Confidence 2 2 34445555432 23333 478887 5677543221 1443332211 1
Q ss_pred CC-HHHHHHHHHHHHHHhcccc
Q 028565 176 ID-QETSQLADQVREKLSNICE 196 (207)
Q Consensus 176 ~~-~e~~ela~~lR~~l~~~~~ 196 (207)
.+ +++.++|.+|.+.|...++
T Consensus 315 ~~~~~l~~~a~~Il~~Wr~YsD 336 (493)
T PRK05270 315 KNKDELIDAADKILEAWRGYSD 336 (493)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc
Confidence 13 4699999999999998766
No 42
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=81.88 E-value=9.5 Score=35.84 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCccccccccCCC-----CccccceeeE---EECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGES-----PAVKFCLLQL---YEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPL 119 (207)
Q Consensus 48 ~~~C~FC~ii~~e~-----~~~~~~~~iV---~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~ 119 (207)
-..|..|..-.|-. |++. -+||| ..++.|..-...+..+..|++|+-.+|.+=- ++...+..|++.+.+
T Consensus 168 YPkC~LC~ENeGY~Gr~nhPAR~-NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H~PMk--I~~~tF~~Ll~fv~~ 244 (489)
T TIGR01239 168 YPACQLCMENEGFEGSVNHPARS-NHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKHEPME--ISKKTFERLLSFLGK 244 (489)
T ss_pred CCccchhccccCcCCCCCCCccc-CceEEEEeeCCccceeeccchheecceeEEecCccCCcE--ecHHHHHHHHHHHHh
Confidence 34799998654432 3321 23444 4678888888888899999999999998743 567777666665532
Q ss_pred HHHHHHHHcCCCceEEEEecCC-CCCCcc-CeEEE----EEecccCCCC-----------------CCccccccCCCCCC
Q 028565 120 ISNAIMKATDADSFNLLVNNGA-AAGQVI-FHTHI----HIIPRKAHDC-----------------LWTSESLRRRPLKI 176 (207)
Q Consensus 120 v~~~l~~~~~~~~~ni~~n~g~-~~gq~v-~HlHl----HVIPR~~~d~-----------------~w~~~~~~~~~~~~ 176 (207)
| +.|-++.|-.. ..|-++ .|=|+ |.+|-.+... .||-+..+-. ..
T Consensus 245 --------f--PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~agivkWPmSviRL~--~~ 312 (489)
T TIGR01239 245 --------F--PHYFIGSNADLPIVGGSILSHDHYQGGRHDFPMARAEAEEVYELNDYPDVSAGIVKWPMSVLRLQ--GE 312 (489)
T ss_pred --------C--CccccccCCCCCcccccccccccccCCCcccccccCCcceEEecCCCCcceEEEEeccceEEEec--cC
Confidence 2 34445554432 234444 78776 5677433221 1443332211 11
Q ss_pred C-HHHHHHHHHHHHHHhcccc
Q 028565 177 D-QETSQLADQVREKLSNICE 196 (207)
Q Consensus 177 ~-~e~~ela~~lR~~l~~~~~ 196 (207)
+ +++.++|++|.+.|.+.++
T Consensus 313 ~~~~l~~~a~~Il~~Wr~YsD 333 (489)
T TIGR01239 313 DPGELAEAADHIFRTWQTYSD 333 (489)
T ss_pred CHHHHHHHHHHHHHHHhCCCc
Confidence 3 4699999999999998776
No 43
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=79.55 E-value=7.1 Score=32.08 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCc-eEEEEecCCCCCCccCeEEEEEecccCCC
Q 028565 103 DATPPSVVAAMCAKVPLISNAIMKATDADS-FNLLVNNGAAAGQVIFHTHIHIIPRKAHD 161 (207)
Q Consensus 103 ~dL~~ee~~el~~~~~~v~~~l~~~~~~~~-~ni~~n~g~~~gq~v~HlHlHVIPR~~~d 161 (207)
.++++++..+++ ......+.+.+|... ++..+|.. .+.||+|+-+||...+.
T Consensus 93 ~~~~~e~~~~~~---~~~~~~~~~r~g~~ni~~a~vH~D----E~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 93 NDLDPEQQKRWF---EDSLEWLQERYGNENIVSAVVHLD----ETTPHMHFDVVPIDEDG 145 (196)
T ss_pred cchhhHHHHHHH---HHHHHHHHHHCCchhEEEEEEECC----CCCcceEEEEeeccccc
Confidence 456666555444 455678888898643 66677653 45799999999987664
No 44
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]. This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.
Probab=75.36 E-value=1.9 Score=26.52 Aligned_cols=32 Identities=9% Similarity=0.253 Sum_probs=23.5
Q ss_pred eEEEecccccCCCCCCCCCCcc--chhhhhhhcc
Q 028565 8 LAVLSSHLLPTGPAPCSSSSGV--SASFCAQQRL 39 (207)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 39 (207)
..+.+.||+|...++-.+.+|+ ++..|.+..+
T Consensus 12 ~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~ 45 (47)
T PF01844_consen 12 ESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKH 45 (47)
T ss_dssp -GEEEEESS-TTTT---STTTEEEEEHHHHHHHH
T ss_pred cceEeECcCchhcCCCCCHHHHHHHhHHHHHHhc
Confidence 4688999999999999999999 8888987654
No 45
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=70.32 E-value=25 Score=31.26 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=41.3
Q ss_pred ceEEEEEecCC--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEE
Q 028565 88 LGHSLIVPKSH--FSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHI 154 (207)
Q Consensus 88 ~GH~LViPkrH--v~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHV 154 (207)
.|-+-||.-.. --++.+++..++..+...-+++...|.+.-...-+.|+-|.|...|.+.+|-|-.+
T Consensus 106 ~G~c~Vicf~Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 106 KGVCKVICFSPNHNLTLPLMDVVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred cceeEEEEeCCccccccccCCHHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcccce
Confidence 56666666544 44567788887776666555554444431111123456688988999998888654
No 46
>PRK11295 hypothetical protein; Provisional
Probab=67.02 E-value=3.1 Score=31.62 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=23.9
Q ss_pred eeEEEecccccCCCCCCCCCCcc--chhhhhhh
Q 028565 7 RLAVLSSHLLPTGPAPCSSSSGV--SASFCAQQ 37 (207)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 37 (207)
..|+.|+||.|-.....++.+|+ +|..|-..
T Consensus 39 ~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~ 71 (113)
T PRK11295 39 LRELTVHHIDHDHDNNPEDGSNWELLCLYCHDH 71 (113)
T ss_pred CCCceeeccCCCCCCCCCchhHHHHHhHHHHhH
Confidence 45889999999665655578998 88888655
No 47
>smart00507 HNHc HNH nucleases.
Probab=60.58 E-value=5.6 Score=24.15 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=20.9
Q ss_pred EEEecccccCCCCCCCCCCcc--chhhhh
Q 028565 9 AVLSSHLLPTGPAPCSSSSGV--SASFCA 35 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 35 (207)
++.+.||.|....+..+-+|+ ++..|.
T Consensus 23 ~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch 51 (52)
T smart00507 23 GLEVDHIIPLSDGGNDDLDNLVLLCPKCH 51 (52)
T ss_pred CeEEEecCChhcCCCCChHhCeecChhhC
Confidence 688999999988877777777 555553
No 48
>PF14317 YcxB: YcxB-like protein
Probab=59.48 E-value=20 Score=22.63 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=22.9
Q ss_pred EEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHH
Q 028565 71 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAK 116 (207)
Q Consensus 71 V~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~ 116 (207)
|.++++.+++.- .....++|||+- +++++..++...
T Consensus 25 v~e~~~~~~l~~----~~~~~~~iPk~~------f~~~e~~~f~~~ 60 (62)
T PF14317_consen 25 VVETKDYFYLYL----GKNQAFIIPKRA------FSEEEKEEFREF 60 (62)
T ss_pred EEEeCCEEEEEE----CCCeEEEEEHHH------CCHhHHHHHHHH
Confidence 677777777643 344889999984 235555555443
No 49
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=57.47 E-value=18 Score=29.82 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCc--eEEEEecCCCCCCccCeEEEEEe-cccCCC
Q 028565 120 ISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHII-PRKAHD 161 (207)
Q Consensus 120 v~~~l~~~~~~~~--~ni~~n~g~~~gq~v~HlHlHVI-PR~~~d 161 (207)
++..+.+.+++.. |-++.|. .-.|.|+||+ +|..-+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hivin~v~~~ 115 (242)
T PF03432_consen 77 IAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIVINRVDLD 115 (242)
T ss_pred HHHHHHHHcCCCCcceEEEECC------CcCeeeeeEEEeecccc
Confidence 3344444556644 4444433 2469999976 565544
No 50
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=52.60 E-value=1.1e+02 Score=28.58 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCccccccccCC-----CCccccceeeE---EECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHH
Q 028565 49 NDCVFCKIIRGE-----SPAVKFCLLQL---YEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLI 120 (207)
Q Consensus 49 ~~C~FC~ii~~e-----~~~~~~~~~iV---~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v 120 (207)
..|..|..-.|- -|++. -+||| ..++.|..-...+..+.-|++|+--+|++ -.++...+..|...+..
T Consensus 174 PkClLC~ENeGf~G~vNhPARq-NhRIIp~~l~~e~W~fQySPY~YynEH~I~l~~eH~p--M~Is~~tFerlL~f~dq- 249 (503)
T COG4468 174 PKCLLCKENEGFYGRVNHPARQ-NHRIIPVELNGEQWGFQYSPYVYYNEHCIILNGEHRP--MKISRKTFERLLSFLDQ- 249 (503)
T ss_pred cceeeeecccccccccCCcccc-cceeEEEEecCceeeEeeccceeecceeEEecCCccc--ceecHHHHHHHHHHHHh-
Confidence 459999854332 23331 22333 56888988888888899999999999986 23566666655554432
Q ss_pred HHHHHHHcCCCceEEEEecC-CCCCCc-cCeEEE----EEecccCCCC-----------------CCccccccCCCCCCC
Q 028565 121 SNAIMKATDADSFNLLVNNG-AAAGQV-IFHTHI----HIIPRKAHDC-----------------LWTSESLRRRPLKID 177 (207)
Q Consensus 121 ~~~l~~~~~~~~~ni~~n~g-~~~gq~-v~HlHl----HVIPR~~~d~-----------------~w~~~~~~~~~~~~~ 177 (207)
| ++|-++.|.. |..|-+ ..|=|+ |.+|..+... .||-++.+-. ..+
T Consensus 250 -------f--PhYfiGSNADLPIVGGSILsHDHyQgG~h~FpMakA~~eke~~~~~fp~V~aGiVKWPMSVlRL~--s~n 318 (503)
T COG4468 250 -------F--PHYFIGSNADLPIVGGSILSHDHYQGGRHEFPMAKAELEKEFSFKGFPDVSAGIVKWPMSVLRLQ--SKN 318 (503)
T ss_pred -------C--CcccccCCCCCCcccceeccccccccccccccccccchhheeeecCCCccccceeecchhheeec--cCC
Confidence 1 3444444432 223333 367776 5777543221 1443332211 113
Q ss_pred -HHHHHHHHHHHHHHhcccc
Q 028565 178 -QETSQLADQVREKLSNICE 196 (207)
Q Consensus 178 -~e~~ela~~lR~~l~~~~~ 196 (207)
.++-.+|+++-..|...++
T Consensus 319 k~~L~~lAd~il~~Wr~YSD 338 (503)
T COG4468 319 KVELIKLADKILKKWREYSD 338 (503)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 3688899998888887654
No 51
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.
Probab=52.40 E-value=5.7 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=23.7
Q ss_pred EEEecccccCCCCCCCCCCcc--chhhhhhh
Q 028565 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQ 37 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 37 (207)
.+.+.||.|...++..+-+|+ ++..|.+.
T Consensus 25 ~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~ 55 (57)
T cd00085 25 GLEVDHIIPLSDGGNNDLDNLVLLCRKCHRK 55 (57)
T ss_pred CceEEeecchhhCCCCchHHhHHHHHHHhhc
Confidence 578999999988888888888 77777654
No 52
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=48.94 E-value=6.2 Score=39.51 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=31.7
Q ss_pred EEEecccccCCCCCCCCCCcc--chhhhhhhcccCCCC
Q 028565 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRLSHSQE 44 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 44 (207)
.+-++||+|.+.++-++-+|+ .+..|++.++..++.
T Consensus 601 ~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~ 638 (805)
T TIGR01865 601 YYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPY 638 (805)
T ss_pred CCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHH
Confidence 367899999999999999998 899999999877764
No 53
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=43.12 E-value=79 Score=31.45 Aligned_cols=54 Identities=7% Similarity=0.057 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCc--eEEEEecCCCCCCccCeEEEEEecccCCCCCCcc
Q 028565 104 ATPPSVVAAMCAKVPLISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 166 (207)
Q Consensus 104 dL~~ee~~el~~~~~~v~~~l~~~~~~~~--~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~ 166 (207)
+|+.++..+|... -+++.+...| +.+.+|. .++..||+|+-+--|.-+..+|..
T Consensus 95 El~~~~~~~L~~~------f~~~~~~~~g~~~d~aiH~---~~~~NpHaHim~t~R~~~~~gf~~ 150 (744)
T TIGR02768 95 ELNLEQNIELARR------FVRDHFVEKGMVADWAIHD---DGDGNPHAHLLTTTRPLEENGFGA 150 (744)
T ss_pred hcCHHHHHHHHHH------HHHHHHHhCCCeEEEEEec---CCCCCCEEEEEeeceeeccccCCC
Confidence 7888887665443 2333333333 5678886 356679999988777654444653
No 54
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=39.50 E-value=1.4e+02 Score=25.41 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.4
Q ss_pred ccCeEEEEEe
Q 028565 146 VIFHTHIHII 155 (207)
Q Consensus 146 ~v~HlHlHVI 155 (207)
..+|-|+||+
T Consensus 78 g~~HPH~Hvl 87 (233)
T PF01446_consen 78 GSWHPHFHVL 87 (233)
T ss_pred CeeccceEEE
Confidence 3478888876
No 55
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=39.14 E-value=71 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.347 Sum_probs=23.4
Q ss_pred ccCeEEEEEe-cc--cCCCCCCccc---cccCCCCCCCH-HHHHHHHHHHHHHh
Q 028565 146 VIFHTHIHII-PR--KAHDCLWTSE---SLRRRPLKIDQ-ETSQLADQVREKLS 192 (207)
Q Consensus 146 ~v~HlHlHVI-PR--~~~d~~w~~~---~~~~~~~~~~~-e~~ela~~lR~~l~ 192 (207)
-..|.|+|++ |. ...+..|... .+.... .+.. -..++.+.|++++.
T Consensus 13 L~~hpHiH~lVt~Ggl~~~~~w~~~~~~~~fp~k-~l~~~fr~k~l~~L~~~~~ 65 (183)
T PF04986_consen 13 LNWHPHIHCLVTGGGLDKDGQWKKARKDYFFPVK-ALSKVFRGKFLQALRQRYD 65 (183)
T ss_pred cccCCeEEEEEecccccccccccccCcccchhhh-hhhHHHHHHHHHHHHHHHH
Confidence 3479999966 42 3444456541 111111 1122 26667777776643
No 56
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=38.75 E-value=52 Score=23.84 Aligned_cols=36 Identities=22% Similarity=0.089 Sum_probs=26.8
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 106 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~ 106 (207)
++.||.|+.+.+++.... +.+.+|||.+..-...++
T Consensus 30 ~GiVv~ET~nt~~I~t~~----~~~~~IpK~~~vF~f~l~ 65 (92)
T smart00538 30 EGIVVDETRNTLKIETKE----GRVKTVPKDGAVFEFELP 65 (92)
T ss_pred EEEEEEeeeeEEEEEeCC----CcEEEEECCCeEEEEEEC
Confidence 457899999999998654 568999999954333343
No 57
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=36.40 E-value=1.4e+02 Score=27.78 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=17.2
Q ss_pred HHHHHHcCCC----ce--EEEEecCCCCCCccCeEEEEEecc
Q 028565 122 NAIMKATDAD----SF--NLLVNNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 122 ~~l~~~~~~~----~~--ni~~n~g~~~gq~v~HlHlHVIPR 157 (207)
...++.|+.. .| -+++|. .-.|-|+||+-+
T Consensus 104 efA~E~FgsG~~G~~~dYV~AlH~------D~dHPHVHLvVn 139 (446)
T PRK13863 104 EWAAEMFGSGAGGGRYNYLTAFHI------DRDHPHLHVVVN 139 (446)
T ss_pred HHHHHHhCCCCCCCceeEEEEEec------CCCCCeEEEEEE
Confidence 4456677642 34 444443 236888888764
No 58
>PRK03879 ribonuclease P protein component 1; Validated
Probab=35.83 E-value=61 Score=23.74 Aligned_cols=34 Identities=21% Similarity=0.046 Sum_probs=25.2
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 105 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL 105 (207)
++.||.|+.+.+++. ..+....|||.+..--.++
T Consensus 32 ~GiVv~ETknt~~I~-----~~~~~~~VPK~~~iF~f~~ 65 (96)
T PRK03879 32 KGRVVDETRNTLVIE-----TDGKEWMVPKDGATFEFEL 65 (96)
T ss_pred eEEEEEeceeEEEEE-----cCCcEEEEeCCCeEEEEEE
Confidence 456799999999998 3346788999995433444
No 59
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=34.12 E-value=1.8e+02 Score=30.10 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCc--eEEEEecCCC-CCCccCeEEEEEecccCCCCCCccc
Q 028565 104 ATPPSVVAAMCAKVPLISNAIMKATDADS--FNLLVNNGAA-AGQVIFHTHIHIIPRKAHDCLWTSE 167 (207)
Q Consensus 104 dL~~ee~~el~~~~~~v~~~l~~~~~~~~--~ni~~n~g~~-~gq~v~HlHlHVIPR~~~d~~w~~~ 167 (207)
+|+.++..+|... .+.+.+...| +.+.+|.... .|+..||+|+-+-=|.-+..+|...
T Consensus 95 EL~~eq~~~L~~~------f~~~~~~~~G~~ad~aiH~~~~~dg~~NpHaHim~T~R~~~~~G~g~K 155 (988)
T PRK13889 95 EMTQAQGIELARD------FVQAEFVDRGMIADLNVHWDIGEDGMAKPHAHVMLTMRAVDENGFGAK 155 (988)
T ss_pred hcCHHHHHHHHHH------HHHHHHhcCCceEEEEeecccccCCCCCCeEEEEeccCccCCCCCCCc
Confidence 7888877665542 2233344433 3566765322 3455688888666565554556543
No 60
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=33.59 E-value=94 Score=24.99 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=34.2
Q ss_pred cCCcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEec
Q 028565 96 KSHFSCL-DATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 96 krHv~~l-~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
+||+.++ ..++++.+.++.+.++...+.+.+....++ ....|+++-++++|
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~~----------~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEEDK----------EPDRVYQLNIQLFP 170 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCCeEEEEEEEEec
Confidence 4566666 466778777777777777666666543311 23567899999988
No 61
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=32.60 E-value=60 Score=22.84 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=18.4
Q ss_pred ceEEEEEecCCcCCCCCCCHHHHHHH
Q 028565 88 LGHSLIVPKSHFSCLDATPPSVVAAM 113 (207)
Q Consensus 88 ~GH~LViPkrHv~~l~dL~~ee~~el 113 (207)
.-|.||+|.+.-. +|+++++..+
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~v 74 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDAV 74 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHHh
Confidence 4488999999876 8999987654
No 62
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=32.31 E-value=83 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=24.0
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFS 100 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~ 100 (207)
++.||.|+.+.+.+... .+.+..|||.+..
T Consensus 31 ~GiVV~ETknt~~I~t~----~~~~~~IpK~~~v 60 (89)
T PF01868_consen 31 EGIVVDETKNTFVIVTE----DGKVKTIPKAGSV 60 (89)
T ss_dssp EEEEEEEETTEEEEEET----TEEEEEEESTTEE
T ss_pred EEEEEEcccceEEEEec----CCcEEEEecCCEE
Confidence 46789999999999843 4478999999854
No 63
>PF09899 DUF2126: Putative amidoligase enzyme (DUF2126); InterPro: IPR018667 This domain is found in bacterial transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown.
Probab=31.52 E-value=2e+02 Score=28.98 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCCceEEEEecCC-CCCCccCeEEEEEecccCCCCCCccccccC---CCCCCC-HHHHHHHHHHHHH
Q 028565 116 KVPLISNAIMKATDADSFNLLVNNGA-AAGQVIFHTHIHIIPRKAHDCLWTSESLRR---RPLKID-QETSQLADQVREK 190 (207)
Q Consensus 116 ~~~~v~~~l~~~~~~~~~ni~~n~g~-~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~---~~~~~~-~e~~ela~~lR~~ 190 (207)
....+.+.|++.|.+.++ +-+-+|+ +.|...+.|-+.++=|..|.+.|..+.+-. .+...+ ++.+++++.|.+.
T Consensus 84 ~A~~L~~rLr~r~apggl-lh~gQGKWYPGE~LPRWal~lyWR~DG~PlW~~~~LlA~~~~~~~~~~~~A~~F~~~La~~ 162 (819)
T PF09899_consen 84 LADDLIRRLRARFAPGGL-LHYGQGKWYPGEPLPRWALGLYWRKDGEPLWRDPALLADEDKDYGATAEDAERFLAALAER 162 (819)
T ss_pred HHHHHHHHHHHhhcCCce-eeeccCCCCCCCCcchhhheeeeccCCccccCCHHHhcCCCCcCCCCHHHHHHHHHHHHHH
Confidence 344566888899988775 3344555 578999999999999999999997654322 122233 3477777777666
Q ss_pred Hh
Q 028565 191 LS 192 (207)
Q Consensus 191 l~ 192 (207)
|.
T Consensus 163 LG 164 (819)
T PF09899_consen 163 LG 164 (819)
T ss_pred hC
Confidence 63
No 64
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=24.00 E-value=96 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.071 Sum_probs=16.6
Q ss_pred HHHHHHcCCCc--eEEEEecCCCCCCccCeEEEEEec
Q 028565 122 NAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 122 ~~l~~~~~~~~--~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
..+.+.+|... |-++.|. ...|+|+||+-
T Consensus 91 ~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 91 ERICAGLGYGEHQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred HHHHHHhCCCCceEEEEEEC------CCCCceeEEEE
Confidence 33344445433 4445543 35799999984
No 65
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=23.32 E-value=96 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565 97 SHFSCLDATPPSVVAAMCAKVPLISNAIMKA 127 (207)
Q Consensus 97 rHv~~l~dL~~ee~~el~~~~~~v~~~l~~~ 127 (207)
||+-++.||+++++..+++....+.....+.
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhhhcC
Confidence 6888999999999999999888887766665
No 66
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=22.40 E-value=1.2e+02 Score=23.43 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCC--------CceEEEEEe
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPL--------SLGHSLIVP 95 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~--------~~GH~LViP 95 (207)
|++|.+|..........+ +||+-|..+..|. .|. +|||++..+
T Consensus 1 MGn~~~~~~~~~~~~~~v---kvv~~~G~v~~~~--~pv~a~evm~~~P~h~v~~~ 51 (181)
T PF14009_consen 1 MGNCVSCCLASSSSAATV---KVVHPDGKVEEFK--RPVTAAEVMLENPGHFVCDS 51 (181)
T ss_pred CCCcccccccccCCCceE---EEEcCCCcEEEeC--CCcCHHHHHHHCCCCEEecc
Confidence 678999975322233333 5677777777763 343 688987544
No 67
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=22.33 E-value=1.4e+02 Score=21.90 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=26.3
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 106 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~ 106 (207)
+++||.|+.+.+++.... -..++||++..--.+++
T Consensus 34 ~G~VVdETkNtLvi~t~~-----~~~~VpK~~~vfef~~~ 68 (95)
T COG1588 34 EGRVVDETKNTLVIDTGS-----REKVVPKDGAVFEFEGP 68 (95)
T ss_pred eEEEEeeeccEEEEECCC-----ceEEEecCcEEEEEEcC
Confidence 567899999999998765 45899999965433333
No 68
>COG1403 McrA Restriction endonuclease [Defense mechanisms]
Probab=21.31 E-value=35 Score=25.32 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=26.8
Q ss_pred EEEecccccCCCCCCCCCCcc--chhhhhhhccc
Q 028565 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRLS 40 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 40 (207)
+.-++||+|...++.+.-+|+ +++.|...++.
T Consensus 81 ~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~ 114 (146)
T COG1403 81 DLEVDHIVPLSRGGASAWENLETLCERCHNKKGS 114 (146)
T ss_pred CCceeeEeecccCCcchHHHHHHHHHhhcccccc
Confidence 677899999998877777898 99999877664
No 69
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=21.05 E-value=59 Score=28.95 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=19.0
Q ss_pred CCCcceeEEEecccccCCCC
Q 028565 2 GTPKRRLAVLSSHLLPTGPA 21 (207)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (207)
|-.+++.||+|+++..+.++
T Consensus 210 GDv~gkvailVDDm~dt~GT 229 (316)
T KOG1448|consen 210 GDVKGKVAILVDDMADTCGT 229 (316)
T ss_pred eccCCcEEEEecccccccch
Confidence 77899999999999999999
Done!