Query 028565
Match_columns 207
No_of_seqs 179 out of 1306
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 22:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ksv_A Uncharacterized protein 100.0 2.5E-37 8.4E-42 244.4 13.3 139 48-194 10-149 (149)
2 3imi_A HIT family protein; str 100.0 2.7E-37 9.1E-42 243.2 11.9 140 47-192 7-147 (147)
3 3o0m_A HIT family protein; ssg 100.0 5.6E-37 1.9E-41 241.9 13.3 142 47-196 3-145 (149)
4 3l7x_A SMU.412C, putative HIT- 100.0 1.1E-36 3.6E-41 246.3 13.5 140 46-192 33-172 (173)
5 3lb5_A HIT-like protein involv 100.0 2.3E-36 7.7E-41 241.7 13.4 136 46-191 25-161 (161)
6 1y23_A HIT, histidine triad pr 100.0 7.3E-36 2.5E-40 233.7 10.2 141 46-192 2-143 (145)
7 2eo4_A 150AA long hypothetical 100.0 2.3E-34 7.9E-39 226.5 13.5 137 51-194 1-139 (149)
8 3p0t_A Uncharacterized protein 100.0 4.9E-34 1.7E-38 222.0 12.1 132 48-194 4-137 (138)
9 3r6f_A HIT family protein; str 100.0 3.7E-34 1.3E-38 222.3 8.7 130 47-192 4-134 (135)
10 3ano_A AP-4-A phosphorylase; d 100.0 9E-33 3.1E-37 230.7 11.4 141 48-195 68-210 (218)
11 2oik_A Histidine triad (HIT) p 100.0 1.5E-31 5.3E-36 211.6 13.4 136 45-194 6-143 (154)
12 3n1s_A HIT-like protein HINT; 100.0 9E-32 3.1E-36 204.7 8.7 108 48-160 2-110 (119)
13 3o1c_A Histidine triad nucleot 100.0 1.9E-31 6.6E-36 204.7 8.8 118 42-166 8-125 (126)
14 3oj7_A Putative histidine tria 100.0 1.3E-30 4.6E-35 197.2 10.4 108 50-165 8-115 (117)
15 4egu_A Histidine triad (HIT) p 100.0 8.9E-31 3E-35 198.7 8.6 109 48-161 3-112 (119)
16 1fit_A FragIle histidine prote 100.0 4.4E-30 1.5E-34 201.6 12.6 124 69-192 14-147 (147)
17 1xqu_A HIT family hydrolase; p 100.0 2.3E-30 7.8E-35 204.1 9.6 111 48-166 34-146 (147)
18 3ohe_A Histidine triad (HIT) p 100.0 3E-28 1E-32 189.8 15.5 122 68-194 13-136 (137)
19 3i24_A HIT family hydrolase; s 100.0 7.2E-28 2.5E-32 190.2 14.6 122 68-194 13-136 (149)
20 1ems_A Nitfhit, NIT-fragIle hi 100.0 1.6E-28 5.6E-33 222.5 11.5 136 48-191 296-440 (440)
21 3nrd_A Histidine triad (HIT) p 99.9 5.7E-26 1.9E-30 176.5 14.8 118 68-191 15-135 (135)
22 1gup_A Galactose-1-phosphate u 99.9 1E-26 3.5E-31 206.1 7.7 142 47-192 192-340 (348)
23 3i4s_A Histidine triad protein 99.9 4.3E-25 1.5E-29 174.3 15.1 120 68-193 18-140 (149)
24 1z84_A Galactose-1-phosphate u 99.9 1.4E-25 4.8E-30 199.0 10.5 132 47-190 212-348 (351)
25 3sp4_A Aprataxin-like protein; 99.5 6.6E-15 2.3E-19 121.1 2.9 89 70-158 23-126 (204)
26 1z84_A Galactose-1-phosphate u 98.8 9.5E-09 3.2E-13 90.8 9.7 106 49-156 61-191 (351)
27 3bl9_A Scavenger mRNA-decappin 98.8 1.5E-08 5E-13 87.6 9.1 85 69-157 152-247 (301)
28 1vlr_A MRNA decapping enzyme; 98.8 2E-08 7E-13 88.0 8.4 85 69-157 199-294 (350)
29 1gup_A Galactose-1-phosphate u 97.2 0.0014 4.7E-08 57.5 9.1 64 90-155 107-170 (348)
30 2pof_A CDP-diacylglycerol pyro 95.8 0.0094 3.2E-07 49.3 4.6 81 71-155 34-120 (227)
31 2qgp_A HNH endonuclease; Q39X4 87.5 0.34 1.2E-05 35.4 2.8 34 9-42 49-84 (112)
32 3vg8_G Hypothetical protein TT 65.3 6.4 0.00022 28.6 3.7 25 131-156 77-101 (116)
33 2it9_A Hypothetical protein; s 41.6 1.1E+02 0.0036 22.7 7.8 108 69-191 2-122 (127)
34 2ns6_A Mobilization protein A; 37.2 52 0.0018 25.7 5.1 59 84-158 68-128 (185)
35 1ts9_A Ribonuclease P protein 34.3 35 0.0012 24.3 3.3 29 67-100 34-62 (102)
36 1v76_A RNAse P protein PH1771P 28.2 50 0.0017 23.1 3.3 34 67-106 36-69 (96)
37 2zae_A Ribonuclease P protein 24.5 53 0.0018 24.4 2.9 35 66-106 66-100 (127)
38 3hfn_A ASL2047 protein; HFQ, S 23.9 44 0.0015 22.3 2.2 33 66-102 36-68 (72)
39 2nvn_A Hypothetical protein; s 22.9 2.3E+02 0.0077 20.8 7.8 94 69-166 4-106 (122)
40 1oqk_A Conserved protein MTH11 22.6 66 0.0022 22.5 3.0 36 67-106 35-70 (97)
No 1
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=100.00 E-value=2.5e-37 Score=244.37 Aligned_cols=139 Identities=33% Similarity=0.556 Sum_probs=127.5
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 127 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~ 127 (207)
..+|+||+|+++++|..+ |||+++|+||+|.+|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.
T Consensus 10 ~~~~iFc~Ii~geip~~i-----V~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~ 84 (149)
T 3ksv_A 10 AANCIFCKIIKGDIPCAK-----VAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGP 84 (149)
T ss_dssp CTTCHHHHHHHTSSCCCE-----EEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCHHHHHHcCCCCccE-----EEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999876 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHHhcc
Q 028565 128 TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLSNI 194 (207)
Q Consensus 128 ~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~~~ 194 (207)
+++++||+++|+|+.+||+++|+|+|||||+.+|.+|+. .|. +..++ +++++++++||++|+++
T Consensus 85 ~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~g~~~-~w~--~~~~~~~~l~~~~~~lr~~l~~~ 149 (149)
T 3ksv_A 85 DGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKI-GWD--TVKVASDELAEDAKRYSEAIAKI 149 (149)
T ss_dssp TSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCCC-CCC--CCCCCHHHHHHHHHHHHHHHHTC
T ss_pred hCCCCEEEEEecCcccCCCCCEEEEEEEecccCCCCccc-CCC--CCCCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999988863 454 23344 57999999999999875
No 2
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=100.00 E-value=2.7e-37 Score=243.25 Aligned_cols=140 Identities=32% Similarity=0.589 Sum_probs=127.2
Q ss_pred CCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 126 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~ 126 (207)
.+++|+||+|+++++|..+ |||+++|+||+|.+|.+|||+||+||+|+.++.+|+++++.+|+..++++++++++
T Consensus 7 ~m~~CifC~i~~~e~~~~i-----V~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~ 81 (147)
T 3imi_A 7 TADNCIFCKIIDGQILCSK-----VYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKA 81 (147)
T ss_dssp CGGGCHHHHHHTTSSCCCE-----EEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHH
T ss_pred ccCCCcCcccccCCCcCCE-----EEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988766 99999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHHh
Q 028565 127 ATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS 192 (207)
Q Consensus 127 ~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~ 192 (207)
.+++++||+++|+|+.+||+++|+|+|||||+.+|.+|. ..|...+..++ +++++++++||++|+
T Consensus 82 ~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~l~ 147 (147)
T 3imi_A 82 EFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFG-AVWKSHQNEYTMENLQNIASTIANSVK 147 (147)
T ss_dssp HHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEE-EEECCCGGGCCHHHHHHHHHHHHHHCC
T ss_pred hcCCCCEEEEEeCCcccCCCcCEEEEEEeCCccCCCCce-eeccccCCCCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999988884 35654333445 579999999999873
No 3
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=100.00 E-value=5.6e-37 Score=241.88 Aligned_cols=142 Identities=35% Similarity=0.629 Sum_probs=125.5
Q ss_pred CCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 126 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~ 126 (207)
.++.|+||+|++++.|..+ |||+++|+||+|.+|.+|||+|||||+|+.++.+|+++++.+|+.+++++++++++
T Consensus 3 ~m~~CiFC~i~~~e~~~~i-----v~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~ 77 (149)
T 3o0m_A 3 GSMSCVFCAIVSGDAPAIR-----IYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARE 77 (149)
T ss_dssp CTTTCHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCccccCCCCCCE-----EEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988766 99999999999999999999999999999999999999999999999999999999
Q ss_pred H-cCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHhcccc
Q 028565 127 A-TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICE 196 (207)
Q Consensus 127 ~-~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~~e~~ela~~lR~~l~~~~~ 196 (207)
. +++++||+++|+|+.+||+++|+|+|||||+.+|.+|+...|.. ..++++++++++||++|.+...
T Consensus 78 ~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~~~~~~~~~~---~~~~~l~~~a~~lr~~l~~~~~ 145 (149)
T 3o0m_A 78 SGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMVM---RRDPDREESGRLLRAALAQLDS 145 (149)
T ss_dssp STTCCSEEEEECCCSGGGTCCSSSCCEEEEEECTTCCCCC---------CCCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEecCCCCCCccceEEEEEECCccCCCcccccCccc---CChHHHHHHHHHHHHHHHhhhc
Confidence 9 89999999999999999999999999999999998776543432 1135799999999999976554
No 4
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-36 Score=246.33 Aligned_cols=140 Identities=34% Similarity=0.634 Sum_probs=125.9
Q ss_pred CCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 46 ~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
..+++|+||+|+++++|..+ |||++.|+||+|.+|.+|||+|||||+|+.++.+|+++++.+|+..+++++++++
T Consensus 33 ~~m~~CiFC~Ii~~e~p~~i-----V~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~ 107 (173)
T 3l7x_A 33 GSMNDCLFCKIVAGDIPSSK-----VYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQ 107 (173)
T ss_dssp CCCTTCHHHHHHHTSSCCCE-----EEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCcccccccCCCCceE-----EEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999988766 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHh
Q 028565 126 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLS 192 (207)
Q Consensus 126 ~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~~e~~ela~~lR~~l~ 192 (207)
+.+++++||+++|+|+.+||+++|+|+|||||+.+|.+|. ..|...+.. .+++++++++||++|+
T Consensus 108 ~~~~~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~~d~gf~-~~~~~~~~~-~~~l~~~~~~ir~~L~ 172 (173)
T 3l7x_A 108 KATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFD-IRFVQHEPD-FTRLGQLAEDIQKEIE 172 (173)
T ss_dssp HHHTCSEEEEEECCSGGGTCCSCSCCEEEEEECC-CCSCC-CCCCCCCCC-HHHHHHHHHHHHHHHC
T ss_pred HhcCCCCEEEEEecCcccCCCcCEEEEEEEecccCCCCcc-cccCCCCCC-HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988884 346533221 2679999999999985
No 5
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=100.00 E-value=2.3e-36 Score=241.73 Aligned_cols=136 Identities=30% Similarity=0.462 Sum_probs=122.0
Q ss_pred CCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 46 ~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
..+++|+||+|+++++|..+ |||++.|+||+|.+|.+|||+|||||+|+.++.+|+++++.+|+.++++++++++
T Consensus 25 ~~~~~CiFC~i~~~e~p~~i-----V~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~ 99 (161)
T 3lb5_A 25 AYDNNNIFAKLIRNEIPSVR-----VYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVK 99 (161)
T ss_dssp CCCTTSHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccccCCCCccE-----EEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988766 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHH
Q 028565 126 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKL 191 (207)
Q Consensus 126 ~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l 191 (207)
+.+++++||+++|+|+.+||+++|+|+|||||+.+|..|+. ....++ +++++++++||++|
T Consensus 100 ~~~~~~g~ni~~n~g~~aGq~V~HlHiHiiPR~~~d~~~~~-----~~~~~~~~~l~~~~~~ir~~L 161 (161)
T 3lb5_A 100 KAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPH-----NNIITPTEILEENAKKIRAAL 161 (161)
T ss_dssp HHHTCSEEEEEEEESGGGTCCSCSCCEEEEEECTTCCC-----------CCCHHHHHHHHHHHHHHC
T ss_pred HhcCCCCEEEEEecCcccCCCCCEEEEEEEcccCCCCCCcC-----cccCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999998753 112234 57999999999875
No 6
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=100.00 E-value=7.3e-36 Score=233.69 Aligned_cols=141 Identities=30% Similarity=0.566 Sum_probs=124.5
Q ss_pred CCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028565 46 GHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 125 (207)
Q Consensus 46 ~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~ 125 (207)
...+.|+||+|++++.+..+ |||++.|+||+|.+|.++||+||+||+|+.++.+|+++++.+|+..+++++++++
T Consensus 2 ~~~~~C~fC~i~~~e~~~~i-----v~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~ 76 (145)
T 1y23_A 2 HCAENCIFCKIIAGDIPSAK-----VYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIR 76 (145)
T ss_dssp ---CCCHHHHHHHTSSCCCE-----EEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHH
T ss_pred CCCCCCcCCccccCCCCCCE-----EEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999887765 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHHh
Q 028565 126 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS 192 (207)
Q Consensus 126 ~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~ 192 (207)
+.+++++||+++|+|+.+||+++|+|+|||||+.+|.+|+. .|......++ +++++++++||++|.
T Consensus 77 ~~~~~~~~ni~~n~g~~~g~~v~HlH~HiiPr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lr~~l~ 143 (145)
T 1y23_A 77 DEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGA-VWKTHADDYKPEDLQNISSSIAKRLA 143 (145)
T ss_dssp HHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE-EECCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCEEEEEcCCcCCCCCcCEEEEEEEccccCCCCccc-ccCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887763 3532112344 569999999999984
No 7
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-34 Score=226.54 Aligned_cols=137 Identities=38% Similarity=0.591 Sum_probs=123.3
Q ss_pred ccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 028565 51 CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA 130 (207)
Q Consensus 51 C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~ 130 (207)
|+||+|++++.+..+ |||++.++||+|.+|.++||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 1 CiFC~i~~~e~~~~i-----v~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 75 (149)
T 2eo4_A 1 CTFCSIINRELEGYF-----VYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKA 75 (149)
T ss_dssp CHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCcccccCCCCccE-----EEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999988765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEecccCCCC-CCccccccCCCCCCC-HHHHHHHHHHHHHHhcc
Q 028565 131 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDC-LWTSESLRRRPLKID-QETSQLADQVREKLSNI 194 (207)
Q Consensus 131 ~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~-~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~~~ 194 (207)
++||+++|+|+.+||+++|+|+|||||+.+|. .|+. .|..... ++ +++++++++||++|.+.
T Consensus 76 ~~~ni~~n~g~~~gq~v~HlHiHviPr~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~lr~~l~~~ 139 (149)
T 2eo4_A 76 DGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFK-SFKPRKE-QEKEYYELLQKIIRESIENL 139 (149)
T ss_dssp SEEEEECCCSGGGTCCSCSCCEEEEEECSSCCCTTSC-CCCTTSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcCCCCCcCEEEEEEECCcCCCCccccc-ccCCCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987 5652 3432122 45 56999999999999543
No 8
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=100.00 E-value=4.9e-34 Score=222.01 Aligned_cols=132 Identities=22% Similarity=0.402 Sum_probs=117.0
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 127 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~ 127 (207)
.++|+||+|++++.|..+ |||+++++||+|.+|.++||+||+||+|+.++.+|+++++.+|+..++++++++++.
T Consensus 4 ~~~CiFC~i~~~e~p~~i-----V~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~ 78 (138)
T 3p0t_A 4 SMASIFTKIINRELPGRF-----VYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKA 78 (138)
T ss_dssp CHHHHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHhcCCCCcCE-----EEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999988766 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCCCccCeEEEEEecccCCCC-CCccccccCCCCCCC-HHHHHHHHHHHHHHhcc
Q 028565 128 TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDC-LWTSESLRRRPLKID-QETSQLADQVREKLSNI 194 (207)
Q Consensus 128 ~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~-~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~~~ 194 (207)
++++++|+.. +||+|+|+|+|||||+.+|. .|+ |. ...++ +++++++++||++|.+.
T Consensus 79 ~~~~~~n~~~-----~gq~v~HlH~HiiPr~~~d~~~~~---~~--~~~~~~~~l~~~~~~l~~~l~~~ 137 (138)
T 3p0t_A 79 FRTERSGLII-----AGLEVPHLHVHVFPTRSLSDFGFA---NV--DRNPSPESLDEAQAKIKAALAQL 137 (138)
T ss_dssp HTCSEEEEEE-----CCSSCSSCCEEEEEESCGGGSSST---TC--CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEE-----CCcccCEEEEEEeccccCCCCccc---CC--CCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999864 89999999999999999864 443 22 22334 57999999999999753
No 9
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.7e-34 Score=222.30 Aligned_cols=130 Identities=28% Similarity=0.546 Sum_probs=112.3
Q ss_pred CCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 126 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~ 126 (207)
.+++|+||+|++ .+..+ |||+++++||+|.+|.++||+||+||+|+.++.+|+++++.+|+.++++++++
T Consensus 4 ~~~~C~fC~i~~--~~~~i-----v~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~--- 73 (135)
T 3r6f_A 4 SMEGCIFCTLYR--KGANI-----IYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQK--- 73 (135)
T ss_dssp --CCCHHHHHHH--HCCSC-----CEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHH---
T ss_pred CCCCCcCccccc--CCceE-----EEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHH---
Confidence 467899999987 55655 99999999999999999999999999999999999999999999888776654
Q ss_pred HcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHHh
Q 028565 127 ATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS 192 (207)
Q Consensus 127 ~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~ 192 (207)
+++++||+++|+|+ ||+++|+|+|||||+.+|.+|+. .|.. ..++ +++++++++||++|+
T Consensus 74 -~~~~~~ni~~n~g~--gq~v~HlH~HiiPR~~~d~g~~~-~~~~--~~~~~~~l~~~~~~ir~~l~ 134 (135)
T 3r6f_A 74 -FGFERYNILQNNGN--HQEVFHVHFHVIPFVSADERLMI-NWKA--KSVSDKEYSEMVEEARLRVS 134 (135)
T ss_dssp -HTCCSEEEECCSSS--SCSSSSCCEEEEECCBTTBSCCC-CCCC--CCCCHHHHHHHHHHHHHHHH
T ss_pred -hCCCCeEEEEEcCC--CCCccEEEEEEeccccCCCCcee-cCCC--CCCCHHHHHHHHHHHHHHhc
Confidence 57889999999998 99999999999999999888873 4542 2344 579999999999985
No 10
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.98 E-value=9e-33 Score=230.68 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=122.7
Q ss_pred CCCccccccccCC-CCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGE-SPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 126 (207)
Q Consensus 48 ~~~C~FC~ii~~e-~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~ 126 (207)
++.|+||+|++++ .+.. +|||++.++||+|++|.++||+|||||+|+.++.+|+++++.+|+.+++++.+++++
T Consensus 68 ~~~CiFC~i~~~e~~~~~-----iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~ 142 (218)
T 3ano_A 68 SPAQPFTEIPQLSDEEGL-----VVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKN 142 (218)
T ss_dssp --CCHHHHGGGSCHHHHT-----EEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcccccCCCCCce-----EEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999873 3444 599999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCceEEEEecCCCCCCcc-CeEEEEEecccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHhccc
Q 028565 127 ATDADSFNLLVNNGAAAGQVI-FHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNIC 195 (207)
Q Consensus 127 ~~~~~~~ni~~n~g~~~gq~v-~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~~e~~ela~~lR~~l~~~~ 195 (207)
.+++++||+++|+|+.+||++ +|+|+|||||+.+|..|+. .|... ...++++++++++||++|.+..
T Consensus 143 ~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~gd~~f~~-v~g~~-~~~~~~l~~~~~~Lr~al~~~~ 210 (218)
T 3ano_A 143 VSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGGDANFIT-IIGGS-KVIPQLLRDTRRLLATEWARQP 210 (218)
T ss_dssp HCCCSEEEEEEEESGGGTCTTTTSCCEEEEEECTTGGGCCC-CC------CCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCCCEEEEEecCcccCCcccCEEEEEEEcccCCCCCccc-ccccc-cCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999 9999999999999988863 45432 2234679999999999997764
No 11
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.97 E-value=1.5e-31 Score=211.56 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=117.0
Q ss_pred CCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028565 45 SGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124 (207)
Q Consensus 45 ~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l 124 (207)
...++.|+||+++ +.. +|||+++|+||++.+|.+|||+||+||+|+.++.+|+++++.+|+..++++++++
T Consensus 6 ~~~~~~C~FC~~~----~~~-----iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l 76 (154)
T 2oik_A 6 MSFHKNCELCTTA----GGE-----ILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAV 76 (154)
T ss_dssp -CCCTTCHHHHSC----CSE-----EEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCCC----CCe-----EEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHH
Confidence 3456789999853 343 4999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCC-CCCC-HHHHHHHHHHHHHHhcc
Q 028565 125 MKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRP-LKID-QETSQLADQVREKLSNI 194 (207)
Q Consensus 125 ~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~-~~~~-~e~~ela~~lR~~l~~~ 194 (207)
++.+++++||+.. +||+++|+|+|||||+.+|..|+...|.... ...+ .++++++++||++|.+.
T Consensus 77 ~~~~~~~g~ni~~-----~gq~v~HlHiHiiPr~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~l~~~l~~~ 143 (154)
T 2oik_A 77 REVMRPDKINLAS-----LGNMTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVR 143 (154)
T ss_dssp HHHHCCSEEEEEE-----CCSSSCSCEEEEEEECTTSSSTTSCTTSCCCSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcEEhHH-----hCCCCCEEEEEEeCCCCCCCCCCccccCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999973 7899999999999999999999876675432 2223 46889999999888654
No 12
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.97 E-value=9e-32 Score=204.71 Aligned_cols=108 Identities=22% Similarity=0.436 Sum_probs=95.9
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH-
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK- 126 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~- 126 (207)
+++|+||+|++++.|..+ |||++.++||+|.+|.+|||+||+||+|+.++.||++++..+++.++..+.+.+++
T Consensus 2 ~~~CiFC~I~~ge~~~~i-----v~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~ 76 (119)
T 3n1s_A 2 AEETIFSKIIRREIPSDI-----VYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQE 76 (119)
T ss_dssp CCCCHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCCChhhhhhcCCCcCCE-----EEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999988766 99999999999999999999999999999999999999777777777655555554
Q ss_pred HcCCCceEEEEecCCCCCCccCeEEEEEecccCC
Q 028565 127 ATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAH 160 (207)
Q Consensus 127 ~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~ 160 (207)
.+++++||+++|+|+.+||+|+|+|+|||||.+-
T Consensus 77 ~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 77 GIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp TCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred CCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 4678899999999999999999999999999764
No 13
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.97 E-value=1.9e-31 Score=204.67 Aligned_cols=118 Identities=26% Similarity=0.460 Sum_probs=98.3
Q ss_pred CCCCCCCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHH
Q 028565 42 SQESGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLIS 121 (207)
Q Consensus 42 ~~~~~~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~ 121 (207)
+|+...+++|+||+|++++.|..+ |||+++++||+|.+|.++||+||+||+|+.++.+|++++...++.++..+.
T Consensus 8 ~~~~~~~~~CiFC~i~~~e~~~~i-----v~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~ 82 (126)
T 3o1c_A 8 AQVARPGGDTIFGKIIRKEIPAKI-----IFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGK 82 (126)
T ss_dssp ----CTTCSSHHHHHHHTSSCCCE-----EEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcchhhcCCCcCCE-----EEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHH
Confidence 344446788999999999988766 999999999999999999999999999999999999988777777775554
Q ss_pred HHHHHHcCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCcc
Q 028565 122 NAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 166 (207)
Q Consensus 122 ~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~ 166 (207)
+.+++...+++||+++|+|+.+||+|+|+|+|||||.+- .|++
T Consensus 83 ~~~~~~~~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~~--~~~~ 125 (126)
T 3o1c_A 83 KCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQM--NWPP 125 (126)
T ss_dssp HHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCC--CSSC
T ss_pred HHHHHhCCCCCeEEEEecCCccCCccCEeEEEEeCCccc--CCCC
Confidence 445444445799999999999999999999999999763 5764
No 14
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.97 E-value=1.3e-30 Score=197.23 Aligned_cols=108 Identities=30% Similarity=0.518 Sum_probs=94.3
Q ss_pred CccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028565 50 DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD 129 (207)
Q Consensus 50 ~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~ 129 (207)
+|+||+|++++.+..+ |||+++++||+|.+|.++||+||+||+|+.++.+|+++++.+++.++..+.+.+++.+.
T Consensus 8 ~CiFC~i~~~e~~~~i-----v~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~ 82 (117)
T 3oj7_A 8 SCIFCKIAQKQIPSTI-----VYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP 82 (117)
T ss_dssp -CHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT
T ss_pred CCcccccccCCCCCCE-----EEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3999999999887665 99999999999999999999999999999999999999887888877755555555454
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEecccCCCCCCc
Q 028565 130 ADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWT 165 (207)
Q Consensus 130 ~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~ 165 (207)
++||+++|+|+.+||+++|+|+|||||.+- .||
T Consensus 83 -~g~ni~~n~g~~agq~v~H~H~Hiipr~~~--~~~ 115 (117)
T 3oj7_A 83 -EGYRVVNNIGEDAGQTVKHIHFHILGGKKL--AWD 115 (117)
T ss_dssp -TCEEEECCCSTTTTCCSSSCCEEEEESSCC--CCC
T ss_pred -CCeEEEEcCCCCCCeeeeEEEEEEeCCCCC--CCC
Confidence 499999999999999999999999999763 465
No 15
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.97 E-value=8.9e-31 Score=198.65 Aligned_cols=109 Identities=34% Similarity=0.570 Sum_probs=94.0
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 127 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~ 127 (207)
.+.|+||+|++++.+..+ |||+++++||+|.+|.+|||+||+||+|+.++.+|+++++.+++.++..+.+.++..
T Consensus 3 ~~~C~FC~i~~~e~~~~i-----v~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~ 77 (119)
T 4egu_A 3 RMDCIFCKIANGEIPSTK-----VYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEK 77 (119)
T ss_dssp CTTCHHHHHHTTSSCCCE-----EEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHH
T ss_pred CCCccCeecccCCCCCCE-----EEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHh
Confidence 357999999999887765 999999999999999999999999999999999999998777777776443433332
Q ss_pred -cCCCceEEEEecCCCCCCccCeEEEEEecccCCC
Q 028565 128 -TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 161 (207)
Q Consensus 128 -~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d 161 (207)
+++++||+++|+|+.+||+++|+|+|||||....
T Consensus 78 ~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~~ 112 (119)
T 4egu_A 78 GFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLP 112 (119)
T ss_dssp THHHHCEEEEEEETTTTTCCSCSCCEEEEESSCCC
T ss_pred CCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCcccC
Confidence 3467999999999999999999999999997754
No 16
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.97 E-value=4.4e-30 Score=201.64 Aligned_cols=124 Identities=20% Similarity=0.352 Sum_probs=105.2
Q ss_pred eeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccC
Q 028565 69 LQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIF 148 (207)
Q Consensus 69 ~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~ 148 (207)
++|||++.++||+|.+|.++||+||+||+|+.++.+|+++++.+|+..++++++++++.+++++||+++|+|+.+||+++
T Consensus 14 ~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~ 93 (147)
T 1fit_A 14 VVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVK 93 (147)
T ss_dssp GEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSS
T ss_pred EEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCcc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCCCCccccccC---------CCCCCC-HHHHHHHHHHHHHHh
Q 028565 149 HTHIHIIPRKAHDCLWTSESLRR---------RPLKID-QETSQLADQVREKLS 192 (207)
Q Consensus 149 HlHlHVIPR~~~d~~w~~~~~~~---------~~~~~~-~e~~ela~~lR~~l~ 192 (207)
|+|+|||||+.+|..|+.+.|.. .....+ +++++++++||++|+
T Consensus 94 HlH~HiiPr~~~d~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~a~~lr~~l~ 147 (147)
T 1fit_A 94 HVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAAALRVYFQ 147 (147)
T ss_dssp SCCEEEEEECTTC--------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEEECCcCCCCCCcchHHHHhhhcccccccccCCCHHHHHHHHHHHHHHhC
Confidence 99999999999987776554421 122344 579999999998763
No 17
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.96 E-value=2.3e-30 Score=204.08 Aligned_cols=111 Identities=31% Similarity=0.503 Sum_probs=96.7
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 127 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~ 127 (207)
+++|+||+|++++.+..+ |||+++|+||+|++|.+|||+||+||+|+.++.+|++++..+++.+++ +++.+.+.
T Consensus 34 m~~CiFC~ii~~e~~~~i-----V~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~-~~~~v~~~ 107 (147)
T 1xqu_A 34 LENCVFCKIIKRELPSTI-----YYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHK-AANKVAED 107 (147)
T ss_dssp CTTCHHHHHHTTSSCBCE-----EEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHH-HHHHHHHH
T ss_pred cCCCcccccccCCCCcEE-----EEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHH-HHHHHHHH
Confidence 568999999999887765 999999999999999999999999999999999999988878888777 44455555
Q ss_pred cC--CCceEEEEecCCCCCCccCeEEEEEecccCCCCCCcc
Q 028565 128 TD--ADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 166 (207)
Q Consensus 128 ~~--~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~ 166 (207)
++ +++||+++|+|+.+||+++|+|+|||||++ ..||.
T Consensus 108 ~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~~~--~~wp~ 146 (147)
T 1xqu_A 108 LGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVD--MGPKI 146 (147)
T ss_dssp TTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSC--CCSCC
T ss_pred hCCCCCCEEEEEecCcccCCCccEEEEEEeCCCc--CCCCC
Confidence 55 469999999999999999999999999975 46763
No 18
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.96 E-value=3e-28 Score=189.79 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=110.8
Q ss_pred eeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCcc
Q 028565 68 LLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVI 147 (207)
Q Consensus 68 ~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v 147 (207)
..+|++++.++|+++..|.+|||+||+||+|+.++.||++++..+++..+.++++++++.++++++|++ .+||+|
T Consensus 13 ~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V 87 (137)
T 3ohe_A 13 THKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-----ALGNMV 87 (137)
T ss_dssp EEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-----ECCSSC
T ss_pred cEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-----eccCcC
Confidence 357999999999999999999999999999999999999999999999999999999999999999998 389999
Q ss_pred CeEEEEEecccCCCCCCccccccC-CCCCCC-HHHHHHHHHHHHHHhcc
Q 028565 148 FHTHIHIIPRKAHDCLWTSESLRR-RPLKID-QETSQLADQVREKLSNI 194 (207)
Q Consensus 148 ~HlHlHVIPR~~~d~~w~~~~~~~-~~~~~~-~e~~ela~~lR~~l~~~ 194 (207)
+|+|+|||||+.+|..|+.+.|.. .+..++ +++++++++||++|..+
T Consensus 88 ~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~~~~~ir~~L~~~ 136 (137)
T 3ohe_A 88 PQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLLEQL 136 (137)
T ss_dssp CSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998777854 233455 57999999999999754
No 19
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.95 E-value=7.2e-28 Score=190.23 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=110.9
Q ss_pred eeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCcc
Q 028565 68 LLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVI 147 (207)
Q Consensus 68 ~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v 147 (207)
..+|++++.++|+++..|.+|||+||+||+|+.++.||++++..+++..++++++++++.++++++|++. +||+|
T Consensus 13 ~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~-----aGq~V 87 (149)
T 3i24_A 13 CIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA-----LGNLV 87 (149)
T ss_dssp EEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-----CCSSC
T ss_pred CEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh-----hhCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999985 89999
Q ss_pred CeEEEEEecccCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHHhcc
Q 028565 148 FHTHIHIIPRKAHDCLWTSESLRRR-PLKID-QETSQLADQVREKLSNI 194 (207)
Q Consensus 148 ~HlHlHVIPR~~~d~~w~~~~~~~~-~~~~~-~e~~ela~~lR~~l~~~ 194 (207)
+|+|+|||||+.+|..|+.+.|... +..++ +++++++++||++|...
T Consensus 88 ~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a~kIr~~L~~~ 136 (149)
T 3i24_A 88 PQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNI 136 (149)
T ss_dssp CSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998777642 23445 57999999999999754
No 20
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.95 E-value=1.6e-28 Score=222.46 Aligned_cols=136 Identities=23% Similarity=0.311 Sum_probs=114.3
Q ss_pred CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565 48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 127 (207)
Q Consensus 48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~ 127 (207)
.+.|+||+ +++|.. +||||+++++||+|.+|.+|||+||+||+|+.++.+|+++++.+|+..++++++++++.
T Consensus 296 ~~~c~fc~---~e~p~~----~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~ 368 (440)
T 1ems_A 296 TGGLKFAR---FNIPAD----HIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKH 368 (440)
T ss_dssp SSCCEETT---EECCGG----GEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeeec---cccCCc----eEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 56799998 456643 35999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCC--------CCCCC-HHHHHHHHHHHHHH
Q 028565 128 TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRR--------PLKID-QETSQLADQVREKL 191 (207)
Q Consensus 128 ~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~--------~~~~~-~e~~ela~~lR~~l 191 (207)
+++++||+++|+|+.+||+++|+|+|||||+.+|..|+ ..|... ...++ +++++++++||++|
T Consensus 369 ~~~~~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (440)
T 1ems_A 369 HNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDN-EIYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM 440 (440)
T ss_dssp TTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSCC--------------------CCCHHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCCCCCccEEEEEEeCCCCCCCCcc-hhHHHhhhcccccccCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999997776 444211 12334 57999999999754
No 21
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.94 E-value=5.7e-26 Score=176.47 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=104.9
Q ss_pred eeeEEECCeEEEEEcCCCCCceEEEEEec-CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028565 68 LLQLYEYDTCLCILDTNPLSLGHSLIVPK-SHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 146 (207)
Q Consensus 68 ~~iV~e~e~~~a~l~~~p~~~GH~LViPk-rHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~ 146 (207)
..+|++++.++|+++..|.+|| +||||| +|+.++.||++++..+++..++++++++++.++++++|++. +||+
T Consensus 15 ~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~-----aGq~ 88 (135)
T 3nrd_A 15 GIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGA-----LGNI 88 (135)
T ss_dssp EEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE-----CCSS
T ss_pred CEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-----ccCC
Confidence 3579999999999999999996 577787 79999999999999999999999999999999999999973 8999
Q ss_pred cCeEEEEEecccCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHH
Q 028565 147 IFHTHIHIIPRKAHDCLWTSESLRRR-PLKID-QETSQLADQVREKL 191 (207)
Q Consensus 147 v~HlHlHVIPR~~~d~~w~~~~~~~~-~~~~~-~e~~ela~~lR~~l 191 (207)
|+|+|+|||||+.+|..|+.+.|... +..++ +++++++++||++|
T Consensus 89 V~HlH~HviPR~~~D~~~~~~~~~~~~~~~~~~~el~~~a~~i~~~L 135 (135)
T 3nrd_A 89 VRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 135 (135)
T ss_dssp CCSCCEEEEEECTTSTTTTSCSTTCSCCCCCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEecCCCCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999998777543 33455 56999999999875
No 22
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.93 E-value=1e-26 Score=206.10 Aligned_cols=142 Identities=12% Similarity=0.144 Sum_probs=119.2
Q ss_pred CCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 126 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~ 126 (207)
..+.|+||+|++++.+.. .++|||+++|+||++.+|..+||+||+||+|+.++.+|+++++.+|+.+++++.+++.+
T Consensus 192 ~~~~Cifc~ii~~E~~~~---~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~ 268 (348)
T 1gup_A 192 EQKSPMLVDYVQRELADG---SRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDN 268 (348)
T ss_dssp HHSSCHHHHHHHHHHHHC---TTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhHHHhhccccC---ceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999886552 14599999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-ceEEEEecCCCCC--CccCeEEEEEec---ccCCCCCCcccc-ccCCCCCCCHHHHHHHHHHHHHHh
Q 028565 127 ATDAD-SFNLLVNNGAAAG--QVIFHTHIHIIP---RKAHDCLWTSES-LRRRPLKIDQETSQLADQVREKLS 192 (207)
Q Consensus 127 ~~~~~-~~ni~~n~g~~~g--q~v~HlHlHVIP---R~~~d~~w~~~~-~~~~~~~~~~e~~ela~~lR~~l~ 192 (207)
.++++ +||+++|.++..| |+++|+|+|||| |+.++..|.... +. .....+..++++|++||+++.
T Consensus 269 ~~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl~R~~~~~~~~~g~e~~-~~~~~~~~pE~~A~~Lr~~~~ 340 (348)
T 1gup_A 269 LFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEML-AETQRDLTAEQAAERLRAVSD 340 (348)
T ss_dssp HHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHH-TCCEESSCHHHHHHHHHTSCS
T ss_pred HhCCCCCeEEEEEeCCCCCCCCcccEEEEEEecchhccCCcccceeeEecc-cCCCCCCCHHHHHHHHHhhhh
Confidence 99997 9999999998754 889999999999 998876554322 11 111112358999999998764
No 23
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.93 E-value=4.3e-25 Score=174.33 Aligned_cols=120 Identities=19% Similarity=0.317 Sum_probs=106.2
Q ss_pred eeeEEECCeEEEEEcCCCCCceEEEEEecC-CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028565 68 LLQLYEYDTCLCILDTNPLSLGHSLIVPKS-HFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 146 (207)
Q Consensus 68 ~~iV~e~e~~~a~l~~~p~~~GH~LViPkr-Hv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~ 146 (207)
..++++.+.++|+++..| +.+|+|||||+ |+.++.||+++++.+++..++++++++++.++++++|++. +||+
T Consensus 18 ~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~~-----aGq~ 91 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAA-----LGNL 91 (149)
T ss_dssp EEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE-----CCSS
T ss_pred CEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-----cCCc
Confidence 357999999999999766 45599999999 8999999999999999999999999999999999999973 8999
Q ss_pred cCeEEEEEecccCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHHhc
Q 028565 147 IFHTHIHIIPRKAHDCLWTSESLRRR-PLKID-QETSQLADQVREKLSN 193 (207)
Q Consensus 147 v~HlHlHVIPR~~~d~~w~~~~~~~~-~~~~~-~e~~ela~~lR~~l~~ 193 (207)
|+|+|+|||||+.+|..|+.+.|... +..++ +++++++++||++|..
T Consensus 92 V~HlH~HvIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a~~Ir~~L~~ 140 (149)
T 3i4s_A 92 VPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKIWL 140 (149)
T ss_dssp CCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEEECCcCCCCCCCccccCCCcCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988888643 33455 5699999999998853
No 24
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.92 E-value=1.4e-25 Score=199.04 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=113.7
Q ss_pred CCCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028565 47 HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 126 (207)
Q Consensus 47 ~~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~ 126 (207)
..+.|+||+|++++. + |||+++|+||+|++|.+|||+||+||+|+.++.+|+++++.+|+.+++++.+++.+
T Consensus 212 ~~~~ciFc~ii~~E~---i-----V~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~ 283 (351)
T 1z84_A 212 ETGKCCLCEAKSKHF---V-----IDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAK 283 (351)
T ss_dssp HHSSCTTTTHHHHSE---E-----EEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHhcCe---E-----EecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 346899999998765 4 99999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCceEEEEecCCCCC----CccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHH
Q 028565 127 ATDADSFNLLVNNGAAAG----QVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREK 190 (207)
Q Consensus 127 ~~~~~~~ni~~n~g~~~g----q~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~ 190 (207)
.+++++||+++|+|+.+| |.++|+|+||+||++...+|... . ....+ .+++++|++||++
T Consensus 284 ~~~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~~~Gfe~~--~--~~~i~~~~pE~~A~~LR~~ 348 (351)
T 1z84_A 284 QLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIG--T--GCYINPVFPEDVAKVMREV 348 (351)
T ss_dssp HTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEECCCCCCHHHHH--H--SCCEESSCHHHHHHHHHHC
T ss_pred hcCCCCEEEEEeCCCccCCCCCCccceEEEEEEccCCCcCccccc--c--CcccCCccHHHHHHHHHhc
Confidence 999999999999999887 78999999999999765543211 1 11112 3589999999964
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.49 E-value=6.6e-15 Score=121.11 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred eEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHH--HHHHHHHHHHHHHH-H-HHHHc--------CC---CceE
Q 028565 70 QLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS--VVAAMCAKVPLISN-A-IMKAT--------DA---DSFN 134 (207)
Q Consensus 70 iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~e--e~~el~~~~~~v~~-~-l~~~~--------~~---~~~n 134 (207)
+|||+|.++||.|.+|.++||+|||||+|+.++.++.+. +...|...|..++. . |.+.+ +. .+|.
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 102 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence 499999999999999999999999999999998765442 12334444444333 2 33322 11 1222
Q ss_pred EEEecCCCCCCccCeEEEEEeccc
Q 028565 135 LLVNNGAAAGQVIFHTHIHIIPRK 158 (207)
Q Consensus 135 i~~n~g~~~gq~v~HlHlHVIPR~ 158 (207)
..++.|..++++++|+|+|||.+.
T Consensus 103 ~~i~~GfHa~PSm~HLHLHVIS~D 126 (204)
T 3sp4_A 103 NYIKVGFHAGPSMNNLHLHIMTLD 126 (204)
T ss_dssp TTEEEEEESSCSSSSCCEEEEESC
T ss_pred eeEeccCCCCCcccceeEEEeccC
Confidence 233444457889999999999753
No 26
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.85 E-value=9.5e-09 Score=90.84 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=81.0
Q ss_pred CCccccccccCCCCccccceeeEE--ECCeEEEEEcCCCCCc------------e-----------EEEEEecCCcCCCC
Q 028565 49 NDCVFCKIIRGESPAVKFCLLQLY--EYDTCLCILDTNPLSL------------G-----------HSLIVPKSHFSCLD 103 (207)
Q Consensus 49 ~~C~FC~ii~~e~~~~~~~~~iV~--e~e~~~a~l~~~p~~~------------G-----------H~LViPkrHv~~l~ 103 (207)
..|+||.-.....+..+ ..++. .+-.++||.+++|... | +++|.+.+|..++.
T Consensus 61 ~~CpfCpg~~~~t~~e~--~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~ 138 (351)
T 1z84_A 61 SSCPFCIGREQECAPEL--FRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLS 138 (351)
T ss_dssp CCCTTSTTCGGGSSCEE--EEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGG
T ss_pred CCCcCCCCCcccCCccc--ccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcH
Confidence 36999974333323321 01111 2456899999999983 5 88999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEec
Q 028565 104 ATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 104 dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
+|+.+++.+++.....-.+.|.+..+...++++.|.|+.+|.+++|.|.||+.
T Consensus 139 ~ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 139 DIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 99999999988888776666666556667899999999999999999999974
No 27
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=98.80 E-value=1.5e-08 Score=87.59 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=67.7
Q ss_pred eeEEECCe----EEEEEcCC----CCCceEEEEEecCC-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CceEEEE
Q 028565 69 LQLYEYDT----CLCILDTN----PLSLGHSLIVPKSH-FSCLDATPPSVVAAMCAKVPLISNAIMKATDA--DSFNLLV 137 (207)
Q Consensus 69 ~iV~e~e~----~~a~l~~~----p~~~GH~LViPkrH-v~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~--~~~ni~~ 137 (207)
+|+|+++. |+++.|.+ |...-|+|+||++| +.++.+|..+.+.-|-.+...+.+++.+.+|. ..+.+++
T Consensus 152 ~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~rlgf 231 (301)
T 3bl9_A 152 RIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYL 231 (301)
T ss_dssp GCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEe
Confidence 56999988 99999876 78899999999988 99999999998644444444455667776664 4689999
Q ss_pred ecCCCCCCccCeEEEEEecc
Q 028565 138 NNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 138 n~g~~~gq~v~HlHlHVIPR 157 (207)
|.-| +++|+|+||+..
T Consensus 232 Hy~P----S~yHLHlHvis~ 247 (301)
T 3bl9_A 232 HYLP----SYYHLHVHFTAL 247 (301)
T ss_dssp ESSC----SSSSCEEEEEET
T ss_pred cCCC----CcceEEEEEEec
Confidence 8654 789999999964
No 28
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.75 E-value=2e-08 Score=87.97 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=67.8
Q ss_pred eeEEECCe----EEEEEcCC----CCCceEEEEEecCC-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CceEEEE
Q 028565 69 LQLYEYDT----CLCILDTN----PLSLGHSLIVPKSH-FSCLDATPPSVVAAMCAKVPLISNAIMKATDA--DSFNLLV 137 (207)
Q Consensus 69 ~iV~e~e~----~~a~l~~~----p~~~GH~LViPkrH-v~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~--~~~ni~~ 137 (207)
+|||+++. |+++.|.+ |...-|+|+||++| +.++.+|..+.+.-|-.+...+.+++.+.+|. ..+.+++
T Consensus 199 ~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgf 278 (350)
T 1vlr_A 199 RIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYL 278 (350)
T ss_dssp CCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEe
Confidence 56999988 99999876 78999999999988 99999999998644444444555677776664 4689999
Q ss_pred ecCCCCCCccCeEEEEEecc
Q 028565 138 NNGAAAGQVIFHTHIHIIPR 157 (207)
Q Consensus 138 n~g~~~gq~v~HlHlHVIPR 157 (207)
+.-| +++|+|+|||..
T Consensus 279 Hy~P----S~yHLHlHvis~ 294 (350)
T 1vlr_A 279 HYLP----SYYHLHVHFTAL 294 (350)
T ss_dssp ESSC----SSSSCEEEEEET
T ss_pred cCCC----CcceEEEEEEec
Confidence 8654 789999999964
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=97.20 E-value=0.0014 Score=57.51 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=49.3
Q ss_pred EEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccCeEEEEEe
Q 028565 90 HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 155 (207)
Q Consensus 90 H~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHlHVI 155 (207)
.++|-..+|-.++.+|+.+++..++.....-...|... ..-+.++-|.|+.+|.+.+|-|.+|+
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~~--~~yV~iF~N~G~~~G~Sl~HpH~Qi~ 170 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPGGQIW 170 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHH--CSEEEEEEEESGGGTCSCCSSEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHhhc--CCEEEEecccCCcCCcCCCCCceeEE
Confidence 45555669999999999999888877776655555522 22345677999999999999999997
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=95.77 E-value=0.0094 Score=49.31 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=54.4
Q ss_pred EEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCC------CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCC
Q 028565 71 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT------PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAG 144 (207)
Q Consensus 71 V~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL------~~ee~~el~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g 144 (207)
|.....++++.| +..+.|.|+||-..|+-+.+- ++.-|..-+..=..|.+++.+-+....+.+.+|.- .|
T Consensus 34 Vd~~~gyvvlKD--~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~g 109 (227)
T 2pof_A 34 VKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSR--TG 109 (227)
T ss_dssp EETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCG--GG
T ss_pred EccCCCEEEEeC--CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCC--CC
Confidence 334455666666 447779999999998877531 23345544554455666666666555688888763 67
Q ss_pred CccCeEEEEEe
Q 028565 145 QVIFHTHIHII 155 (207)
Q Consensus 145 q~v~HlHlHVI 155 (207)
.+..|+||||=
T Consensus 110 RSQnQLHIHIs 120 (227)
T 2pof_A 110 RTQNHFHIHIS 120 (227)
T ss_dssp CSCCSCCEEEE
T ss_pred ccccceeeehh
Confidence 88899999984
No 31
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=87.53 E-value=0.34 Score=35.36 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCCCCCcc--chhhhhhhcccCC
Q 028565 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRLSHS 42 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 42 (207)
+..++||+|.+.++.++.+|+ ++..|+..++..+
T Consensus 49 ~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~ 84 (112)
T 2qgp_A 49 ELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLL 84 (112)
T ss_dssp GEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCC
T ss_pred CcEEEEEeehhcCCCCChhhChhhCHHHHHHHccCC
Confidence 478999999999999999998 9999999988643
No 32
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=65.32 E-value=6.4 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=20.3
Q ss_pred CceEEEEecCCCCCCccCeEEEEEec
Q 028565 131 DSFNLLVNNGAAAGQVIFHTHIHIIP 156 (207)
Q Consensus 131 ~~~ni~~n~g~~~gq~v~HlHlHVIP 156 (207)
+.+++.+| +.+.|-.++|.|+|+.=
T Consensus 77 DHVdi~~~-~gHpGve~PHyhI~l~~ 101 (116)
T 3vg8_G 77 DHVNMIPS-GPHPGVSEPHYHIELVL 101 (116)
T ss_dssp CEEEEEEC-CCCTTCCSCEEEEEEES
T ss_pred ceEEEecC-CCCCCcccCceEEEEEE
Confidence 67899886 55678889999999863
No 33
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=41.59 E-value=1.1e+02 Score=22.75 Aligned_cols=108 Identities=11% Similarity=0.073 Sum_probs=63.0
Q ss_pred eeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCceEEEEecCCCCC
Q 028565 69 LQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT----DADSFNLLVNNGAAAG 144 (207)
Q Consensus 69 ~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~----~~~~~ni~~n~g~~~g 144 (207)
+|+-+++.|.+..|.... .+-.||=-. .. -.+|+..|+.+|.+++.++...+...- +.+.+.+-...++.-.
T Consensus 2 mi~~eG~GWRLgwdp~~~-~f~~LIGge-~W--AiELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~ 77 (127)
T 2it9_A 2 MIKKEGPGWRIIFDSSRD-NFSTLIGGE-TW--AIELDKSEWKILVEVVMELCDQYKLVKEQLMGDEDITLELERRPWLA 77 (127)
T ss_dssp EEEEEETTEEEEEETTCS-SCCEEEECS-SE--EEEECHHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEEEEETTEEE
T ss_pred ceeeecCCeEEEECCCcc-cCCEEEccC-ce--eeeecHHHHHHHHHHHHHHHHHHHHHHHHhcchhheeeeecCccEEE
Confidence 678899999888776532 222343322 21 257899999999999999998887774 2345655544433211
Q ss_pred --Cc-cCeEEEEEec--cc-CC---CCCCccccccCCCCCCCHHHHHHHHHHHHHH
Q 028565 145 --QV-IFHTHIHIIP--RK-AH---DCLWTSESLRRRPLKIDQETSQLADQVREKL 191 (207)
Q Consensus 145 --q~-v~HlHlHVIP--R~-~~---d~~w~~~~~~~~~~~~~~e~~ela~~lR~~l 191 (207)
.. -..+.+++|= .. .+ ...||+ +...+++..+|..+
T Consensus 78 eleG~~~~~sLr~IL~~~~~~gR~~Eg~Wpa-----------~av~~l~~a~~~lw 122 (127)
T 2it9_A 78 ILNGDQYGWNLRLILSASGLFNRGAEVYWPR-----------HVTNNVVNAMRSMW 122 (127)
T ss_dssp EEEEETTEEEEEEEECC---CCCCEEEEECT-----------THHHHHHHHHHHTT
T ss_pred EeecccCeeEEEEEEecCCCCCceeeeeCCH-----------HHHHHHHHHHHHhc
Confidence 11 1346666653 21 11 123543 35667777777654
No 34
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=37.16 E-value=52 Score=25.74 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCc--eEEEEecCCCCCCccCeEEEEEeccc
Q 028565 84 NPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIPRK 158 (207)
Q Consensus 84 ~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~~~~~--~ni~~n~g~~~gq~v~HlHlHVIPR~ 158 (207)
.+.+.--.+-+| .+|+.++..+|.+ .-+++.+...| +.+.+|.. +...||+|+=+--|.
T Consensus 68 a~lare~~iALP-------~EL~~eq~~~L~~------~f~~~~~~~~G~~~d~AIH~~---~~~NpHaHim~t~R~ 128 (185)
T 2ns6_A 68 GRLFKEVEFALP-------VELTLDQQKALAS------EFAQHLTGAERLPYTLAIHAG---GGENPHCHLMISERI 128 (185)
T ss_dssp SCCEEEEEEECC-------TTSCHHHHHHHHH------HHHHHHHTTTTCCEEEEEEEE---TTTEEEEEEEECCBC
T ss_pred CeEEEEEEEECC-------ccCCHHHHHHHHH------HHHHHHHHhcCCEEEEEEEcC---CCCCceEEEEEeecc
Confidence 344555555555 4588888766544 23344455444 56888862 344566666443444
No 35
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=34.32 E-value=35 Score=24.27 Aligned_cols=29 Identities=17% Similarity=-0.051 Sum_probs=23.8
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFS 100 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~ 100 (207)
++.||.|+.+.+.+.. .+.+.+|||.+..
T Consensus 34 ~GiVV~ETkntf~I~t-----~~~~k~VPK~~~v 62 (102)
T 1ts9_A 34 KGEVVDETQNTLKIMT-----EKGLKVVAKRGRT 62 (102)
T ss_dssp EEEEEEECSSEEEEEE-----SSSEEEEECTTCE
T ss_pred EEEEEEeccceEEEEe-----CCcEEEEECCCEE
Confidence 4567999999999986 4578999999853
No 36
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=28.21 E-value=50 Score=23.12 Aligned_cols=34 Identities=18% Similarity=-0.046 Sum_probs=26.2
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 106 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~ 106 (207)
++.||.|+.+.+.+.. ..+.+|||.+..-..+++
T Consensus 36 ~GiVV~ET~ntf~I~t------~~~~~VPK~~~vF~f~~~ 69 (96)
T 1v76_A 36 EGYVIDETRNMLVIAG------DRIWKVPKDVSIFEFEAD 69 (96)
T ss_dssp EEEEEEECSSEEEEES------SSEEEEESTTEEEEEECT
T ss_pred EEEEEEeccceEEEEc------CCEEEEECCCEEEEEEEC
Confidence 4568999999999997 388999999965433444
No 37
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=24.53 E-value=53 Score=24.35 Aligned_cols=35 Identities=17% Similarity=-0.035 Sum_probs=27.2
Q ss_pred cceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCC
Q 028565 66 FCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 106 (207)
Q Consensus 66 ~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~ 106 (207)
-++.||.|+.+.+.+.. ..+.+|||.+..-..+++
T Consensus 66 i~GiVV~ETknTf~I~t------~~~k~VPK~~~vF~f~l~ 100 (127)
T 2zae_A 66 IEGYVIDETRNMLVIAG------DRIWKVPKDVSIFEFEAD 100 (127)
T ss_dssp CEEEEEEEETTEEEEES------SSEEEEESTTEEEEEECT
T ss_pred cEEEEEEcccceEEEEc------CCEEEEECCCeEEEEEeC
Confidence 35678999999999987 388999999965444444
No 38
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=23.95 E-value=44 Score=22.32 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=23.0
Q ss_pred cceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCC
Q 028565 66 FCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 102 (207)
Q Consensus 66 ~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l 102 (207)
..++|.+.|.+|+++.+.+ ++-.+|.|.++..+
T Consensus 36 l~G~i~WQD~~cl~L~~~~----~~~~LI~R~AI~~I 68 (72)
T 3hfn_A 36 ITGRVLWQDPTCVCIADEN----SRQTTIWKQAIAYL 68 (72)
T ss_dssp EEEEEEEECSSEEEEEC-------CEEEEEGGGEEEE
T ss_pred EEEEEEEECCCEEEEEcCC----CCeEEEEeeeeEEE
Confidence 4567899999999999765 35577777776543
No 39
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=22.93 E-value=2.3e+02 Score=20.77 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=56.3
Q ss_pred eeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCceEEEEecCCCCC
Q 028565 69 LQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT----DADSFNLLVNNGAAAG 144 (207)
Q Consensus 69 ~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~----~~~~~ni~~n~g~~~g 144 (207)
+|+-+++.|.+-.|.... .+-.||=--.- -.+|+..|+.+|.+++.++...+...- +.+.+.+-...++.-.
T Consensus 4 ~i~~eG~GWRLgwdp~~~-~f~~LIGge~W---AiELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~ 79 (122)
T 2nvn_A 4 RILREGAGWRLGWDETAH-RYPGLVGTTDW---AVELTAAEMADFCRLVQQLAETIAAIAPELMPEERLQIEAESALLWL 79 (122)
T ss_dssp EEEEEETTEEEEEETTCS-SCCEEEECSSC---EEEECHHHHHHHHHHHHHHHHHHHTSCCCSSCSSCEEEEEECSSEEE
T ss_pred hhhhcCCCeEEEECCCcc-cCCEEEccCch---heeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhheeeeecCccEEE
Confidence 568899999888876532 22334432222 357999999999999999998888774 2345666554443211
Q ss_pred --Cc-cCeEEEEEec--ccCCCCCCcc
Q 028565 145 --QV-IFHTHIHIIP--RKAHDCLWTS 166 (207)
Q Consensus 145 --q~-v~HlHlHVIP--R~~~d~~w~~ 166 (207)
.. -..+.+++|= .+.-...||+
T Consensus 80 eleG~~~~~sLr~IL~~gR~~Eg~Wpa 106 (122)
T 2nvn_A 80 EAEGFADAYELRLILASDRRVEACWPA 106 (122)
T ss_dssp EEEEETTEEEEEEEECSSSCCEEEECT
T ss_pred EeecccCeeEEEEEEcCCcceeeECCH
Confidence 11 1346666653 2222334665
No 40
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1
Probab=22.58 E-value=66 Score=22.53 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=26.2
Q ss_pred ceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCC
Q 028565 67 CLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 106 (207)
Q Consensus 67 ~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~ 106 (207)
++.||.|+.+.+.+.... +.+.+|||.+..--.+++
T Consensus 35 ~GiVV~ET~ntf~I~t~~----~~~k~VPK~~~vF~f~~~ 70 (97)
T 1oqk_A 35 SGRVVDETRNTLRIEMDD----GREITVPKGIAVFHFRTP 70 (97)
T ss_dssp EEECCEEETTEEEEEETT----TEEEEEECTTCEEEEEET
T ss_pred EEEEEEcccceEEEEcCC----CcEEEEECCCEEEEEEEC
Confidence 456799999999998543 488999999854333333
Done!