Query 028566
Match_columns 207
No_of_seqs 260 out of 1243
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4.9E-27 1.7E-31 166.4 5.6 62 96-157 2-63 (63)
2 1u3e_M HNH homing endonuclease 87.9 0.0077 2.6E-07 48.5 -6.6 63 71-138 84-146 (174)
3 3igm_B PF14_0633 protein; AP2 81.7 0.47 1.6E-05 34.5 1.1 23 93-115 4-27 (77)
4 1z1b_A Integrase; protein-DNA 69.7 4.3 0.00015 33.8 4.1 41 99-144 15-55 (356)
5 3jtz_A Integrase; four strande 44.8 39 0.0013 24.1 5.1 44 100-144 28-75 (88)
6 1b69_A Protein (integrase); in 35.7 37 0.0013 23.9 3.6 23 94-116 9-31 (69)
7 1x60_A Sporulation-specific N- 32.4 20 0.00068 24.2 1.7 23 120-142 46-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 29.5 42 0.0014 22.9 3.0 23 120-142 46-68 (81)
9 3ju0_A Phage integrase; four s 27.2 90 0.0031 23.1 4.7 44 100-144 28-75 (108)
10 2ftc_I Mitochondrial ribosomal 22.4 1.2E+02 0.0041 23.0 4.7 36 107-146 79-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=4.9e-27 Score=166.42 Aligned_cols=62 Identities=89% Similarity=1.479 Sum_probs=59.3
Q ss_pred ceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 028566 96 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRI 157 (207)
Q Consensus 96 ~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~~G~~A~lNFp~~~ 157 (207)
+||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.++.+|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 69999988999999999999888899999999999999999999999999999999999875
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=87.94 E-value=0.0077 Score=48.52 Aligned_cols=63 Identities=8% Similarity=-0.144 Sum_probs=37.4
Q ss_pred cccccccccccccccCccCCCCCCCceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHH
Q 028566 71 KAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYD 138 (207)
Q Consensus 71 k~e~~~~~~~~~n~~n~~~~~~~~S~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD 138 (207)
-++.+.-.+..+|..+.......+ .++||.....++|.+.|... +..+||.|+|.+|||++|.
T Consensus 84 ~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 84 LSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred CHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence 334444444444544433222222 24677333346788888743 3477999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=81.69 E-value=0.47 Score=34.51 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.9
Q ss_pred CCCceEEeE-ECCCCcEEEEEecC
Q 028566 93 GGRHYRGVR-QRPWGKFAAEIRDP 115 (207)
Q Consensus 93 ~~S~yRGVr-~r~~GKW~A~Ir~~ 115 (207)
..|+|.||+ ....+.|.|.-.+.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCcEEeecCCceEEEEEecC
Confidence 578899994 55579999999975
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.74 E-value=4.3 Score=33.84 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=30.6
Q ss_pred EeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhh
Q 028566 99 GVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDI 144 (207)
Q Consensus 99 GVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~ 144 (207)
||++++.|.|..+.. .+|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~---~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP---RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT---TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee---cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 577777899998765 4678899996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=44.84 E-value=39 Score=24.09 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=29.5
Q ss_pred eEECCCC--cEEEEEecCCCCCeEEecCCCC--CHHHHHHHHHHHHHhh
Q 028566 100 VRQRPWG--KFAAEIRDPAKNGARVWLGTYE--TAEEAALAYDRAAFDI 144 (207)
Q Consensus 100 Vr~r~~G--KW~A~Ir~~~~~gkrv~LGtFd--T~EeAA~AYD~AA~~~ 144 (207)
++-.+.| .|.-+.+..++ .+++-||.|. |.++|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk-~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGK-ESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCe-EEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455554 58888875433 3678899997 5788877776665544
No 6
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=35.70 E-value=37 Score=23.86 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.9
Q ss_pred CCceEEeEECCCCcEEEEEecCC
Q 028566 94 GRHYRGVRQRPWGKFAAEIRDPA 116 (207)
Q Consensus 94 ~S~yRGVr~r~~GKW~A~Ir~~~ 116 (207)
.--+.|+.+++.|+|+.++.+..
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~ 31 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSF 31 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTT
T ss_pred CccCCCeEEccCCcEEEEEEcCC
Confidence 34578899999999999999853
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=32.42 E-value=20 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 028566 120 ARVWLGTYETAEEAALAYDRAAF 142 (207)
Q Consensus 120 krv~LGtFdT~EeAA~AYD~AA~ 142 (207)
.||++|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999888766544
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.53 E-value=42 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 028566 120 ARVWLGTYETAEEAALAYDRAAF 142 (207)
Q Consensus 120 krv~LGtFdT~EeAA~AYD~AA~ 142 (207)
.||.+|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 67999999999999888766544
No 9
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=27.18 E-value=90 Score=23.06 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=28.8
Q ss_pred eEECCCC--cEEEEEecCCCCCeEEecCCCC--CHHHHHHHHHHHHHhh
Q 028566 100 VRQRPWG--KFAAEIRDPAKNGARVWLGTYE--TAEEAALAYDRAAFDI 144 (207)
Q Consensus 100 Vr~r~~G--KW~A~Ir~~~~~gkrv~LGtFd--T~EeAA~AYD~AA~~~ 144 (207)
++-.+.| .|.-+.+..++ .+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK-~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKK-QRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCc-eEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455554 58888775433 3678899997 5777777766655544
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=22.41 E-value=1.2e+02 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=27.7
Q ss_pred cEEEEEecCCCCCeEEe-cCCCCCHHHHHHHHHHHHHhhcC
Q 028566 107 KFAAEIRDPAKNGARVW-LGTYETAEEAALAYDRAAFDIRG 146 (207)
Q Consensus 107 KW~A~Ir~~~~~gkrv~-LGtFdT~EeAA~AYD~AA~~~~G 146 (207)
.|+|+|.. |+-++ ++...+.+.|..|..+|+.++=+
T Consensus 79 ~wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999973 45444 66668899999999999998743
Done!