BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028570
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii
           From Higher Plants
 pdb|1VYK|A Chain A, Crystal Structure Of Psbq Protein Of Photosystem Ii From
           Higher Plants
          Length = 149

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 86  DATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL-KERFFIQPLSPXXXXXXXXXXXKDIL 144
           +A PI V            T NSD+ RD  LP  K+RF++QPL P            +IL
Sbjct: 1   EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL 60

Query: 145 NVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNV 202
           NVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I N+
Sbjct: 61  NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNL 118


>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
 pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
          Length = 341

 Score = 26.9 bits (58), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 13  GSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAA 72
           G  H+  V +   Q SG    N  +N++++V    FT     A+ +P    + +LG+  A
Sbjct: 245 GQGHTFYVTD--CQTSGTVDFNFDNNAKISVPASEFTAPLSYANGQPYPKCQLLLGISDA 302

Query: 73  GVASGSFVQA 82
            +   +F+++
Sbjct: 303 NILGDNFLRS 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,599,027
Number of Sequences: 62578
Number of extensions: 150641
Number of successful extensions: 379
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 4
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)