BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028570
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis
thaliana GN=PSBQ2 PE=1 SV=2
Length = 230
Score = 287 bits (734), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 145/206 (70%), Positives = 170/206 (82%), Gaps = 7/206 (3%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
MAQA+ SMAGLRG+S QAVLEGS Q++G NRLN SRV+V R G +RAQQ +
Sbjct: 1 MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55
Query: 59 PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
PE+SRR+++GLVAAG+A GSFV+AV A+A PIKVG PP PSGGLPGT NSD+ RD L L
Sbjct: 56 PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
K+RF+IQPLSP +AA RAK SAK+I+NVK IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
AKPK+EKQSLK+LT KLFQTI N+ +
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDY 201
>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia
oleracea GN=PSBQ PE=1 SV=1
Length = 232
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/203 (71%), Positives = 169/203 (83%), Gaps = 3/203 (1%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
MAQAMASMAGLRG+ SQAVLEGS Q+SG NRL+ P+ SRVAV + G +RAQQ S E E
Sbjct: 1 MAQAMASMAGLRGA--SQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAE 58
Query: 61 TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-K 119
TSRRAMLG VAAG+ASGSFV+AVLA+A PI VGPPPP SGGLPGT NSD+ RD LP K
Sbjct: 59 TSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTK 118
Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
+RF++QPL P +AA+RAK SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISA
Sbjct: 119 DRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISA 178
Query: 180 KPKDEKQSLKNLTGKLFQTIGNV 202
KPKDEK+SL+ LT KLF +I N+
Sbjct: 179 KPKDEKKSLQELTSKLFSSIDNL 201
>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBQ1 PE=1 SV=3
Length = 224
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/202 (68%), Positives = 162/202 (80%), Gaps = 9/202 (4%)
Query: 5 MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSR 63
MASM GL G+S AVLEGS +++G +RLN + RVAVA R VRAQQ+ ETSR
Sbjct: 1 MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSR 53
Query: 64 RAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLP-GTLNSDEPRDLDLPLKERF 122
R+++GLVAAG+A GSFVQAVLADA IKVGPPP PSGGLP GT NSD+ RD L LK+RF
Sbjct: 54 RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113
Query: 123 FIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182
++QPL P +AA RAK SAKDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK
Sbjct: 114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173
Query: 183 DEKQSLKNLTGKLFQTIGNVSF 204
DEK+SLK+LT KLF TI N+ +
Sbjct: 174 DEKKSLKDLTTKLFDTIDNLDY 195
>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays
GN=PSBQ1 PE=2 SV=1
Length = 217
Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 122/204 (59%), Positives = 146/204 (71%), Gaps = 20/204 (9%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNE-P 59
MAQAMASM GL SQ VL P+R A S +R AV VRA +
Sbjct: 1 MAQAMASMTGL-----SQGVL--------PSR-RADSRTRTAV----VIVRASAEGDAVA 42
Query: 60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
+ RRA++GLVA G+ G+ QA A+ IK+G PPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 43 QAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPL 102
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
KERF++QPL PA+AA R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I+
Sbjct: 103 KERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIA 162
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNV 202
+KPK+EK+SLK LTGKLF TI ++
Sbjct: 163 SKPKEEKKSLKELTGKLFSTIDDL 186
>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis
viciifolia GN=PSBQ PE=2 SV=1
Length = 231
Score = 186 bits (473), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 122/214 (57%), Positives = 150/214 (70%), Gaps = 22/214 (10%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRA-------- 52
MAQAMAS +LEGS QL + ++ S+ A F VRA
Sbjct: 1 MAQAMAS-----------GLLEGSLQLMSGSNRSSSSSRTRGPAGV-FIVRAQQQEQQQG 48
Query: 53 -QQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEP 111
++ +P+++RRAMLGLVA G+AS SFVQAVLA+A PIKVG PPPPSGGL GTLNSDE
Sbjct: 49 MSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEA 108
Query: 112 RDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY 171
RDL LPLKERF+IQPLSP +AA+R + SAK+I+ VK+ ID+K NDLRLRASYLRY
Sbjct: 109 RDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRY 168
Query: 172 DLNTIISAKPKDEKQSLKNLT-GKLFQTIGNVSF 204
DLNT+IS+KPK++KQSLK + GKLFQ I N+ +
Sbjct: 169 DLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDY 202
>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa
subsp. japonica GN=Os07g0544800 PE=2 SV=1
Length = 217
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/206 (60%), Positives = 150/206 (72%), Gaps = 20/206 (9%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
MAQAMASM GL SQ V QL +GP R A SR+AV R Q
Sbjct: 1 MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43
Query: 60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
T RRA+LGLVA G+A G+ QA LA+A PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44 -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
+ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
+KPKDEK+ LK+LTGKLF TI +
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDH 188
>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa
subsp. indica GN=OsI_025465 PE=1 SV=2
Length = 217
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/206 (60%), Positives = 150/206 (72%), Gaps = 20/206 (9%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
MAQAMASM GL SQ V QL +GP R A SR+AV R Q
Sbjct: 1 MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43
Query: 60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
T RRA+LGLVA G+A G+ QA LA+A PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44 -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
+ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
+KPKDEK+ LK+LTGKLF TI +
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDH 188
>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays
GN=PSBQ2 PE=3 SV=1
Length = 213
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 134/203 (66%), Gaps = 22/203 (10%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
MAQAMASM GL SQ V + A S +R AV + + + P
Sbjct: 1 MAQAMASMTGL-----SQGVCPAA----------ADSRTRTAVVVVRASAEGDRCAGGPR 45
Query: 61 TSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPLK 119
R + A +S QAV A+ IK+G PPPPSGGLPGTLNSD+ RD DLPLK
Sbjct: 46 CDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLK 99
Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
ERF++QPL PA+A R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++
Sbjct: 100 ERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIAS 159
Query: 180 KPKDEKQSLKNLTGKLFQTIGNV 202
KPK+EK+SLK LTGKLF TI ++
Sbjct: 160 KPKEEKKSLKELTGKLFSTIDDL 182
>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1
PE=1 SV=1
Length = 190
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
+KE++F+ LSP AA R K +A+ + +++E++D +W YV +RL+ +YL DL +
Sbjct: 75 IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134
Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNVSFF 205
+ P+ + +L + + + F+
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDFY 162
>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2
PE=1 SV=1
Length = 220
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 39 SRVAVARPGFTVRAQQASNEPET---SRRAMLGLVAAGVASGSFVQ--AVLADATPIKVG 93
SR GF R + EP++ +RR LG + +G + LA +
Sbjct: 23 SRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSIGLTGILGENNVSLAQDNGFWID 82
Query: 94 PPPPPSGGLPGTLNS--DEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELID 151
P P +P N+ +E +K+ ++ + R K +A D+L +++LI
Sbjct: 83 GPLP----IPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIG 138
Query: 152 KKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQ 197
YV+ LRL++++L YD + +ISA ++KQ L +L +LF
Sbjct: 139 PDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLFD 184
>sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBQ PE=2 SV=1
Length = 199
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 110 EPRDLDLP--LKERFFIQPLSPAQAAERAKASAKDI-LNVKELIDKKAWPYVQNDLRLRA 166
E RDLDLP ++E F S + +R K S I ++ I K W + LR +
Sbjct: 73 EARDLDLPQNVREGFTQARASLDETKKRVKESEARIDADLDVFIQKSYWTEAREQLRRQV 132
Query: 167 SYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSF 204
LR+DLNT+ S K K+ K++ L + Q + ++ F
Sbjct: 133 GTLRFDLNTLASTKEKEAKKAALGLRKEFIQAVEDLDF 170
>sp|P19589|PSBQ_PEA Oxygen-evolving enhancer protein 3 (Fragment) OS=Pisum sativum
GN=PSBQ PE=1 SV=1
Length = 32
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 26/32 (81%)
Query: 86 DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
+A PIKVG PPP S GLPGTLNSDE RDL LP
Sbjct: 1 EAIPIKVGGPPPLSXGLPGTLNSDEARDLKLP 32
>sp|Q2V4B2|PQL3_ARATH PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3
PE=2 SV=1
Length = 187
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 132 AAERAKASAKDILNVKE-LIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
A E + +A++I +KE +I+KK W +LR AS ++ D II AKP ++ ++
Sbjct: 86 AQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRS 145
Query: 191 LTGKLFQTIGNVSF 204
L LF +I + +
Sbjct: 146 LYSSLFNSITKMDY 159
>sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer protein 3, chloroplastic OS=Volvox carteri
GN=PSBQ PE=2 SV=1
Length = 202
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 39 SRVAVA-RPGFTVRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPIKV-GPP 95
SR AVA R G V +AS E SRRA+LG L+A+ V + + A ATP+ +
Sbjct: 9 SRPAVASRRGVVV--VRASVE---SRRAVLGGLLASTVVALTSANKAQAAATPVDLFDDR 63
Query: 96 PPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAA-----ERAKASAKDI-LNVKEL 149
G E RDLDL R L A+ + +R K S I +++
Sbjct: 64 KVRETGFDLIY---EARDLDLRQSAR---DGLDQARGSIDATIKRVKESETRIDADLEGF 117
Query: 150 IDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
I K W + LR + LR+DLNT+ SAK
Sbjct: 118 IKKNYWTEAREQLRRQVGTLRFDLNTLASAK 148
>sp|Q8EUV6|MNME_MYCPE tRNA modification GTPase MnmE OS=Mycoplasma penetrans (strain HF-2)
GN=mnmE PE=3 SV=1
Length = 444
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 104 GTLNSDEPRDLDLPLKERFFI------QPLSPAQAAERAKASAKDI-LNVKELIDKKAWP 156
G +NS+ D L +KE+ F + + + + +AK+ L VKE+IDK
Sbjct: 145 GIINSN--NDFFLDIKEKIFYLIGKIEVNIDYPEYEDVEQVTAKEFNLEVKEIIDK--LN 200
Query: 157 YVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
ND + SYL LN +I KP K SL N
Sbjct: 201 KTINDFN-KVSYLYNGLNVVIVGKPNVGKSSLLN 233
>sp|Q86V15|CASZ1_HUMAN Zinc finger protein castor homolog 1 OS=Homo sapiens GN=CASZ1 PE=1
SV=4
Length = 1759
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 71 AAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKE 120
+A GS Q A P +V P P S G PG + + R LDL +KE
Sbjct: 888 SATFDPGSGQQVTPARFPPAQVKPEPGESTGAPGPHEASQDRSLDLTVKE 937
>sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus (strain VF5) GN=uvrB
PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 111 PRDLDLPLKERFFIQPLSPAQAAE---RAKASAKDILNVKELIDKKAWPYVQN 160
P+ + P+KE I+ L E + S +DIL E ++K+ W Y QN
Sbjct: 588 PKSIKKPVKELLAIEELDYVSVPEELPKGVKSEEDILKKIEKLEKEMWKYAQN 640
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,453,820
Number of Sequences: 539616
Number of extensions: 3114529
Number of successful extensions: 10328
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 10248
Number of HSP's gapped (non-prelim): 94
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)