Query 028570
Match_columns 207
No_of_seqs 98 out of 100
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 22:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyk_A Oxygen-evolving enhance 100.0 2.3E-50 7.7E-55 330.4 9.6 121 86-206 1-122 (149)
2 3zsu_A TLL2057 protein, cyanoq 99.7 2.8E-17 9.7E-22 132.1 6.9 75 132-206 26-100 (130)
3 3ls0_A SLL1638 protein, PSBQ; 99.7 5.6E-17 1.9E-21 130.9 7.7 75 132-206 28-103 (133)
4 3rfy_A Peptidyl-prolyl CIS-tra 88.4 1.1 3.7E-05 41.0 7.2 71 136-206 50-123 (369)
5 2w6b_A RHO guanine nucleotide 53.8 11 0.00038 26.1 3.1 52 149-200 2-55 (56)
6 2js5_A Uncharacterized protein 40.7 23 0.00077 25.6 3.1 44 161-205 14-57 (71)
7 3csx_A Putative uncharacterize 38.4 25 0.00087 25.9 3.2 44 161-205 26-69 (81)
8 1ykh_B RNA polymerase II holoe 37.2 1.1E+02 0.0038 23.6 7.0 33 127-182 50-82 (132)
9 1yke_B RNA polymerase II holoe 36.6 1.1E+02 0.0036 24.4 6.9 33 127-182 50-82 (151)
10 3bpv_A Transcriptional regulat 33.0 69 0.0023 22.5 4.8 30 174-203 109-138 (138)
11 2pv7_A T-protein [includes: ch 32.7 93 0.0032 25.9 6.3 62 128-201 233-294 (298)
12 2r9v_A ATP synthase subunit al 31.1 1.3E+02 0.0046 28.5 7.6 75 117-198 432-512 (515)
13 2wsc_N PSAN, PSI-N, photosyste 30.9 26 0.00089 28.8 2.4 28 48-75 42-73 (170)
14 2ck3_A ATP synthase subunit al 30.5 1.5E+02 0.0051 28.1 7.8 76 117-199 427-508 (510)
15 3vr4_A V-type sodium ATPase ca 25.5 2E+02 0.007 27.9 7.9 76 119-202 504-591 (600)
16 2p06_A Hypothetical protein AF 24.7 55 0.0019 24.8 3.0 31 140-170 66-96 (114)
17 1q90_R Cytochrome B6-F complex 24.7 28 0.00095 23.2 1.3 17 59-75 7-23 (49)
18 4a1q_A ORF E73; viral protein, 24.6 49 0.0017 23.5 2.6 41 157-197 19-71 (73)
19 2j8p_A Cleavage stimulation fa 22.8 41 0.0014 22.5 1.8 23 176-198 23-45 (49)
20 3mab_A Uncharacterized protein 22.1 1.3E+02 0.0046 22.0 4.7 16 180-195 70-85 (93)
21 3cjn_A Transcriptional regulat 22.0 1.6E+02 0.0055 21.3 5.2 31 173-203 131-161 (162)
22 2her_A Fragment, farnesyl pyro 21.9 1.5E+02 0.0052 26.5 5.9 55 144-201 302-357 (368)
23 3s2w_A Transcriptional regulat 21.8 1.8E+02 0.0061 21.1 5.5 30 173-202 129-158 (159)
24 1x3u_A Transcriptional regulat 21.0 1.8E+02 0.006 18.8 7.0 64 129-194 10-73 (79)
25 3deu_A Transcriptional regulat 20.5 1.5E+02 0.0052 22.1 4.9 34 171-204 131-164 (166)
26 3r6n_A Desmoplakin; spectrin r 20.4 3E+02 0.01 25.2 7.7 87 114-203 324-418 (450)
27 4aik_A Transcriptional regulat 20.4 80 0.0027 23.6 3.3 30 174-203 112-141 (151)
28 3kp1_E D-ornithine aminomutase 20.4 2.5E+02 0.0086 22.0 6.2 60 117-176 7-67 (121)
29 3k0l_A Repressor protein; heli 20.3 1.6E+02 0.0055 21.5 4.9 32 172-203 124-155 (162)
30 3lay_A Zinc resistance-associa 20.2 1.1E+02 0.0037 24.9 4.2 37 161-198 89-125 (175)
No 1
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=100.00 E-value=2.3e-50 Score=330.35 Aligned_cols=121 Identities=68% Similarity=1.098 Sum_probs=99.0
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCCCCccc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhh
Q 028570 86 DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRL 164 (207)
Q Consensus 86 ~~~~i~~~p~P~ps~~~~Gt~~~~eardl~l~l-kerf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRl 164 (207)
|+.+||++||||||||+|||+||||||||+||+ |||||+|+++|+||++|||++|++|++|++||++++|+|||||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~ 80 (149)
T 1vyk_A 1 EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 80 (149)
T ss_dssp CCSCEECCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 357999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570 165 RASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS 206 (207)
Q Consensus 165 ka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa 206 (207)
|++||||||++||++||+++|+++++||++||++|++||+||
T Consensus 81 ~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AA 122 (149)
T 1vyk_A 81 RASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAA 122 (149)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997
No 2
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=99.69 E-value=2.8e-17 Score=132.11 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570 132 AAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS 206 (207)
Q Consensus 132 Aa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa 206 (207)
=+.+|.+..++|.+|+.||++++|.++||+||++.|.||+||++|..+|++.+||++++|+++||++|++||+||
T Consensus 26 y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA 100 (130)
T 3zsu_A 26 YLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGA 100 (130)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999655555599999999999999999986
No 3
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=99.68 E-value=5.6e-17 Score=130.86 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570 132 AAERAKASAKDILN-VKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS 206 (207)
Q Consensus 132 Aa~RIkesA~~L~~-lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa 206 (207)
=+.+|.+..++|.+ |+.||++++|.++||+||++.|.||+||++|.++|++.+||++++|+++||++|++||+||
T Consensus 28 y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA 103 (133)
T 3ls0_A 28 YVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAA 103 (133)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999 9999999999999999999999999999999999654444599999999999999999986
No 4
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=88.43 E-value=1.1 Score=41.02 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhh---cChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570 136 AKASAKDILNVKELIDK---KAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS 206 (207)
Q Consensus 136 IkesA~~L~~lk~lIdk---ksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa 206 (207)
||+-=+.|..+-++|.- |.|.-+.++++.-+..|..+=+.|+.+.|.++|++..+|.++|=..|++|..++
T Consensus 50 ~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~~~~ 123 (369)
T 3rfy_A 50 IREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIV 123 (369)
T ss_dssp HHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677777765 999999999999999999999999999999999999999999999999987664
No 5
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=53.82 E-value=11 Score=26.13 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=37.8
Q ss_pred HhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhh--HHHHHHHHHHhhhhh
Q 028570 149 LIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEK--QSLKNLTGKLFQTIG 200 (207)
Q Consensus 149 lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqK--k~l~~La~kLF~~le 200 (207)
.|+.++..++--.||-....|++|.+.+-.++.++|| +.|..+-.++..++.
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~~ 55 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 55 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3567777888888999999999999999999887765 345555566655543
No 6
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=40.66 E-value=23 Score=25.58 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=38.8
Q ss_pred HhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhccccc
Q 028570 161 DLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFF 205 (207)
Q Consensus 161 ~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~A 205 (207)
-|..+++.+.-||-.|...+|-+-. .+-++|.+.|+.+.+||.|
T Consensus 14 KL~~~A~q~kmdLHDLaEdLP~~w~-~i~~vA~~tyda~~~l~~a 57 (71)
T 2js5_A 14 KLNAQATALKMDLHDLAEDLPTGWN-RIMEVAEKTYEAYRQLDEF 57 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTSGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhccchhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999998776 8999999999999988764
No 7
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=38.37 E-value=25 Score=25.90 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=38.3
Q ss_pred HhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhccccc
Q 028570 161 DLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFF 205 (207)
Q Consensus 161 ~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~A 205 (207)
-|..+++.+.-||-.|...+|-+-. .+-++|.+.|+-+.+||.|
T Consensus 26 KL~~~A~q~kmdLHDLaEdLP~~w~-~i~~vA~~tyda~~~l~~a 69 (81)
T 3csx_A 26 KLNSKAGQMKMDLHDLAEGLPTDYE-NLVETAEKTYEIFRELDQL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999998776 8999999999999888764
No 8
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.19 E-value=1.1e+02 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCCh
Q 028570 127 LSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182 (207)
Q Consensus 127 ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPk 182 (207)
.++++-...|++.+.+|..- -+|+.+||+++|.
T Consensus 50 ~~~~~f~~~~~ela~dli~k-----------------------~kqIe~LIdsLP~ 82 (132)
T 1ykh_B 50 VPPEEFSNTIDELSTDIILK-----------------------TRQINKLIDSLPG 82 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhCCC
Confidence 56788899999999888741 2578899999984
No 9
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.58 E-value=1.1e+02 Score=24.44 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCCh
Q 028570 127 LSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182 (207)
Q Consensus 127 ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPk 182 (207)
.++++-...|++.+.+|..- -+|+.+||+++|.
T Consensus 50 ~~~~~f~~~~~ela~dli~k-----------------------akqIe~LIdsLPg 82 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILK-----------------------TRQINKLIDSLPG 82 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhCCC
Confidence 56788899999999988741 3578899999984
No 10
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=33.05 E-value=69 Score=22.51 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=24.7
Q ss_pred HHHHhcCChhhhHHHHHHHHHHhhhhhccc
Q 028570 174 NTIISAKPKDEKQSLKNLTGKLFQTIGNVS 203 (207)
Q Consensus 174 ~tlIsskPkdqKk~l~~La~kLF~~le~LD 203 (207)
..+++.+++++.+.+.++-.++.++++++|
T Consensus 109 ~~~~~~l~~~e~~~l~~~l~~~~~~l~~~~ 138 (138)
T 3bpv_A 109 DLLFRDFTEDERKLFRKMCRRLAEEAVRMR 138 (138)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 445667899999999999999999998875
No 11
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=32.69 E-value=93 Score=25.88 Aligned_cols=62 Identities=5% Similarity=-0.000 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhc
Q 028570 128 SPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGN 201 (207)
Q Consensus 128 s~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~ 201 (207)
++.++..-+++..++|..+++.|+.+.|..+..++..-.. +|- +..++......+|++.+.+
T Consensus 233 sn~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~a~~-~~~-----------~~~~~~~~~~~~~~~~~~~ 294 (298)
T 2pv7_A 233 DKSENLAVIETLKQTYDEALTFFENNDRQGFIDAFHKVRD-WFG-----------DYSEQFLKESRQLLQQAND 294 (298)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHT-----------THHHHHHHHHHHHHHHCC-
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHh-----------hcchHHHHHHHHHHHHHHh
Confidence 3344444788888899999999999999988887754333 222 1222344556666666543
No 12
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=31.12 E-value=1.3e+02 Score=28.46 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=52.9
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHh---HHHHHHhc---CChhhhHHHHH
Q 028570 117 PLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY---DLNTIISA---KPKDEKQSLKN 190 (207)
Q Consensus 117 ~lkerf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~---DL~tlIss---kPkdqKk~l~~ 190 (207)
|||-.+|. +.++++.+..+... .+.++++-.+.++..|.+.=..|++. |+-.-|.. +.++-++.+++
T Consensus 432 fL~Q~~~~-~~~~~e~~~~l~~~------~~g~ld~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 504 (515)
T 2r9v_A 432 LLKQEQYS-PMPVEEQVVVLFAG------VRGYLDDLPVEEVRRFEKEFLRFMHEKHQDILDDIKTKKELTSETEEKLKK 504 (515)
T ss_dssp HTCCCTTC-CCCHHHHHHHHHHH------HTTTTTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HhcCCCCC-CCCHHHHHHHHHHH------HhhhhccccHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44444444 35788888777764 67888899999999999988888874 44343433 45777778888
Q ss_pred HHHHHhhh
Q 028570 191 LTGKLFQT 198 (207)
Q Consensus 191 La~kLF~~ 198 (207)
..++|-+.
T Consensus 505 ~~~~~~~~ 512 (515)
T 2r9v_A 505 AIEEFKTT 512 (515)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777543
No 13
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=30.88 E-value=26 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred eEEeecccCCC---cchhhHH-HHHHHHHHHh
Q 028570 48 FTVRAQQASNE---PETSRRA-MLGLVAAGVA 75 (207)
Q Consensus 48 ~~vra~~~~~~---~~~sRRa-~lgl~aa~la 75 (207)
-++|++|.... ....||+ +|||.++.++
T Consensus 42 p~~ka~~~~~~~~~~~~~rRaAl~~LaA~l~~ 73 (170)
T 2wsc_N 42 PLIKAHQAKVTESKSDQGRRSALVYLAATLFT 73 (170)
T ss_dssp --------------------------------
T ss_pred CcceeeeeecccccccchhHHHHHHHHHHHHH
Confidence 56777763211 1236785 6777765433
No 14
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=30.48 E-value=1.5e+02 Score=28.07 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=54.0
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHh---HHHHHHhc---CChhhhHHHHH
Q 028570 117 PLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY---DLNTIISA---KPKDEKQSLKN 190 (207)
Q Consensus 117 ~lkerf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~---DL~tlIss---kPkdqKk~l~~ 190 (207)
|||-.||. +.+.++.+..+... .+.++++-.|.++..|.+.=..|++. |+-.-|.. +.++-++.+++
T Consensus 427 fL~Q~~~~-~~~~~~~~~~l~~~------~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 499 (510)
T 2ck3_A 427 LLKQGQYS-PMAIEEQVAVIYAG------VRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKE 499 (510)
T ss_dssp TTCCCSSC-CCCHHHHHHHHHHH------HTTSSTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HhcCCCCC-CCCHHHHHHHHHHH------HhhhhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44444443 36888888877764 67888999999999999998888874 44444443 45777778888
Q ss_pred HHHHHhhhh
Q 028570 191 LTGKLFQTI 199 (207)
Q Consensus 191 La~kLF~~l 199 (207)
..++|-+.+
T Consensus 500 ~~~~~~~~~ 508 (510)
T 2ck3_A 500 IVTNFLAGF 508 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887775543
No 15
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=25.47 E-value=2e+02 Score=27.86 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=39.6
Q ss_pred ccccccCC--------CCHHHHHHHHHHHHHHHHHHHHHhh-hcChhHHHHH---hhhhhhhhHhHHHHHHhcCChhhhH
Q 028570 119 KERFFIQP--------LSPAQAAERAKASAKDILNVKELID-KKAWPYVQND---LRLRASYLRYDLNTIISAKPKDEKQ 186 (207)
Q Consensus 119 kerf~~~~--------ls~~eAa~RIkesA~~L~~lk~lId-kksW~yv~~~---LRlka~~Lr~DL~tlIsskPkdqKk 186 (207)
+++|..|+ .+++....-++.-..=...-.++|+ .-.|..++++ ++-+..-|+| .|.++.+
T Consensus 504 ~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~--------~~~~~~~ 575 (600)
T 3vr4_A 504 REDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIMEGTVAVRERISRSKY--------IPEEELA 575 (600)
T ss_dssp HHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHCHHHHHHHHTGGG--------SCGGGTH
T ss_pred HHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHhcC--------CCcchHH
Confidence 46788888 3444444444332222222333444 4569998884 3333333332 4444555
Q ss_pred HHHHHHHHHhhhhhcc
Q 028570 187 SLKNLTGKLFQTIGNV 202 (207)
Q Consensus 187 ~l~~La~kLF~~le~L 202 (207)
.+.++.+++-+.|++|
T Consensus 576 ~~~~~~~~~~~~~~~~ 591 (600)
T 3vr4_A 576 KISSINEEIKETIQLI 591 (600)
T ss_dssp HHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777766665555544
No 16
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=24.68 E-value=55 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcChhHHHHHhhhhhhhhH
Q 028570 140 AKDILNVKELIDKKAWPYVQNDLRLRASYLR 170 (207)
Q Consensus 140 A~~L~~lk~lIdkksW~yv~~~LRlka~~Lr 170 (207)
-++|.++++-+++..|...+..|---+.|--
T Consensus 66 feemdelreavekedwenlrdelldvanfcm 96 (114)
T 2p06_A 66 FEEMDELREAVEKEDWENLRDELLDVANFCM 96 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999888765555433
No 17
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=24.68 E-value=28 Score=23.23 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=12.4
Q ss_pred cchhhHHHHHHHHHHHh
Q 028570 59 PETSRRAMLGLVAAGVA 75 (207)
Q Consensus 59 ~~~sRRa~lgl~aa~la 75 (207)
+.-+||.+|.+++.++.
T Consensus 7 pdm~RRqfln~l~~G~~ 23 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGA 23 (49)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 44689999887775555
No 18
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=24.56 E-value=49 Score=23.49 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=33.0
Q ss_pred HHHHHhhhhhhhhHhHHHHHHh---------c---CChhhhHHHHHHHHHHhh
Q 028570 157 YVQNDLRLRASYLRYDLNTIIS---------A---KPKDEKQSLKNLTGKLFQ 197 (207)
Q Consensus 157 yv~~~LRlka~~Lr~DL~tlIs---------s---kPkdqKk~l~~La~kLF~ 197 (207)
+|-..|.+-+-||..||..+|. . +|++-++...+..+.||-
T Consensus 19 dvy~~lklvsvylnrdmteiieeavvmwliqnkek~p~el~pki~ei~krffp 71 (73)
T 4a1q_A 19 DVYHTLKLVSVYLNRDMTEIIEEAVVMWLIQNKEKLPNELKPKIDEISKRFFP 71 (73)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHGGGCCTTTTTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhhhCchhhCccHHHHHHhccC
Confidence 4556677888899999998774 2 689999999999999884
No 19
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=22.81 E-value=41 Score=22.51 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHhcCChhhhHHHHHHHHHHhhh
Q 028570 176 IISAKPKDEKQSLKNLTGKLFQT 198 (207)
Q Consensus 176 lIsskPkdqKk~l~~La~kLF~~ 198 (207)
-|+.+|.++|..+..|-..|-.+
T Consensus 23 QI~~LPp~qR~qI~~LR~q~~~~ 45 (49)
T 2j8p_A 23 QIAMLPPEQRQSILILKEQIQKS 45 (49)
T ss_dssp HHHTSCHHHHTHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhc
Confidence 47889999999999988776543
No 20
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=22.11 E-value=1.3e+02 Score=21.97 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=11.2
Q ss_pred CChhhhHHHHHHHHHH
Q 028570 180 KPKDEKQSLKNLTGKL 195 (207)
Q Consensus 180 kPkdqKk~l~~La~kL 195 (207)
+|.++|++|++.++.|
T Consensus 70 l~~~~K~~L~~~~~~l 85 (93)
T 3mab_A 70 LDEAKKIELKKFHQSL 85 (93)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6788888886655443
No 21
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=22.01 E-value=1.6e+02 Score=21.34 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHhhhhhccc
Q 028570 173 LNTIISAKPKDEKQSLKNLTGKLFQTIGNVS 203 (207)
Q Consensus 173 L~tlIsskPkdqKk~l~~La~kLF~~le~LD 203 (207)
+..++..+++++.+.+.++-+++.+++++-|
T Consensus 131 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 161 (162)
T 3cjn_A 131 HDRMFQGITPQERQAFLATLNKMLANIRVHE 161 (162)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccC
Confidence 3456667899999999999999999988765
No 22
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=21.91 E-value=1.5e+02 Score=26.54 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=38.1
Q ss_pred HHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCC-hhhhHHHHHHHHHHhhhhhc
Q 028570 144 LNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKP-KDEKQSLKNLTGKLFQTIGN 201 (207)
Q Consensus 144 ~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskP-kdqKk~l~~La~kLF~~le~ 201 (207)
..+++++.+- .+..+-+.............|..+| .+.|+.|..|++++|..+++
T Consensus 302 ~~v~~li~~~---g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~~~~~ 357 (368)
T 2her_A 302 SLVKDCYNLL---KINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITN 357 (368)
T ss_dssp HHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHC---CcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhc
Confidence 4555555443 2344444444555667778888888 46788899999999999875
No 23
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=21.81 E-value=1.8e+02 Score=21.12 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.0
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHhhhhhcc
Q 028570 173 LNTIISAKPKDEKQSLKNLTGKLFQTIGNV 202 (207)
Q Consensus 173 L~tlIsskPkdqKk~l~~La~kLF~~le~L 202 (207)
...+...+++++.+.+.++-+++.++++++
T Consensus 129 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~ 158 (159)
T 3s2w_A 129 GEILFSSFDDRQRREITNSLEIMFENGLKI 158 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 344566789999999999999999999875
No 24
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.00 E-value=1.8e+02 Score=18.77 Aligned_cols=64 Identities=6% Similarity=0.085 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHH
Q 028570 129 PAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGK 194 (207)
Q Consensus 129 ~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~k 194 (207)
..++...+.+...+++.+ +++..+..++-..+-.+.+..+.-++.+...+-...+.++..++.+
T Consensus 10 l~~~l~~L~~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~ 73 (79)
T 1x3u_A 10 IRARLQTLSERERQVLSA--VVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALA 73 (79)
T ss_dssp HHHHHHHHCHHHHHHHHH--HTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456667777777777777 5899999999999999999999999999999776666666666544
No 25
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=20.46 E-value=1.5e+02 Score=22.10 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=26.8
Q ss_pred hHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccc
Q 028570 171 YDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSF 204 (207)
Q Consensus 171 ~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~ 204 (207)
.-+..+++.+++++++.+.++-.++.+++++++.
T Consensus 131 ~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~~ 164 (166)
T 3deu_A 131 KTRGEILAGISSEEIELLIKLIAKLEHNIMELHS 164 (166)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345666779999999999999999999998753
No 26
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=20.43 E-value=3e+02 Score=25.21 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=47.7
Q ss_pred CCcccccccccCCCCHHHHHHH---HHHHHHHHHHHHH--Hh---hhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhh
Q 028570 114 LDLPLKERFFIQPLSPAQAAER---AKASAKDILNVKE--LI---DKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEK 185 (207)
Q Consensus 114 l~l~lkerf~~~~ls~~eAa~R---IkesA~~L~~lk~--lI---dkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqK 185 (207)
...++.-=+|+-|-+-.||+.+ +.+.-+.|.++=. .| .--+|.|+.+||+.=-+. ++.++-.-.|.+.+
T Consensus 324 ~~~~vPavcf~ipppd~eai~~a~~l~~~~~~~~~lw~~~~~~~~~~~~~~~~~~d~~~i~~w---~~~~~~~~~~~~~~ 400 (450)
T 3r6n_A 324 VDMLVPSVGLIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAM---TIAKLKTMRQEDYM 400 (450)
T ss_dssp CCEEEEGGGEECCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CHHHHTTSCTTTHH
T ss_pred CeeccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhcCHHHHH
Confidence 4455554455544444456554 4444444443322 11 123477777776654433 23333334789999
Q ss_pred HHHHHHHHHHhhhhhccc
Q 028570 186 QSLKNLTGKLFQTIGNVS 203 (207)
Q Consensus 186 k~l~~La~kLF~~le~LD 203 (207)
+-++.|-..+=+.+.+.+
T Consensus 401 ~~~~~l~~~~~~f~~~~~ 418 (450)
T 3r6n_A 401 KTIADLELHYQEFIRNSQ 418 (450)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 889888777666665554
No 27
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.42 E-value=80 Score=23.57 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.1
Q ss_pred HHHHhcCChhhhHHHHHHHHHHhhhhhccc
Q 028570 174 NTIISAKPKDEKQSLKNLTGKLFQTIGNVS 203 (207)
Q Consensus 174 ~tlIsskPkdqKk~l~~La~kLF~~le~LD 203 (207)
..+.+.+++++++.+..+-+++.+|++++.
T Consensus 112 ~~~~~~l~~ee~~~l~~~L~kl~~nl~~l~ 141 (151)
T 4aik_A 112 KEILGGISSDEIAVLSGLIDKLEKNIIQLQ 141 (151)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666899999999999999999998875
No 28
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=20.40 E-value=2.5e+02 Score=21.96 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=47.7
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHH-HHHHHhhhcChhHHHHHhhhhhhhhHhHHHHH
Q 028570 117 PLKERFFIQPLSPAQAAERAKASAKDIL-NVKELIDKKAWPYVQNDLRLRASYLRYDLNTI 176 (207)
Q Consensus 117 ~lkerf~~~~ls~~eAa~RIkesA~~L~-~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tl 176 (207)
|..-|=-++.++-+|-..|.++.|++|. .|.+|+++..=+-|-+-+=+..|+=.-|-+.|
T Consensus 7 f~~r~~hl~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGidgvda~~i 67 (121)
T 3kp1_E 7 FQQRRAHLANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGFSSLEAKAI 67 (121)
T ss_dssp HHHHTGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCCCccchHHH
Confidence 4445556889999999999999999998 69999999998888777666666655554443
No 29
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=20.27 E-value=1.6e+02 Score=21.54 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHhhhhhccc
Q 028570 172 DLNTIISAKPKDEKQSLKNLTGKLFQTIGNVS 203 (207)
Q Consensus 172 DL~tlIsskPkdqKk~l~~La~kLF~~le~LD 203 (207)
-...+...+++++++.+..+-.++.+++++++
T Consensus 124 ~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~ 155 (162)
T 3k0l_A 124 LEAQMLQGVDINLAFLIRNNLELMVKNLSTFS 155 (162)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455667899999999999999999998765
No 30
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.20 E-value=1.1e+02 Score=24.95 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=26.4
Q ss_pred HhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhh
Q 028570 161 DLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQT 198 (207)
Q Consensus 161 ~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~ 198 (207)
.||.+.--.+.+|+.++.+-..|+. .+.+|++++.+-
T Consensus 89 ~Lr~ql~akr~EL~aL~~a~~~Dea-kI~aL~~Ei~~L 125 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTASSPDTA-KINAVAKEMESL 125 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHH
Confidence 4677777889999999998444444 577777666553
Done!