BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028571
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
++Y++LG+ S S +IK+AY+++A ++HPD + PD EE ++F V EAYE LSD
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKN-PDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 133 RALYDR 138
R+LYDR
Sbjct: 69 RSLYDR 74
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
KE ++YD+LG+ + + E+K+AY+++A KYHPD +P + ++F ++ +AYE LSD
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE-----GEKFKQISQAYEVLSD 58
Query: 130 PGLRALYDR 138
R LYD+
Sbjct: 59 AKKRELYDK 67
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+YD+LG+P+S S +IK+A+ ++A KYHPD + E +F + EAYETLSD R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAE---AKFREIAEAYETLSDANRR 65
Query: 134 ALYDRDLSMGLHLAFSARRRQ 154
YD ++G H AF++ + Q
Sbjct: 66 KEYD---TLG-HSAFTSGKGQ 82
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG 131
+ +Y++L +P S IK+AY+++A K+HPD +P ++ EE +RF +V EAYE LSD
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVLSDAK 67
Query: 132 LRALYDR 138
R +YDR
Sbjct: 68 KRDIYDR 74
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
S+Y++L +P S S +IK+AY++ A ++HPD + PD E ++F V EAYE LSD
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKN-PDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 133 RALYDRDLSMGL 144
R +YDR GL
Sbjct: 62 REIYDRYGREGL 73
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
KE +YD+LG+ S E+K+AY++MA K+HPD +P + ++F ++ +AYE LSD
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSD 60
Query: 130 PGLRALYDR 138
R +YD+
Sbjct: 61 EKKRQIYDQ 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
KE YDLLG+ S + E+K+ Y++ A KYHPD D T++F + EA+E L+D
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILND 60
Query: 130 PGLRALYDR 138
P R +YD+
Sbjct: 61 PQKREIYDQ 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y +LG+P + S EIK+AY Q+A+KYHPD + D + ++F ++ EAYE LSD R
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKR 66
Query: 134 ALYD 137
YD
Sbjct: 67 KQYD 70
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y++LG+ ++ EI++AYK++A KYHPD + D+ E +F ++EAYE L+D R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKR 62
Query: 134 ALYDR 138
A YD+
Sbjct: 63 AAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y++LG+ ++ EI++AYK++A KYHPD + D+ E +F ++EAYE L+D R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKR 62
Query: 134 ALYDR 138
A YD+
Sbjct: 63 AAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y++LG+ ++ EI++AYK++A KYHPD + D+ E +F ++EAYE L+D R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKR 62
Query: 134 ALYDR 138
A YD+
Sbjct: 63 AAYDQ 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
S Y +LG+ ++ + +IK++Y+++A KYHPD +P + E +F + A+ L+D
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATK 75
Query: 133 RALYDRDLSMGLHLA 147
R +YD+ S+GL++A
Sbjct: 76 RNIYDKYGSLGLYVA 90
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
+FY LLG+ ++ S EI+QA+K++A K HPD +P + F+++ AYE L D L
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL 60
Query: 133 RALYDRDLSMGL 144
R YD+ GL
Sbjct: 61 RKKYDKYGEKGL 72
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y ++G+ + L IK AY+++ARKYHPDVS E RF V EA+E LSD R
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAE---ARFKEVAEAWEVLSDEQRR 63
Query: 134 ALYDR 138
A YD+
Sbjct: 64 AEYDQ 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
+FY LLG+ ++ S EI+QA+K++A K HPD +P + F+++ AYE L D L
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL 79
Query: 133 RALYDRDLSMGL 144
R YD+ GL
Sbjct: 80 RKKYDKYGEKGL 91
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y LG+ S EIK+AY++ A +YHPD + EE +F + EAY+ LSDP R
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEE---KFKEIAEAYDVLSDPRKR 61
Query: 134 ALYDRDLSMGL 144
++DR GL
Sbjct: 62 EIFDRYGEEGL 72
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
+ YDLLG+P + + +IK AY + YHPD + E +RF R+ +AY L L
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATL 75
Query: 133 RALYDRDL 140
R YDR L
Sbjct: 76 RRKYDRGL 83
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 75 YDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRA 134
Y +LG+ + S +IK+AYK++AR++HPD + E+ RFI++ +AYE LS+ R
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAED---RFIQISKAYEILSNEEKRT 76
Query: 135 LYDR 138
YD
Sbjct: 77 NYDH 80
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y +LG+ + L IK AY+++ARKYHPDVS + E +F + EA+E L D R
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA---KFKDLAEAWEVLKDEQRR 86
Query: 134 ALYDR 138
A YD+
Sbjct: 87 AEYDQ 91
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
+Y++LG+ S ++K+AY+++A K+HPD + T+ F + AY LS+P R
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 134 ALYDR 138
YD+
Sbjct: 66 KQYDQ 70
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVS----PPDRVEEYTQRFIRVQEAYETLSD 129
+Y +LG S ++ ++KQ Y+++ YHPD P VEE Q+FI + +A++ L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 130 PGLRALYD 137
+ YD
Sbjct: 72 EETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVS----PPDRVEEYTQRFIRVQEAYETLSD 129
+Y +LG S ++ ++KQ Y+++ YHPD P +EE Q+FI + +A++ L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 130 PGLRALYD 137
+ YD
Sbjct: 78 EETKKKYD 85
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 65 VVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPD-VSPPDRVEEYTQRFIRVQEA 123
++ +S++ +Y +LG+ + EI +AY+++A ++HPD + ++ ++FI + A
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 124 YETLSDPGLRALYD 137
E LSDP +R +D
Sbjct: 435 KEVLSDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 65 VVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPD-VSPPDRVEEYTQRFIRVQEA 123
++ +S++ +Y +LG+ + EI +AY+++A ++HPD + ++ ++FI + A
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 124 YETLSDPGLRALYD 137
E LSDP R +D
Sbjct: 435 KEVLSDPEXRKKFD 448
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP--PDRVEEYTQRFIRVQEAYETLSDPG 131
+Y LLG E S+ +I +K A + HPD P P VE F ++Q+A E L++
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVE----TFQKLQKAKEILTNEE 77
Query: 132 LRALYDR 138
RA YD
Sbjct: 78 SRARYDH 84
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 69 SKELSFYDLLGIPESVSL--VEIKQAYKQMARKYHPD----VSPPDRVEEYTQRFIRVQE 122
S ++++L G+P L + ++ + +++HPD S DR+ Q+ ++ +
Sbjct: 1 SNAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXA-VQQAAQIND 59
Query: 123 AYETLSDPGLRALY 136
AY+TL DP RA Y
Sbjct: 60 AYQTLKDPLRRAEY 73
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 75 YDLLGIP-ESVSLVEIKQAYKQMARKYHPD-VSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
YD+L + E ++ +AY+ +ARK+HPD V + +RF + AYETL D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 133 RALYD 137
+ YD
Sbjct: 78 KTNYD 82
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 73 SFYDLL--GIPESVSLVEIKQA-----YKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE 125
+FY+L P+ + + I Q+ Y+Q+ ++HPD++ ++ +++ + +AY
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA-----QQGSEQSSTLNQAYH 66
Query: 126 TLSDPGLRALY 136
TL DP R+ Y
Sbjct: 67 TLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 73 SFYDLL--GIPESVSLVEIKQA-----YKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE 125
+FY+L P+ + + I Q+ Y+Q+ ++HPD++ ++ +++ + +AY
Sbjct: 4 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA-----QQGSEQSSTLNQAYH 58
Query: 126 TLSDPGLRALY 136
TL DP R+ Y
Sbjct: 59 TLKDPLRRSQY 69
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQ 115
E YD+ G PE V +++ ++ A +Y+PDV + V +YT+
Sbjct: 59 EKHIYDVAGFPE-VPAIDLVESLWAQAERYNPDVVLNETVTKYTK 102
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 75 YDLLGIPESVSLVEIKQAYKQMARKYHPD--VSP 106
+D+LG+ S E+ +AY+++A HPD V+P
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63
>pdb|2H2U|A Chain A, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
pdb|2H2U|B Chain B, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
Length = 339
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 103 DVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL---HLAFSARRRQQNDV 158
D+ R +E F +++ Y TLSD G + + D G+ HLA+ R + +D+
Sbjct: 50 DLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVEWDKDHGVLESHLAYKGRGMELSDL 108
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 78 LGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQR-FIRVQEAYETLSDPGLRALY 136
+G+ + V+ ++K+ Y++ HPD + E+Y + F+ + +A+ + G + LY
Sbjct: 55 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 114
>pdb|1HBM|A Chain A, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|D Chain D, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase
pdb|1HBN|D Chain D, Methyl-Coenzyme M Reductase
pdb|1HBO|A Chain A, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|D Chain D, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBU|A Chain A, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|D Chain D, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|3M1V|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M1V|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
Length = 549
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARK-----YHPDVSPP 107
E K+ +FY L G +S E A K++A K Y+PD+ P
Sbjct: 18 EEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTP 62
>pdb|3POT|A Chain A, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
pdb|3POT|D Chain D, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
Length = 550
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARK-----YHPDVSPP 107
E K+ +FY L G +S E A K++A K Y+PD+ P
Sbjct: 19 EEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTP 63
>pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase
pdb|1MRO|D Chain D, Methyl-Coenzyme M Reductase
Length = 548
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARK-----YHPDVSPP 107
E K+ +FY L G +S E A K++A K Y+PD+ P
Sbjct: 18 EEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTP 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,577,734
Number of Sequences: 62578
Number of extensions: 195175
Number of successful extensions: 386
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 40
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)