Query 028571
Match_columns 207
No_of_seqs 316 out of 1748
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 13:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 4.7E-25 1E-29 194.6 8.2 74 70-145 2-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 4E-24 8.7E-29 184.8 8.3 76 69-146 13-88 (336)
3 PRK14288 chaperone protein Dna 99.8 2E-21 4.2E-26 173.7 8.3 73 71-145 2-74 (369)
4 PRK14296 chaperone protein Dna 99.8 7.5E-21 1.6E-25 170.1 7.9 72 71-145 3-74 (372)
5 KOG0712 Molecular chaperone (D 99.8 7.1E-21 1.5E-25 166.1 7.3 71 71-146 3-73 (337)
6 KOG0718 Molecular chaperone (D 99.8 2.8E-20 6E-25 166.2 9.6 79 68-146 5-84 (546)
7 PRK14286 chaperone protein Dna 99.8 2.4E-20 5.1E-25 166.9 8.4 73 71-145 3-75 (372)
8 PRK14279 chaperone protein Dna 99.8 3.4E-20 7.4E-25 166.8 8.0 70 71-142 8-77 (392)
9 KOG0716 Molecular chaperone (D 99.8 5E-20 1.1E-24 155.2 6.7 77 70-148 29-105 (279)
10 PTZ00037 DnaJ_C chaperone prot 99.8 6.2E-20 1.3E-24 166.3 7.3 69 71-145 27-95 (421)
11 KOG0719 Molecular chaperone (D 99.8 1.6E-19 3.4E-24 149.2 8.8 93 70-175 12-104 (264)
12 PRK14282 chaperone protein Dna 99.8 9.5E-20 2.1E-24 162.8 8.1 74 71-145 3-76 (369)
13 PRK14287 chaperone protein Dna 99.8 1.1E-19 2.5E-24 162.4 8.2 72 71-145 3-74 (371)
14 PRK14285 chaperone protein Dna 99.8 1.1E-19 2.5E-24 162.1 8.0 72 72-145 3-74 (365)
15 PRK14294 chaperone protein Dna 99.8 1.5E-19 3.2E-24 161.4 8.7 73 71-145 3-75 (366)
16 PF00226 DnaJ: DnaJ domain; I 99.8 1.9E-19 4E-24 122.0 6.9 64 73-137 1-64 (64)
17 PRK14277 chaperone protein Dna 99.8 1.7E-19 3.6E-24 162.1 8.6 73 71-145 4-76 (386)
18 PRK14298 chaperone protein Dna 99.8 1.3E-19 2.7E-24 162.5 7.5 72 71-145 4-75 (377)
19 PRK14283 chaperone protein Dna 99.8 1.4E-19 3.1E-24 162.2 7.9 72 71-145 4-75 (378)
20 PRK14276 chaperone protein Dna 99.8 1.4E-19 3E-24 162.3 7.6 72 71-145 3-74 (380)
21 PRK14301 chaperone protein Dna 99.8 1.8E-19 3.9E-24 161.2 7.7 73 71-145 3-75 (373)
22 PRK14297 chaperone protein Dna 99.8 1.7E-19 3.7E-24 161.8 7.4 72 72-145 4-75 (380)
23 PRK14295 chaperone protein Dna 99.8 2.6E-19 5.6E-24 161.0 8.2 73 71-145 8-84 (389)
24 PRK14291 chaperone protein Dna 99.8 2.4E-19 5.3E-24 160.9 7.7 72 71-145 2-73 (382)
25 PRK14284 chaperone protein Dna 99.8 3E-19 6.5E-24 160.7 8.3 71 72-144 1-71 (391)
26 PRK14280 chaperone protein Dna 99.8 3.3E-19 7E-24 159.8 8.0 71 72-145 4-74 (376)
27 PRK14299 chaperone protein Dna 99.8 4E-19 8.7E-24 154.2 8.1 71 71-144 3-73 (291)
28 PRK14281 chaperone protein Dna 99.8 4E-19 8.7E-24 160.2 7.7 72 72-145 3-74 (397)
29 PRK10767 chaperone protein Dna 99.8 6.2E-19 1.3E-23 157.7 8.1 73 71-145 3-75 (371)
30 PRK14278 chaperone protein Dna 99.8 6.1E-19 1.3E-23 158.1 7.0 68 72-142 3-70 (378)
31 KOG0691 Molecular chaperone (D 99.8 1.2E-18 2.6E-23 150.5 8.3 75 71-147 4-78 (296)
32 PRK14289 chaperone protein Dna 99.8 1.7E-18 3.7E-23 155.6 8.6 73 71-145 4-76 (386)
33 KOG0717 Molecular chaperone (D 99.8 1.1E-18 2.4E-23 155.9 7.2 72 69-141 5-76 (508)
34 PRK14290 chaperone protein Dna 99.7 1.8E-18 3.9E-23 154.4 7.5 73 72-145 3-75 (365)
35 PRK14300 chaperone protein Dna 99.7 2.3E-18 5E-23 154.1 7.3 71 72-145 3-73 (372)
36 TIGR02349 DnaJ_bact chaperone 99.7 2.1E-18 4.6E-23 153.3 7.0 70 73-145 1-70 (354)
37 KOG0715 Molecular chaperone (D 99.7 3.3E-18 7E-23 148.2 7.4 69 72-143 43-111 (288)
38 PRK14292 chaperone protein Dna 99.7 4.4E-18 9.5E-23 152.2 7.4 69 72-143 2-70 (371)
39 PRK14293 chaperone protein Dna 99.7 5.4E-18 1.2E-22 151.8 7.5 71 72-145 3-73 (374)
40 PRK05014 hscB co-chaperone Hsc 99.7 1.5E-17 3.3E-22 134.0 9.3 101 72-178 1-106 (171)
41 PTZ00341 Ring-infected erythro 99.7 9.8E-18 2.1E-22 161.0 8.3 73 70-145 571-643 (1136)
42 PRK10266 curved DNA-binding pr 99.7 1.1E-17 2.4E-22 146.1 7.6 67 72-141 4-70 (306)
43 PRK03578 hscB co-chaperone Hsc 99.7 7E-17 1.5E-21 130.6 11.0 102 71-178 5-111 (176)
44 smart00271 DnaJ DnaJ molecular 99.7 3.6E-17 7.8E-22 109.1 6.9 59 72-131 1-59 (60)
45 PRK01356 hscB co-chaperone Hsc 99.7 3.8E-17 8.3E-22 131.0 8.0 75 72-147 2-79 (166)
46 PRK00294 hscB co-chaperone Hsc 99.7 1.5E-16 3.3E-21 128.3 9.5 102 70-178 2-108 (173)
47 cd06257 DnaJ DnaJ domain or J- 99.7 1.1E-16 2.4E-21 104.8 7.0 55 73-129 1-55 (55)
48 TIGR03835 termin_org_DnaJ term 99.7 4.8E-16 1E-20 146.6 10.5 71 72-145 2-72 (871)
49 KOG0721 Molecular chaperone (D 99.6 4.9E-16 1.1E-20 127.4 7.4 72 69-142 96-167 (230)
50 COG2214 CbpA DnaJ-class molecu 99.6 7.3E-16 1.6E-20 125.3 7.8 70 70-140 4-73 (237)
51 PHA03102 Small T antigen; Revi 99.6 3.8E-16 8.2E-21 123.3 5.2 67 72-144 5-73 (153)
52 KOG0720 Molecular chaperone (D 99.6 1.2E-15 2.6E-20 136.6 6.9 111 66-192 229-339 (490)
53 KOG0624 dsRNA-activated protei 99.6 1.2E-15 2.5E-20 133.3 3.9 88 58-146 380-468 (504)
54 PRK01773 hscB co-chaperone Hsc 99.6 9.3E-15 2E-19 117.9 8.3 101 72-177 2-107 (173)
55 KOG0714 Molecular chaperone (D 99.4 7.6E-14 1.7E-18 118.5 5.0 74 71-145 2-75 (306)
56 TIGR00714 hscB Fe-S protein as 99.4 4.9E-13 1.1E-17 106.4 8.5 89 84-178 3-94 (157)
57 PHA02624 large T antigen; Prov 99.4 1.4E-13 3.1E-18 128.3 6.2 87 70-176 9-99 (647)
58 KOG0722 Molecular chaperone (D 99.4 2E-13 4.4E-18 114.5 4.6 69 70-141 31-99 (329)
59 PTZ00100 DnaJ chaperone protei 99.4 7.3E-13 1.6E-17 99.8 5.6 52 71-128 64-115 (116)
60 PRK09430 djlA Dna-J like membr 99.3 1.1E-12 2.3E-17 112.7 5.7 60 70-129 198-262 (267)
61 KOG0550 Molecular chaperone (D 99.3 7.4E-13 1.6E-17 117.8 4.6 72 66-138 367-438 (486)
62 COG5407 SEC63 Preprotein trans 99.3 4.9E-12 1.1E-16 113.4 5.8 72 70-141 96-170 (610)
63 KOG1150 Predicted molecular ch 99.2 1.1E-10 2.5E-15 94.9 9.2 68 70-138 51-118 (250)
64 COG5269 ZUO1 Ribosome-associat 99.0 4.6E-10 9.9E-15 95.3 6.3 75 66-140 37-114 (379)
65 KOG1789 Endocytosis protein RM 98.4 3.7E-07 8E-12 89.4 5.1 53 71-128 1280-1336(2235)
66 KOG0568 Molecular chaperone (D 98.3 6.9E-07 1.5E-11 74.6 5.0 56 71-129 46-102 (342)
67 KOG0723 Molecular chaperone (D 98.2 2.6E-06 5.7E-11 62.8 5.2 52 72-129 56-107 (112)
68 KOG3192 Mitochondrial J-type c 97.8 0.00016 3.4E-09 57.1 8.1 72 69-140 5-81 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.5 7E-05 1.5E-09 60.5 3.4 75 73-147 2-81 (174)
70 COG1076 DjlA DnaJ-domain-conta 96.9 0.00088 1.9E-08 54.1 3.8 56 72-127 113-173 (174)
71 KOG0431 Auxilin-like protein a 96.6 0.0033 7.1E-08 58.1 4.9 43 84-126 400-447 (453)
72 PF03656 Pam16: Pam16; InterP 95.3 0.034 7.4E-07 42.7 4.8 52 73-130 59-110 (127)
73 PF13446 RPT: A repeated domai 89.9 1.1 2.4E-05 29.6 5.3 27 72-98 5-31 (62)
74 KOG0724 Zuotin and related mol 84.5 1.1 2.3E-05 39.6 3.5 57 84-140 4-62 (335)
75 PF11833 DUF3353: Protein of u 81.1 3.3 7.1E-05 34.1 4.9 38 81-128 1-38 (194)
76 PF14687 DUF4460: Domain of un 74.7 7.3 0.00016 29.2 4.8 49 82-130 4-54 (112)
77 COG5552 Uncharacterized conser 60.7 43 0.00094 23.4 5.8 31 73-103 4-34 (88)
78 KOG3442 Uncharacterized conser 41.7 38 0.00082 26.0 3.4 36 73-108 60-95 (132)
79 PF07709 SRR: Seven Residue Re 41.4 18 0.0004 16.7 1.1 13 116-128 2-14 (14)
80 PRK14102 nifW nitrogenase stab 39.1 1.2E+02 0.0025 22.6 5.6 57 70-126 13-74 (105)
81 PF03206 NifW: Nitrogen fixati 33.0 1.6E+02 0.0035 21.7 5.6 56 70-126 13-73 (105)
82 PF12434 Malate_DH: Malate deh 29.4 65 0.0014 18.0 2.2 17 86-102 10-26 (28)
83 PF08447 PAS_3: PAS fold; Int 24.5 26 0.00057 23.5 0.1 30 71-104 5-35 (91)
84 PF10041 DUF2277: Uncharacteri 23.0 2.7E+02 0.0059 19.5 6.0 33 73-105 4-36 (78)
85 cd01388 SOX-TCF_HMG-box SOX-TC 21.1 2.4E+02 0.0051 18.6 4.4 41 91-138 14-54 (72)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.7e-25 Score=194.57 Aligned_cols=74 Identities=43% Similarity=0.778 Sum_probs=69.3
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
...|||+||||+++||.+|||+|||+||++||||+|+.. ++|.++|++|++||+||+||++|+.||+++..++.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 357999999999999999999999999999999999864 57889999999999999999999999999988775
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4e-24 Score=184.84 Aligned_cols=76 Identities=43% Similarity=0.706 Sum_probs=71.6
Q ss_pred CcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccc
Q 028571 69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (207)
Q Consensus 69 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (207)
...+|||+||||+++|+..|||+|||+||++||||||+++ +.|.+.|+.|+.||+||+||++|+.||.+|++|+..
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 3468999999999999999999999999999999999988 688999999999999999999999999999988773
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2e-21 Score=173.65 Aligned_cols=73 Identities=42% Similarity=0.698 Sum_probs=66.6
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++||.+|||+|||+||++||||+++.+ .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 36999999999999999999999999999999999754 35789999999999999999999999999876553
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.5e-21 Score=170.05 Aligned_cols=72 Identities=29% Similarity=0.601 Sum_probs=65.9
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+||++||||+++. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 4699999999999999999999999999999999864 35779999999999999999999999999876553
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.1e-21 Score=166.15 Aligned_cols=71 Identities=42% Similarity=0.725 Sum_probs=66.1
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (207)
...||+||||+++|+.+|||+|||+|+++||||||+. +.++|++|.+||+||+||++|..||+++..++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~ 73 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG 73 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence 5689999999999999999999999999999999986 4589999999999999999999999999887743
No 6
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-20 Score=166.19 Aligned_cols=79 Identities=42% Similarity=0.735 Sum_probs=72.8
Q ss_pred cCcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccc
Q 028571 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP-PDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (207)
Q Consensus 68 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (207)
+..+.+||.+|||+++||.+||++|||++++.|||||.. ++.++.|++.|+.|..||+||+||.+|++||.+|..|+..
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 345679999999999999999999999999999999986 5567889999999999999999999999999999999873
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.4e-20 Score=166.87 Aligned_cols=73 Identities=42% Similarity=0.699 Sum_probs=66.9
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 36999999999999999999999999999999998754 46789999999999999999999999999877654
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.4e-20 Score=166.84 Aligned_cols=70 Identities=43% Similarity=0.695 Sum_probs=64.8
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchh
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++.. +.|.++|++|++||+||+||.+|+.||.++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 46999999999999999999999999999999999754 46789999999999999999999999999753
No 9
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5e-20 Score=155.15 Aligned_cols=77 Identities=43% Similarity=0.723 Sum_probs=71.1
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccchh
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAF 148 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~ 148 (207)
...|+|+||||+++|+.++|||+||+|+++||||+++++ +++..+|++||.||+||+||.+|..||.+|..++....
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e 105 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAE 105 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHH
Confidence 378999999999999999999999999999999999886 57789999999999999999999999999988776544
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.80 E-value=6.2e-20 Score=166.26 Aligned_cols=69 Identities=36% Similarity=0.634 Sum_probs=63.4
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+||++||||+++. .++|++|++||+||+||.+|+.||.++..++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 5799999999999999999999999999999999853 27899999999999999999999999876543
No 11
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.6e-19 Score=149.17 Aligned_cols=93 Identities=30% Similarity=0.575 Sum_probs=80.1
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccchhh
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFS 149 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~ 149 (207)
...|+|+||||.++|+..+|++||++|++++|||+++.....+|+..|++|+.||.||+|.++|+.||..|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id------ 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID------ 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC------
Confidence 35599999999999999999999999999999999987778899999999999999999999999999988432
Q ss_pred hcccccCCccccchhHHHHHHHHHHH
Q 028571 150 ARRRQQNDVDFQVRSEWRNRWQSQLS 175 (207)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (207)
|..-.-..+|...|+..+.
T Consensus 86 -------d~~~d~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 86 -------DESGDIDEDWLEFWRAIYK 104 (264)
T ss_pred -------CccchhhhHHHHHHHHHHh
Confidence 2222334578888887775
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.5e-20 Score=162.84 Aligned_cols=74 Identities=43% Similarity=0.785 Sum_probs=66.6
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++... .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~ 76 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQ 76 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccch-hHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccc
Confidence 469999999999999999999999999999999986542 35789999999999999999999999999876543
No 13
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=162.40 Aligned_cols=72 Identities=40% Similarity=0.722 Sum_probs=65.7
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~ 74 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN 74 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence 3699999999999999999999999999999999864 35678999999999999999999999999876653
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.1e-19 Score=162.11 Aligned_cols=72 Identities=39% Similarity=0.605 Sum_probs=66.3
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 5999999999999999999999999999999998754 46778999999999999999999999999876653
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.5e-19 Score=161.42 Aligned_cols=73 Identities=42% Similarity=0.735 Sum_probs=67.0
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 46999999999999999999999999999999999754 45778999999999999999999999999987654
No 16
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.79 E-value=1.9e-19 Score=122.04 Aligned_cols=64 Identities=45% Similarity=0.827 Sum_probs=60.3
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYD 137 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD 137 (207)
|||+||||+++++.++|+++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987665 567899999999999999999999998
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.7e-19 Score=162.10 Aligned_cols=73 Identities=42% Similarity=0.768 Sum_probs=66.8
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 36999999999999999999999999999999999754 46779999999999999999999999999876654
No 18
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=162.45 Aligned_cols=72 Identities=38% Similarity=0.689 Sum_probs=65.9
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 4699999999999999999999999999999999864 35678999999999999999999999999876654
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.4e-19 Score=162.17 Aligned_cols=72 Identities=40% Similarity=0.692 Sum_probs=66.4
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..|.++|++|++||+||+||.+|+.||.++..|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 5699999999999999999999999999999999874 35779999999999999999999999999877653
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.4e-19 Score=162.34 Aligned_cols=72 Identities=43% Similarity=0.738 Sum_probs=66.1
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP---GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 36999999999999999999999999999999998753 5678999999999999999999999999987654
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.8e-19 Score=161.23 Aligned_cols=73 Identities=41% Similarity=0.689 Sum_probs=66.9
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 36999999999999999999999999999999999754 46778999999999999999999999999877654
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.7e-19 Score=161.77 Aligned_cols=72 Identities=36% Similarity=0.651 Sum_probs=66.5
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 6999999999999999999999999999999999754 46789999999999999999999999999877653
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=161.01 Aligned_cols=73 Identities=40% Similarity=0.713 Sum_probs=66.0
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHH----hchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDR----DLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~----~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||. ++..++.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~ 84 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR 84 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence 46999999999999999999999999999999998754 4578999999999999999999999998 7766553
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.4e-19 Score=160.88 Aligned_cols=72 Identities=39% Similarity=0.727 Sum_probs=65.8
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 73 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFS 73 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccc
Confidence 3699999999999999999999999999999999975 35668999999999999999999999999876654
No 25
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3e-19 Score=160.72 Aligned_cols=71 Identities=46% Similarity=0.746 Sum_probs=65.4
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (207)
.|||+||||+++|+.++||+|||+|+++||||+++.. ..|.++|++|++||+||+||.+|+.||.++..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 4899999999999999999999999999999999754 4677999999999999999999999999987654
No 26
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.3e-19 Score=159.75 Aligned_cols=71 Identities=39% Similarity=0.697 Sum_probs=65.6
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.++||+|||+|+++||||+++.. .|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE---GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 6999999999999999999999999999999998753 4678999999999999999999999999877654
No 27
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4e-19 Score=154.18 Aligned_cols=71 Identities=41% Similarity=0.711 Sum_probs=65.1
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (207)
..|||+||||+++|+.++||+|||+|+++||||+++. ..+.++|++|++||+||+||.+|+.||.++..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 3699999999999999999999999999999999864 3567899999999999999999999999987654
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4e-19 Score=160.18 Aligned_cols=72 Identities=40% Similarity=0.675 Sum_probs=66.3
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.++||+|||+|+++||||+++.. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 5999999999999999999999999999999999754 45779999999999999999999999999877654
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.2e-19 Score=157.68 Aligned_cols=73 Identities=42% Similarity=0.741 Sum_probs=66.5
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.++||+|||+|+++||||+++.. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 46999999999999999999999999999999998754 45779999999999999999999999999876654
No 30
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.1e-19 Score=158.10 Aligned_cols=68 Identities=43% Similarity=0.706 Sum_probs=63.5
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchh
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (207)
.|||+||||+++|+.++||+|||+|+++||||+++. .+|.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 589999999999999999999999999999999974 46779999999999999999999999998754
No 31
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-18 Score=150.54 Aligned_cols=75 Identities=43% Similarity=0.693 Sum_probs=69.8
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccch
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 147 (207)
..|||+||||..+++..+|++||+..+++||||||+++. .|.+.|+.|.+||+||+|+..|..||.++..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP--~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP--QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 679999999999999999999999999999999999884 488999999999999999999999999998776554
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.7e-18 Score=155.59 Aligned_cols=73 Identities=38% Similarity=0.716 Sum_probs=66.8
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~ 76 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG 76 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 46999999999999999999999999999999999754 46789999999999999999999999999876553
No 33
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-18 Score=155.88 Aligned_cols=72 Identities=43% Similarity=0.714 Sum_probs=66.6
Q ss_pred CcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 028571 69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (207)
Q Consensus 69 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (207)
...+.||+||||.++|+..+||++||+||++||||++++. .++|+++|+.|+.||+|||||..|+.||..-.
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 4567999999999999999999999999999999998654 47899999999999999999999999998665
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.8e-18 Score=154.43 Aligned_cols=73 Identities=36% Similarity=0.711 Sum_probs=66.5
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.+|||+|||+|+++||||+++.. ..+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~ 75 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFG 75 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccc
Confidence 5999999999999999999999999999999998654 236789999999999999999999999999876653
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.3e-18 Score=154.09 Aligned_cols=71 Identities=31% Similarity=0.641 Sum_probs=65.0
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK---DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 5999999999999999999999999999999998643 4668999999999999999999999999876654
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.74 E-value=2.1e-18 Score=153.33 Aligned_cols=70 Identities=43% Similarity=0.773 Sum_probs=64.3
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
|||+||||+++|+.++||+||++|+++||||+++. ..+.++|++|++||+||+||.+|+.||.++..++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 79999999999999999999999999999999973 35678999999999999999999999999876654
No 37
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.3e-18 Score=148.15 Aligned_cols=69 Identities=39% Similarity=0.658 Sum_probs=65.1
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG 143 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~ 143 (207)
.|||+||||+++|+..|||+||++|+++||||.+... .|.++|++|.+||+||+|+++|..||..+..+
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~---~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK---EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc---chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3999999999999999999999999999999999776 67799999999999999999999999998765
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.4e-18 Score=152.22 Aligned_cols=69 Identities=41% Similarity=0.687 Sum_probs=64.2
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG 143 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~ 143 (207)
.|||+||||+++|+.++||+||++|+++||||+++. ..|.++|++|++||+||+||.+|+.||.++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 589999999999999999999999999999999974 357799999999999999999999999998764
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.4e-18 Score=151.82 Aligned_cols=71 Identities=41% Similarity=0.730 Sum_probs=65.0
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP---GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---CHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 5999999999999999999999999999999998753 4668999999999999999999999999876553
No 40
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.73 E-value=1.5e-17 Score=133.97 Aligned_cols=101 Identities=22% Similarity=0.425 Sum_probs=75.1
Q ss_pred cchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccc
Q 028571 72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (207)
Q Consensus 72 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (207)
.|||+||||++. ++..+|+++|+++++++|||+.... ....+.+.|..||+||++|+||.+|+.|+..+. |...
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~-g~~~ 79 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH-GFDL 79 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc-CCcc
Confidence 489999999996 7889999999999999999997543 223467899999999999999999999998775 5544
Q ss_pred hhhhcccccCCccccchhHHHHHHHHHHHHHH
Q 028571 147 AFSARRRQQNDVDFQVRSEWRNRWQSQLSELK 178 (207)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 178 (207)
........+.++.|+. +.|++.++++.
T Consensus 80 ~~~~~~~~d~efLme~-----me~rE~le~~~ 106 (171)
T PRK05014 80 AHEQHTVRDTAFLMEQ-----MELREELEDIE 106 (171)
T ss_pred ccccCCcCCHHHHHHH-----HHHHHHHHhhc
Confidence 3222222222222322 57888877664
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=9.8e-18 Score=161.03 Aligned_cols=73 Identities=27% Similarity=0.515 Sum_probs=67.3
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
...+||+||||+++|+..+||+|||+||++||||+++.+ .|.++|+.|++||+||+||.+|+.||.+|..|+.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 457999999999999999999999999999999999764 4678999999999999999999999999987754
No 42
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.72 E-value=1.1e-17 Score=146.11 Aligned_cols=67 Identities=43% Similarity=0.693 Sum_probs=62.4
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (207)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~---~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP---DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999998643 567899999999999999999999999874
No 43
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.71 E-value=7e-17 Score=130.63 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=75.6
Q ss_pred ccchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDR---VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||+||||++. ++..+|+++|+++++++|||++.... +..+.+.+..||+||++|+||.+|+.|+..+. |++
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~-G~~ 83 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR-GVD 83 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc-CCC
Confidence 4799999999996 68899999999999999999975432 22356678999999999999999999998775 554
Q ss_pred chhhhcccccCCccccchhHHHHHHHHHHHHHH
Q 028571 146 LAFSARRRQQNDVDFQVRSEWRNRWQSQLSELK 178 (207)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 178 (207)
.........+.++.|+. +.|++.++++.
T Consensus 84 ~~~e~~~~~d~~fLme~-----mE~rE~lee~~ 111 (176)
T PRK03578 84 VQAENNTAMPPAFLMQQ-----MEWREAIEDAR 111 (176)
T ss_pred CccccCCCCCHHHHHHH-----HHHHHHHHHhh
Confidence 43222222222333333 67888887764
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.70 E-value=3.6e-17 Score=109.12 Aligned_cols=59 Identities=51% Similarity=0.925 Sum_probs=54.0
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChh
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG 131 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~ 131 (207)
.|||+||||+++++.++||++|+++++.+|||+++.. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998753 3567899999999999999985
No 45
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=3.8e-17 Score=131.03 Aligned_cols=75 Identities=31% Similarity=0.462 Sum_probs=63.7
Q ss_pred cchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccch
Q 028571 72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD-RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147 (207)
Q Consensus 72 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~-~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 147 (207)
.|||+||||++. ++..+|+++|+++++++|||+.... ....+.+.+..|++||+||+||.+|+.|+..+. |+...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~-g~~~~ 79 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ-NINLN 79 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc-CCCCC
Confidence 489999999997 7899999999999999999998543 223455678999999999999999999998875 55543
No 46
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.68 E-value=1.5e-16 Score=128.25 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=76.8
Q ss_pred cccchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcc
Q 028571 70 KELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDR---VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (207)
...|||++|||++. .+..+|+++|+++++++|||++.... +..+.+.+..||+||+||+||.+|+.|+..+. |.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~-g~ 80 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS-GH 80 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc-CC
Confidence 35799999999998 67899999999999999999975432 34467889999999999999999999998875 55
Q ss_pred cchhhhcccccCCccccchhHHHHHHHHHHHHHH
Q 028571 145 HLAFSARRRQQNDVDFQVRSEWRNRWQSQLSELK 178 (207)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 178 (207)
..... ....+..+.|+. +.|+++++++.
T Consensus 81 ~~~~~-~~~~d~~fLme~-----me~rE~le~~~ 108 (173)
T PRK00294 81 EVPLE-VTVHDPEFLLQQ-----MQLREELEELQ 108 (173)
T ss_pred CCCcc-cCCCCHHHHHHH-----HHHHHHHHhhc
Confidence 44321 111122222222 68888887764
No 47
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.68 E-value=1.1e-16 Score=104.79 Aligned_cols=55 Identities=51% Similarity=0.915 Sum_probs=51.2
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCC
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd 129 (207)
|||+||||+++++.++||++|+++++++|||+++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999998764 4677999999999999986
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.65 E-value=4.8e-16 Score=146.62 Aligned_cols=71 Identities=35% Similarity=0.626 Sum_probs=65.0
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
.|||+||||+++|+.++||++||+|+++||||+++. ..+.++|+.|++||++|+||.+|+.||.++..|..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 589999999999999999999999999999999876 35668999999999999999999999999876543
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.9e-16 Score=127.37 Aligned_cols=72 Identities=32% Similarity=0.586 Sum_probs=65.2
Q ss_pred CcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchh
Q 028571 69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (207)
Q Consensus 69 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (207)
....|+||||||+++++..|||+|||+|+++|||||++.. .+..+.|..|.+||+.|+|+..|..|..+|..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 3567999999999999999999999999999999999775 34458899999999999999999999999864
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.3e-16 Score=125.31 Aligned_cols=70 Identities=47% Similarity=0.788 Sum_probs=64.4
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhc
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (207)
...+||+||||+++|+..+|+++|++++++||||+++.... .+.+.|+.|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 35789999999999999999999999999999999987743 57899999999999999999999999863
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.62 E-value=3.8e-16 Score=123.27 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=60.9
Q ss_pred cchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcc
Q 028571 72 LSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (207)
Q Consensus 72 ~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (207)
..+|+||||+++| |.++||+|||++++++|||+++.+ ++|++|++||++|+|+.+|..||.++....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~------e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE------EKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh------HHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 4689999999999 999999999999999999997543 689999999999999999999999886543
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-15 Score=136.57 Aligned_cols=111 Identities=26% Similarity=0.333 Sum_probs=88.8
Q ss_pred cccCcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 66 VDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 66 ~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..+...+|+|.+|||+.+++.++||+.||++|..+|||||.. +.|.+.|+.|+.||++|+|+++|..||..+.....
T Consensus 229 ~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene 305 (490)
T KOG0720|consen 229 SRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENE 305 (490)
T ss_pred hhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 334457899999999999999999999999999999999984 46779999999999999999999999998754322
Q ss_pred chhhhcccccCCccccchhHHHHHHHHHHHHHHHhhcccccCCCchH
Q 028571 146 LAFSARRRQQNDVDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISW 192 (207)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~~~~~~~~~~~~ 192 (207)
.... -...| ..-+.+++|..+.+++..|++-+-|
T Consensus 306 ~~~~------------~~~~~-~~~~~~~eEA~ntI~CskC~n~H~r 339 (490)
T KOG0720|consen 306 LHRQ------------VISSL-NDLQKAVEEARNTIFCSKCGNTHFR 339 (490)
T ss_pred HHHH------------HHHHH-HHHHHHHHHHHhheehhhhcCccee
Confidence 1000 00112 2556788999999999999877754
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=1.2e-15 Score=133.33 Aligned_cols=88 Identities=31% Similarity=0.508 Sum_probs=73.7
Q ss_pred CCcccccccccCcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHHHcCChhHHHHH
Q 028571 58 GTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR-VEEYTQRFIRVQEAYETLSDPGLRALY 136 (207)
Q Consensus 58 ~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~a~~~f~~I~~Ay~vLsdp~~R~~Y 136 (207)
+...+......+..+|||+||||.++|+..||.+|||+++.+||||...+.. +..|..+|..|..|-+||+||++|+.|
T Consensus 380 Gle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqF 459 (504)
T KOG0624|consen 380 GLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQF 459 (504)
T ss_pred HHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhc
Confidence 3444445556678899999999999999999999999999999999875543 677899999999999999999999999
Q ss_pred HHhchhcccc
Q 028571 137 DRDLSMGLHL 146 (207)
Q Consensus 137 D~~~~~~~~~ 146 (207)
|. |...++.
T Consensus 460 Dn-GeDPLD~ 468 (504)
T KOG0624|consen 460 DN-GEDPLDP 468 (504)
T ss_pred cC-CCCCCCh
Confidence 98 3333433
No 54
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.56 E-value=9.3e-15 Score=117.89 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=77.4
Q ss_pred cchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccc
Q 028571 72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (207)
Q Consensus 72 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (207)
.|||++|||++. .+..++++.|+++.+.+|||+.... .+..+.+....||+||.+|+||.+|+.|-..+..|++.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~ 81 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ 81 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence 589999999998 8999999999999999999986433 23456788999999999999999999998887756553
Q ss_pred hhhhcccccCCccccchhHHHHHHHHHHHHH
Q 028571 147 AFSARRRQQNDVDFQVRSEWRNRWQSQLSEL 177 (207)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 177 (207)
........+.++.|+. +.|++.++++
T Consensus 82 ~~e~~~~~d~~fLme~-----ME~rE~lee~ 107 (173)
T PRK01773 82 NLEEKSTQDMAFLMQQ-----MEWREQLEEI 107 (173)
T ss_pred CcccccCCCHHHHHHH-----HHHHHHHHhh
Confidence 3222222233333333 6788888775
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.6e-14 Score=118.54 Aligned_cols=74 Identities=43% Similarity=0.711 Sum_probs=67.3
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhccc
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (207)
..|||.||||.++|+..+|++||+++++.+|||+++.. ...+..+|++|.+||++|+|+.+|..||.++..++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 36899999999999999999999999999999998877 667767999999999999999999999999975544
No 56
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.43 E-value=4.9e-13 Score=106.38 Aligned_cols=89 Identities=25% Similarity=0.395 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccchhhhcccccCCccc
Q 028571 84 VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDVDF 160 (207)
Q Consensus 84 as~~eIk~ayr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
.+..+|+++|+++++++|||+.... .+..+.+.+..||+||++|+||.+|+.|+..+. |+..........+..+.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~-g~~~~~e~~~~~d~~fLm 81 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH-GIDLASEQHSVRDTAFLM 81 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc-CCCCCcccCCCCCHHHHH
Confidence 5678999999999999999986433 234477899999999999999999999999886 665433222222223333
Q ss_pred cchhHHHHHHHHHHHHHH
Q 028571 161 QVRSEWRNRWQSQLSELK 178 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~e~~ 178 (207)
.. +.|++.++++.
T Consensus 82 e~-----Me~rE~lee~~ 94 (157)
T TIGR00714 82 EQ-----LELREELDEIE 94 (157)
T ss_pred HH-----HHHHHHHHHHH
Confidence 32 67777776653
No 57
>PHA02624 large T antigen; Provisional
Probab=99.43 E-value=1.4e-13 Score=128.35 Aligned_cols=87 Identities=23% Similarity=0.457 Sum_probs=69.5
Q ss_pred cccchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHH--Hhchhccc
Q 028571 70 KELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYD--RDLSMGLH 145 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD--~~~~~~~~ 145 (207)
+..++|+||||+++| +.++||+|||+++++||||+++. .++|++|++||++|+|+.++..|. ..-..++
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------eekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v- 81 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEI- 81 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------HHHHHHHHHHHHHHhcHHHhhhcccccccccCC-
Confidence 456899999999999 99999999999999999999753 268999999999999999999994 2100011
Q ss_pred chhhhcccccCCccccchhHHHHHHHHHHHH
Q 028571 146 LAFSARRRQQNDVDFQVRSEWRNRWQSQLSE 176 (207)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 176 (207)
+.. +...|..+|+..+..
T Consensus 82 ------------~~~-~~~~w~~ww~~f~~k 99 (647)
T PHA02624 82 ------------PTY-GTPEWEQWWEEFNEK 99 (647)
T ss_pred ------------CCC-ccccHHHHHHHhhhh
Confidence 111 446899999988754
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2e-13 Score=114.50 Aligned_cols=69 Identities=36% Similarity=0.613 Sum_probs=63.1
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (207)
...|.|+||||.+.++..+|.+|||+|+++||||++++. ++.+.|..|..||++|.|.+.|..||-.+.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~---e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP---ESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc---hhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 467999999999999999999999999999999999776 334899999999999999999999997664
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.37 E-value=7.3e-13 Score=99.78 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=46.8
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcC
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs 128 (207)
..++|+||||+++++.++|+++|++|++++|||+.+.. ..|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~------~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGST------YIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999996432 57899999999984
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.34 E-value=1.1e-12 Score=112.72 Aligned_cols=60 Identities=30% Similarity=0.444 Sum_probs=52.7
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHHHcCC
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP-----DRVEEYTQRFIRVQEAYETLSD 129 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~a~~~f~~I~~Ay~vLsd 129 (207)
...++|+||||++++|.++||++||+|+++||||+... ...+.+.++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999632 2335688999999999999974
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.4e-13 Score=117.84 Aligned_cols=72 Identities=39% Similarity=0.584 Sum_probs=66.5
Q ss_pred cccCcccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028571 66 VDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDR 138 (207)
Q Consensus 66 ~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~ 138 (207)
...++.+|||.||||.++++..+||++|+++++.+|||++... +.++..+|++|-+||.+|+||.+|..||.
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 4566789999999999999999999999999999999998665 46788999999999999999999999996
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.27 E-value=4.9e-12 Score=113.44 Aligned_cols=72 Identities=31% Similarity=0.589 Sum_probs=66.5
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP---DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (207)
..-|+||||||..+++..+||++||+|+.+|||||.+. ...++..+.+++|++||..|+|...|..|-.+|.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 35699999999999999999999999999999999866 5667888999999999999999999999999874
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-10 Score=94.89 Aligned_cols=68 Identities=28% Similarity=0.429 Sum_probs=60.6
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028571 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDR 138 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~ 138 (207)
-+.|+|+||.|.+..+.++||+.||+|+..+|||||+++. +.|...|..|.+||..|-|+..|..-+.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~-~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA-ERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH-HHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4789999999999999999999999999999999998763 5678899999999999999986665443
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.6e-10 Score=95.28 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=62.5
Q ss_pred cccCcccchhhhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHHhc
Q 028571 66 VDESKELSFYDLLGIPES---VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (207)
Q Consensus 66 ~~~~~~~~~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (207)
...+...|+|.+|||+.- +++.+|.++.++.+.+||||+..........+.|+.|+.||+||+|+.+|..||..-
T Consensus 37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 356788999999999864 889999999999999999999622222233478999999999999999999999743
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.7e-07 Score=89.36 Aligned_cols=53 Identities=34% Similarity=0.525 Sum_probs=45.9
Q ss_pred ccchhhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcC
Q 028571 71 ELSFYDLLGIPES----VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128 (207)
Q Consensus 71 ~~~~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs 128 (207)
.-+-|+||.|+-+ -..+.||++|++|+.+|||||||+. .++|..+++||+.|.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG-----RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG-----REMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHHH
Confidence 4467999999865 3458899999999999999999754 478999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.9e-07 Score=74.64 Aligned_cols=56 Identities=27% Similarity=0.635 Sum_probs=48.9
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHH-HcCC
Q 028571 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE-TLSD 129 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~-vLsd 129 (207)
-..||.||||..+|+.++++.+|..|++++|||..... ...+.|.+|.+||. ||..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~---adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE---ADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999987654 23478999999998 7754
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.6e-06 Score=62.82 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=45.3
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCC
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd 129 (207)
..--.||||.++++.+.||.|+|+.....|||+.+.+. .-..||+|+++|..
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPY------lAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPY------LASKINEAKDLLEG 107 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHH------HHHHHHHHHHHHhc
Confidence 34557999999999999999999999999999998773 35689999999864
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00016 Score=57.08 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=56.7
Q ss_pred CcccchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHcCChhHHHHHHHhc
Q 028571 69 SKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (207)
Q Consensus 69 ~~~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (207)
....+||.++|.... ..+..++.-|.-..+++|||+.... ....|.+....|++||.+|.||..|+.|-..+
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 346789999986544 6677777789999999999984211 11356788999999999999999999997655
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=7e-05 Score=60.45 Aligned_cols=75 Identities=36% Similarity=0.521 Sum_probs=58.5
Q ss_pred chhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHcCChhHHHHHHHhchhcccch
Q 028571 73 SFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147 (207)
Q Consensus 73 ~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 147 (207)
+++.++|+++.+ ..+.++..|+.+.+.+|||+.... ....+.+.+..++.||.+|.||..|+.|-..+..|....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~~~ 81 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLDHA 81 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccch
Confidence 456666776653 456789999999999999986433 233467899999999999999999999988877665443
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00088 Score=54.07 Aligned_cols=56 Identities=27% Similarity=0.487 Sum_probs=47.7
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC-----CCchHHHHHHHHHHHHHHHHHc
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVS-----PPDRVEEYTQRFIRVQEAYETL 127 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~-----~~~~~~~a~~~f~~I~~Ay~vL 127 (207)
.+.|.+||+...+...+|+++|+++...+|||+. +..-...+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999974 2223356778999999999754
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.56 E-value=0.0033 Score=58.07 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHHH
Q 028571 84 VSLVEIKQAYKQMARKYHPDVSPPD-----RVEEYTQRFIRVQEAYET 126 (207)
Q Consensus 84 as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~a~~~f~~I~~Ay~v 126 (207)
.+.++||++||+.++.+||||.... .+-.|++.|..+++|+..
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999997543 123355566666666654
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.30 E-value=0.034 Score=42.74 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=37.7
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCCh
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp 130 (207)
.-..||||++..+.++|.+.|.+|-...+|++.+... .-..|..|.+.|..+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY------LQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY------LQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH------HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH------HHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999887652 344688888887543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=89.94 E-value=1.1 Score=29.58 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.5
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHH
Q 028571 72 LSFYDLLGIPESVSLVEIKQAYKQMAR 98 (207)
Q Consensus 72 ~~~Y~iLgv~~~as~~eIk~ayr~l~~ 98 (207)
.+-|++|||+++.+.+.|..+|.....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999999887
No 74
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=1.1 Score=39.57 Aligned_cols=57 Identities=26% Similarity=0.247 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHHcCChhHHHHHHHhc
Q 028571 84 VSLVEIKQAYKQMARKYHPDVSPP--DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (207)
Q Consensus 84 as~~eIk~ayr~l~~~~HPDk~~~--~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (207)
++..+|..+|+..++.+||++... .......+.|+.|.+||.||++...|..+|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 567889999999999999998642 111123467999999999999866655665543
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=81.07 E-value=3.3 Score=34.09 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcC
Q 028571 81 PESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128 (207)
Q Consensus 81 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs 128 (207)
+++|+.+||.+|+.++..+|--|. +.-.+|..||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~----------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE----------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHH
Confidence 468999999999999999993331 34667999998764
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=74.72 E-value=7.3 Score=29.19 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHHHHcCCh
Q 028571 82 ESVSLVEIKQAYKQMARKYHPDVSPPD--RVEEYTQRFIRVQEAYETLSDP 130 (207)
Q Consensus 82 ~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~~a~~~f~~I~~Ay~vLsdp 130 (207)
+..+..+++.+.|.+-+++|||..... .+..-.+-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 345678899999999999999964322 2222334566666666666554
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=60.69 E-value=43 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=25.9
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPD 103 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD 103 (207)
|.-+++|+.+-|+..||+.|-++.++++.=-
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 4567899999999999999998888887433
No 78
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.68 E-value=38 Score=25.99 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.0
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPD 108 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~ 108 (207)
.--.||+|....+.++|.+.|..|-....+.|.+.-
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 346899999999999999999999999877776654
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=41.44 E-value=18 Score=16.73 Aligned_cols=13 Identities=54% Similarity=0.910 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcC
Q 028571 116 RFIRVQEAYETLS 128 (207)
Q Consensus 116 ~f~~I~~Ay~vLs 128 (207)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3677888887764
No 80
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=39.07 E-value=1.2e+02 Score=22.61 Aligned_cols=57 Identities=12% Similarity=0.324 Sum_probs=33.0
Q ss_pred cccchhhhcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 028571 70 KELSFYDLLGIPESV-----SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYET 126 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~a-----s~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~v 126 (207)
...+|++.|||+-+- +.=-|-+.|.......+.+....+..+.....-..+.+||+.
T Consensus 13 sAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~d 74 (105)
T PRK14102 13 DAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQV 74 (105)
T ss_pred cHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 356899999998763 334477788877776554432222222222333455666664
No 81
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=33.03 E-value=1.6e+02 Score=21.75 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=34.1
Q ss_pred cccchhhhcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 028571 70 KELSFYDLLGIPESV-----SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYET 126 (207)
Q Consensus 70 ~~~~~Y~iLgv~~~a-----s~~eIk~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~v 126 (207)
...+|++.|||+-+. ..=-|-+.|.......++... ....+.....-..+.+||+.
T Consensus 13 sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~-~~e~~~~~~~R~~L~~AY~d 73 (105)
T PF03206_consen 13 SAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPG-LSEEEDWAAYRRALERAYQD 73 (105)
T ss_pred CHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 356899999998763 344588888888888866421 22212222333345666653
No 82
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=29.42 E-value=65 Score=17.98 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q 028571 86 LVEIKQAYKQMARKYHP 102 (207)
Q Consensus 86 ~~eIk~ayr~l~~~~HP 102 (207)
.++.+.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999983
No 83
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=24.54 E-value=26 Score=23.46 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=20.6
Q ss_pred ccchhhhcCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 028571 71 ELSFYDLLGIPESVSLVEI-KQAYKQMARKYHPDV 104 (207)
Q Consensus 71 ~~~~Y~iLgv~~~as~~eI-k~ayr~l~~~~HPDk 104 (207)
..+++++||+++ +++ ......+....|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 357899999864 566 566677888899984
No 84
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.00 E-value=2.7e+02 Score=19.46 Aligned_cols=33 Identities=21% Similarity=0.078 Sum_probs=25.9
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 028571 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVS 105 (207)
Q Consensus 73 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~ 105 (207)
|--.+.|+.+-+|.+||..|-.+.+++..=-..
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~ 36 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRK 36 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 334567888999999999999999998754433
No 85
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.15 E-value=2.4e+02 Score=18.60 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028571 91 QAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDR 138 (207)
Q Consensus 91 ~ayr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~ 138 (207)
+..+...+.-||+... .+..+.|.+.|..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~~~-------~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKEN-------RAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455666677887532 2567889999999998887665554
Done!