BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028572
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V64|A Chain A, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|C Chain C, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|F Chain F, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 213
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 133/190 (70%)
Query: 11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D + ++ N+
Sbjct: 19 ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 78
Query: 71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
QL +WL +Q++V+VI + + EVLERW F IE D + REKS K I EI++
Sbjct: 79 QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 138
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N + V+L SF T I
Sbjct: 139 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 198
Query: 191 HKVDTLVSYK 200
HKV+++V+YK
Sbjct: 199 HKVNSMVAYK 208
>pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Undergoes Similar
Major Conformational Changes Upon Binding To Either Mad1
Or Cdc20
Length = 197
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 133/190 (70%)
Query: 11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D + ++ N+
Sbjct: 3 ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 62
Query: 71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
QL +WL +Q++V+VI + + EVLERW F IE D + REKS K I EI++
Sbjct: 63 QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 122
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N + V+L SF T I
Sbjct: 123 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 182
Query: 191 HKVDTLVSYK 200
HKV+++V+YK
Sbjct: 183 HKVNSMVAYK 192
>pdb|3GMH|A Chain A, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|B Chain B, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|C Chain C, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|D Chain D, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|E Chain E, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|F Chain F, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|G Chain G, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|H Chain H, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|I Chain I, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|J Chain J, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|K Chain K, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|L Chain L, Crystal Structure Of The Mad2 Dimer
Length = 207
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 133/190 (70%)
Query: 11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D + ++ N+
Sbjct: 13 ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 72
Query: 71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
QL +WL +Q++V+VI + + EVLERW F IE D + REKS K I EI++
Sbjct: 73 QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 132
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N + V+L SF T I
Sbjct: 133 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 192
Query: 191 HKVDTLVSYK 200
HKV+++V+YK
Sbjct: 193 HKVNSMVAYK 202
>pdb|2VFX|A Chain A, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|B Chain B, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|C Chain C, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|D Chain D, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|E Chain E, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|F Chain F, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|G Chain G, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|H Chain H, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|I Chain I, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|J Chain J, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|K Chain K, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|L Chain L, Structure Of The Symmetric Mad2 Dimer
Length = 206
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 137/200 (68%)
Query: 1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
MA + + IT RGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D
Sbjct: 2 MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61
Query: 61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
+ ++ N+ QL +WL +Q++V+VI + + EVLERW F IE+D + REKS
Sbjct: 62 LIKYLNNVVEQLKDWLYKSSVQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKS 121
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
K I EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N +
Sbjct: 122 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
V+L SF T IHKV+++V+YK
Sbjct: 182 VRLRSFTTTIHKVNSMVAYK 201
>pdb|1GO4|A Chain A, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|B Chain B, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|C Chain C, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|D Chain D, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 205
Score = 199 bits (507), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 136/200 (68%)
Query: 1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
MA + + ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D
Sbjct: 1 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60
Query: 61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
+ ++ N+ QL +WL +Q++V+VI + + EVLERW F IE D + REKS
Sbjct: 61 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
K I EI++++ QI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N +
Sbjct: 121 QKAIQDEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
V+L SF T IHKV+++V+YK
Sbjct: 181 VRLRSFTTTIHKVNSMVAYK 200
>pdb|1S2H|A Chain A, The Mad2 Spindle Checkpoint Protein Possesses Two Distinct
Natively Folded States
Length = 206
Score = 199 bits (507), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 136/200 (68%)
Query: 1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
MA + + ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D
Sbjct: 2 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61
Query: 61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
+ ++ N+ QL +WL +Q++V+VI + + EVLERW F IE D + REKS
Sbjct: 62 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 121
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
K I EI++++ QI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N +
Sbjct: 122 QKAIQDEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
V+L SF T IHKV+++V+YK
Sbjct: 182 VRLRSFTTTIHKVNSMVAYK 201
>pdb|2QYF|A Chain A, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding
Peptide Ternary Complex
pdb|2QYF|C Chain C, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding
Peptide Ternary Complex
Length = 206
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 135/200 (67%)
Query: 1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
MA + + IT RGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D
Sbjct: 2 MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61
Query: 61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
+ ++ N+ QL +WL +Q++V+VI + + EVLERW F IE D + REKS
Sbjct: 62 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 121
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
K I EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N +
Sbjct: 122 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
V+L SF T IHKV++ V+YK
Sbjct: 182 VRLRSFTTTIHKVNSXVAYK 201
>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|E Chain E, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|H Chain H, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 207
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 134/190 (70%), Gaps = 6/190 (3%)
Query: 11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D + ++ N+
Sbjct: 19 ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 78
Query: 71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
QL +WL +Q++V+VI + + EVLERW F IE D KG S EKS K I EI++
Sbjct: 79 QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECD-----KG-SGEKSQKAIQDEIRS 132
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N + V+L SF T I
Sbjct: 133 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 192
Query: 191 HKVDTLVSYK 200
HKV+++V+YK
Sbjct: 193 HKVNSMVAYK 202
>pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assembly Checkpoint
Protein Human Mad2
Length = 187
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/185 (49%), Positives = 128/185 (69%)
Query: 11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
ITLRGSA IV+EFF + NSILY RG+YP E+F +V+KYGL +L+T D + ++ N+
Sbjct: 3 ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 62
Query: 71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
QL +WL +Q++V+VI + + EVLERW F IE D + REKS K I EI++
Sbjct: 63 QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 122
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
++RQI +++T+LP L+ +C FD+L YTDKD+ VP W ES P+ I N + V+L SF T I
Sbjct: 123 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 182
Query: 191 HKVDT 195
HKV++
Sbjct: 183 HKVNS 187
>pdb|4AEZ|B Chain B, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|E Chain E, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|H Chain H, Crystal Structure Of Mitotic Checkpoint Complex
Length = 203
Score = 189 bits (480), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 14 RGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLS 73
+GS+ +VSEFF YA NSIL+ RG+YP E F V+KYGL ML++ DE VK++I + +QL
Sbjct: 13 KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLH 72
Query: 74 EWLEAGKLQRVVLVIMSKATKEVLERWNFSIE-TDNEVVEKGVSREKSDKEIMREIQAIM 132
+W+ A K+Q+++LVI SK + E LERW F++E D + + ++ + + +EIQA++
Sbjct: 73 KWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALI 132
Query: 133 RQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHK 192
QI +++T+LP L+E C F+VL Y DKD VP W++SDP+++ + + V+L SF T +HK
Sbjct: 133 AQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHK 192
Query: 193 VDTLVSYK 200
+D V+Y+
Sbjct: 193 IDCQVAYR 200
>pdb|4FJO|C Chain C, Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Complex
Length = 210
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 17 AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
A ++SEF A + ILY R VYP F K KKY +P+ ++ + +I + + L
Sbjct: 16 ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75
Query: 77 EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSD---KEIMREIQAIMR 133
E +++VV+VI+ K + V E++ F E+ + + SD + + + A +
Sbjct: 76 EKNDVEKVVVVILDKEHRPV-EKFVF------EITQPPLLSINSDSLLSHVEQLLAAFIL 128
Query: 134 QIASSITYLPCLDETCVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMVK 182
+I+ L C F VL +T + V F WI +D + + +P+++
Sbjct: 129 KISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIP 188
Query: 183 LHSFDTKIHKVDTLV---SYKN 201
L + + I K+ V ++KN
Sbjct: 189 LKTMTSDILKMQLYVEERAHKN 210
>pdb|3ABD|A Chain A, Structure Of Human Rev7 In Complex With A Human Rev3
Fragment In A Monoclinic Crystal
pdb|3ABD|B Chain B, Structure Of Human Rev7 In Complex With A Human Rev3
Fragment In A Monoclinic Crystal
pdb|3ABE|C Chain C, Structure Of Human Rev7 In Complex With A Human Rev3
Fragment In A Tetragonal Crystal
pdb|3VU7|C Chain C, Crystal Structure Of Rev1-rev7-rev3 Ternary Complex
Length = 227
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 17 AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
A ++ EF A + ILY R VYP F K KKY +P+ ++ + +I + + L
Sbjct: 32 ADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 91
Query: 77 EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIA 136
E +++VV+VI+ K + V E++ F I + S ++++ A + +I+
Sbjct: 92 EKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLLSISSDSLLSHVEQLL---AAFILKIS 147
Query: 137 SSITYLPCLDETCVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMVKLHS 185
L C F VL +T + V F WI +D + + +P+++ L +
Sbjct: 148 VCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKT 207
Query: 186 FDTKIHKVDTLV 197
+ I K+ V
Sbjct: 208 MTSDILKMQLYV 219
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 26.6 bits (57), Expect = 9.9, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 33 YNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKA 92
Y+ + EE + K+ Y ++ F+ + L++ + ++ +
Sbjct: 663 YSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARXLND----------LTFLLDEG 712
Query: 93 TKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASS 138
+ E N E DN +RE+ DKE+ + + RQ SS
Sbjct: 713 LSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSS 758
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,696,507
Number of Sequences: 62578
Number of extensions: 205744
Number of successful extensions: 504
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 17
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)