Query 028572
Match_columns 207
No_of_seqs 130 out of 352
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aez_B MAD2, mitotic spindle c 100.0 1.7E-73 5.9E-78 479.2 20.0 201 1-202 1-202 (203)
2 2vfx_A Mitotic spindle assembl 100.0 6.3E-72 2.2E-76 471.0 21.2 205 1-205 2-206 (206)
3 3abd_A Mitotic spindle assembl 100.0 1.7E-59 5.8E-64 400.4 18.2 190 7-200 22-222 (227)
4 2qyf_B MAD2L1-binding protein; 93.8 2.4 8.1E-05 35.8 14.5 130 10-151 29-178 (240)
5 1knx_A Probable HPR(Ser) kinas 42.8 7.2 0.00025 33.9 0.9 55 15-69 71-132 (312)
6 1ko7_A HPR kinase/phosphatase; 35.8 15 0.0005 31.9 1.8 57 18-79 71-128 (314)
7 3pbt_A Penicillin-binding prot 30.2 92 0.0031 28.7 6.3 48 47-97 172-219 (538)
8 2qas_A SSPB, hypothetical prot 30.0 90 0.0031 24.5 5.3 42 120-161 16-57 (157)
9 3ue3_A Septum formation, penic 29.0 98 0.0034 28.6 6.3 48 47-97 199-246 (554)
10 3equ_A PBP-2, penicillin-bindi 27.8 1E+02 0.0035 28.2 6.2 47 48-97 191-237 (542)
11 3l15_A Transcriptional enhance 27.3 53 0.0018 27.4 3.7 51 59-109 161-219 (231)
12 2ioj_A Hypothetical protein AF 27.1 12 0.00041 27.8 -0.2 43 18-60 64-108 (139)
13 3vsk_A Penicillin-binding prot 26.2 86 0.0029 29.2 5.4 49 49-97 267-318 (646)
14 1ug8_A Poly(A)-specific ribonu 25.7 82 0.0028 22.3 4.0 23 58-80 6-28 (87)
15 3fwm_A Penicillin-binding prot 25.6 1.4E+02 0.0048 28.8 6.9 50 48-97 380-432 (751)
16 1qme_A Penicillin-binding prot 25.4 1.2E+02 0.004 28.6 6.3 47 48-97 208-254 (702)
17 2nys_A AGR_C_3712P; SSPB, stri 24.7 80 0.0027 25.3 4.2 41 121-161 9-49 (176)
18 2y2m_A PBP1B, penicillin-bindi 22.7 96 0.0033 28.2 4.9 51 47-97 87-138 (494)
19 2wad_A Penicillin-binding prot 21.7 1.7E+02 0.0059 27.4 6.6 49 50-98 305-357 (680)
20 3un7_A PBPA, penicillin-bindin 21.0 1.4E+02 0.0047 26.7 5.5 44 49-97 101-144 (462)
No 1
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-73 Score=479.19 Aligned_cols=201 Identities=44% Similarity=0.811 Sum_probs=175.4
Q ss_pred CccccccccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCc
Q 028572 1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGK 80 (207)
Q Consensus 1 ma~~~~~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~ 80 (207)
|++ +++++.||||||+++|+|||++|||+|||+|||||+++|+++|+||+||++||||+|++||++++.++++||.+|+
T Consensus 1 ~~~-~~~~~~itlkgS~~iv~eFl~~aInsILY~RgIYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~wL~~g~ 79 (203)
T 4aez_B 1 MSS-VPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKK 79 (203)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCc-ccccccccHHHHHHHHHHHHHHHHHHHHhccccCChHHchHhhhcCccceeecCHHHHHHHHHHHHHHHHHHHhCC
Confidence 554 6678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHH-HHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecC
Q 028572 81 LQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKE-IMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDK 159 (207)
Q Consensus 81 v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~-i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~ 159 (207)
|+||+++|+++++++++|||+||++..+...+++...++++++ +++||||+|+||++++++||+||++|||+|++||++
T Consensus 80 v~klvlvI~~~~t~~~lEr~~Fdv~~~~~~~~~d~~~~k~~~e~iq~eira~lrqItasvt~Lp~L~~~ctF~vlvyt~~ 159 (203)
T 4aez_B 80 IQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADK 159 (203)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEEEEECC---------CHHHHHHHHHHHHHHHHHHHHGGGTSCCCCSCEEEEEEEEEET
T ss_pred ceEEEEEEEcCCCCceEEEEEEeccccCccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEEeCC
Confidence 9999999999999999999999999976543322223466777 999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCcccccCCceeeeeeeecCceeeeeEEEEecC
Q 028572 160 DVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKND 202 (207)
Q Consensus 160 ~~~~p~~Wi~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y~~~ 202 (207)
++++|.+|++|||+.|.|+++||||||||++|||+++|+||.+
T Consensus 160 da~vp~~W~~sd~~~i~~~~~v~lrsfsT~~hkv~~~v~yk~~ 202 (203)
T 4aez_B 160 DSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKIDCQVAYRVN 202 (203)
T ss_dssp TCCCCTTEEECCCCCCSSCEEEEEEEEECSSEEEEEEEEECC-
T ss_pred CCCCCCccccCCCeeccCccEEeeeeEecCCeeeeeEEEecCC
Confidence 9999999999999999999999999999999999999999974
No 2
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=100.00 E-value=6.3e-72 Score=470.96 Aligned_cols=205 Identities=47% Similarity=0.823 Sum_probs=194.3
Q ss_pred CccccccccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCc
Q 028572 1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGK 80 (207)
Q Consensus 1 ma~~~~~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~ 80 (207)
||+++.+++.||++||+++|+|||++|||+|||+|||||+++|+++|+||+||++||||+|++||+++++++++||.+|+
T Consensus 2 ~~~~~~~~~~itlk~s~~iv~efl~~ain~ILY~RgiYP~e~F~~~k~y~l~v~~sr~p~l~~YI~~~l~~l~~~L~~g~ 81 (206)
T 2vfx_A 2 MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKSS 81 (206)
T ss_dssp EEEEECCCCSBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccccccceeeHHHHHHHHHHHHHHHHHHHHHhccCCChHHhHHHHHcCceeeEecCHHHHHHHHHHHHHHHHHHHhCc
Confidence 88877889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCC
Q 028572 81 LQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKD 160 (207)
Q Consensus 81 v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~ 160 (207)
++||+|+|+++++++++|||+||++.++...+.+...++++.++++||||+|+||++++++||+||++|||+|++||+++
T Consensus 82 v~klvlvI~~~~~~~~lEr~~Fd~~~~~~~~~~~~~~~~~~~ei~~eira~l~qi~~s~~~Lp~L~~~ctF~i~v~t~~~ 161 (206)
T 2vfx_A 82 VQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKD 161 (206)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEEEEECTTC---CCCBSCCHHHHHHHHHHHHHHHHHHHTTSCCCCSCEEEEEEEEECTT
T ss_pred eeEEEEEEEeCCCCceEEEEEEEeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEEEcCC
Confidence 99999999999999999999999999876544334456899999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCcccccCCceeeeeeeecCceeeeeEEEEecCccc
Q 028572 161 VAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWD 205 (207)
Q Consensus 161 ~~~p~~Wi~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y~~~~~~ 205 (207)
+..|..|+++||+.|.|++.||||||||++|||+++|+||.++||
T Consensus 162 ~~~P~~W~~sd~~~i~~~~~v~lrs~sT~~h~v~~~V~y~~~~~~ 206 (206)
T 2vfx_A 162 LVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND 206 (206)
T ss_dssp SCCCTTCCCCCCCCCCSEEEEECCCEECSSEEEEEEEEEECCCCC
T ss_pred CCCCCCcccCcccccCCCcEEeeeEEecCCeEEEEEEEEecCCCC
Confidence 999999999999999999999999999999999999999998876
No 3
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=100.00 E-value=1.7e-59 Score=400.38 Aligned_cols=190 Identities=25% Similarity=0.411 Sum_probs=164.5
Q ss_pred cccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEE
Q 028572 7 AKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVL 86 (207)
Q Consensus 7 ~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~l 86 (207)
.++....++++++|+|||++|||+|||+|||||+++|+++|+||+||++||||+|++||++++.++++||.+|+|+||+|
T Consensus 22 ~~~~~~~~~~a~iv~eFlevainsILY~RgVYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~klvl 101 (227)
T 3abd_A 22 RQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVV 101 (227)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhccccCChHHhhHHHhcCCceEEecCHHHHHHHHHHHHHHHHHHHhCceeEEEE
Confidence 44445556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCCCC----
Q 028572 87 VIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVA---- 162 (207)
Q Consensus 87 vI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~~~---- 162 (207)
+|+++++ +++|||+||++.++.... ..++++.+++++|||+|+||++++++||+||++|||+|++||++++.
T Consensus 102 vI~~~~~-e~lER~~Fdi~~~~~~~~---~~~~~~~eie~eira~l~qi~~s~~~Lp~L~~~ctF~ilv~t~~~~~~~~~ 177 (227)
T 3abd_A 102 VILDKEH-RPVEKFVFEITQPPLLSI---SSDSLLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNME 177 (227)
T ss_dssp EEECTTS-CEEEEEEEEEECCC---------CCHHHHHHHHHHHHHHHHHTGGGTSCCCCTTCEEEEEEEEC--------
T ss_pred EEEcCCC-cEEEEEEEEeeccCcccc---cCcccHHHHHHHHHHHHHHHHHHHhhCCCCCCCcEEEEEEEecCccccccc
Confidence 9999987 899999999998864321 12346789999999999999999999999999999999999998754
Q ss_pred ---C--CCccccCCccc--ccCCceeeeeeeecCceeeeeEEEEe
Q 028572 163 ---V--PFTWIESDPKL--IANPQMVKLHSFDTKIHKVDTLVSYK 200 (207)
Q Consensus 163 ---~--p~~Wi~sd~~~--i~n~~~v~lrsfsT~~h~v~~~V~y~ 200 (207)
. +++|+++|++. +.+++.+|||||+|++|+|+++|+-.
T Consensus 178 ~~~~~~~~pWi~ad~~~~~~~~~~~vplrs~~t~~~~~~~~VEe~ 222 (227)
T 3abd_A 178 KIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEER 222 (227)
T ss_dssp ------CCCEEECCHHHHCCSSEEEEEEEEEECSSCEEEEEEEEE
T ss_pred cccCcCCCCceECCccccccCCceEEeeEEEecCcEEEEEEEEcc
Confidence 2 35699999986 78899999999999999999999754
No 4
>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint, cell cycle, cell division, mitosis, nucleus, phosphorylation; 2.30A {Homo sapiens}
Probab=93.84 E-value=2.4 Score=35.80 Aligned_cols=130 Identities=13% Similarity=0.221 Sum_probs=70.6
Q ss_pred ceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhh-hcCCc-----------------cccccCHhHHHHHHHHHHH
Q 028572 10 IITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVK-KYGLP-----------------MLLTEDEGVKSFIANLTAQ 71 (207)
Q Consensus 10 ~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r-~y~l~-----------------v~~sr~p~l~~YI~~~l~~ 71 (207)
.+|.++.+.++.|++. .|||+|+=-|-- |+.-+ .|.-+ .-.-+...+.+=+++++..
T Consensus 29 ~~t~~~~~~~v~eiik----~lLYqR~QIP~~-y~~L~~~~~k~~~~~~d~~~~k~~~~~~~~~KK~~k~i~~l~~L~~~ 103 (240)
T 2qyf_B 29 PVSQEGCCQFTCELLK----HIMYQRQQLPLP-YEQLKHFYRKPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSH 103 (240)
T ss_dssp CC-CHHHHHHHHHHHH----HHHHHTTSSSSC-HHHHTC---------------------------CCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH----HHheecccCCch-HHHHHHHHhhhccccchhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 4556666666666665 588999866543 22221 12111 1111112445557777777
Q ss_pred HHHHHHcCccceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCC--CCCCCc
Q 028572 72 LSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLP--CLDETC 149 (207)
Q Consensus 72 v~~~L~~g~v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp--~L~~~c 149 (207)
+...+....+.+++ +|+....-.+-|-|.+++....... .....+. ..=+|.+||+|..++.+-. -.|.--
T Consensus 104 L~~~f~~~~v~~V~-illGsS~~sPKE~Y~i~~~~~~~~~---~~~~ls~---~~~lRkl~RaLi~~d~~s~~~~~~lt~ 176 (240)
T 2qyf_B 104 LEDFFARTLVPRVL-ILLGGNALSPKEFYELDLSLLAPYS---VDQSLST---AACLRRLFRAIFMADAFSELQAPPLMG 176 (240)
T ss_dssp HHHHHHHSCCCEEE-EEESSCSSSCSEEEEEECTTSCC------CCCSCH---HHHHHHHHHHHHHTTTTCCCSCCCCCE
T ss_pred HHHHHhcCCCcEEE-EEecCCCCCcceEEEEEcccccCcc---cccccch---HHHHHHHHHHHHhcCCccccccCCCee
Confidence 88777777788754 4554555568899999997643211 1111221 1227888888888866633 234444
Q ss_pred eE
Q 028572 150 VF 151 (207)
Q Consensus 150 tF 151 (207)
||
T Consensus 177 tf 178 (240)
T 2qyf_B 177 TV 178 (240)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 5
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=42.79 E-value=7.2 Score=33.90 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhhhhhhhccCCCCCCcc-hhhhhcCCccccccCHh------HHHHHHHHH
Q 028572 15 GSAAIVSEFFGYAANSILYNRGVYPEESF-VKVKKYGLPMLLTEDEG------VKSFIANLT 69 (207)
Q Consensus 15 ~s~~~v~efLe~aih~ILy~RgiYP~~~F-~~~r~y~l~v~~sr~p~------l~~YI~~~l 69 (207)
.....+.+++.+-+-.|++.||.=|++.+ +..+++|+|++.|..+. |..||++.+
T Consensus 71 ~r~~~~~~l~~~~iP~IIvtrg~~pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~l 132 (312)
T 1knx_A 71 EQQQILHNLLKLNPPAIILTKSFTDPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQF 132 (312)
T ss_dssp HHTTTHHHHHTTCCSCEEEETTTCCCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHh
Confidence 33456788888999999999999877655 78999999999887764 445554444
No 6
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=35.75 E-value=15 Score=31.94 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCC-cchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcC
Q 028572 18 AIVSEFFGYAANSILYNRGVYPEE-SFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAG 79 (207)
Q Consensus 18 ~~v~efLe~aih~ILy~RgiYP~~-~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g 79 (207)
..+..||...+-.|++.||.=|++ ..+..+++|+||+.|..+. .+.+..+..||.+.
T Consensus 71 ~rler~l~~~~P~IIltrg~~~peelie~A~~~~IPVL~T~~~t-----s~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 71 GRMRKLCRPETPAIIVTRDLEPPEELIEAAKEHETPLITSKIAT-----TQLMSRLTTFLEHE 128 (314)
T ss_dssp THHHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHCCCeEEEECCch-----hHHHHHHHHHHHHh
Confidence 456677778888999999976554 5677999999999888765 44556666776553
No 7
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex; HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A* 3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 4fsf_A* 3oc2_A 3ocl_A* 3ocn_A*
Probab=30.21 E-value=92 Score=28.66 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=39.3
Q ss_pred hhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEEEEeCCCccee
Q 028572 47 KKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 47 r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lvI~~~~~~e~l 97 (207)
..-|..|+.+-|+.|++++.++|....+ +..-.+-.+++.|+.|++++
T Consensus 172 ~~~G~~i~lTID~~lQ~~ae~~l~~~~~---~~~~~~ga~Vvmdp~TGeIL 219 (538)
T 3pbt_A 172 AKPGKTLALSIDLRLQYLAHRELRNALL---ENGAKAGSLVIMDVKTGEIL 219 (538)
T ss_dssp CBCCCCEEBSCCHHHHHHHHHHHHHHHH---HTTCSEEEEEEEETTTCBEE
T ss_pred CCCCCeEEEEeCHHHHHHHHHHHHHHHh---hcCCceEEEEEEECCCCcEE
Confidence 3468899999999999999998876443 33457899999999999876
No 8
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=30.03 E-value=90 Score=24.50 Aligned_cols=42 Identities=7% Similarity=-0.017 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCCC
Q 028572 120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDV 161 (207)
Q Consensus 120 ~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~~ 161 (207)
.+.-+++++|+++|+.-..++.-..||.+.-|-|.--|+...
T Consensus 16 Y~~l~~~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~~pG 57 (157)
T 2qas_A 16 YEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAG 57 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTCSCTTCCEEEEEETTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCCCC
Confidence 345578899999999988888877799999999999898653
No 9
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan synthetase; transpeptidase, transferase; 2.30A {Acinetobacter}
Probab=29.03 E-value=98 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=39.5
Q ss_pred hhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEEEEeCCCccee
Q 028572 47 KKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 47 r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lvI~~~~~~e~l 97 (207)
..-|..|+.+-|+.|++++.++|....+ +..-.+-.+++.|+.|++++
T Consensus 199 ~~~G~~i~lTID~~lQ~~ae~~l~~~~~---~~~~~~ga~Vvmdp~TGeIL 246 (554)
T 3ue3_A 199 VESGENITLSIDSRLQYIMYRELTAAGV---ANNARSATAIAVDVKTGEIL 246 (554)
T ss_dssp CBCCCCEEBSCCHHHHHHHHHHHHHHHH---HTTCSEEEEEEEETTTCBEE
T ss_pred CCCCCeEEEeeCHHHHHHHHHHHHhhhh---hcCCceEEEEEEECCCCeEE
Confidence 3568899999999999999999876543 33457899999999999876
No 10
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell DIV cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=27.81 E-value=1e+02 Score=28.24 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=38.7
Q ss_pred hcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEEEEeCCCccee
Q 028572 48 KYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 48 ~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lvI~~~~~~e~l 97 (207)
.-|..|+.+-|+.|++++.++|....+. .....-++++.|+.|++++
T Consensus 191 ~~G~~i~lTiD~~lQ~~ae~~l~~~~~~---~~~~~ga~Vv~d~~TGeIl 237 (542)
T 3equ_A 191 QNGKDIILSLDQRIQTLAYEELNKAVEY---HQAKAGTVVVLDARTGEIL 237 (542)
T ss_dssp BCCCCEEBSCCHHHHHHHHHHHHHHHHH---TTCSEEEEEEEETTTCBEE
T ss_pred CCCCeEEEEECHHHHHHHHHHHHhhHhh---cCCceEEEEEEECCCCeEE
Confidence 4588899999999999999988875443 3456889999999999876
No 11
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding, nucleus, transcriptio regulation; HET: MSE GOL; 2.00A {Homo sapiens}
Probab=27.29 E-value=53 Score=27.40 Aligned_cols=51 Identities=18% Similarity=0.391 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHHHHHHH----HHcCccceEEE--EEEeCCCcceeE--EEeeecccccc
Q 028572 59 EGVKSFIANLTAQLSEW----LEAGKLQRVVL--VIMSKATKEVLE--RWNFSIETDNE 109 (207)
Q Consensus 59 p~l~~YI~~~l~~v~~~----L~~g~v~kl~l--vI~~~~~~e~lE--r~~Fdi~~~~~ 109 (207)
-.+|+|+.++++.++.+ +.+.-++.+.+ ++.|.+|+|+|= .|+|+++...+
T Consensus 161 spmCeYmi~FI~kLk~LP~~~mMNsVLEnftilqvVtn~~TqE~Llcia~vFEVS~~e~ 219 (231)
T 3l15_A 161 SPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSER 219 (231)
T ss_dssp EECCHHHHHHHHHHTTCSCHHHHHHHHTTEEEEEEEEETTTCCEEEEEEEEEEECCSSS
T ss_pred CchhHHHHHHHHHHhcCCcHHHHHHHHhhceeEEEEEcCCCceEeEEEEEEEEEecCCC
Confidence 34789999999888752 34445666666 999999999985 58888877543
No 12
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=27.12 E-value=12 Score=27.84 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=35.3
Q ss_pred HHHHHHHH-HhhhhhhhccCCCCCCcc-hhhhhcCCccccccCHh
Q 028572 18 AIVSEFFG-YAANSILYNRGVYPEESF-VKVKKYGLPMLLTEDEG 60 (207)
Q Consensus 18 ~~v~efLe-~aih~ILy~RgiYP~~~F-~~~r~y~l~v~~sr~p~ 60 (207)
+++...++ ..+..|+..+|..|++.. +..+++|+||..+.+..
T Consensus 64 ~~~l~a~~~~~~~~iIlt~g~~~~~~i~~~A~~~~ipvl~t~~~T 108 (139)
T 2ioj_A 64 DLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDT 108 (139)
T ss_dssp HHHHHHTTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCH
T ss_pred HHHHHHHhCCCCcEEEEcCCCCCCHHHHHHHHHCCCeEEEECCCH
Confidence 55556676 778899999999998876 55788999999988776
No 13
>3vsk_A Penicillin-binding protein 3; penicillin-binding domain, transpeptidase; 2.30A {Staphylococcus aureus} PDB: 3vsl_A*
Probab=26.20 E-value=86 Score=29.20 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=39.2
Q ss_pred cCCccccccCHhHHHHHHHHHHHHHHHHHcC---ccceEEEEEEeCCCccee
Q 028572 49 YGLPMLLTEDEGVKSFIANLTAQLSEWLEAG---KLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 49 y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g---~v~kl~lvI~~~~~~e~l 97 (207)
-|..|+.+-|+.|+.++.++|....+.+... ....-++++.|+.|++++
T Consensus 267 ~G~~i~lTID~~lQ~~ae~~l~~~~~~~~a~~~~~~~~ga~Vv~dp~TGeIL 318 (646)
T 3vsk_A 267 RGQDLKLTIDIDLQKEVEALLDKQIKKLRSQGAKDMDNAMMVVQNPKNGDIL 318 (646)
T ss_dssp CCCCEEESCCHHHHHHHHHHHHHHHHHSSSSSCSSCCEEEEEEECTTTCBBC
T ss_pred CCCeEEEEEchHHhhHHHHHHHhhhhhhhcccccCCceEEEEEEeCCCCcEE
Confidence 4778899999999999999998866655332 245788999999999875
No 14
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=25.65 E-value=82 Score=22.30 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.0
Q ss_pred CHhHHHHHHHHHHHHHHHHHcCc
Q 028572 58 DEGVKSFIANLTAQLSEWLEAGK 80 (207)
Q Consensus 58 ~p~l~~YI~~~l~~v~~~L~~g~ 80 (207)
-|+-+.||+++++.|..||.+..
T Consensus 6 p~e~k~~id~i~~kIe~FL~s~~ 28 (87)
T 1ug8_A 6 SGDQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999997764
No 15
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Probab=25.58 E-value=1.4e+02 Score=28.84 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=39.7
Q ss_pred hcCCccccccCHhHHHHHHHHHHHHHHHHHc---CccceEEEEEEeCCCccee
Q 028572 48 KYGLPMLLTEDEGVKSFIANLTAQLSEWLEA---GKLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 48 ~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~---g~v~kl~lvI~~~~~~e~l 97 (207)
.-|+.|+-+-|+.++++..+++..-...+.. ..-..-++++.|+.|++++
T Consensus 380 ~~G~~I~TTLD~~lQ~~ae~al~~~~~~~~~~~~~~~~~gA~Vv~Dp~TGeIl 432 (751)
T 3fwm_A 380 LSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVR 432 (751)
T ss_dssp SSSCEEEECCCHHHHHHHHHHHHHHHHHHHHHHTCSCCEEEEEEEETTTCBEE
T ss_pred CCCCeEEEeeCHHHHHHHHHHHHHHHHHhhhcccCccceEEEEEEECCCCcEE
Confidence 3488999999999999999999886555532 2334788999999999765
No 16
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=25.43 E-value=1.2e+02 Score=28.63 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=38.2
Q ss_pred hcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEEEEeCCCccee
Q 028572 48 KYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 48 ~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lvI~~~~~~e~l 97 (207)
.-|..|+.+-|+.|++++.++|....+.. .-...++++.|+.|++++
T Consensus 208 ~~G~~I~lTiD~~lQ~~ae~~l~~~~~~~---~~~~ga~Vv~dp~TGeIl 254 (702)
T 1qme_A 208 MDGKDVYTTISSPLQSFMETQMDAFQEKV---KGKYMTATLVSAKTGEIL 254 (702)
T ss_dssp BCCCEEEESCCHHHHHHHHHHHHHHHHHH---CCSEEEEEEEETTTCBEE
T ss_pred CCCCeeEEEECHHHHHHHHHHHHHHHHhc---CCceEEEEEEECCCCcEE
Confidence 45888999999999999999997754433 335789999999999876
No 17
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2
Probab=24.74 E-value=80 Score=25.27 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCCC
Q 028572 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDV 161 (207)
Q Consensus 121 ~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~~ 161 (207)
..-+++++|+++|+.-..++.-..||.+.-|-|.--|+.+.
T Consensus 9 ~~l~~~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~~pG 49 (176)
T 2nys_A 9 DILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPG 49 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCCCC
Confidence 45568899999999888888877799999999999898654
No 18
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell WALL, peptidoglycan, inhibitor; HET: E08; 1.62A {Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A* 2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A* 2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Probab=22.69 E-value=96 Score=28.21 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=38.3
Q ss_pred hhcCCccccccCHhHHHHHHHHHHHHHHHHHcC-ccceEEEEEEeCCCccee
Q 028572 47 KKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAG-KLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 47 r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g-~v~kl~lvI~~~~~~e~l 97 (207)
..-|..|+-+-|+.+++.+.+++......+..+ .-....+++.|..+++++
T Consensus 87 ~~~G~~I~tTiD~~lQ~~~e~~~~~~~~~~~~~~~~~~~a~Vv~D~~TG~Il 138 (494)
T 2y2m_A 87 ENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRVEVGNVLMDNQTGAIL 138 (494)
T ss_dssp HHSCCEEEESCCHHHHHHHHHHHHHHGGGGCCSSSCCEEEEEEEETTTCBEE
T ss_pred HcCCCceEeccCHHHHHHHHHHHHhhhhcccccCccceEEEEEEECCCCeEE
Confidence 446899999999999999999887754333222 123577899999999876
No 19
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme antibiotic resistance, cell shape, peptidoglycan; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=21.66 E-value=1.7e+02 Score=27.44 Aligned_cols=49 Identities=27% Similarity=0.241 Sum_probs=38.2
Q ss_pred CCccccccCHhHHHHHHHHHHHHH-HHHHcC--ccc-eEEEEEEeCCCcceeE
Q 028572 50 GLPMLLTEDEGVKSFIANLTAQLS-EWLEAG--KLQ-RVVLVIMSKATKEVLE 98 (207)
Q Consensus 50 ~l~v~~sr~p~l~~YI~~~l~~v~-~~L~~g--~v~-kl~lvI~~~~~~e~lE 98 (207)
|..|+.+-|+.|+++..++|..-. .....+ .+. ...+++.|+.|++++=
T Consensus 305 G~~i~lTID~~lQ~~ae~~l~~~~~~~~~~~~~~~~~~ga~Vv~dp~TGeIlA 357 (680)
T 2wad_A 305 GKNIKLTIDLAFQDSVDALLKSYFNSELGNGGAKYSEGVYAVALNPQTGAVLS 357 (680)
T ss_dssp CCEEEESCCHHHHHHHHHHHHHHHHHHHHHSTTTTCCEEEEEEECTTTCBEEE
T ss_pred CCceEEeECHHHHHHHHHHHHHHHhhhccccccccCCcEEEEEEECCCCcEEE
Confidence 788999999999999999998754 344322 233 7889999999998763
No 20
>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A
Probab=20.96 E-value=1.4e+02 Score=26.67 Aligned_cols=44 Identities=14% Similarity=-0.035 Sum_probs=35.0
Q ss_pred cCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEEEEeCCCccee
Q 028572 49 YGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVL 97 (207)
Q Consensus 49 y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lvI~~~~~~e~l 97 (207)
-|..|+.+-|+.|+++..++|.+- + -.-.+-++|+.|+.|+++|
T Consensus 101 ~G~~i~lTID~~lQ~~ae~~l~~~---~--~~~~~ga~Vvmdp~TGeIL 144 (462)
T 3un7_A 101 RGGNVDTTINPRIQQAGWDAMQQG---C--YGPCKGAVVALEPSTGKIL 144 (462)
T ss_dssp BCCEEEECCCHHHHHHHHHHHHHT---T--SSCCCEEEEEECTTTCBEE
T ss_pred CCCeEEEeeCHHHHHHHHHHHHhh---c--cCCCeEEEEEEECCCCcEE
Confidence 488899999999999999888652 1 1235678899999999886
Done!