BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028574
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 111/168 (66%), Positives = 131/168 (77%)
Query: 38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
+KV+FD+ I GK +GRIVM L+ VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRI
Sbjct: 4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
IP+FM+Q ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ T
Sbjct: 64 IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
V T WLDG+HVVFG+V+ G+DVV VE+ G Q+G P ++AD G+L
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 124/170 (72%), Gaps = 3/170 (1%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
KV+FD+ I K AGRIVM L+ VPKTAENFRALCTGEKG G+SGKPLHYK S FHR+I
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLK---HTGPGLLSMANAGPDTNGSQFFI 155
P+FM+Q ESIYG F DE+F K HTG G LSMANAGP+TNGSQFFI
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T T WLDG+HVVFG+V+ G+DVV KVE G +G +S++VV+D GE+
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEV 178
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/164 (64%), Positives = 114/164 (69%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
VYFD+ I PAGRI M LF VP TAENFRALCTGEKG+G+SGKPL Y GS FHRIIP
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM+Q ESIYG KF DENF H P LLSMANAGP+TNGSQFFITTV
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
WLDG+HVVFGKVL GM+VV +E G QNG P V + SG
Sbjct: 142 CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
VY DV+ GKP GR+V+ L VPKTAENFRALCTGEKG G YKGSTFHR+IP
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
SFM Q +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFG V+ GMDVV K+E+ G ++G K+V+ D G+L
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
VY DV+ GKP GR+V+ L VPKTAENFRALCTGEKG G YKGSTFHR+IP
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
SFM Q +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFG V+ GMDVV K+E+ G ++G K+V+ D G+L
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
VY DV+ GKP GR+V+ L VPKTAENFRALCTGEKG G YKGSTFHR+IP
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
SFM Q +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+
Sbjct: 58 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFG V+ GMDVV K+E+ G ++G K+V+ D G+L
Sbjct: 118 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 163
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
VY DV+ GKP GR+V+ L VPKTAENFRALCTGEKG G YKGSTFHR+IP
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 59
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
SFM Q +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+
Sbjct: 60 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 119
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFG V+ GMDVV K+E+ G ++G K+V+ D G+L
Sbjct: 120 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 165
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 120/168 (71%), Gaps = 7/168 (4%)
Query: 38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
++VYFDVE G+P GR+V L+ VPKTAENFRALCTGEKG G Y GS FHR+
Sbjct: 2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRV 54
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
IP FMLQ +SIYG KFPDENFK H PGLLSMANAGP+TNGSQFFITT
Sbjct: 55 IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
V WLDG+HVVFG+V+ G D+V KVE+ G +G K+++VVA SGEL
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
KV+FD+ I AGRI+ LF P+T ENFRALCTGEK IG GK LHYK S FHRII
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
P FM Q ESIYG F DENF +KH PGLLSMANAGP+TN SQFFIT V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
WLDG+HVVFGKV+ GM+VV ++E EG ++G K VV+ D GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
+VY D++I KPAGRI M L VP TAENFR LCT EKG G +KGS+FHRII
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 57
Query: 99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
P FM Q +SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T
Sbjct: 58 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
T WLDG+HVVFG+V G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 118 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
+VY D++I KPAGRI M L VP TAENFR LCT EKG G +KGS+FHRII
Sbjct: 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 65
Query: 99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
P FM Q +SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T
Sbjct: 66 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
T WLDG+HVVFG+V G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 126 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
KV+FD+ I AGRI+ LF P+T ENFRALCTGEK IG GK LHYK S FHRII
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
P FM Q ESIYG F DENF +KH PGLLSMANAGP+TN SQF IT V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
WLDG+HVVFGKV+ GM+VV ++E EG ++G K VV+ D GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 199 bits (507), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 199 bits (507), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 199 bits (507), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 25 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 77
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 78 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 137
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 138 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 199 bits (506), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 199 bits (506), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 199 bits (506), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 199 bits (506), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 58 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 118 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 14 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 66
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 67 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 126
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 127 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+L+MANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 115/166 (69%), Gaps = 7/166 (4%)
Query: 38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
+ V+FD+ G P G I LF VPKTA NFRALCTGEKG G Y GS FHR+
Sbjct: 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRV 54
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
IP FMLQ +SIYG KF DENF+LKH PGLLSMANAGP+TNGSQFFITT
Sbjct: 55 IPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITT 114
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
V TSWLDG+HVVFG+V+ GM+VV +EAEG +G P+S++ +A G
Sbjct: 115 VVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 10 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 62
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 63 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 122
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 123 TKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 122/176 (69%), Gaps = 12/176 (6%)
Query: 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
++T KVYFD+ I + GR+V+GLFGK VPKT +NF AL TGEKG G YK S F
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKF 62
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
HR+I FM+Q +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 63 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 122
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE---AEGRQNGTPKSKVVVADSGELPL 207
ITTV T+WLDG+HVVFGKVL GM+VV KVE +GR P V +AD G++ +
Sbjct: 123 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDK--PLKDVTIADCGKIEV 176
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FH+IIP
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHKIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 59 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V +E G +NG K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 122/176 (69%), Gaps = 12/176 (6%)
Query: 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
++T KVYFD+ I + GR+V+GLFGK VPKT +NF AL TGEKG G YK S F
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKF 62
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
HR+I FM+Q +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 63 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 122
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE---AEGRQNGTPKSKVVVADSGELPL 207
ITTV T+WLDG+HVVFGKVL GM+VV KVE +GR P V +AD G++ +
Sbjct: 123 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDK--PLKDVTIADCGKIEV 176
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 58 GFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV GM++V ++ G +NG K+ +AD G+L
Sbjct: 118 TEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 125/182 (68%), Gaps = 10/182 (5%)
Query: 29 SDQNLK--EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKP 86
SD+ K ++T KVYFD+ I + GR++ GLFGK VPKT +NF AL TGEKG G
Sbjct: 5 SDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG----- 59
Query: 87 LHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGP 146
YK S FHR+I FM+Q +SIYGE+FPDENFKLKH GPG +SMANAG
Sbjct: 60 --YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGK 117
Query: 147 DTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGEL 205
DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VV KVE+ + P V++AD G++
Sbjct: 118 DTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
Query: 206 PL 207
+
Sbjct: 178 EV 179
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM Q +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T
Sbjct: 58 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFG V GM++V +E G +NG K+ +AD G+L
Sbjct: 118 TKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 121/174 (69%), Gaps = 8/174 (4%)
Query: 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
++T KVYFD+ I + GR++ GLFGK VPKT +NF AL TGEKG G YK S F
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKF 55
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
HR+I FM+Q +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 56 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 115
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGELPL 207
ITTV T+WLDG+HVVFGKVL GM+VV KVE+ + P V++AD G++ +
Sbjct: 116 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEV 169
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 196 bits (499), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 118/174 (67%), Gaps = 8/174 (4%)
Query: 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
++T++VYFD+EI GKP GRIV+GLFGK VPKTA NF L KG G Y GS F
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF 56
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
HR+I FM+Q SIYGEKF DENFKLKH G G LSMANAG DTNGSQFF
Sbjct: 57 HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGELPL 207
ITTV T WLDGRHVVFGK+L GMDVV K+E + G PK V++A SG + +
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/166 (57%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
+VY D++I KPAGRI L VP TAENFR LCT EKG G +KGS+FHRII
Sbjct: 14 QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHRII 66
Query: 99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
P F Q +SIYG+KF DENF LKHTGPGLLS AN+GP+TNGSQFF+T
Sbjct: 67 PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
T WLDG+HVVFG+V G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 127 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/168 (59%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRI 97
+V+FDV+I G+ GRIV+ LF VPKTAENFRALCTGEKGIG +GKPLH+KG FHRI
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
I FM+Q ESIYGEKF DENF KH GLLSMANAG +TNGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
V T LDG+HVVFG+V+ GM V +E + P V+A+ GEL
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/166 (57%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FD+ + G+P GR+ LF VPKTAENFRAL TGEKG G YKGS FHRIIP
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
F Q +SIYGEKF DENF LKHTGPG+LS ANAGP+TNGSQFFI T
Sbjct: 58 GFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
T WLDG+HVVFGKV G ++V E G +NG K+ +AD G+L
Sbjct: 118 TEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+F++ I KP GRIV L+ +AVPKTA+NFR L TG+ G G YK S FHR+IP
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FMLQ +SIYGEKF DENF++KHT PGLLSMANAG +TNGSQFFITTV
Sbjct: 59 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
TSWLDG+HVVFG+V+ G+D+V KVE +G +G + + + D G +
Sbjct: 119 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 164
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+F++ I KP GRIV L+ +AVPKTA+NFR L TG+ G G YK S FHR+IP
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FMLQ +SIYGEKF DENF++KHT PGLLSMANAG +TNGSQFFITTV
Sbjct: 58 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
TSWLDG+HVVFG+V+ G+D+V KVE +G +G + + + D G +
Sbjct: 118 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 163
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 115/173 (66%), Gaps = 8/173 (4%)
Query: 36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
+T+KV+FDV I K GRIV+GLFG VPKT ENF AL TGEKG G YKGS FH
Sbjct: 6 VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFH 58
Query: 96 RIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
R+I FM+Q SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFI
Sbjct: 59 RVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 118
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGELPL 207
T +WLDG+HVVFGKVL GM VV+ +E + + P + + +SG++ +
Sbjct: 119 TLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 186 bits (471), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 115/173 (66%), Gaps = 8/173 (4%)
Query: 36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
+T KV+FDV I K GRIV+GLFGK VPKT ENF AL TGEKG G YKGS FH
Sbjct: 14 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFH 66
Query: 96 RIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
R+I FM+Q SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFI
Sbjct: 67 RVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 126
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGELPL 207
T +WLDG+HVVFGKV+ GM VV+ +E + + P + + +SG++ +
Sbjct: 127 TLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 118/182 (64%), Gaps = 11/182 (6%)
Query: 24 IQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS 83
++ KK +NL +V+FD+ I AGRIVM L VP+TAENFRALCTGE+G G
Sbjct: 1 MRTKKQKRNLP----RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-- 54
Query: 84 GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMAN 143
Y FHR+IP FM Q +SIYG KF DENF+L+H G G+LSMAN
Sbjct: 55 -----YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMAN 109
Query: 144 AGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
+GP+TNGSQFFI T WLDG+HVVFG+V+ G +VV K+E+ G ++G K V+++ G
Sbjct: 110 SGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCG 169
Query: 204 EL 205
EL
Sbjct: 170 EL 171
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Query: 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
E+T KVYFDV I +P GRI +GLFGK P T ENFR LCTGE G G YK S F
Sbjct: 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
HR+I +FM+Q +SIYGEKF DEN +KH G LSMANAGP+TNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
ITT T WLDGRHVVFGKVL GMDVV ++E + + P V + SGEL
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 111/172 (64%), Gaps = 9/172 (5%)
Query: 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
E+T KVYFDV I +P GRI +GLFGK P T ENFR LCTGE G G YK S F
Sbjct: 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
HR+I +FM+Q +SIYGEKF DEN +KH G LSMANAGP+TNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
ITT T WLDG HVVFGKVL GMDVV ++E + + P V + SGEL
Sbjct: 121 ITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 114/171 (66%), Gaps = 9/171 (5%)
Query: 36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
+T+KVYFD+ I +P GR+V+GLFG VPKT ENF+ L +GE G G YKGS FH
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFH 56
Query: 96 RIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
R+I +FM+Q +SIYG +F DEN K+KH G +SMANAGP++NGSQFF+
Sbjct: 57 RVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFV 115
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
TT T WLDGRHVVFGKV+ GMDVV KVE + N PK V + D G L
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 110/174 (63%), Gaps = 9/174 (5%)
Query: 34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
KE + VYFDV + GRIVM L VPKTA+NFR LC KG G YKGST
Sbjct: 24 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGST 76
Query: 94 FHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQF 153
FHRIIP FM+Q SIYGEKFPDENF+LKHT G+LSMAN G TNGSQF
Sbjct: 77 FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136
Query: 154 FITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS--KVVVADSGEL 205
FIT T WLD +HVVFG+V+ GMDVV+K+ G ++G K ++ + D G L
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 32 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKG 91
N + V+FDV I G+ GR+ + LF VPKTAENFR CTGE K G P+ YKG
Sbjct: 5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKG 62
Query: 92 STFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGS 151
STFHR+I FM+Q SIY F DENFKL+H+ PGLLSMAN+GP TNG
Sbjct: 63 STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 152 QFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
QFFIT WLDG+HVVFGK++ G+ V+ K+E N PK VV++ GE+
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
+ +FD+ I +PAGR+V LF PKT ENFR LCTGEKG GKS KPLHYK FHR+
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
+ FM+Q ESIYG F DE+F +KH LLSMAN G DTNGSQFFITT
Sbjct: 88 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
T LDG HVVFG+V+SG +VV ++E + + P ++V + GEL
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
+ +FD+ I +PAGR+V LF PKT ENFR LCTGEKG GKS KPLHYK FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
+ FM+Q ESIYG F DE+F +KH LLSMAN G DTNGSQFFITT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
T LDG HVVFG+V+SG +VV ++E + + P ++V + GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
+ +FD+ I +PAGR+V LF PKT ENFR LCTGEKG GKS KPLHYK FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
+ FM+Q ESIYG F DE+F +KH LLSMAN G DTNGSQFFITT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
T LDG HVVFG+V+SG +VV ++E + + P ++V + GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+FDV G+P GRI M LF VP+TAENFRALCTGEKG G +K S FHR+IP
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIP 61
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
F+ Q +SIYG+KF DENF +KHTGPGLLSMAN G +TN SQF IT
Sbjct: 62 DFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKK 121
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
LD +HVVFG V GMD V K+E+ G G+ ++ + + G++
Sbjct: 122 AEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Query: 34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGS 92
K+ +V+ DV I G AGRIVM L+ P+T NF LCTG G GK SGKPLHYKGS
Sbjct: 3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 93 TFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
TFHR+I +FM+Q ESIYG F DE F +KH P ++SMAN GP+TNGSQ
Sbjct: 63 TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 122
Query: 153 FFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
FFITT L+ HVVFGKV+SG +VV K+E + P + VV+ + GEL
Sbjct: 123 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 109/177 (61%), Gaps = 16/177 (9%)
Query: 38 NKVYFDVE-----IAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGS 92
++V+FDVE A GRIV LF K VPKTA+NFR LC G G Y+ S
Sbjct: 3 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRES 55
Query: 93 TFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
TFHRIIP+FM+Q SIYG+KF DENF KH G+LSMANAGP+TNGSQ
Sbjct: 56 TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 115
Query: 153 FFITTVTTSWLDGRHVVFGKVLS--GMDVVYKVEAEGRQNGTPKSKVV--VADSGEL 205
FFITT TSWLDG+HVVFG+V VV ++EA G +G+ +S + + GEL
Sbjct: 116 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
+ +FD+EI +P GRI+ LF PKT +NF LC+GEKG+GK+ GK L YKGSTFHR+
Sbjct: 21 QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
+ +FM+Q ESIYG F DENF LKH LLSMAN G TNGSQFFITT
Sbjct: 81 VKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
LDG HVVFG V+SG +V+ ++E + P + V V D G L
Sbjct: 141 KPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 40 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
V+ D+ + G+ LF VPKT+ENFR CTGE + + P+ YK + FHR+I
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIK 119
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
FM+Q SIYGEKF DENF +KH GLLSMAN+GP+TNG QFFITT
Sbjct: 120 EFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKK 179
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG----TPKSKVVVADSGEL 205
WLDG++VVFG+++ ++ + E PK + V + GEL
Sbjct: 180 CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G IV+ L+ K PKT +NF L +G +Y G+ FHRII FM+Q
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
SIYG++F DE + LK TG G+L+MANAGPDTNGSQFF+T T WLDG+H +F
Sbjct: 71 GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 171 GKVLSGMDVVYKV 183
G+V G+ +V +V
Sbjct: 130 GRVCQGIGMVNRV 142
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G IV+ L+ K PKT +NF L +G +Y G+ FHRII FM+Q
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
SIYG++F DE + LK TG G+L+MANAGPDTNGSQFF+T T WLDG+H +F
Sbjct: 71 GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 171 GKVLSGMDVVYKV 183
G+V G+ +V +V
Sbjct: 130 GRVCQGIGMVNRV 142
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G IV+ L+ K PKT +NF L +G +Y G+ FHRII FM+Q
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
SIYG++F DE + LK TG G+L+MANAGPDTNGSQFF+T T WLDG+H +F
Sbjct: 71 GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 171 GKVLSGMDVVYKV 183
G+V G+ +V +V
Sbjct: 130 GRVCQGIGMVNRV 142
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 43 DVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 102
D I G I LF PKT ENF C + +Y G TFHRII FM
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN-------GYYNGHTFHRIIKGFM 71
Query: 103 LQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTS 161
+Q ESI+G +F DE + L+H P LSMANAG +TNGSQFFIT V T
Sbjct: 72 IQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 130
Query: 162 WLDGRHVVFGKVLSGMDVVYKV 183
WLD +H VFG+V GM+VV ++
Sbjct: 131 WLDNKHTVFGRVTKGMEVVQRI 152
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G I + LF K KT +NF +Y FHR+I FM+Q
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 112 XXXXXESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
ESI+G +F DE F L H+ P ++SMAN GP+TNGSQFFITTV WLD +H VF
Sbjct: 65 GTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123
Query: 171 GKVLSGMDVVYKVE 184
GKV G +V +E
Sbjct: 124 GKVTQGSKIVLDIE 137
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 14/135 (10%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G + + L PKT ENF LC K +Y G+ FHR I +F++Q
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 112 XXXXXESIYGEKFPDENFK--LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
ES +G+ F DE F+ L HTG G+LSMAN+GP++N SQFFIT + ++LD +H +
Sbjct: 79 GTGG-ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 170 FGKVLSGMDVVYKVE 184
FG+V+ G DV+ +E
Sbjct: 137 FGRVVGGFDVLTAME 151
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G + L+ PKT NF LC E G Y + FHR+IP+F++Q
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC--EMGF--------YDNTIFHRVIPNFVIQGGDPTGT 97
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
+SIYGE F DE N +LKHTG G+LSM+N GP+TN SQFFIT LDG+H +F
Sbjct: 98 GKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156
Query: 171 GKVLSGMDVVYKV 183
+V M + +
Sbjct: 157 ARVSKNMTCIENI 169
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
G I + +F + PKT ENF ALC +Y G FHR I FM+Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 111 XXXXXXESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
SI+G+KF DE + LKH G++SMAN GP+TNGSQFFIT LD ++ V
Sbjct: 59 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 170 FGKVLSGMDVVYKVE 184
FGKV+ G++ + ++E
Sbjct: 118 FGKVIDGLETLDELE 132
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
G I + +F + PKT ENF ALC +Y G FHR I FM+Q
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 111 XXXXXXESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
SI+G+KF DE + LKH G++SMAN GP+TNGSQFFIT LD ++ V
Sbjct: 65 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 170 FGKVLSGMDVVYKVE 184
FGKV+ G++ + ++E
Sbjct: 124 FGKVIDGLETLDELE 138
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGI---GKSGKPL--HYKGSTFHRIIPSFMLQXX 106
G I + LFG PKT NF L G K SG P Y G+ FHR+I FM+Q
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 107 XXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGR 166
+ ++F E L+ P LL+MANAGP TNGSQFFIT T L+ R
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 167 HVVFGKVLSG-----MDVVYKVEAEGRQNGTPKSKVVV 199
H +FG+V+ ++ + K +G N P VV+
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDG--NDRPTDPVVI 185
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
AG I + L+ K PK NF LC +Y + FHR++P F++Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 111 XXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
ESIYG F DE + +L+ GL++MANAG NGSQFF T L+ +H +
Sbjct: 83 TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 170 FGKVLSGMDVVYKV 183
FGKV D VY +
Sbjct: 142 FGKVTG--DTVYNM 153
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G + LF PK +NF AL SG +YK + FH+ I F++Q
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 112 XXXXXESIYGEKFPDENF-KLKHTGPGLLSMANAG----PDTNGSQFFITTVTTSWLDGR 166
ESIYG F DE + +LK+ G+LSMA+ G P+TNGSQFFIT + L+G
Sbjct: 76 GKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 167 HVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVAD 201
+V+FGK++ G + + +E ++ P ++++ D
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G + + L P+ ++F LC + ++ + FHR I +FM+Q
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 112 XXXXXESIY-----------GEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
+ + G F DE + +L H G G+LSMAN G +N S+FFIT +
Sbjct: 66 QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVE 184
L+ +H +FG+V+ G+DV+ + E
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWE 150
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 31/164 (18%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXX-- 109
G IV+ F P+T +NF C + Y + FHR+I FM+Q
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 110 XXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANA-GPDTNGSQFFITTVTTSWLDGR-- 166
E I E N LK+T G L+MA P + +QFFI V +L+
Sbjct: 59 MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 167 ------HVVFGKVLSGMDVVYKVE--AEGR---QNGTPKSKVVV 199
+ VF +V+ GMDVV K++ A GR PK V++
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
AG I + L + P + +NF SG Y +TFHR+IP FM+Q
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 111 XXXXXXESIYGEKFPDENFK------LKHTGPGLLSMAN-AGPDTNGSQFFITTVTTSWL 163
+K P+ K L++T G ++MA A D+ SQFFI ++L
Sbjct: 63 QMQ--------QKKPNPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFL 113
Query: 164 D-GR----HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVVADSGELP 206
D G+ + VFGKV+ GMDV K+ G P VV+ + LP
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
AG I + L + P + +NF SG Y +TFHR+IP FM+Q
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 111 XXXXXXESIYGEKFPDENFK------LKHTGPGLLSMAN-AGPDTNGSQFFITTVTTSWL 163
+K P+ K L++T G ++MA A D+ SQFFI ++L
Sbjct: 63 QMQ--------QKKPNPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFL 113
Query: 164 D-GR----HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVVADSGELP 206
D G+ + VFGKV+ GMDV K+ G P VV+ + LP
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 31/164 (18%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXX-- 109
G IV+ F P+T +NF C + Y + FHR+I FM+Q
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 110 XXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANA-GPDTNGSQFFITTVTTSWLDGR-- 166
E I E N LK+T G L+MA P + +QFFI V +L+
Sbjct: 59 MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 167 ------HVVFGKVLSGMDVVYKVE--AEGR---QNGTPKSKVVV 199
+ VF +V+ GMD V K++ A GR PK V++
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 50/157 (31%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G I + LF P+TA NF K HY G+ FHR+I FM+Q
Sbjct: 9 GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQ------- 51
Query: 112 XXXXXESIYGEKFPDENFKLKHTGPGLLSMANAG---------------PDTNGSQFFIT 156
G F + K K T + + AN G P + +QFFI
Sbjct: 52 ---------GGGF-EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFIN 101
Query: 157 TVTTSWLDGR--------HVVFGKVLSGMDVVYKVEA 185
++LD + VFG+V+ G DVV ++++
Sbjct: 102 VKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKS 138
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGE------KGIGKSGKPLH---- 88
+VY D+ + + GR+ + LF A P ENF L G+ G GK H
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 89 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEK-----FPDENFKLKHTGPGLLSMAN 143
Y+G FH ++ + + ++Y ++ F D + H GLLS+
Sbjct: 76 YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 144 AGPDTNGSQFFITTVTTSW-----------LDGRHVVFGKVLSGMDVVYKVEA 185
D +G++++ +T + LD VV G+V G+DV+ K+ +
Sbjct: 133 PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINS 185
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 69/176 (39%), Gaps = 55/176 (31%)
Query: 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
G I + L PKT ENF L +KG HY G+ FHR+I FM+Q
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQ------- 55
Query: 112 XXXXXESIYGEKFPDENFKLKHTGPGLLSMANAG---------------PDTNGSQFFIT 156
G F + K K T + + AN G P + +QFFI
Sbjct: 56 ---------GGGF-EPGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFIN 105
Query: 157 TVTTSWLDGR--------HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVV 199
+L+ + VFGKV+ G D+V K++A +G P VV+
Sbjct: 106 VNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 40 VYFDVEIAGK-----PAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
+YF GK G + + L+ + P NF LC +G +Y + F
Sbjct: 14 LYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCL--EG--------YYVNTIF 63
Query: 95 HRIIPSFMLQXXXXXXXXXXXXESIY-GEKFPDENF-KLKHTGPGLLSMANAGPD----- 147
HR++ F++Q ++ + G+ F E +LK GL+ +AN G
Sbjct: 64 HRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAE 123
Query: 148 ---------TNGSQFFITTVTTSWLDGRHVVFGKV 173
TNG+QFFIT L+ + +FGKV
Sbjct: 124 NDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,170,948
Number of Sequences: 62578
Number of extensions: 252789
Number of successful extensions: 812
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 76
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)