Query 028574
Match_columns 207
No_of_seqs 149 out of 1317
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880 Peptidyl-prolyl cis-tr 100.0 6.4E-56 1.4E-60 347.6 17.3 173 28-207 30-204 (217)
2 KOG0546 HSP90 co-chaperone CPR 100.0 8.9E-56 1.9E-60 374.9 15.1 171 36-206 7-179 (372)
3 PTZ00060 cyclophilin; Provisio 100.0 5.1E-49 1.1E-53 314.8 20.9 169 37-206 15-183 (183)
4 cd01926 cyclophilin_ABH_like c 100.0 5.2E-49 1.1E-53 310.0 20.1 164 38-203 1-164 (164)
5 KOG0879 U-snRNP-associated cyc 100.0 1.9E-48 4.1E-53 288.8 13.2 169 35-205 8-177 (177)
6 PLN03149 peptidyl-prolyl isome 100.0 4.1E-47 8.9E-52 304.3 19.1 167 37-205 18-186 (186)
7 PTZ00221 cyclophilin; Provisio 100.0 7.7E-47 1.7E-51 312.6 20.8 169 34-206 49-220 (249)
8 COG0652 PpiB Peptidyl-prolyl c 100.0 1.4E-44 3E-49 280.2 15.5 145 48-205 5-157 (158)
9 KOG0881 Cyclophilin type pepti 100.0 1.4E-45 3.1E-50 270.5 8.9 152 38-205 10-163 (164)
10 cd01923 cyclophilin_RING cyclo 100.0 1E-43 2.3E-48 278.4 18.4 147 49-206 6-154 (159)
11 cd01928 Cyclophilin_PPIL3_like 100.0 6.4E-44 1.4E-48 277.9 17.0 143 49-202 7-151 (153)
12 cd01927 cyclophilin_WD40 cyclo 100.0 1.2E-43 2.5E-48 275.1 16.9 142 49-201 4-147 (148)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 1.3E-43 2.9E-48 274.1 16.5 142 49-201 4-146 (146)
14 PRK10903 peptidyl-prolyl cis-t 100.0 7.5E-43 1.6E-47 280.4 20.6 145 49-206 35-190 (190)
15 cd01921 cyclophilin_RRM cyclop 100.0 5E-43 1.1E-47 276.4 17.4 147 49-206 4-160 (166)
16 KOG0111 Cyclophilin-type pepti 100.0 5E-44 1.1E-48 285.1 10.8 167 33-206 132-298 (298)
17 cd01925 cyclophilin_CeCYP16-li 100.0 3.3E-41 7.2E-46 267.1 18.4 155 36-206 4-161 (171)
18 KOG0883 Cyclophilin type, U bo 100.0 1.8E-41 3.8E-46 288.8 12.0 158 34-205 272-431 (518)
19 PRK10791 peptidyl-prolyl cis-t 100.0 3.9E-40 8.5E-45 259.2 16.9 144 49-205 6-163 (164)
20 cd01920 cyclophilin_EcCYP_like 100.0 2.1E-39 4.5E-44 253.1 16.4 140 49-201 4-154 (155)
21 PF00160 Pro_isomerase: Cyclop 100.0 5.7E-39 1.2E-43 250.2 17.2 150 41-204 1-155 (155)
22 KOG0884 Similar to cyclophilin 100.0 5.6E-40 1.2E-44 239.8 10.2 143 49-202 7-152 (161)
23 KOG0882 Cyclophilin-related pe 100.0 4.4E-40 9.5E-45 284.9 10.7 143 49-202 411-555 (558)
24 cd00317 cyclophilin cyclophili 100.0 7.9E-38 1.7E-42 241.5 16.5 141 49-201 4-146 (146)
25 KOG0865 Cyclophilin type pepti 100.0 9.4E-38 2E-42 243.9 9.7 163 36-205 2-167 (167)
26 cd01924 cyclophilin_TLP40_like 100.0 1.2E-36 2.7E-41 241.8 14.7 128 48-185 3-164 (176)
27 KOG0415 Predicted peptidyl pro 100.0 2E-35 4.4E-40 249.3 12.5 147 49-206 7-163 (479)
28 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.3E-35 5E-40 250.3 11.7 158 32-205 7-167 (439)
29 KOG0882 Cyclophilin-related pe 97.7 0.00014 3E-09 64.8 8.2 139 53-202 113-259 (558)
30 TIGR03268 methan_mark_3 putati 96.6 0.017 3.6E-07 52.4 9.2 102 52-184 201-302 (503)
31 PRK00969 hypothetical protein; 96.6 0.015 3.2E-07 52.9 8.9 102 52-184 204-305 (508)
32 COG4070 Predicted peptidyl-pro 96.2 0.018 3.9E-07 50.8 7.2 101 51-184 202-304 (512)
33 TIGR03268 methan_mark_3 putati 96.1 0.072 1.6E-06 48.5 10.5 114 52-185 375-495 (503)
34 PF12903 DUF3830: Protein of u 96.0 0.039 8.4E-07 42.5 7.3 108 52-184 8-129 (147)
35 COG4070 Predicted peptidyl-pro 95.2 0.067 1.4E-06 47.3 6.7 22 53-74 377-398 (512)
36 PRK00969 hypothetical protein; 93.4 0.56 1.2E-05 42.9 8.8 109 49-185 57-167 (508)
37 PF07172 GRP: Glycine rich pro 90.8 0.19 4.1E-06 36.0 2.2 23 1-23 1-23 (95)
38 PF04126 Cyclophil_like: Cyclo 83.2 7.4 0.00016 28.8 7.1 46 134-184 60-112 (120)
39 PF08139 LPAM_1: Prokaryotic m 52.7 11 0.00025 20.0 1.5 16 5-20 8-23 (25)
40 PRK10449 heat-inducible protei 50.4 34 0.00073 25.9 4.5 45 4-51 1-45 (140)
41 PF13956 Ibs_toxin: Toxin Ibs, 50.2 9.2 0.0002 18.7 0.8 13 4-16 2-14 (19)
42 PF15284 PAGK: Phage-encoded v 45.3 21 0.00045 23.3 2.2 24 4-27 4-27 (61)
43 PRK14864 putative biofilm stre 42.3 53 0.0012 23.8 4.2 37 49-99 49-85 (104)
44 PRK13838 conjugal transfer pil 42.0 49 0.0011 26.2 4.4 57 1-57 1-59 (176)
45 PF08415 NRPS: Nonribosomal pe 36.4 37 0.00079 21.5 2.3 27 174-201 4-30 (58)
46 PF13617 Lipoprotein_19: YnbE- 36.3 71 0.0015 20.7 3.6 9 52-60 39-47 (59)
47 PRK15304 putative fimbrial out 35.6 1E+02 0.0022 30.3 6.3 38 37-74 59-96 (801)
48 PF05913 DUF871: Bacterial pro 35.1 21 0.00046 31.6 1.4 50 134-184 298-348 (357)
49 PF11314 DUF3117: Protein of u 35.0 43 0.00092 20.8 2.3 29 37-67 16-44 (51)
50 COG5633 Predicted periplasmic 29.7 88 0.0019 23.2 3.6 21 4-24 1-21 (123)
51 PRK15310 fimbrial outer membra 29.3 1E+02 0.0022 30.7 4.9 28 35-62 32-59 (895)
52 PF15240 Pro-rich: Proline-ric 28.5 35 0.00076 27.2 1.5 9 21-29 13-21 (179)
53 PF01456 Mucin: Mucin-like gly 27.9 52 0.0011 24.6 2.4 23 5-27 3-25 (143)
54 PF06291 Lambda_Bor: Bor prote 27.4 45 0.00098 23.8 1.8 21 4-24 1-21 (97)
55 PRK11627 hypothetical protein; 27.3 48 0.001 26.7 2.1 20 4-23 2-21 (192)
56 PRK10081 entericidin B membran 26.0 66 0.0014 19.9 2.1 10 4-13 2-11 (48)
57 PRK09810 entericidin A; Provis 25.6 71 0.0015 19.1 2.1 12 4-15 2-13 (41)
58 PF12396 DUF3659: Protein of u 25.6 80 0.0017 20.7 2.6 28 163-192 16-44 (64)
59 COG5429 Uncharacterized secret 25.2 1.4E+02 0.0031 25.0 4.5 23 54-76 43-69 (261)
60 PRK13791 lysozyme inhibitor; P 24.9 1.2E+02 0.0026 22.3 3.7 15 1-15 1-15 (113)
61 PRK10866 outer membrane biogen 23.8 53 0.0012 27.2 1.9 20 1-20 1-20 (243)
62 COG5510 Predicted small secret 22.8 48 0.001 20.1 1.0 14 7-20 8-21 (44)
63 COG3420 NosD Nitrous oxidase a 22.3 1.3E+02 0.0028 26.7 3.9 22 34-57 29-50 (408)
64 PRK11372 lysozyme inhibitor; P 22.0 86 0.0019 22.8 2.4 14 2-15 1-14 (109)
65 KOG1545 Voltage-gated shaker-l 21.8 81 0.0017 28.3 2.6 21 6-26 363-383 (507)
66 COG4704 Uncharacterized protei 21.7 3.8E+02 0.0081 20.6 9.7 29 49-77 41-72 (151)
67 COG0219 CspR Predicted rRNA me 21.5 1.5E+02 0.0032 23.1 3.7 33 54-99 3-35 (155)
68 PRK15396 murein lipoprotein; P 21.0 89 0.0019 21.4 2.2 22 1-22 1-23 (78)
69 PRK15217 fimbrial outer membra 20.9 3.3E+02 0.0071 27.0 6.9 38 37-74 53-91 (826)
70 PRK13883 conjugal transfer pro 20.3 77 0.0017 24.6 2.0 18 4-21 1-18 (151)
71 TIGR03562 osmo_induc_OsmC pero 20.0 3.2E+02 0.007 20.4 5.3 25 62-100 105-129 (135)
No 1
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-56 Score=347.57 Aligned_cols=173 Identities=71% Similarity=1.182 Sum_probs=164.2
Q ss_pred cccccccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhc-CCCCCCCCCCcccccCCEEEEeecCceeEec
Q 028574 28 KSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCT-GEKGIGKSGKPLHYKGSTFHRIIPSFMLQGG 106 (207)
Q Consensus 28 ~~~~~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~-~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G 106 (207)
..+.+.|+++++|||||++++...|||+|+||++.+|+||+||.+||. +.+++ .|.+++||||+||||||||
T Consensus 30 ~~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~-------gY~gS~FhRVi~nfmIQGG 102 (217)
T KOG0880|consen 30 KKYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY-------GYKGSKFHRVIPNFMIQGG 102 (217)
T ss_pred cccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc-------ccCCceeeeeecCceeecC
Confidence 345677899999999999999999999999999999999999999998 66665 4999999999999999999
Q ss_pred cCCCCCCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHh-
Q 028574 107 DFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA- 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~- 185 (207)
|++.+++.++.++||+.++||++.++|+++|.||||+.||+++|||||||+...++||++|+|||+|++|||++.+|+.
T Consensus 103 d~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~ 182 (217)
T KOG0880|consen 103 DFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENV 182 (217)
T ss_pred ccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCCcccceEEeeeeeecC
Q 028574 186 EGRQNGTPKSKVVVADSGELPL 207 (207)
Q Consensus 186 ~~~~~~~P~~~i~I~~cg~l~~ 207 (207)
..+++++|.++++|.+||+|++
T Consensus 183 ~TD~~dkP~e~v~I~~~g~l~~ 204 (217)
T KOG0880|consen 183 KTDERDKPLEDVVIANCGELPV 204 (217)
T ss_pred ccCCCCCccccEEEeecCcccc
Confidence 4578899999999999999975
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-56 Score=374.94 Aligned_cols=171 Identities=65% Similarity=1.099 Sum_probs=163.8
Q ss_pred cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCC-CCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574 36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR 114 (207)
Q Consensus 36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~-~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~ 114 (207)
.+++|||||++++.+.|||+||||.|.||+||+||+.||+|++|.+ .+++.+.|.|+.||||+++|||||||+..++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 5789999999999999999999999999999999999999999964 578999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCc
Q 028574 115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTP 193 (207)
Q Consensus 115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P 193 (207)
||++|||..++||++.++|+++++||||+.|||++|||||||+.+.|||||+|+|||+||+|++|++.|+... +++.+|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999665 555699
Q ss_pred ccceEEeeeeeec
Q 028574 194 KSKVVVADSGELP 206 (207)
Q Consensus 194 ~~~i~I~~cg~l~ 206 (207)
..+|+|.+||+|.
T Consensus 167 ~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 167 LADVVISDCGELV 179 (372)
T ss_pred ccceEeccccccc
Confidence 9999999999984
No 3
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=5.1e-49 Score=314.80 Aligned_cols=169 Identities=69% Similarity=1.123 Sum_probs=156.0
Q ss_pred CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574 37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG 116 (207)
Q Consensus 37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 116 (207)
++++|||+++++++.|+|+||||.+.||++|+||++||+++..+. .++..+|+++.||||+|+++||+||+..+.+.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 678999999999999999999999999999999999998765421 3467799999999999999999999876777888
Q ss_pred ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574 117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK 196 (207)
Q Consensus 117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~ 196 (207)
.++++..+++|...++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++.++++++|.++
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~ 173 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKP 173 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCC
Confidence 88888889899888899889999999999999999999999999999999999999999999999999888888999999
Q ss_pred eEEeeeeeec
Q 028574 197 VVVADSGELP 206 (207)
Q Consensus 197 i~I~~cg~l~ 206 (207)
|+|.+||+|.
T Consensus 174 v~I~~cg~~~ 183 (183)
T PTZ00060 174 VVVTDCGELQ 183 (183)
T ss_pred eEEEEeEEcC
Confidence 9999999983
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=5.2e-49 Score=309.96 Aligned_cols=164 Identities=77% Similarity=1.296 Sum_probs=151.6
Q ss_pred ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574 38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE 117 (207)
Q Consensus 38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~ 117 (207)
|++|||+.+++++.|+|+||||.+.||++|+||++||++++++++ +..+|+++.|||++|+|+||+||+..+++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 579999999999999999999999999999999999987665432 445899999999999999999998767777888
Q ss_pred cccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccce
Q 028574 118 SIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKV 197 (207)
Q Consensus 118 ~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~i 197 (207)
++++..+++|...++|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|+.+|
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i 158 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV 158 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence 88888899998889998999999999999999999999999999999999999999999999999998887789999999
Q ss_pred EEeeee
Q 028574 198 VVADSG 203 (207)
Q Consensus 198 ~I~~cg 203 (207)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 5
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-48 Score=288.84 Aligned_cols=169 Identities=59% Similarity=1.006 Sum_probs=160.1
Q ss_pred ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574 35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR 114 (207)
Q Consensus 35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~ 114 (207)
+.++.||||+++++.+.|||.||||.|.+|++++||.++|+|+-- +.++..-|+++.|||++++|||||||+..++|.
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCc
Confidence 447899999999999999999999999999999999999998743 456777899999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCc
Q 028574 115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTP 193 (207)
Q Consensus 115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P 193 (207)
+..++|+..++||++.++|..+|++|||+++++++|.|||||...+.+||++|+|||||++|+.++++|+.+++ .|++|
T Consensus 86 G~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 86 GVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred eEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875 78999
Q ss_pred ccceEEeeeeee
Q 028574 194 KSKVVVADSGEL 205 (207)
Q Consensus 194 ~~~i~I~~cg~l 205 (207)
+.+|.|..||++
T Consensus 166 Kl~v~i~qCGem 177 (177)
T KOG0879|consen 166 KLPVVIVQCGEM 177 (177)
T ss_pred CCcEEEeecccC
Confidence 999999999974
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=4.1e-47 Score=304.31 Aligned_cols=167 Identities=60% Similarity=1.016 Sum_probs=150.8
Q ss_pred CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574 37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG 116 (207)
Q Consensus 37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 116 (207)
.+++|||+.+++++.|||+||||.+.||++|+||++||+++.. ..+....|+++.||||+++++||+||+..+++.++
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 5789999999999999999999999999999999999987542 11122349999999999999999999876778888
Q ss_pred ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEE-eCHHHHHHHHhCCC-CCCCcc
Q 028574 117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL-SGMDVVYKVEAEGR-QNGTPK 194 (207)
Q Consensus 117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi-~G~~vld~I~~~~~-~~~~P~ 194 (207)
.++++..+++|....+|+++|+|+|++.++++++|||||++++.|+||++|+|||||+ +|||||++|+..++ ++++|.
T Consensus 96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~ 175 (186)
T PLN03149 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK 175 (186)
T ss_pred ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence 8888888999988888999999999999999999999999999999999999999999 79999999997765 779999
Q ss_pred cceEEeeeeee
Q 028574 195 SKVVVADSGEL 205 (207)
Q Consensus 195 ~~i~I~~cg~l 205 (207)
.+|+|.+||++
T Consensus 176 ~~i~I~~cG~~ 186 (186)
T PLN03149 176 LACVISECGEM 186 (186)
T ss_pred CCeEEEeCEeC
Confidence 99999999985
No 7
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=7.7e-47 Score=312.57 Aligned_cols=169 Identities=35% Similarity=0.528 Sum_probs=152.1
Q ss_pred cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCC-CCCcccccCCEEEEeecC-ceeEeccCCCC
Q 028574 34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPS-FMLQGGDFTLG 111 (207)
Q Consensus 34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~-~~k~~~Y~g~~f~rv~~~-~~iq~G~~~~~ 111 (207)
+..+++||||+.+++.+.|+|+||||.+.||++|+||++||+|+++.+. .++..+|+++.||||+++ ++||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 4568999999999999999999999999999999999999998876542 344556999999999986 8999999763
Q ss_pred CCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCC
Q 028574 112 DGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQN 190 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~ 190 (207)
.+..++|..+++|...++|+++|+|+|++.++++++||||||+++.|+||++|+|||||++|||||++|+..+ +++
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 2345668889999888999999999999999999999999999999999999999999999999999999776 578
Q ss_pred CCcccceEEeeeeeec
Q 028574 191 GTPKSKVVVADSGELP 206 (207)
Q Consensus 191 ~~P~~~i~I~~cg~l~ 206 (207)
++|..+|+|.+||+|+
T Consensus 205 grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 205 GRPLLPVTVSFCGALT 220 (249)
T ss_pred CCCCCCeEEEECeEec
Confidence 9999999999999986
No 8
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=280.21 Aligned_cols=145 Identities=47% Similarity=0.781 Sum_probs=127.9
Q ss_pred CeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCC
Q 028574 48 GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDE 127 (207)
Q Consensus 48 ~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 127 (207)
.|+.|+|+||||++.||+||+||++|| +.+||+|+.||||+++|||||||+..+++.+++ +..+++|
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E 71 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE 71 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence 378999999999999999999999999 455899999999999999999999976677776 4788999
Q ss_pred CCCCccCC--CcEEEeeecC-CCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCC-----CCCcccceEE
Q 028574 128 NFKLKHTG--PGLLSMANAG-PDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-----NGTPKSKVVV 199 (207)
Q Consensus 128 ~~~~~h~~--~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~~~i~I 199 (207)
+....|.+ +|+|||||.+ |++++|||||++.+.|+||++|+|||+|++|||+||+|++..+. ...|..+++|
T Consensus 72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i 151 (158)
T COG0652 72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151 (158)
T ss_pred ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence 88777776 9999999998 99999999999999999999999999999999999999975433 2456677888
Q ss_pred eeeeee
Q 028574 200 ADSGEL 205 (207)
Q Consensus 200 ~~cg~l 205 (207)
.+..++
T Consensus 152 ~~~~~~ 157 (158)
T COG0652 152 LSVKIV 157 (158)
T ss_pred eeeeee
Confidence 776654
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=270.52 Aligned_cols=152 Identities=49% Similarity=0.856 Sum_probs=140.9
Q ss_pred ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574 38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE 117 (207)
Q Consensus 38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~ 117 (207)
+.|+++ |++|.|++|||-+.||++|.||.+|+ |.+||+|+.||||+++|+|||||++ ++|.++.
T Consensus 10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGGa 73 (164)
T KOG0881|consen 10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGGA 73 (164)
T ss_pred CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCC-CCCCCcc
Confidence 456666 88999999999999999999999999 6679999999999999999999998 8899999
Q ss_pred cccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhC-CCCCCCccc
Q 028574 118 SIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE-GRQNGTPKS 195 (207)
Q Consensus 118 ~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~-~~~~~~P~~ 195 (207)
++||..++||.+ .++|..+|.++||+.+|++++|||||||.+.++||++|++||||..||+|+.++..+ .+.+++|+.
T Consensus 74 SIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~ 153 (164)
T KOG0881|consen 74 SIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPID 153 (164)
T ss_pred ccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCcc
Confidence 999999999966 689999999999999999999999999999999999999999999999999999855 566799999
Q ss_pred ceEEeeeeee
Q 028574 196 KVVVADSGEL 205 (207)
Q Consensus 196 ~i~I~~cg~l 205 (207)
+++|.++-.+
T Consensus 154 ~~kIika~~~ 163 (164)
T KOG0881|consen 154 EVKIIKAYPS 163 (164)
T ss_pred ceeeEeeecC
Confidence 9999987554
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1e-43 Score=278.41 Aligned_cols=147 Identities=46% Similarity=0.786 Sum_probs=135.2
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||++.||++|+||++||+ .++|+++.|||++|++++|+||+. +++.++.++++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~ 74 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCK----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 74 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence 679999999999999999999999993 448999999999999999999986 667788888888898886
Q ss_pred C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeeeeeec
Q 028574 129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGELP 206 (207)
Q Consensus 129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~cg~l~ 206 (207)
. .++|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|+..+ +++++|+++|+|.+|+++.
T Consensus 75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 4 5788899999999999999999999999999999999999999999999999999765 5779999999999999873
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.4e-44 Score=277.94 Aligned_cols=143 Identities=47% Similarity=0.765 Sum_probs=131.7
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||++.||++|+||++||+ .+||+++.|||++|+|++||||+. +++.++.++++..+++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 75 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF 75 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence 789999999999999999999999994 348999999999999999999986 567777788888898887
Q ss_pred C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeee
Q 028574 129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADS 202 (207)
Q Consensus 129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~c 202 (207)
. .++|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|++.+ +++++|..+|+|.+|
T Consensus 76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 151 (153)
T cd01928 76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV 151 (153)
T ss_pred ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence 5 5788889999999999999999999999999999999999999999999999999765 477999999999998
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.2e-43 Score=275.10 Aligned_cols=142 Identities=51% Similarity=0.847 Sum_probs=130.8
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|++|+|+||||.+.||++|+||++||+ .+||+++.|||++|+|++|+||+. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 72 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF 72 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence 679999999999999999999999994 448999999999999999999986 667778888888899887
Q ss_pred C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEee
Q 028574 129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVAD 201 (207)
Q Consensus 129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~ 201 (207)
. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|+..+ +++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 6 7888889999999999999999999999999999999999999999999999999776 56799999999975
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.3e-43 Score=274.15 Aligned_cols=142 Identities=51% Similarity=0.872 Sum_probs=130.2
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||.+.||++|+||++||+ .+||+++.|||++|+|++|||++. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~ 72 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI 72 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence 779999999999999999999999994 448999999999999999999986 566777778888888885
Q ss_pred -CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccceEEee
Q 028574 129 -FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVAD 201 (207)
Q Consensus 129 -~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~i~I~~ 201 (207)
..++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|..+|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 4688888999999999999999999999999999999999999999999999999988777899999999963
No 14
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=7.5e-43 Score=280.44 Aligned_cols=145 Identities=33% Similarity=0.520 Sum_probs=124.0
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||++.||++|+||++|| +.+||+|+.|||++|+|++|||++....+ ...++..+++|.
T Consensus 35 T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~ 101 (190)
T PRK10903 35 TSAGNIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEA 101 (190)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcc
Confidence 67999999999999999999999999 44589999999999999999998763321 122345677776
Q ss_pred CCCccCCCcEEEeeecC-CCCCCceEEEecCCCCCCCC-----CccEEEEEEeCHHHHHHHHhCCCC-----CCCcccce
Q 028574 129 FKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLDG-----RHVVFGKVLSGMDVVYKVEAEGRQ-----NGTPKSKV 197 (207)
Q Consensus 129 ~~~~h~~~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld~-----~~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~~~i 197 (207)
....|+.+|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|+..+++ +++|..+|
T Consensus 102 ~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v 181 (190)
T PRK10903 102 DNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 181 (190)
T ss_pred cccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCe
Confidence 55556779999999965 89999999999999999984 899999999999999999977653 47999999
Q ss_pred EEeeeeeec
Q 028574 198 VVADSGELP 206 (207)
Q Consensus 198 ~I~~cg~l~ 206 (207)
+|.+|++++
T Consensus 182 ~I~~~~v~~ 190 (190)
T PRK10903 182 VILSAKVLP 190 (190)
T ss_pred EEEEEEEeC
Confidence 999999874
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=5e-43 Score=276.40 Aligned_cols=147 Identities=39% Similarity=0.634 Sum_probs=129.1
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccC-------
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYG------- 121 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~------- 121 (207)
|+.|+|+||||.+.||++|+||++||+ .++|+++.|||++++++|||||+. +++.++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~ 72 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA 72 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence 779999999999999999999999994 348999999999999999999986 55566655543
Q ss_pred CCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCC-CCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceE
Q 028574 122 EKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVT-TSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVV 198 (207)
Q Consensus 122 ~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~-~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~ 198 (207)
..+++|.. .++|+.+|+|+|++.++++++|||||++++ .++||++|+|||||++|||||++|+... +++++|+.+|+
T Consensus 73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~ 152 (166)
T cd01921 73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR 152 (166)
T ss_pred cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 23556653 678989999999999999999999999975 7999999999999999999999999665 57799999999
Q ss_pred Eeeeeeec
Q 028574 199 VADSGELP 206 (207)
Q Consensus 199 I~~cg~l~ 206 (207)
|.+|++|+
T Consensus 153 I~~~~i~~ 160 (166)
T cd01921 153 IKHTHILD 160 (166)
T ss_pred EEEEEEEC
Confidence 99999984
No 16
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-44 Score=285.12 Aligned_cols=167 Identities=62% Similarity=1.035 Sum_probs=161.5
Q ss_pred ccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574 33 LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGD 112 (207)
Q Consensus 33 ~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~ 112 (207)
...-++.+|+++.++....|||+++|..|..|.+++||..||++++|+| |.|++||||+|.||+||||++.++
T Consensus 132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~n 204 (298)
T KOG0111|consen 132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGN 204 (298)
T ss_pred hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCC
Confidence 3456789999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCC
Q 028574 113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~ 192 (207)
|.++.++||..+.+|++.++|..+|+|||++++++++||||||+.....+||++|+|||.|++||+|+++++..+++.++
T Consensus 205 gtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgk 284 (298)
T KOG0111|consen 205 GTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK 284 (298)
T ss_pred CCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeeeeeec
Q 028574 193 PKSKVVVADSGELP 206 (207)
Q Consensus 193 P~~~i~I~~cg~l~ 206 (207)
|.+.|.|.+||+|.
T Consensus 285 p~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 285 PQQKVKIVECGEIE 298 (298)
T ss_pred cceEEEEEeccccC
Confidence 99999999999974
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.3e-41 Score=267.11 Aligned_cols=155 Identities=41% Similarity=0.675 Sum_probs=137.1
Q ss_pred cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCC
Q 028574 36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRG 115 (207)
Q Consensus 36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 115 (207)
.+.+|.++ |++|+|+||||.+.||++|+||++||+ .+||+++.|||++|+|++|||++. +++.+
T Consensus 4 ~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g 67 (171)
T cd01925 4 TTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTG 67 (171)
T ss_pred cccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCcc
Confidence 34555555 779999999999999999999999994 448999999999999999999986 66777
Q ss_pred CccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe-CHHHHHHHHhCC-CCCCC
Q 028574 116 GESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS-GMDVVYKVEAEG-RQNGT 192 (207)
Q Consensus 116 ~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~-G~~vld~I~~~~-~~~~~ 192 (207)
+.++++..+++|.. .++|+++|+|+|++.++++++|||||++++.++||++|+|||||++ +++++++|+... +++++
T Consensus 68 ~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~ 147 (171)
T cd01925 68 GESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDER 147 (171)
T ss_pred CcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCC
Confidence 88888888988865 5678899999999999999999999999999999999999999994 688899999654 56789
Q ss_pred cccceEEeeeeeec
Q 028574 193 PKSKVVVADSGELP 206 (207)
Q Consensus 193 P~~~i~I~~cg~l~ 206 (207)
|.++|+|.+|++++
T Consensus 148 P~~~i~I~~~~i~~ 161 (171)
T cd01925 148 PVYPPKITSVEVLE 161 (171)
T ss_pred cCCCeEEEEEEEEc
Confidence 99999999999874
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-41 Score=288.80 Aligned_cols=158 Identities=42% Similarity=0.745 Sum_probs=146.6
Q ss_pred cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574 34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG 113 (207)
Q Consensus 34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~ 113 (207)
..+..+-|+.+.++ .|.|.+||++|.+|++|+||++|| +.+||+|+.|||.+++||||||||+ ++|
T Consensus 272 ~rvKkkgyvrl~Tn---~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG 337 (518)
T KOG0883|consen 272 TRVKKKGYVRLVTN---HGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTG 337 (518)
T ss_pred ccccccceEEEecc---CCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCC
Confidence 56677888888755 899999999999999999999999 5569999999999999999999998 899
Q ss_pred CCCccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCC
Q 028574 114 RGGESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNG 191 (207)
Q Consensus 114 ~~~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~ 191 (207)
.||+++||.++.||+. .+.|+.||+||||++||+++||||||+..++.+||++|++||||+.|+++|++|+.++ ++++
T Consensus 338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D 417 (518)
T KOG0883|consen 338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD 417 (518)
T ss_pred CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence 9999999999999976 6999999999999999999999999999999999999999999999999999999765 5679
Q ss_pred CcccceEEeeeeee
Q 028574 192 TPKSKVVVADSGEL 205 (207)
Q Consensus 192 ~P~~~i~I~~cg~l 205 (207)
+|+.+|+|.+.-+.
T Consensus 418 rP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 418 RPKEEIKIEDAIVF 431 (518)
T ss_pred CcccceEEeeeEEe
Confidence 99999999987653
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=3.9e-40 Score=259.16 Aligned_cols=144 Identities=33% Similarity=0.560 Sum_probs=120.4
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||++.||++|+||++|| +.+||+++.||||+|+|+||||++..+.+. ..++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~ 72 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA 72 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcc
Confidence 77999999999999999999999999 444899999999999999999987533221 12345677775
Q ss_pred CCCccCCCcEEEeeecC-CCCCCceEEEecCCCCCCC-------C-CccEEEEEEeCHHHHHHHHhCCCC-----CCCcc
Q 028574 129 FKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLD-------G-RHVVFGKVLSGMDVVYKVEAEGRQ-----NGTPK 194 (207)
Q Consensus 129 ~~~~h~~~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld-------~-~~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~ 194 (207)
....|+.+|+|+|++.+ +++++|||||++++.++|| + +|+|||||++|||||++|+..++. +++|.
T Consensus 73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~ 152 (164)
T PRK10791 73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_pred cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence 44334579999999975 8999999999999988776 3 799999999999999999977653 36999
Q ss_pred cceEEeeeeee
Q 028574 195 SKVVVADSGEL 205 (207)
Q Consensus 195 ~~i~I~~cg~l 205 (207)
.+|+|.+|.+.
T Consensus 153 ~~v~I~~~~i~ 163 (164)
T PRK10791 153 EDVIIESVTVS 163 (164)
T ss_pred CCeEEEEEEEe
Confidence 99999999764
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.1e-39 Score=253.09 Aligned_cols=140 Identities=33% Similarity=0.492 Sum_probs=119.1
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||++.||++|+||++|| +.+||+++.||||+|+|++|||++....+. ..++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYV----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 67999999999999999999999999 344899999999999999999997643222 22345667776
Q ss_pred CCCccCCCcEEEeeecC-CCCCCceEEEecCCCCCCCC-----CccEEEEEEeCHHHHHHHHhCCCCC-----CCcccce
Q 028574 129 FKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLDG-----RHVVFGKVLSGMDVVYKVEAEGRQN-----GTPKSKV 197 (207)
Q Consensus 129 ~~~~h~~~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld~-----~~~vfG~Vi~G~~vld~I~~~~~~~-----~~P~~~i 197 (207)
....|+.+|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|++.++++ ++|..+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 55556789999999965 89999999999999999995 7999999999999999999776533 5899999
Q ss_pred EEee
Q 028574 198 VVAD 201 (207)
Q Consensus 198 ~I~~ 201 (207)
+|.+
T Consensus 151 ~i~~ 154 (155)
T cd01920 151 IIES 154 (155)
T ss_pred EEEE
Confidence 9976
No 21
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=5.7e-39 Score=250.16 Aligned_cols=150 Identities=51% Similarity=0.861 Sum_probs=128.9
Q ss_pred EEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC-ccc
Q 028574 41 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG-ESI 119 (207)
Q Consensus 41 ~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~-~~~ 119 (207)
|++|++++ .|+|+||||++.||++|+||++||+. ++|+++.|||++|+++||+|++......+. ...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~----------~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTS----------GFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHT----------TSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcc----------cccCCceeecccccceeeeeeccCCCCccccccc
Confidence 68888865 99999999999999999999999953 379999999999999999999874433111 122
Q ss_pred cCCCCCCCCC--CCccCCCcEEEeeecC--CCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCccc
Q 028574 120 YGEKFPDENF--KLKHTGPGLLSMANAG--PDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS 195 (207)
Q Consensus 120 ~~~~~~~e~~--~~~h~~~G~v~~~~~~--~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~ 195 (207)
.+..+++|.. .+.| ++|+|+|++.+ +++++|||||+|++.++||++|+|||+|++||++|++|++..+++ +|.+
T Consensus 69 ~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~ 146 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQ 146 (155)
T ss_dssp TBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSS
T ss_pred Cccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCC
Confidence 3446888874 3455 89999999975 788999999999999999999999999999999999999887766 9999
Q ss_pred ceEEeeeee
Q 028574 196 KVVVADSGE 204 (207)
Q Consensus 196 ~i~I~~cg~ 204 (207)
+|+|.+||+
T Consensus 147 ~v~I~~cgv 155 (155)
T PF00160_consen 147 DVTISSCGV 155 (155)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEeEC
Confidence 999999996
No 22
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-40 Score=239.75 Aligned_cols=143 Identities=46% Similarity=0.709 Sum_probs=131.6
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|..|+|.||||.+.+|++|+||+.+|.. .||+++.|||-+|+|++|+|++. ..|.|+.++||..+++|.
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~----------~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~ 75 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCAS----------DYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY 75 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhh----------hhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence 5689999999999999999999999943 38999999999999999999988 778999999999999997
Q ss_pred C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC--CCCCcccceEEeee
Q 028574 129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR--QNGTPKSKVVVADS 202 (207)
Q Consensus 129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~--~~~~P~~~i~I~~c 202 (207)
. .++|+.||+|+||++||++++|||||+.+..|+||-+|+|||+|++|+|+||.|+..+- +..+|..++.|.+-
T Consensus 76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 6 58999999999999999999999999999999999999999999999999999997763 33799988887753
No 23
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=284.87 Aligned_cols=143 Identities=50% Similarity=0.828 Sum_probs=135.6
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|.+.||+++||++|+||...| +.+||||..||||+++||||+||+. ++|.||+++||+.++||.
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~----------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedef 479 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHS----------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEF 479 (558)
T ss_pred ecccceEEEecccccchhhhhhhccc----------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhc
Confidence 88999999999999999999999999 5569999999999999999999998 899999999999999998
Q ss_pred C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeee
Q 028574 129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADS 202 (207)
Q Consensus 129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~c 202 (207)
+ .+.|+++-+||||+.|+|++|||||||..+.|+||++|+|||||+.||||+++|+++. +++++|.+++.|.+-
T Consensus 480 h~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini 555 (558)
T KOG0882|consen 480 HPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI 555 (558)
T ss_pred CcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence 7 6999999999999999999999999999999999999999999999999999999665 677999999999874
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=7.9e-38 Score=241.53 Aligned_cols=141 Identities=60% Similarity=0.940 Sum_probs=123.9
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|+|+||||.+.||++|+||++||++ .+|+++.|||++|++++|+|++......+ ..++..+++|.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~ 71 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN 71 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence 6689999999999999999999999943 37999999999999999999987443322 34466788887
Q ss_pred CCCc-cCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCcccceEEee
Q 028574 129 FKLK-HTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKSKVVVAD 201 (207)
Q Consensus 129 ~~~~-h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~~i~I~~ 201 (207)
.... |+++|+|+|++.+++++++||||++++.++||++|+|||||++|||+|++|+..++ ++++|..+|+|.+
T Consensus 72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 7655 78899999999999999999999999999999999999999999999999996664 5899999999974
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-38 Score=243.91 Aligned_cols=163 Identities=67% Similarity=1.163 Sum_probs=155.6
Q ss_pred cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEe---ecCceeEeccCCCCC
Q 028574 36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI---IPSFMLQGGDFTLGD 112 (207)
Q Consensus 36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv---~~~~~iq~G~~~~~~ 112 (207)
.++++|+|+.++++++|+++++||.|..|++++||..||++++|.+ |.++.|||+ +++|++||||.+..+
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence 4689999999999999999999999999999999999999988764 999999993 347999999999999
Q ss_pred CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCC
Q 028574 113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~ 192 (207)
++++.++|++.++||+..++|..+|.|+|++.+|++++|||||++....+||++|+|||+|.+||+++++++....++++
T Consensus 75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk 154 (167)
T KOG0865|consen 75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGK 154 (167)
T ss_pred CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccceEEeeeeee
Q 028574 193 PKSKVVVADSGEL 205 (207)
Q Consensus 193 P~~~i~I~~cg~l 205 (207)
+..+|+|.+||+|
T Consensus 155 ~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 155 TSKKITIADCGQL 167 (167)
T ss_pred ccccEEEecCCcC
Confidence 9999999999986
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.2e-36 Score=241.76 Aligned_cols=128 Identities=33% Similarity=0.510 Sum_probs=106.5
Q ss_pred CeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC-------------
Q 028574 48 GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR------------- 114 (207)
Q Consensus 48 ~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~------------- 114 (207)
.|+.|+|+||||++.||++|+||++|| +.+||+++.||||+++||+|||++...+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p 72 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP 72 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence 378999999999999999999999999 455899999999999999999998633110
Q ss_pred -------CCccccCCCC-----CCCCCCCccCCCcEEEeeecC--CCCCCceEEEecC-------CCCCCCCCccEEEEE
Q 028574 115 -------GGESIYGEKF-----PDENFKLKHTGPGLLSMANAG--PDTNGSQFFITTV-------TTSWLDGRHVVFGKV 173 (207)
Q Consensus 115 -------~~~~~~~~~~-----~~e~~~~~h~~~G~v~~~~~~--~~~~~sqF~I~l~-------~~~~ld~~~~vfG~V 173 (207)
.+.++++..+ .++...+.|+.+|+|+|++.+ +++++|||||+++ +.++||++|+|||||
T Consensus 73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V 152 (176)
T cd01924 73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152 (176)
T ss_pred ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence 1122333332 234455677889999999987 6999999999998 789999999999999
Q ss_pred EeCHHHHHHHHh
Q 028574 174 LSGMDVVYKVEA 185 (207)
Q Consensus 174 i~G~~vld~I~~ 185 (207)
++|||||++|+.
T Consensus 153 veG~dvl~~I~~ 164 (176)
T cd01924 153 TDGLDILRELKV 164 (176)
T ss_pred ecCHHHHHhhcC
Confidence 999999999974
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=249.33 Aligned_cols=147 Identities=42% Similarity=0.643 Sum_probs=136.0
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCC-----
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEK----- 123 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~----- 123 (207)
|++|+|+|+||.+++|.+|.|||+|| |..||+.|.||.|..+|.+|+|||+ ++|.||.++|+.-
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~ 75 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQA 75 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccc
Confidence 88999999999999999999999999 7779999999999999999999998 7899999998633
Q ss_pred --CCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCC-CCCCCCCccEEEEEEeCHHHHHHHH-hCCCCCCCcccceE
Q 028574 124 --FPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVT-TSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVV 198 (207)
Q Consensus 124 --~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~-~~~ld~~~~vfG~Vi~G~~vld~I~-~~~~~~~~P~~~i~ 198 (207)
++.|.. .++|.+.|+|+|++.|.+..||||||||++ ...||++|+|||+|+||||+|.+|+ +..+++++|.++|+
T Consensus 76 rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIR 155 (479)
T KOG0415|consen 76 RFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIR 155 (479)
T ss_pred hhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccccee
Confidence 455644 789999999999999999999999999977 4689999999999999999999998 88999999999999
Q ss_pred Eeeeeeec
Q 028574 199 VADSGELP 206 (207)
Q Consensus 199 I~~cg~l~ 206 (207)
|.+.-+|+
T Consensus 156 I~HTiiLd 163 (479)
T KOG0415|consen 156 IKHTIILD 163 (479)
T ss_pred eeeeEEec
Confidence 99998885
No 28
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=250.30 Aligned_cols=158 Identities=39% Similarity=0.646 Sum_probs=141.7
Q ss_pred cccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCC
Q 028574 32 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111 (207)
Q Consensus 32 ~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~ 111 (207)
.-|+.+.+|.+. |+.|+|.||||+++||++|.||++||. .+||+|+.|||++|+|.+||||++ +
T Consensus 7 ~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~ 70 (439)
T KOG0885|consen 7 LEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-G 70 (439)
T ss_pred cCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-C
Confidence 346777888777 889999999999999999999999994 348999999999999999999998 8
Q ss_pred CCCCCccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe-CHHHHHHHH-hCCC
Q 028574 112 DGRGGESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS-GMDVVYKVE-AEGR 188 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~-G~~vld~I~-~~~~ 188 (207)
+|.||.++||.++.+|.+ ++.++++|+|+||+.+.+.+|||||+||++.|+|++++++||+|+- -+-.+-+|. ...+
T Consensus 71 ~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eid 150 (439)
T KOG0885|consen 71 TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEID 150 (439)
T ss_pred CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccc
Confidence 899999999999999977 5788899999999999999999999999999999999999999993 455566665 4556
Q ss_pred CCCCcccceEEeeeeee
Q 028574 189 QNGTPKSKVVVADSGEL 205 (207)
Q Consensus 189 ~~~~P~~~i~I~~cg~l 205 (207)
.+.+|..+..|.+|-+|
T Consensus 151 a~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 151 ADDRPVDPPKIKSVEVL 167 (439)
T ss_pred cccCCCCccceeeeEee
Confidence 78999999999999987
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00014 Score=64.75 Aligned_cols=139 Identities=22% Similarity=0.275 Sum_probs=106.8
Q ss_pred eEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCcc-cc-CC---CCCC-
Q 028574 53 RIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGES-IY-GE---KFPD- 126 (207)
Q Consensus 53 ~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~-~~-~~---~~~~- 126 (207)
-|.|+++.+-.|.-++-|...| ...++++..|.||...+++|.||.......+|.- .| ++ .+|+
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFC----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred eEEeecccCCCcEEECCcCCcC----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 8999999999999999999999 4458999999999999999999865333222221 11 11 1222
Q ss_pred -CCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH-hCCCCCCCcccceEEeee
Q 028574 127 -ENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADS 202 (207)
Q Consensus 127 -e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~-~~~~~~~~P~~~i~I~~c 202 (207)
.+..++|. .-++..........+-+|.+.-...+-++.+..|||++..|-++++.|+ ...+.+..|+.++.|.+-
T Consensus 183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 23456664 5666666666666678999999999999999999999999999999998 566777889888887653
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.56 E-value=0.017 Score=52.43 Aligned_cols=102 Identities=21% Similarity=0.344 Sum_probs=63.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCCCCC
Q 028574 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKL 131 (207)
Q Consensus 52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 131 (207)
=.+.+||. ..||.++++|+.+...+. + .+.+...-| |. .....+...+.|+...
T Consensus 201 Ty~evE~~-~~~p~s~EH~la~~~~G~----------~---~Vd~~tsTf-i~-----------d~~L~g~~~p~En~~~ 254 (503)
T TIGR03268 201 TYVEVELD-PNAPVSVEHFLALMEDGT----------F---RVDYRTSTF-IS-----------DDSLRGLDKPEENIEK 254 (503)
T ss_pred EEEEEEEc-CCCChhHHHHHHHHhCCe----------E---EEeeeecce-Ee-----------cccccCccCCccccCc
Confidence 35777876 456999999999994321 1 111111111 11 1112234456666543
Q ss_pred ccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH
Q 028574 132 KHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE 184 (207)
Q Consensus 132 ~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~ 184 (207)
..+|+|++.+.|.+ ....||--.+.+ -.-.|+|+|+|+.|||++|--+
T Consensus 255 --R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 255 --RRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred --ccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 35899999987744 346888776655 3346999999999999987543
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.55 E-value=0.015 Score=52.90 Aligned_cols=102 Identities=23% Similarity=0.378 Sum_probs=63.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCCCCC
Q 028574 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKL 131 (207)
Q Consensus 52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 131 (207)
=.+.+||.+ .||.++++|+.+...+. + .+.+...-| |. .....+...+.|+...
T Consensus 204 Ty~eve~~~-~~p~s~EH~la~~~~G~----------f---~Vd~~tstf-I~-----------d~~L~g~~~p~En~~~ 257 (508)
T PRK00969 204 TYVEVELDP-GAPKSVEHFLALLEDGT----------F---EVDFETSTF-IA-----------DDRLQGLKIPEENFEP 257 (508)
T ss_pred EEEEEEEcC-CCCchHHHHHHHHhCCe----------E---EEeeeecce-Ee-----------eccccCccCCccccCc
Confidence 357778775 46999999999994331 1 111111111 11 1112244556666543
Q ss_pred ccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH
Q 028574 132 KHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE 184 (207)
Q Consensus 132 ~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~ 184 (207)
..+|+|++.+.|.+ ....||--.+.+ -.-.|+|+|+|++|||+++--+
T Consensus 258 --R~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 258 --RRRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred --cccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 34899999987754 346888776655 3346999999999999987543
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.018 Score=50.80 Aligned_cols=101 Identities=29% Similarity=0.462 Sum_probs=63.3
Q ss_pred eeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEee--cCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII--PSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 51 ~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
.=.+.+||.++ +|+++++|+.+. ++|. .||. .+-++. ..+.....++.|+
T Consensus 202 fTy~eve~s~n-sP~saEH~lalm--edG~--------------lri~~~tntfis-----------~~~lq~~~~~~en 253 (512)
T COG4070 202 FTYFEVELSRN-SPKSAEHFLALM--EDGT--------------LRIDVTTNTFIS-----------DDTLQEEKVPEEN 253 (512)
T ss_pred EEEEEEEeCCC-CchhHHHHHHHh--hcce--------------EEEEEeccceee-----------ccccccccCChhh
Confidence 34577787754 699999999998 3331 1221 121111 1111234456666
Q ss_pred CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH
Q 028574 129 FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE 184 (207)
Q Consensus 129 ~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~ 184 (207)
.... .+|.++..+.|.+ ...-||.--+.++ --.|.|.|||++|||++|--+
T Consensus 254 ~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 254 FDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred hhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence 5543 4899999887644 3467887655442 236899999999999987544
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.07 E-value=0.072 Score=48.46 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=58.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCCCCC
Q 028574 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKL 131 (207)
Q Consensus 52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 131 (207)
--|.||||.+.||+++..|.+.. |-+-. .-| -..+|=..++-++.-|+... ...+.+|+..-
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~-~VG------~L~v~F~~~d~~mFk~~~~~----------~k~LiPEN~P~ 436 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFT-GLKTK-PVG------RLPVHFAFKEMIMFKGNKEL----------AKGLIPENTPE 436 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhc-CCccc-ccc------eeEEEEEeCCeeEeccCchh----------ccccCCCCCCC
Confidence 35899999999999999999986 11100 001 12333334443333222221 12233343322
Q ss_pred ccCCCcEEEeeecCCCCCCceEEEec------CCCC-CCCCCccEEEEEEeCHHHHHHHHh
Q 028574 132 KHTGPGLLSMANAGPDTNGSQFFITT------VTTS-WLDGRHVVFGKVLSGMDVVYKVEA 185 (207)
Q Consensus 132 ~h~~~G~v~~~~~~~~~~~sqF~I~l------~~~~-~ld~~~~vfG~Vi~G~~vld~I~~ 185 (207)
....+|.+++-|...... .-.-|-+ +|.. .+++. -++|+|++++|.|.++..
T Consensus 437 ~~V~ag~IgvTN~a~k~~-G~IGVRl~d~defGPTGE~F~gT-NIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHV-GMIGVRLEDSDEFGPTGEPFSGT-NIIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcC-ceEEEEccCCcccCCCCCCccCc-ceEEEecCChhHhccccc
Confidence 233466666655321100 0112222 2222 34443 567999999999988763
No 34
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.99 E-value=0.039 Score=42.54 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=57.4
Q ss_pred eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCc--eeEeccCCCCCCCCCccccCCCCCCCCC
Q 028574 52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSF--MLQGGDFTLGDGRGGESIYGEKFPDENF 129 (207)
Q Consensus 52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 129 (207)
-.++.+|..|.||+||+.|.+.- =|.+..+|-...+. |+.-++.. ....+.||.
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~ 63 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENH 63 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SE
T ss_pred eEEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcC
Confidence 36889999999999999999988 27777777776553 55555533 012234554
Q ss_pred CCccCCCcEEEeee---cCC--CCC-CceEEEecCCCCC-CCC-----CccEEEEEEeCHHHHHHHH
Q 028574 130 KLKHTGPGLLSMAN---AGP--DTN-GSQFFITTVTTSW-LDG-----RHVVFGKVLSGMDVVYKVE 184 (207)
Q Consensus 130 ~~~h~~~G~v~~~~---~~~--~~~-~sqF~I~l~~~~~-ld~-----~~~vfG~Vi~G~~vld~I~ 184 (207)
... -.+|-|.+.- ... +.. -++.-|.++...- +.+ --.+|++|++|+|-|.++-
T Consensus 64 T~~-P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~ 129 (147)
T PF12903_consen 64 TVT-PIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEAC 129 (147)
T ss_dssp ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHH
T ss_pred ccc-CCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHH
Confidence 332 2468777761 111 111 1344444333221 111 1379999999999887775
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.067 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCchhHHHHHHHh
Q 028574 53 RIVMGLFGKAVPKTAENFRALC 74 (207)
Q Consensus 53 ~ivieL~~~~aP~~~~nF~~l~ 74 (207)
-|.||||.+.||.++..|.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 4899999999999999999886
No 36
>PRK00969 hypothetical protein; Provisional
Probab=93.37 E-value=0.56 Score=42.92 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=65.6
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 128 (207)
|+.|.|+|||. .+..++.-+++... -|.|...+=--+ .-+..|-+. ..++.+.
T Consensus 57 TtkG~i~Iel~--~~~~~~~~w~e~yk------------~~e~~~i~W~s~-~~vAfGp~~------------s~l~p~~ 109 (508)
T PRK00969 57 TTKGEIVIELT--EENESVDFWLENYK------------EFEGKSLRWTSR-SAVAFGPFE------------SDLEPSR 109 (508)
T ss_pred ccCceEEEEEc--cCcchhhHHHHhHH------------hhcCCceEeccc-cceeEcccc------------cCccccc
Confidence 78999999999 44556777777662 144544433322 233333221 1121111
Q ss_pred CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCC--CccEEEEEEeCHHHHHHHHh
Q 028574 129 FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDG--RHVVFGKVLSGMDVVYKVEA 185 (207)
Q Consensus 129 ~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~--~~~vfG~Vi~G~~vld~I~~ 185 (207)
.. ....++-|.+.-+|-+...+.+.|+..+....-+ .--+||+|+.|..+|+++..
T Consensus 110 ~~-~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 110 EE-YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred Cc-ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 11 1235788888887766666777777655432111 11799999999999999974
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.81 E-value=0.19 Score=35.95 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=13.0
Q ss_pred CCcCchHHHHHHHHHHHHhhcch
Q 028574 1 MASTNLLPLTMLWAIVLLATFSS 23 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (207)
|.|..+++|.+++|++|+.++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 66666666666665555544433
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=83.21 E-value=7.4 Score=28.81 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCCcEEEeeecCCCCCCceEEEecCCCC-------CCCCCccEEEEEEeCHHHHHHHH
Q 028574 134 TGPGLLSMANAGPDTNGSQFFITTVTTS-------WLDGRHVVFGKVLSGMDVVYKVE 184 (207)
Q Consensus 134 ~~~G~v~~~~~~~~~~~sqF~I~l~~~~-------~ld~~~~vfG~Vi~G~~vld~I~ 184 (207)
...|.++.-..+.+ |.|-+++.| .+-....++|||.+|.+.+.++.
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~ 112 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK 112 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence 35788887654433 778777774 34456899999999999988886
No 39
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=52.66 E-value=11 Score=20.04 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=7.6
Q ss_pred chHHHHHHHHHHHHhh
Q 028574 5 NLLPLTMLWAIVLLAT 20 (207)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (207)
|++++++++++.+++|
T Consensus 8 Kkil~~l~a~~~LagC 23 (25)
T PF08139_consen 8 KKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4455444444444444
No 40
>PRK10449 heat-inducible protein; Provisional
Probab=50.41 E-value=34 Score=25.93 Aligned_cols=45 Identities=11% Similarity=0.193 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHHhhcchhhcccccccccccCceEEEEEEECCeee
Q 028574 4 TNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPA 51 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~t~~ 51 (207)
||++++++++++++++|.+.... ..+...+...-|.-.+++|.+.
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~~---~~~~~~L~~~~W~L~~i~G~~~ 45 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKI---SVTPEQLQHHRFVLESVNGKPV 45 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCC---CcCHHHcCCceEEEEEECCEEc
Confidence 45666555555555554443221 1122345555565556665443
No 41
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=50.19 E-value=9.2 Score=18.70 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=7.6
Q ss_pred CchHHHHHHHHHH
Q 028574 4 TNLLPLTMLWAIV 16 (207)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (207)
||+.+++++++++
T Consensus 2 Mk~vIIlvvLLli 14 (19)
T PF13956_consen 2 MKLVIILVVLLLI 14 (19)
T ss_pred ceehHHHHHHHhc
Confidence 5666665555544
No 42
>PF15284 PAGK: Phage-encoded virulence factor
Probab=45.30 E-value=21 Score=23.27 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=10.4
Q ss_pred CchHHHHHHHHHHHHhhcchhhcc
Q 028574 4 TNLLPLTMLWAIVLLATFSSIQAK 27 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (207)
.+-+++.+++++.+.+..+++.++
T Consensus 4 ~ksifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333444444444444444444444
No 43
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=42.33 E-value=53 Score=23.79 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=23.4
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeec
Q 028574 49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99 (207)
Q Consensus 49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~ 99 (207)
...|.|.+.. .-.|..+++=+.-=... .|-..|||+-
T Consensus 49 q~iGtVSvs~--~gsp~d~~~~La~KAda------------~GA~yYrIi~ 85 (104)
T PRK14864 49 QKMGTVSALV--RGSPDDAEREIQAKANA------------AGADYYVIVM 85 (104)
T ss_pred ceeeEEEEec--CCCHHHHHHHHHHHHHH------------cCCCEEEEEE
Confidence 5679888773 55788777665543323 3456677753
No 44
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=42.01 E-value=49 Score=26.15 Aligned_cols=57 Identities=16% Similarity=0.043 Sum_probs=26.6
Q ss_pred CCcCchHHHHHHHHHHHHhhcchhhcccccccccccCceEEEEEE--ECCeeeeeEEEE
Q 028574 1 MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVE--IAGKPAGRIVMG 57 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~--~~~t~~G~ivie 57 (207)
|++.|.+++++++++++...+...-...-..+...--+.-...+. ...-..|++|+=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~pig~y~~~~~~~~~~rGDiVvf 59 (176)
T PRK13838 1 MRRRRALLLLAVAAVAASGLAATAWIGGYRINLTPSEPLGLWRIEALDRPVAVGDLVFI 59 (176)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHCceEEECCCCCEEEEEEEeccCCCCCCCcEEEE
Confidence 666677666665555554443333322222222222222222222 123467999984
No 45
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=36.42 E-value=37 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=19.8
Q ss_pred EeCHHHHHHHHhCCCCCCCcccceEEee
Q 028574 174 LSGMDVVYKVEAEGRQNGTPKSKVVVAD 201 (207)
Q Consensus 174 i~G~~vld~I~~~~~~~~~P~~~i~I~~ 201 (207)
++|.||++++... .....+.-||++++
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeC
Confidence 5799999999976 44556666777665
No 46
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=36.28 E-value=71 Score=20.68 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=4.8
Q ss_pred eeEEEEEeC
Q 028574 52 GRIVMGLFG 60 (207)
Q Consensus 52 G~ivieL~~ 60 (207)
-.|.|.+..
T Consensus 39 heI~vkvDk 47 (59)
T PF13617_consen 39 HEIRVKVDK 47 (59)
T ss_pred EEEEEEhHH
Confidence 445666553
No 47
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=35.64 E-value=1e+02 Score=30.35 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.4
Q ss_pred CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHh
Q 028574 37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALC 74 (207)
Q Consensus 37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~ 74 (207)
..+..+||.+|+...|+..|+...+..|+....+++..
T Consensus 59 pG~Y~v~v~vNg~~~~~~~v~f~~~~~pclt~~~L~~~ 96 (801)
T PRK15304 59 PGSHSVMVKINGKKRGSLAARFDEEGQLCVDDDFLQAA 96 (801)
T ss_pred CeEeEEEEEECCeEcccEEEEECCCCccccCHHHHHhc
Confidence 34445899999999998877765456687777777665
No 48
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=35.10 E-value=21 Score=31.57 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=33.5
Q ss_pred CCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe-CHHHHHHHH
Q 028574 134 TGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS-GMDVVYKVE 184 (207)
Q Consensus 134 ~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~-G~~vld~I~ 184 (207)
..+|.|.+.+.....-..|.=|++.+.|. |++..|+|+|.+ -+.+|+-|.
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 35899999987655566789999999985 888999999995 578888876
No 49
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=35.01 E-value=43 Score=20.79 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=20.5
Q ss_pred CceEEEEEEECCeeeeeEEEEEeCCCCchhH
Q 028574 37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTA 67 (207)
Q Consensus 37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~ 67 (207)
...+.+.+-.+| -||+||||..++|-...
T Consensus 16 gR~ivmRvPleG--GGRLVvEl~~~Ea~~L~ 44 (51)
T PF11314_consen 16 GRGIVMRVPLEG--GGRLVVELNPDEAKELG 44 (51)
T ss_pred CceEEEEEecCC--CcEEEEEeCHHHHHHHH
Confidence 345666766654 59999999988875443
No 50
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=29.69 E-value=88 Score=23.25 Aligned_cols=21 Identities=24% Similarity=0.108 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHHhhcchh
Q 028574 4 TNLLPLTMLWAIVLLATFSSI 24 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (207)
||++.++.+.++++.+|.++.
T Consensus 1 Mrk~~~~~l~~~lLvGCsS~~ 21 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSSHQ 21 (123)
T ss_pred CceehHHHHHHHHhhccCCCC
Confidence 445555444444444544443
No 51
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=29.27 E-value=1e+02 Score=30.72 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=22.9
Q ss_pred ccCceEEEEEEECCeeeeeEEEEEeCCC
Q 028574 35 EITNKVYFDVEIAGKPAGRIVMGLFGKA 62 (207)
Q Consensus 35 ~~~~~~~~di~~~~t~~G~ivieL~~~~ 62 (207)
...+..+++|...|.++|...|.|..|.
T Consensus 32 ~~gq~e~vdV~l~G~~LG~~~v~l~~dt 59 (895)
T PRK15310 32 LEGQTEQIEVLLPGHSLGLFPVVVKPDT 59 (895)
T ss_pred hCCCceEEEEEECCEEceeeEEEEcCCc
Confidence 3456678999999999999888888775
No 52
>PF15240 Pro-rich: Proline-rich
Probab=28.55 E-value=35 Score=27.22 Aligned_cols=9 Identities=33% Similarity=0.379 Sum_probs=3.8
Q ss_pred cchhhcccc
Q 028574 21 FSSIQAKKS 29 (207)
Q Consensus 21 ~~~~~~~~~ 29 (207)
+|||.+...
T Consensus 13 LSSAQ~~dE 21 (179)
T PF15240_consen 13 LSSAQSTDE 21 (179)
T ss_pred hhhcccccc
Confidence 444444433
No 53
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=27.88 E-value=52 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHhhcchhhcc
Q 028574 5 NLLPLTMLWAIVLLATFSSIQAK 27 (207)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (207)
.=.+|.+|+.+.|+++++....+
T Consensus 3 tcRLLCalLvlaLcCCpsvc~t~ 25 (143)
T PF01456_consen 3 TCRLLCALLVLALCCCPSVCATA 25 (143)
T ss_pred hHHHHHHHHHHHHHcCcchhccc
Confidence 33445555555556666655533
No 54
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=27.38 E-value=45 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHhhcchh
Q 028574 4 TNLLPLTMLWAIVLLATFSSI 24 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (207)
||++++...+++++.+|++..
T Consensus 1 mKk~ll~~~lallLtgCatqt 21 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQT 21 (97)
T ss_pred CcHHHHHHHHHHHHcccceeE
Confidence 677777777776665555443
No 55
>PRK11627 hypothetical protein; Provisional
Probab=27.35 E-value=48 Score=26.68 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHHhhcch
Q 028574 4 TNLLPLTMLWAIVLLATFSS 23 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (207)
+|++++.+++++++++|+++
T Consensus 2 lkklll~l~a~~~L~gCA~~ 21 (192)
T PRK11627 2 LKKILFPLVALFMLAGCATP 21 (192)
T ss_pred hHHHHHHHHHHHHHHhhcCC
Confidence 45555545545555555544
No 56
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=25.98 E-value=66 Score=19.94 Aligned_cols=10 Identities=0% Similarity=-0.150 Sum_probs=4.3
Q ss_pred CchHHHHHHH
Q 028574 4 TNLLPLTMLW 13 (207)
Q Consensus 4 ~~~~~~~~~~ 13 (207)
||..+.++++
T Consensus 2 mKk~i~~i~~ 11 (48)
T PRK10081 2 VKKTIAAIFS 11 (48)
T ss_pred hHHHHHHHHH
Confidence 4444444333
No 57
>PRK09810 entericidin A; Provisional
Probab=25.58 E-value=71 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=5.2
Q ss_pred CchHHHHHHHHH
Q 028574 4 TNLLPLTMLWAI 15 (207)
Q Consensus 4 ~~~~~~~~~~~~ 15 (207)
||++++++++++
T Consensus 2 Mkk~~~l~~~~~ 13 (41)
T PRK09810 2 MKRLIVLVLLAS 13 (41)
T ss_pred hHHHHHHHHHHH
Confidence 444444444333
No 58
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=25.57 E-value=80 Score=20.73 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=18.7
Q ss_pred CCCCccEEEEEEeCHHHHHHHH-hCCCCCCC
Q 028574 163 LDGRHVVFGKVLSGMDVVYKVE-AEGRQNGT 192 (207)
Q Consensus 163 ld~~~~vfG~Vi~G~~vld~I~-~~~~~~~~ 192 (207)
+|..-.++|||++| -+.+|. ...++++.
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~ 44 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGD 44 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCC
Confidence 45566899999999 455565 44455543
No 59
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=25.18 E-value=1.4e+02 Score=25.03 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEeC----CCCchhHHHHHHHhcC
Q 028574 54 IVMGLFG----KAVPKTAENFRALCTG 76 (207)
Q Consensus 54 ivieL~~----~~aP~~~~nF~~l~~~ 76 (207)
-|+|||. ..||..=++|.+++..
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~ 69 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADD 69 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccC
Confidence 5677875 4799999999999954
No 60
>PRK13791 lysozyme inhibitor; Provisional
Probab=24.85 E-value=1.2e+02 Score=22.27 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=9.1
Q ss_pred CCcCchHHHHHHHHH
Q 028574 1 MASTNLLPLTMLWAI 15 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (207)
|+.||.+++..+.++
T Consensus 1 ~~~mk~~~~~~~~~~ 15 (113)
T PRK13791 1 MMKRKLIPFTLFLAA 15 (113)
T ss_pred CchHHHHHHHHHHHH
Confidence 567777665554444
No 61
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=23.80 E-value=53 Score=27.15 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=12.9
Q ss_pred CCcCchHHHHHHHHHHHHhh
Q 028574 1 MASTNLLPLTMLWAIVLLAT 20 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (207)
|++|+.+++++++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~lsgC 20 (243)
T PRK10866 1 MTRMKYLVAAATLSLFLAGC 20 (243)
T ss_pred CchHHHHHHHHHHHHHHhhc
Confidence 77777777766555554444
No 62
>COG5510 Predicted small secreted protein [Function unknown]
Probab=22.81 E-value=48 Score=20.08 Aligned_cols=14 Identities=43% Similarity=0.368 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhh
Q 028574 7 LPLTMLWAIVLLAT 20 (207)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (207)
++++++++.++.+.
T Consensus 8 ~i~~vll~s~llaa 21 (44)
T COG5510 8 LIALVLLASTLLAA 21 (44)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 63
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=22.27 E-value=1.3e+02 Score=26.72 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=16.7
Q ss_pred cccCceEEEEEEECCeeeeeEEEE
Q 028574 34 KEITNKVYFDVEIAGKPAGRIVMG 57 (207)
Q Consensus 34 ~~~~~~~~~di~~~~t~~G~ivie 57 (207)
-...+-.|..++ ++-.|+++|.
T Consensus 29 lqa~pgd~~~i~--g~~~g~~vIn 50 (408)
T COG3420 29 LQAKPGDYYGIS--GRYAGNFVIN 50 (408)
T ss_pred cccCCCcEEEEe--eeecccEEEc
Confidence 346677788877 6888988886
No 64
>PRK11372 lysozyme inhibitor; Provisional
Probab=21.97 E-value=86 Score=22.80 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=8.6
Q ss_pred CcCchHHHHHHHHH
Q 028574 2 ASTNLLPLTMLWAI 15 (207)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (207)
++||.++++++.++
T Consensus 1 ~~mk~ll~~~~~~l 14 (109)
T PRK11372 1 MSMKKLLIICLPVL 14 (109)
T ss_pred CchHHHHHHHHHHH
Confidence 47888665555444
No 65
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=21.82 E-value=81 Score=28.30 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHhhcchhhc
Q 028574 6 LLPLTMLWAIVLLATFSSIQA 26 (207)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (207)
+++++++..++++.++---+.
T Consensus 363 LLIFFlfIgviLFsSavYFAE 383 (507)
T KOG1545|consen 363 LLIFFLFIGVILFSSAVYFAE 383 (507)
T ss_pred HHHHHHHHHHHHHhceeeeee
Confidence 344444444555544443333
No 66
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=3.8e+02 Score=20.56 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=19.2
Q ss_pred eeeeeEEEEEeCCCC--ch-hHHHHHHHhcCC
Q 028574 49 KPAGRIVMGLFGKAV--PK-TAENFRALCTGE 77 (207)
Q Consensus 49 t~~G~ivieL~~~~a--P~-~~~nF~~l~~~~ 77 (207)
...|.|-+.+|.+.. |. --.+|-+-|+.-
T Consensus 41 nkqGqic~aVf~s~qgfp~~~~~~f~ractsi 72 (151)
T COG4704 41 NKQGQICFAVFASEQGFPMSDPSRFQRACTSI 72 (151)
T ss_pred hccCcEEEEEEeccccCCCCCchHHhhhcccc
Confidence 457999999998753 21 135677777543
No 67
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=21.51 E-value=1.5e+02 Score=23.11 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=29.5
Q ss_pred EEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeec
Q 028574 54 IVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99 (207)
Q Consensus 54 ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~ 99 (207)
+.|-||.-+-|..+.|.+++| .-.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~c-------------a~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTC-------------AATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHH-------------HhcCCeEEEEcc
Confidence 678899999999999999999 477899999976
No 68
>PRK15396 murein lipoprotein; Provisional
Probab=21.02 E-value=89 Score=21.41 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=11.6
Q ss_pred CCcCchHHHHHHHHHHH-Hhhcc
Q 028574 1 MASTNLLPLTMLWAIVL-LATFS 22 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~ 22 (207)
|.+.++++..+.+++++ .+|++
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSS 23 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCC
Confidence 55555666666665544 44443
No 69
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=20.85 E-value=3.3e+02 Score=27.00 Aligned_cols=38 Identities=5% Similarity=-0.017 Sum_probs=27.8
Q ss_pred CceEEEEEEECCeeeeeEEEEEeCC-CCchhHHHHHHHh
Q 028574 37 TNKVYFDVEIAGKPAGRIVMGLFGK-AVPKTAENFRALC 74 (207)
Q Consensus 37 ~~~~~~di~~~~t~~G~ivieL~~~-~aP~~~~nF~~l~ 74 (207)
..+..+||.+|+...|+..|....+ ..|+-...+++..
T Consensus 53 pG~Y~v~i~vNg~~~~~~~i~f~~~~~~~Clt~~~L~~~ 91 (826)
T PRK15217 53 PGQYEIDIYVNKQWRGKYEIIVKDNPQETCLSRELIKRL 91 (826)
T ss_pred CeEEEEEEEECCeEcccEEEEEeCCCcceEcCHHHHHHc
Confidence 4556689999999999887776433 3477777777665
No 70
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=20.29 E-value=77 Score=24.58 Aligned_cols=18 Identities=22% Similarity=0.122 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHhhc
Q 028574 4 TNLLPLTMLWAIVLLATF 21 (207)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (207)
||+++++.+++++++.|+
T Consensus 1 Mrk~l~~~~l~l~LaGCA 18 (151)
T PRK13883 1 MRKIVLLALLALALGGCA 18 (151)
T ss_pred ChhHHHHHHHHHHHhccc
Confidence 566666666666655554
No 71
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=20.02 E-value=3.2e+02 Score=20.38 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=16.3
Q ss_pred CCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecC
Q 028574 62 AVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPS 100 (207)
Q Consensus 62 ~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~ 100 (207)
..+...+..++++ -+.|.++|.+++
T Consensus 105 ~~~e~~~rll~~A--------------~k~CpVs~sl~~ 129 (135)
T TIGR03562 105 IDEAKFQEIAEKA--------------KEGCPVSKALAA 129 (135)
T ss_pred CCHHHHHHHHHHH--------------HhhCcHhHhcCC
Confidence 6667777777777 445666666554
Done!