Query 028575
Match_columns 207
No_of_seqs 165 out of 773
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 13:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 9.9E-36 2.2E-40 265.2 10.4 97 110-206 28-124 (302)
2 COG0861 TerC Membrane protein 99.7 1.9E-18 4E-23 151.1 7.1 75 131-207 2-78 (254)
3 TIGR03717 R_switched_YjbE inte 99.3 6.4E-12 1.4E-16 104.3 6.9 57 148-206 3-59 (176)
4 PRK14013 hypothetical protein; 98.7 6.6E-08 1.4E-12 88.9 9.7 82 118-204 6-88 (338)
5 COG2899 Uncharacterized protei 98.0 1.9E-05 4.1E-10 72.7 8.5 87 114-202 3-93 (346)
6 PF03741 TerC: Integral membra 97.8 3.2E-05 6.9E-10 64.8 4.9 24 148-171 1-24 (183)
7 PF06541 DUF1113: Protein of u 67.7 9.2 0.0002 31.2 4.2 47 143-196 70-121 (157)
8 PRK10755 sensor protein BasS/P 53.5 1.2E+02 0.0027 25.8 8.8 35 112-146 2-36 (356)
9 PRK04375 protoheme IX farnesyl 52.3 94 0.002 27.5 8.1 24 109-132 85-108 (296)
10 TIGR00427 membrane protein, Ma 50.8 36 0.00078 29.1 5.1 47 158-206 20-66 (201)
11 PF10734 DUF2523: Protein of u 47.1 1.1E+02 0.0024 22.3 7.5 73 115-197 8-80 (83)
12 TIGR01937 nqrB NADH:ubiquinone 45.7 1.2E+02 0.0026 29.5 8.2 49 143-193 125-181 (413)
13 PRK05702 flhB flagellar biosyn 43.8 2.7E+02 0.0058 26.2 10.0 34 88-122 5-38 (359)
14 PRK10739 putative antibiotic t 43.2 57 0.0012 28.0 5.2 47 158-206 17-63 (197)
15 PRK10995 inner membrane protei 42.6 57 0.0012 28.0 5.1 47 158-206 21-67 (221)
16 PRK09573 (S)-2,3-di-O-geranylg 41.2 1.7E+02 0.0036 25.5 7.8 26 109-134 76-101 (279)
17 KOG2348 Urea transporter [Amin 39.1 35 0.00076 34.6 3.7 44 111-154 547-594 (667)
18 PF01914 MarC: MarC family int 38.9 76 0.0016 27.1 5.2 47 158-206 17-63 (203)
19 PRK11111 hypothetical protein; 37.7 74 0.0016 27.6 5.1 47 158-206 23-69 (214)
20 KOG4564 Adenylate cyclase-coup 37.7 86 0.0019 30.9 6.0 50 150-203 150-202 (473)
21 PF12596 Tnp_P_element_C: 87kD 37.6 24 0.00052 28.4 1.9 16 141-156 75-90 (106)
22 PRK05951 ubiA prenyltransferas 37.2 1.2E+02 0.0026 26.9 6.4 32 109-140 84-115 (296)
23 COG2095 MarC Multiple antibiot 36.5 72 0.0016 27.7 4.8 47 158-206 20-66 (203)
24 PRK12887 ubiA tocopherol phyty 33.1 2.8E+02 0.0062 25.0 8.2 23 110-132 93-115 (308)
25 COG3329 Predicted permease [Ge 32.0 1.8E+02 0.0039 28.1 6.9 116 64-202 176-298 (372)
26 PRK12884 ubiA prenyltransferas 31.1 1.2E+02 0.0025 26.1 5.2 27 109-135 76-102 (279)
27 PLN02878 homogentisate phytylt 30.1 4.4E+02 0.0096 24.3 10.4 38 92-135 51-88 (280)
28 PRK12883 ubiA prenyltransferas 29.3 2.9E+02 0.0064 23.9 7.4 24 109-132 76-99 (277)
29 PHA02513 V1 structural protein 28.7 48 0.001 27.8 2.3 19 188-206 67-85 (135)
30 KOG3533 Inositol 1,4,5-trispho 28.6 50 0.0011 37.6 3.0 80 105-198 2234-2328(2706)
31 PRK05349 Na(+)-translocating N 28.0 2.9E+02 0.0063 26.9 7.7 49 144-193 125-180 (405)
32 COG3763 Uncharacterized protei 27.8 55 0.0012 25.0 2.3 20 119-138 4-23 (71)
33 PRK12869 ubiA protoheme IX far 27.7 1.1E+02 0.0025 26.7 4.7 24 109-132 77-100 (279)
34 COG1292 BetT Choline-glycine b 26.5 2.5E+02 0.0054 28.4 7.2 82 109-192 128-243 (537)
35 COG1971 Predicted membrane pro 25.2 4.4E+02 0.0095 23.2 7.7 62 122-186 69-143 (190)
36 PRK12882 ubiA prenyltransferas 25.1 1.2E+02 0.0027 26.2 4.3 25 109-133 77-101 (276)
37 PF14029 DUF4244: Protein of u 24.2 1.4E+02 0.003 21.6 3.8 36 122-158 21-56 (56)
38 PRK10649 hypothetical protein; 23.7 4.6E+02 0.0099 25.9 8.4 18 110-127 42-59 (577)
39 PRK13741 conjugal transfer ent 22.6 3.8E+02 0.0082 23.4 6.8 69 119-188 28-103 (171)
40 PF12349 Sterol-sensing: Stero 21.7 3.6E+02 0.0078 21.7 6.2 51 121-171 12-63 (153)
41 PRK07566 bacteriochlorophyll/c 21.4 5.6E+02 0.012 23.0 7.9 26 109-134 104-129 (314)
42 PRK12895 ubiA prenyltransferas 21.1 1.7E+02 0.0037 26.4 4.5 22 109-130 78-99 (286)
43 PRK06080 1,4-dihydroxy-2-napht 20.7 5.6E+02 0.012 22.2 9.6 29 109-137 81-109 (293)
44 PRK10920 putative uroporphyrin 20.4 1.3E+02 0.0028 28.8 3.8 24 115-138 34-57 (390)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=9.9e-36 Score=265.24 Aligned_cols=97 Identities=52% Similarity=0.802 Sum_probs=95.2
Q ss_pred cchhHHHHhHHHHHHHHHHHHhhhhhhheeCchhhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHHHHH
Q 028575 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (207)
Q Consensus 110 ~~~s~KeAl~ws~~wV~LAllFg~~I~~~~G~~~a~EFfTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlG 189 (207)
.++++|||+.||++|+++|++||+++|++.|.+++.||+|||++|++||+||+|||++||++|++|+++|||||+|||+|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 028575 190 AIVFRLSLILLGTATLQ 206 (207)
Q Consensus 190 ALVfR~IFI~lGaaLI~ 206 (207)
|++||++||++|+++++
T Consensus 108 AlvlR~i~i~~g~~Li~ 124 (302)
T TIGR03718 108 ALVLRAIFIALGAALIE 124 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999984
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.9e-18 Score=151.12 Aligned_cols=75 Identities=28% Similarity=0.405 Sum_probs=68.4
Q ss_pred hhhhhhheeCchhhH--HHHHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 028575 131 FGLGVGFIEGASKAS--EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQV 207 (207)
Q Consensus 131 Fg~~I~~~~G~~~a~--EFfTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~~ 207 (207)
|+...|+..+.+.+. +|+|+|++|++||+||+||++++++ +.|+++|||+++||+.||++||++|++.|+++++.
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~--~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l 78 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILAS--KLPPKQRKKALFIGLAGALVLRIILLASISWLLTL 78 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777666 9999999999999999999999999 66699999999999999999999999999999863
No 3
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=99.29 E-value=6.4e-12 Score=104.26 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 148 fTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
++--++|-.||+||++|+.++ ..++|+++|+|+++||+++|+++|.+|+++|.++++
T Consensus 3 ~~li~le~vLs~DN~~vi~~~--t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~ 59 (176)
T TIGR03717 3 LQIIAIDLVLGGDNAVVIALA--ARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA 59 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999999996 459999999999999999999999999999999875
No 4
>PRK14013 hypothetical protein; Provisional
Probab=98.72 E-value=6.6e-08 Score=88.87 Aligned_cols=82 Identities=27% Similarity=0.245 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHhhhhhhheeCchhhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHH-HHHHH
Q 028575 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLS 196 (207)
Q Consensus 118 l~ws~~wV~LAllFg~~I~~~~G~~~a~EFfTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGAL-VfR~I 196 (207)
.+|+.++..++++-+.++++ .+.....++--++|-+||+||..|-+.+.+ +.|++.|+|.|.|||+.|. .||.+
T Consensus 6 f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgmRlv 80 (338)
T PRK14013 6 FRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGMRLV 80 (338)
T ss_pred HhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777666555542 466667777888999999999999999999 9999999999999999997 99999
Q ss_pred HHHHhhhh
Q 028575 197 LILLGTAT 204 (207)
Q Consensus 197 FI~lGaaL 204 (207)
|-++=+++
T Consensus 81 fp~~iv~i 88 (338)
T PRK14013 81 FPLLIVAV 88 (338)
T ss_pred HHHHHHHH
Confidence 98776654
No 5
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=1.9e-05 Score=72.74 Aligned_cols=87 Identities=28% Similarity=0.314 Sum_probs=70.0
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhhheeCchhhHHHHHH---HHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHHHHHH
Q 028575 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAG---YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA 190 (207)
Q Consensus 114 ~KeAl~ws~~wV~LAllFg~~I~~~~G~~~a~EFfTG---YLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGA 190 (207)
..+-..|+..--.++++-++|..|..|......++-. -++|-|||.||..|=+-|.+ ...+..|||-|.|||+.|
T Consensus 3 ~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk--~MS~~Wqk~FLT~GIlIA 80 (346)
T COG2899 3 AFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILK--DMSPFWQKRFLTWGILIA 80 (346)
T ss_pred hHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHH--hccHHHHHHHHHHHHHHH
Confidence 3455678899899999999998887766555444433 35899999999999999999 788999999999999988
Q ss_pred H-HHHHHHHHHhh
Q 028575 191 I-VFRLSLILLGT 202 (207)
Q Consensus 191 L-VfR~IFI~lGa 202 (207)
. -||.+|=++=+
T Consensus 81 VFGMRlvFPl~IV 93 (346)
T COG2899 81 VFGMRLVFPLVIV 93 (346)
T ss_pred HHhhHHHHHHHHH
Confidence 6 48999865543
No 6
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.79 E-value=3.2e-05 Score=64.75 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhc
Q 028575 148 FAGYILEQSLSVDNLFVFVLIFKY 171 (207)
Q Consensus 148 fTGYLiEkSLSVDNLFVF~lIFs~ 171 (207)
+|+|++|++||+||++|+.+++++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~ 24 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK 24 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC
Confidence 589999999999999999999995
No 7
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=67.70 E-value=9.2 Score=31.23 Aligned_cols=47 Identities=28% Similarity=0.571 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhh-----HHHHHHHHHHHHHHH
Q 028575 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR-----VLSYGIAGAIVFRLS 196 (207)
Q Consensus 143 ~a~EFfTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhR-----VLf~GIlGALVfR~I 196 (207)
.+.||+||+++|+.+... .-.|=+.|-..|-| .++||++|-+..|.+
T Consensus 70 t~lEyi~g~~le~~~~~~-------~WDYS~~~~n~~G~Icl~~s~~wg~l~~~~~~~i 121 (157)
T PF06541_consen 70 TALEYITGWILEKLFGAR-------WWDYSDLPFNIQGRICLPFSLFWGLLGLLFVKVI 121 (157)
T ss_pred HHHHHHHHHHHHHHHCCc-------cCcCCCCcCCcCCEehHHHHHHHHHHHHHHHHHH
Confidence 378999999999976543 23444556666555 577888888777765
No 8
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=53.47 E-value=1.2e+02 Score=25.85 Aligned_cols=35 Identities=3% Similarity=-0.178 Sum_probs=26.8
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhhheeCchhhHH
Q 028575 112 ESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASE 146 (207)
Q Consensus 112 ~s~KeAl~ws~~wV~LAllFg~~I~~~~G~~~a~E 146 (207)
+++|+-+.|.++++.+..++...+|++.......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (356)
T PRK10755 2 ISLRRRLLLTIGLILLVFQLISVFWLWHESTEQIQ 36 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 57899999999999987777777777665544333
No 9
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=52.32 E-value=94 Score=27.49 Aligned_cols=24 Identities=13% Similarity=-0.112 Sum_probs=19.9
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg 132 (207)
+.+++.|||..+.+++..++++.+
T Consensus 85 sG~is~~~a~~~~~~l~~~g~~l~ 108 (296)
T PRK04375 85 TGRISPREALIFGLVLGVLGFLLL 108 (296)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 568999999999988887777664
No 10
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=50.75 E-value=36 Score=29.05 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 158 SVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
-+.|+-+|+-+-+ +.+++.|+|+.....+-|.+.=.+|.+.|-.+++
T Consensus 20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~ 66 (201)
T TIGR00427 20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILK 66 (201)
T ss_pred cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999998 7899999999999999999888899999987764
No 11
>PF10734 DUF2523: Protein of unknown function (DUF2523); InterPro: IPR019670 This entry represents a family of phage-related proteins whose function is uncharacterised.
Probab=47.14 E-value=1.1e+02 Score=22.32 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=42.5
Q ss_pred HHHhHHHHHHHHHHHHhhhhhhheeCchhhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH
Q 028575 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFR 194 (207)
Q Consensus 115 KeAl~ws~~wV~LAllFg~~I~~~~G~~~a~EFfTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR 194 (207)
+..+.|.+.-+..|+.|+...+ .|-+...+.+-.|+..+.=+++- -.+-++..+++|+. |-+ |++|+.+|
T Consensus 8 ~~l~~~~v~~~L~alg~~~vt~--~~~~~~~~~~~~~~~s~~~~lp~--~v~~~l~~~gi~~a-----l~i-I~sA~~~r 77 (83)
T PF10734_consen 8 ADLFKSLVGRVLVALGFGLVTY--TGLDALLDQIISYIQSYFGGLPS--DVLQILGLFGIGQA-----LNI-ILSAIAFR 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHhCccHH-----HHH-HHHHHHHH
Confidence 4445555666666666655444 35555555555555555444443 23445556677743 333 78999999
Q ss_pred HHH
Q 028575 195 LSL 197 (207)
Q Consensus 195 ~IF 197 (207)
..+
T Consensus 78 ~~l 80 (83)
T PF10734_consen 78 FTL 80 (83)
T ss_pred HHH
Confidence 876
No 12
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=45.70 E-value=1.2e+02 Score=29.49 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHH--------hhhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHH
Q 028575 143 KASEFFAGYILEQS--------LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (207)
Q Consensus 143 ~a~EFfTGYLiEkS--------LSVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVf 193 (207)
.+.-+.+|.+.|.. .+ |...|-.+++. +.+|..----+...|.+-|+++
T Consensus 125 ~~vs~~~a~~~E~l~~~~r~~~~~-dsa~VTglLla-l~LPp~~P~W~~~iG~~fAIvi 181 (413)
T TIGR01937 125 LLVSYAVGGTWEVLFAVVRKHEIN-EGFLVTGILFP-LIVPPTIPLWMAALGIAFGVVV 181 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHH
Confidence 35567777777743 33 76666666665 6788877777777777777665
No 13
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.76 E-value=2.7e+02 Score=26.16 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCcccCccccccccchhHHHHhHHHH
Q 028575 88 SHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVA 122 (207)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~s~KeAl~ws~ 122 (207)
+|||.|-..||.-..|.-+|=|...| +|...+..
T Consensus 5 ~d~eKTE~pT~kKL~dARkkGqV~kS-~el~~a~~ 38 (359)
T PRK05702 5 DDDEKTEEPTPKKLEKAREKGQVPRS-RELNTAAS 38 (359)
T ss_pred CCCCCCCCCChhHHHHHHHcCCCCch-HHHHHHHH
Confidence 33444444566666666666676666 66544433
No 14
>PRK10739 putative antibiotic transporter; Provisional
Probab=43.17 E-value=57 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 158 SVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
.+.|+-+|+-+.+ +.+++.|+|+..-..+-|.+.=.+|.+.|-.+++
T Consensus 17 Pig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~ 63 (197)
T PRK10739 17 PLGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILA 63 (197)
T ss_pred HhhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999988 7799999999998888888888888888887664
No 15
>PRK10995 inner membrane protein; Provisional
Probab=42.63 E-value=57 Score=27.96 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 158 SVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
-+.|+-+|+-+-+ +.+++.|+|+-....+-|.+.=.+|.+.|..+++
T Consensus 21 P~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~ 67 (221)
T PRK10995 21 PLTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMS 67 (221)
T ss_pred hhhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899998888 7789999999999988888888888888887764
No 16
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=41.20 E-value=1.7e+02 Score=25.47 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=21.1
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhhhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg~~ 134 (207)
+.+++.|||..+......++++.+.+
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~ 101 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIF 101 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999998888888776554
No 17
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=39.08 E-value=35 Score=34.62 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=27.1
Q ss_pred chhHHHHhHHHHHHHHHHHHhhhhhhh--eeCch--hhHHHHHHHHHH
Q 028575 111 RESYTSSVKTVAFCVSTAVAFGLGVGF--IEGAS--KASEFFAGYILE 154 (207)
Q Consensus 111 ~~s~KeAl~ws~~wV~LAllFg~~I~~--~~G~~--~a~EFfTGYLiE 154 (207)
+..++.|+.|..+|-.+-.+--+.+|= ..|.. ..-.||+||++-
T Consensus 547 k~kl~Ra~~i~~~~~li~t~~~viiwP~pmygskyIFSk~fF~gWviV 594 (667)
T KOG2348|consen 547 KKKLNRALRIGIFVSLIITFAFVIIWPLPMYGSKYIFSKLFFTGWVIV 594 (667)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccccccCccceeechhhhHHHHH
Confidence 337788999988774432222233442 35655 456799999873
No 18
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=38.89 E-value=76 Score=27.05 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 158 SVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
-+.|+.+|+-+-+ +.+++.|+|+..-..+-|.+.=.+|.++|-.+++
T Consensus 17 P~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~ 63 (203)
T PF01914_consen 17 PIGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILN 63 (203)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998 7788999999999999999988999999987765
No 19
>PRK11111 hypothetical protein; Provisional
Probab=37.72 E-value=74 Score=27.60 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 158 SVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
-+.|+-+|+-+-+ +-+++.|+|+.....+-|.+.=.+|.++|-.+++
T Consensus 23 Pig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~ 69 (214)
T PRK11111 23 PVGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILN 69 (214)
T ss_pred cchhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988 6688999999999988888888899999987764
No 20
>KOG4564 consensus Adenylate cyclase-coupled calcitonin receptor [Signal transduction mechanisms]
Probab=37.67 E-value=86 Score=30.87 Aligned_cols=50 Identities=28% Similarity=0.444 Sum_probs=37.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcCC---CCccchhhHHHHHHHHHHHHHHHHHHHhhh
Q 028575 150 GYILEQSLSVDNLFVFVLIFKYFK---VPVMYQNRVLSYGIAGAIVFRLSLILLGTA 203 (207)
Q Consensus 150 GYLiEkSLSVDNLFVF~lIFs~F~---VP~~yQhRVLf~GIlGALVfR~IFI~lGaa 203 (207)
.|.+=++||+=-|+|=++||.+|+ -.+.|=|+=|| -+.++|++++++=-.
T Consensus 150 lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF----~SfiLra~~~~i~~~ 202 (473)
T KOG4564|consen 150 LYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLF----ASFILRAASVLIKDL 202 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 466778999999999999998886 33445555555 688999998886443
No 21
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=37.63 E-value=24 Score=28.36 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHHH
Q 028575 141 ASKASEFFAGYILEQS 156 (207)
Q Consensus 141 ~~~a~EFfTGYLiEkS 156 (207)
.+.|+||++||+.-|-
T Consensus 75 e~d~l~YiaGyVa~k~ 90 (106)
T PF12596_consen 75 EEDGLEYIAGYVAKKF 90 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999998763
No 22
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=37.18 E-value=1.2e+02 Score=26.89 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=24.7
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhhhhhhheeC
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg~~I~~~~G 140 (207)
+.+++.||+..+..+...+|+++|+++.+..|
T Consensus 84 ~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~ 115 (296)
T PRK05951 84 AGIMTLGHLRVLGIALGAIALQLGWSLVLDRG 115 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999888888888777655433
No 23
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=36.55 E-value=72 Score=27.73 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028575 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 158 SVDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVfR~IFI~lGaaLI~ 206 (207)
.+.|+=+|+-+-+ +.|++.|+|+..-..+-|.+.=.+|.++|-.+++
T Consensus 20 P~G~ipvf~slt~--~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~ 66 (203)
T COG2095 20 PIGNLPVFISLTK--GLSPEERNRVALRASIIALLILLVFLLLGEGILR 66 (203)
T ss_pred CCchhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999 8899999999999998888888888888887765
No 24
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=33.08 E-value=2.8e+02 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=17.0
Q ss_pred cchhHHHHhHHHHHHHHHHHHhh
Q 028575 110 GRESYTSSVKTVAFCVSTAVAFG 132 (207)
Q Consensus 110 ~~~s~KeAl~ws~~wV~LAllFg 132 (207)
.+.+.|++..+.+....+|++.+
T Consensus 93 G~ls~~~a~~~~~~~~~lal~la 115 (308)
T PRK12887 93 GEFSRRQGQRIVIITGILALILA 115 (308)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 57889999887776666666654
No 25
>COG3329 Predicted permease [General function prediction only]
Probab=32.01 E-value=1.8e+02 Score=28.13 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=64.1
Q ss_pred cccccCCCccCCCCccccccCCCCCCCCCCCCCCCcccCccccccccchhHHHHhHHHHHHHHHHHHhhhhhhheeCc--
Q 028575 64 LACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGA-- 141 (207)
Q Consensus 64 ~~~~~~~~q~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~KeAl~ws~~wV~LAllFg~~I~~~~G~-- 141 (207)
.|.....+|+|-.|.-++.+++++..||. + .-++-.+|++.-...- +++=|+.+.+..|.
T Consensus 176 vA~~e~g~~~d~~ssr~~~~~~~~~ed~~--------v-------~~~ell~Esflnpal~---lllggl~iGlitGe~g 237 (372)
T COG3329 176 VAAGEYGDQTDLASSRQEYLSPQWGEDNR--------V-------KIWELLQESFLNPALV---LLLGGLAIGLITGEQG 237 (372)
T ss_pred hhhcccCchhhhhhhhhhhcccccCcccc--------h-------hhHHHHHHHHcCchHH---HHHHHHHHhheeccCc
Confidence 55556666666666556666666665651 1 1123346665544332 23334556677653
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHh---cCCCC--ccchhhHHHHHHHHHHHHHHHHHHHhh
Q 028575 142 SKASEFFAGYILEQSLSVDNLFVFVLIFK---YFKVP--VMYQNRVLSYGIAGAIVFRLSLILLGT 202 (207)
Q Consensus 142 ~~a~EFfTGYLiEkSLSVDNLFVF~lIFs---~F~VP--~~yQhRVLf~GIlGALVfR~IFI~lGa 202 (207)
+.-.|=|+.-+-...|++ |++.+. .=+++ ++.-+...++|++-=++.-.+-+.+|-
T Consensus 238 ~~vl~~F~~~lFqGvL~l-----flL~MGm~A~rrl~elrk~g~~~v~fgllaPil~g~ig~~lg~ 298 (372)
T COG3329 238 ESVLKPFFDPLFQGVLCL-----FLLDMGMTAGRRLKELRKVGQGLVLFGLLAPILHGFIGLLLGM 298 (372)
T ss_pred hhhhhhhhHHHHHHHHHH-----HHHHHhHHHHHHHHHHHhcCcceehHHHHHHHHHHHHHHHHHH
Confidence 334444555556665553 444332 22344 344567788899988888777766664
No 26
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=31.09 E-value=1.2e+02 Score=26.14 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=19.7
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhhhhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg~~I 135 (207)
..+++.|++.....+...++++.+..+
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l 102 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLI 102 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999888877777777665543
No 27
>PLN02878 homogentisate phytyltransferase
Probab=30.11 E-value=4.4e+02 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCCCCCCcccCccccccccchhHHHHhHHHHHHHHHHHHhhhhh
Q 028575 92 DNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (207)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~s~KeAl~ws~~wV~LAllFg~~I 135 (207)
|+.|..-+..+ +.++|.|+|...++++..++++.+..+
T Consensus 51 DkINkP~rPIp------SG~iS~~~a~~~~~~~~~lg~~la~~~ 88 (280)
T PLN02878 51 DKVNKPYLPLA------SGEFSVATGVAIVTSFAIMSFGMGWIV 88 (280)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456677 458999999999888888877766554
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=29.34 E-value=2.9e+02 Score=23.88 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=17.1
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg 132 (207)
+.+++.|++..+......++++.+
T Consensus 76 sG~is~~~a~~~~~~l~~~g~~l~ 99 (277)
T PRK12883 76 RGAMSRKAALYYSLLLFAVGLALA 99 (277)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHH
Confidence 457888999988877666665443
No 29
>PHA02513 V1 structural protein V1; Reviewed
Probab=28.66 E-value=48 Score=27.75 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 028575 188 AGAIVFRLSLILLGTATLQ 206 (207)
Q Consensus 188 lGALVfR~IFI~lGaaLI~ 206 (207)
++.+++=.+||++|+.|++
T Consensus 67 ~k~ii~L~IFIliGivl~~ 85 (135)
T PHA02513 67 IGVLLGLFIFILIGIVLLP 85 (135)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5778888999999999875
No 30
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=28.56 E-value=50 Score=37.56 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=44.5
Q ss_pred ccccccchhHHHHhHHHHHHHH--------HHHHhhhhhhheeC--chhhHHHHHHHHHHHHhh-hhHHHHHHHHHhcCC
Q 028575 105 ERQIEGRESYTSSVKTVAFCVS--------TAVAFGLGVGFIEG--ASKASEFFAGYILEQSLS-VDNLFVFVLIFKYFK 173 (207)
Q Consensus 105 ~~~~~~~~s~KeAl~ws~~wV~--------LAllFg~~I~~~~G--~~~a~EFfTGYLiEkSLS-VDNLFVF~lIFs~F~ 173 (207)
+-+||.+..-+-.+.|.+..+. +|++.++.+.+++- .... .+|| .-|+..|..+|..|.
T Consensus 2234 EM~WQrklr~~p~l~W~s~~mslW~sisFn~av~iN~lVAffYPf~~~~~----------g~ls~l~sll~W~av~~s~~ 2303 (2706)
T KOG3533|consen 2234 EMIWQRKLRDRPWLSWCARRMSLWTSISFNLAVIINALVAFFYPFPEHSN----------GSLSSLGSLLSWFAVFISFL 2303 (2706)
T ss_pred HHHHHHHhhcCcHHHHHHhhhhHhhhhhhhHHHHHHHHHHhccCCCCCCC----------cchhhHHHHHHHHHHHHHHH
Confidence 3456766666667777754433 45555655555542 1111 1222 445555544444443
Q ss_pred ----CCccchhhHHHHHHHHHHHHHHHHH
Q 028575 174 ----VPVMYQNRVLSYGIAGAIVFRLSLI 198 (207)
Q Consensus 174 ----VP~~yQhRVLf~GIlGALVfR~IFI 198 (207)
.|+.|-+|- +++++++|.|+-
T Consensus 2304 i~~~l~k~~gir~----~i~s~ilr~i~~ 2328 (2706)
T KOG3533|consen 2304 IAHYLRKIYGIRT----ILASLILRLISS 2328 (2706)
T ss_pred HHHHhcchhhhHH----HHHHHHHHHHHH
Confidence 345555554 889999999974
No 31
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=28.03 E-value=2.9e+02 Score=26.91 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhh-------hhHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHH
Q 028575 144 ASEFFAGYILEQSLS-------VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (207)
Q Consensus 144 a~EFfTGYLiEkSLS-------VDNLFVF~lIFs~F~VP~~yQhRVLf~GIlGALVf 193 (207)
+.-+.++.+.|.... -|...|-.+++. +.+|..----+...|.+-|+++
T Consensus 125 ~vs~~~a~~~E~l~~~~r~k~~~dga~VTglLla-l~LPp~~P~W~vviG~~fAIvi 180 (405)
T PRK05349 125 LVSFIVGGFWEVLFAVVRGHEVNEGFFVTSILFA-LILPPTIPLWQVALGISFGVVI 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHH-HHCCCCchHHHHHHHHHHHHHH
Confidence 555677777774332 344444444443 6777777777777777666664
No 32
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.80 E-value=55 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhhhhe
Q 028575 119 KTVAFCVSTAVAFGLGVGFI 138 (207)
Q Consensus 119 ~ws~~wV~LAllFg~~I~~~ 138 (207)
+..++|+.+|+++|++.++|
T Consensus 4 ~lail~ivl~ll~G~~~G~f 23 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFF 23 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34458999999999888764
No 33
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=27.73 E-value=1.1e+02 Score=26.74 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=17.9
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg 132 (207)
+.+++.|||..+..+...++++.+
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~l~ 100 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGTALG 100 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 468999999998877766655543
No 34
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=26.53 E-value=2.5e+02 Score=28.37 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred ccchhHHHHhHHH---------HHHHHHHHHhhhhhhheeCc-hhhHHHHHHHHHHHHh------hhhHHHHHHHHHh--
Q 028575 109 EGRESYTSSVKTV---------AFCVSTAVAFGLGVGFIEGA-SKASEFFAGYILEQSL------SVDNLFVFVLIFK-- 170 (207)
Q Consensus 109 ~~~~s~KeAl~ws---------~~wV~LAllFg~~I~~~~G~-~~a~EFfTGYLiEkSL------SVDNLFVF~lIFs-- 170 (207)
+++...++|+.++ +.|..+|++++.+.| ..|. ..=..=+..-+=|+ - .||.+.++..+|.
T Consensus 128 ~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~-rk~~pl~lss~l~Pllg~~-~~G~~G~~IDi~aiiaTl~GiA 205 (537)
T COG1292 128 NTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHY-RKGLPLLLSSALYPLLGER-IKGPIGHAVDILAIIATLFGIA 205 (537)
T ss_pred CCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeE-ecCCCchhhhhhhhhhccc-ccCccchhhHHHHHHHHHHHHH
Confidence 5677788998887 467778888876333 2232 12122233333344 3 7899999988875
Q ss_pred ----------------cCCCCccchhhHHHHHHHHHHH
Q 028575 171 ----------------YFKVPVMYQNRVLSYGIAGAIV 192 (207)
Q Consensus 171 ----------------~F~VP~~yQhRVLf~GIlGALV 192 (207)
-|.+|....-.+....++.++.
T Consensus 206 TsLG~ga~qi~~Gl~~l~gip~~~~~q~~iI~vi~~~~ 243 (537)
T COG1292 206 TSLGLGALQLTAGLSYLFGIPNSFAVQAIIIAVITALF 243 (537)
T ss_pred HHHHHhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 4788866666666665555554
No 35
>COG1971 Predicted membrane protein [Function unknown]
Probab=25.16 E-value=4.4e+02 Score=23.21 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhhhee----Cchh--------h-HHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCccchhhHHHHH
Q 028575 122 AFCVSTAVAFGLGVGFIE----GASK--------A-SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYG 186 (207)
Q Consensus 122 ~~wV~LAllFg~~I~~~~----G~~~--------a-~EFfTGYLiEkSLSVDNLFVF~lIFs~F~VP~~yQhRVLf~G 186 (207)
.=|++-+++..+++|... +.+. . ..|..-.++--+.|+||+-|=+-.. .++-.-+.-+...|
T Consensus 69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~~a---~lgv~i~~~av~iG 143 (190)
T COG1971 69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVGLA---FLGVNILLAAVAIG 143 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhhHH---HhcchHHHHHHHHH
Confidence 447778888888877632 2221 1 1267777888999999987755322 34455666777777
No 36
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=25.10 E-value=1.2e+02 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=18.8
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFGL 133 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg~ 133 (207)
+.+++.|||..++.+...++++.+.
T Consensus 77 ~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 77 SGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999888777777666544
No 37
>PF14029 DUF4244: Protein of unknown function (DUF4244)
Probab=24.18 E-value=1.4e+02 Score=21.65 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhhhheeCchhhHHHHHHHHHHHHhh
Q 028575 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLS 158 (207)
Q Consensus 122 ~~wV~LAllFg~~I~~~~G~~~a~EFfTGYLiEkSLS 158 (207)
++=...|+.|++.+|...-++.-..-+++ ++|++||
T Consensus 21 AvgtlAA~afA~vL~~vvts~~v~~~L~~-ii~~ALs 56 (56)
T PF14029_consen 21 AVGTLAAAAFAGVLYKVVTSDEVRSALTG-IIERALS 56 (56)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHcC
Confidence 44566789999999988877777777777 5677775
No 38
>PRK10649 hypothetical protein; Provisional
Probab=23.70 E-value=4.6e+02 Score=25.91 Aligned_cols=18 Identities=6% Similarity=0.240 Sum_probs=12.6
Q ss_pred cchhHHHHhHHHHHHHHH
Q 028575 110 GRESYTSSVKTVAFCVST 127 (207)
Q Consensus 110 ~~~s~KeAl~ws~~wV~L 127 (207)
.-.++|+|+..+++|...
T Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (577)
T PRK10649 42 GTNGFRDALLFSSLWLIP 59 (577)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 345678888888888543
No 39
>PRK13741 conjugal transfer entry exclusion protein TraS; Provisional
Probab=22.63 E-value=3.8e+02 Score=23.43 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhhhhee---CchhhHHHHHHHHHHHHhhhhHHHHHHHH----HhcCCCCccchhhHHHHHHH
Q 028575 119 KTVAFCVSTAVAFGLGVGFIE---GASKASEFFAGYILEQSLSVDNLFVFVLI----FKYFKVPVMYQNRVLSYGIA 188 (207)
Q Consensus 119 ~ws~~wV~LAllFg~~I~~~~---G~~~a~EFfTGYLiEkSLSVDNLFVF~lI----Fs~F~VP~~yQhRVLf~GIl 188 (207)
.|.++|=++.+.++..+|-.. ..++..--=+|+-+=-+ -+=-.++|+.| .-|+.+|++++++-..+..+
T Consensus 28 ~~~c~~PG~~~~lw~llwp~~~~~~~~~~~~~~~~~~i~~~-g~~Gf~if~~i~n~R~lYLSiP~~fRk~S~v~rfi 103 (171)
T PRK13741 28 LWQVIKPGLIVMLWMLLWPTFLRFLADKVDIRDAGFDVLAS-GVLGFIIFVAITNGRMLYLSIPDEFRKESKVIRFI 103 (171)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHhccccHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHhhhHHHHHH
Confidence 577777777777777666311 00000000001100000 02234455544 45899999998875554443
No 40
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=21.66 E-value=3.6e+02 Score=21.72 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhhhheeCchhhHHHH-HHHHHHHHhhhhHHHHHHHHHhc
Q 028575 121 VAFCVSTAVAFGLGVGFIEGASKASEFF-AGYILEQSLSVDNLFVFVLIFKY 171 (207)
Q Consensus 121 s~~wV~LAllFg~~I~~~~G~~~a~EFf-TGYLiEkSLSVDNLFVF~lIFs~ 171 (207)
+.+=++.+++++.+++.+.|.+...--. .--.+=-..-+||.|++.=-+..
T Consensus 12 ~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~ 63 (153)
T PF12349_consen 12 GIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRR 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444556666666777666755443211 11122246789999999866663
No 41
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=21.43 E-value=5.6e+02 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=18.3
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhhhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg~~ 134 (207)
+.+++.|++..+..+...++++.+..
T Consensus 104 sG~is~~~a~~~~~~l~~~~~~l~~~ 129 (314)
T PRK07566 104 SGAISLRWVLYLIAVLTVLGLAVAYL 129 (314)
T ss_pred CceeCHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899988887777666654443
No 42
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=21.09 E-value=1.7e+02 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=17.5
Q ss_pred ccchhHHHHhHHHHHHHHHHHH
Q 028575 109 EGRESYTSSVKTVAFCVSTAVA 130 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAll 130 (207)
+.+++.|||+.+++++..++++
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~ 99 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEI 99 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999999877766544
No 43
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=20.65 E-value=5.6e+02 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=23.0
Q ss_pred ccchhHHHHhHHHHHHHHHHHHhhhhhhh
Q 028575 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGF 137 (207)
Q Consensus 109 ~~~~s~KeAl~ws~~wV~LAllFg~~I~~ 137 (207)
..+++.||+..+...+..++++.|.++.+
T Consensus 81 ~G~is~~~~~~~~~~~~~~~~~~g~~l~~ 109 (293)
T PRK06080 81 RGGISPKQVKRAAIAFFGLAALLGLYLVA 109 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999988888888887776544
No 44
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=20.42 E-value=1.3e+02 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHHHHHhhhhhhhe
Q 028575 115 TSSVKTVAFCVSTAVAFGLGVGFI 138 (207)
Q Consensus 115 KeAl~ws~~wV~LAllFg~~I~~~ 138 (207)
|-.....++-|.+++++|++.|++
T Consensus 34 ~~g~~l~~~aili~la~g~g~y~~ 57 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAGAGLYYH 57 (390)
T ss_pred CccHHHHHHHHHHHHHHhhHHHHH
Confidence 344555667777888999888876
Done!