Query 028575
Match_columns 207
No_of_seqs 165 out of 773
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 22:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls4_A High affinity copper up 23.9 25 0.00084 21.1 0.0 20 123-142 3-23 (26)
2 4erc_A Dual specificity protei 18.3 1.3E+02 0.0046 21.2 3.9 51 134-184 92-143 (150)
3 2img_A Dual specificity protei 14.7 1.6E+02 0.0054 20.7 3.5 51 134-184 93-144 (151)
4 3s4o_A Protein tyrosine phosph 13.9 1.4E+02 0.0049 21.3 3.1 49 134-183 113-162 (167)
5 2wh0_Q Pkcev3, protein kinase 13.1 54 0.0018 20.4 0.5 8 154-161 23-30 (31)
6 3rgo_A Protein-tyrosine phosph 12.9 2.1E+02 0.0071 20.3 3.8 52 133-184 92-144 (157)
7 3kdp_B Sodium/potassium-transp 10.5 1.9E+02 0.0064 25.2 3.3 25 114-138 16-40 (286)
8 4grv_A Neurotensin receptor ty 10.4 6.2E+02 0.021 21.7 6.6 12 155-166 75-86 (510)
9 3fym_A Putative uncharacterize 9.3 85 0.0029 23.1 0.6 22 117-138 104-125 (130)
10 1jfi_A Transcription regulator 8.4 1.9E+02 0.0064 21.0 2.1 16 143-158 40-55 (98)
No 1
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=23.91 E-value=25 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhhee-Cch
Q 028575 123 FCVSTAVAFGLGVGFIE-GAS 142 (207)
Q Consensus 123 ~wV~LAllFg~~I~~~~-G~~ 142 (207)
.|+.+|++.|+.+.++. |.+
T Consensus 3 g~l~iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYFLFSWK 23 (26)
Confidence 58899999998887653 443
No 2
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=18.34 E-value=1.3e+02 Score=21.22 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.3
Q ss_pred hhhheeCchhhHHHHHHHHHH-HHhhhhHHHHHHHHHhcCCCCccchhhHHH
Q 028575 134 GVGFIEGASKASEFFAGYILE-QSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (207)
Q Consensus 134 ~I~~~~G~~~a~EFfTGYLiE-kSLSVDNLFVF~lIFs~F~VP~~yQhRVLf 184 (207)
++....|.+.+.-+.+.|++. +-++++.++-.+--...-.+|...|.+.|.
T Consensus 92 lVHC~~G~~Rsg~~~a~~l~~~~~~~~~~a~~~vr~~R~~~~~~~~q~~~l~ 143 (150)
T 4erc_A 92 GVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVF 143 (150)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 344457888999999999987 778999999888888778888887777664
No 3
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=14.71 E-value=1.6e+02 Score=20.71 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=41.1
Q ss_pred hhhheeCchhhHHHHHHHHHHH-HhhhhHHHHHHHHHhcCCCCccchhhHHH
Q 028575 134 GVGFIEGASKASEFFAGYILEQ-SLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (207)
Q Consensus 134 ~I~~~~G~~~a~EFfTGYLiEk-SLSVDNLFVF~lIFs~F~VP~~yQhRVLf 184 (207)
+|--..|.+.+.-+.+.|++.. -++.+.++-.+--...-.+|...|.+-|.
T Consensus 93 lVHC~aG~~Rsg~~~~~~l~~~~~~~~~~a~~~~r~~R~~~~~~~~q~~~l~ 144 (151)
T 2img_A 93 GVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVF 144 (151)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCSCSHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 3444578889999999999988 89999999888877877888877776653
No 4
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=13.89 E-value=1.4e+02 Score=21.30 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=37.9
Q ss_pred hhhheeCchhhHHHHHHHHHHH-HhhhhHHHHHHHHHhcCCCCccchhhHH
Q 028575 134 GVGFIEGASKASEFFAGYILEQ-SLSVDNLFVFVLIFKYFKVPVMYQNRVL 183 (207)
Q Consensus 134 ~I~~~~G~~~a~EFfTGYLiEk-SLSVDNLFVF~lIFs~F~VP~~yQhRVL 183 (207)
+|-...|...+.-+.+.|+++. -++.+.++-.+--...-.|. ..|.+.|
T Consensus 113 lVHC~aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~~R~~~v~-~~Q~~fl 162 (167)
T 3s4o_A 113 GVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAIN-QTQMHWI 162 (167)
T ss_dssp EEECSSSSSHHHHHHHHHHHHTTCCCHHHHHHHHHHHSTTCSC-HHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCC-HHHHHHH
Confidence 3444579999999999999998 89999998887666666665 5565544
No 5
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=13.09 E-value=54 Score=20.42 Aligned_cols=8 Identities=50% Similarity=0.742 Sum_probs=3.8
Q ss_pred HHHhhhhH
Q 028575 154 EQSLSVDN 161 (207)
Q Consensus 154 EkSLSVDN 161 (207)
.|+||.||
T Consensus 23 rkalsfdn 30 (31)
T 2wh0_Q 23 RKALSFDN 30 (31)
T ss_pred HHHhcccc
Confidence 34445444
No 6
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=12.88 E-value=2.1e+02 Score=20.34 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=40.7
Q ss_pred hhhhheeCchhhHHHHHHHHHH-HHhhhhHHHHHHHHHhcCCCCccchhhHHH
Q 028575 133 LGVGFIEGASKASEFFAGYILE-QSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (207)
Q Consensus 133 ~~I~~~~G~~~a~EFfTGYLiE-kSLSVDNLFVF~lIFs~F~VP~~yQhRVLf 184 (207)
++|....|...+.-+.+.|++. +-+|.+.++-.+---..-.+|...|.+-|.
T Consensus 92 vlVHC~~G~~Rsg~~~~a~l~~~~~~~~~~a~~~v~~~R~~~~~~~~~~~~L~ 144 (157)
T 3rgo_A 92 VYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLK 144 (157)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCCHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 3444567888888899999997 679999998888777767788877777654
No 7
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=10.54 E-value=1.9e+02 Score=25.23 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=21.0
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhhhe
Q 028575 114 YTSSVKTVAFCVSTAVAFGLGVGFI 138 (207)
Q Consensus 114 ~KeAl~ws~~wV~LAllFg~~I~~~ 138 (207)
.|-.+.-.+||+.||.+|.+.+|.+
T Consensus 16 ~~IllFYliFY~~La~lFa~~m~v~ 40 (286)
T 3kdp_B 16 FKILLFYVIFYGCLAGIFIGTIQVM 40 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778899999999999988875
No 8
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=10.45 E-value=6.2e+02 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.658 Sum_probs=8.0
Q ss_pred HHhhhhHHHHHH
Q 028575 155 QSLSVDNLFVFV 166 (207)
Q Consensus 155 kSLSVDNLFVF~ 166 (207)
-+|++-++++.+
T Consensus 75 ~~La~aDll~~~ 86 (510)
T 4grv_A 75 GSLALSDLLILL 86 (510)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467887776544
No 9
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=9.30 E-value=85 Score=23.11 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHhhhhhhhe
Q 028575 117 SVKTVAFCVSTAVAFGLGVGFI 138 (207)
Q Consensus 117 Al~ws~~wV~LAllFg~~I~~~ 138 (207)
...|.++|+++.+++++.+|+.
T Consensus 104 ~~~~~~i~~~~~i~i~~~~~~~ 125 (130)
T 3fym_A 104 EPIQLLVIMGITVLITLLLWIM 125 (130)
T ss_dssp ----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888878888777764
No 10
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=8.40 E-value=1.9e+02 Score=21.04 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhh
Q 028575 143 KASEFFAGYILEQSLS 158 (207)
Q Consensus 143 ~a~EFfTGYLiEkSLS 158 (207)
++.|||+.+++|.+.-
T Consensus 40 ~a~E~Fi~el~~~A~~ 55 (98)
T 1jfi_A 40 RALELFLESLLKKACQ 55 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999998854
Done!