Query 028575
Match_columns 207
No_of_seqs 165 out of 773
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 22:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028575.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028575hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 17.2 34 0.0025 21.4 2.1 17 142-158 30-46 (66)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 14.9 87 0.0063 18.8 3.4 25 173-197 7-31 (37)
3 d2v0fa1 d.76.2.1 (A:2629-2715) 13.1 30 0.0022 24.2 1.0 18 167-184 60-77 (87)
4 d1xmeb2 f.17.2.1 (B:3-36) Bact 12.9 92 0.0067 18.2 3.1 22 146-170 11-32 (34)
5 d1iyjb3 b.40.4.3 (B:2599-2731) 9.9 65 0.0048 23.5 2.1 36 10-46 95-131 (133)
6 d1i9sa_ c.45.1.1 (A:) mRNA cap 8.0 1.7E+02 0.012 21.1 3.7 51 133-183 118-169 (194)
7 d2hyda2 f.37.1.1 (A:1-323) Put 6.2 1.6E+02 0.012 20.4 2.7 23 153-175 271-293 (323)
8 d1c3da_ a.102.4.4 (A:) C3D, a 6.1 69 0.005 23.3 0.6 17 140-156 77-93 (294)
9 d1n1jb_ a.22.1.3 (B:) Nuclear 5.8 1.5E+02 0.011 18.5 2.1 16 142-157 28-43 (78)
10 d2e74e1 f.23.24.1 (E:1-32) Pet 5.3 1.8E+02 0.013 16.6 2.0 13 182-194 13-25 (32)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.18 E-value=34 Score=21.44 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHhh
Q 028575 142 SKASEFFAGYILEQSLS 158 (207)
Q Consensus 142 ~~a~EFfTGYLiEkSLS 158 (207)
.++.|+|..|++|++--
T Consensus 30 ~~a~E~Fi~~l~~~A~~ 46 (66)
T d1jfia_ 30 SRALELFLESLLKKACQ 46 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36789999999998754
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.92 E-value=87 Score=18.78 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.1
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHH
Q 028575 173 KVPVMYQNRVLSYGIAGAIVFRLSL 197 (207)
Q Consensus 173 ~VP~~yQhRVLf~GIlGALVfR~IF 197 (207)
+.|-+.-+.-|+||.+...|+-.+|
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHHHHH
Confidence 4567788889999998877765554
No 3
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.08 E-value=30 Score=24.21 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.5
Q ss_pred HHHhcCCCCccchhhHHH
Q 028575 167 LIFKYFKVPVMYQNRVLS 184 (207)
Q Consensus 167 lIFs~F~VP~~yQhRVLf 184 (207)
++++.+..|+.+|+|+|.
T Consensus 60 ~vk~~g~lpe~~~~R~l~ 77 (87)
T d2v0fa1 60 IVKQSGFVPESMFDRLLT 77 (87)
T ss_dssp HHHHHSSSCGGGGGGSCC
T ss_pred HHhhcCcCcHHHhhcccC
Confidence 456788999999999873
No 4
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=12.86 E-value=92 Score=18.16 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHh
Q 028575 146 EFFAGYILEQSLSVDNLFVFVLIFK 170 (207)
Q Consensus 146 EFfTGYLiEkSLSVDNLFVF~lIFs 170 (207)
.|=-||+ +.|+.-+|||+.+..
T Consensus 11 ayekgwl---afslamlfvfialia 32 (34)
T d1xmeb2 11 AYEKGWL---AFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHhhHH---HHHHHHHHHHHHHHh
Confidence 4555654 356666888876654
No 5
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.94 E-value=65 Score=23.51 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=25.8
Q ss_pred CccCCCcc-cceeEEeccCCcccCCCccccccccCCCC
Q 028575 10 GVQAPHKF-DSLLLRFSPTSTSQVPKLTSLLHFCNSQA 46 (207)
Q Consensus 10 ~~~~p~~~-d~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 46 (207)
+--.|+.- |++.|+++ .+++.+-.|.++|-|+.-+.
T Consensus 95 ~~~sPLE~~~s~~L~i~-~Nstr~a~w~~kLGf~~~p~ 131 (133)
T d1iyjb3 95 DACAPLEAPDSLRLKIS-ANSTRPARWHSKLGFFHDPR 131 (133)
T ss_dssp SCCCGGGCCSSCEEECC-TTTEEECCSSSCSEECSCCS
T ss_pred CCcCcccccCccEEEEe-ecceeeccccccCcccCCCC
Confidence 44456655 88889988 55555667999999987543
No 6
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.96 E-value=1.7e+02 Score=21.10 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=41.4
Q ss_pred hhhhheeCchhhHHHHHHHHHHH-HhhhhHHHHHHHHHhcCCCCccchhhHH
Q 028575 133 LGVGFIEGASKASEFFAGYILEQ-SLSVDNLFVFVLIFKYFKVPVMYQNRVL 183 (207)
Q Consensus 133 ~~I~~~~G~~~a~EFfTGYLiEk-SLSVDNLFVF~lIFs~F~VP~~yQhRVL 183 (207)
++|--..|...+.-..+.||+++ -.|.|..+=++---.--.++...|.+.|
T Consensus 118 V~VHC~~G~~Rsg~~i~ayL~~~~~~s~~~Ai~~~~~~Rp~~i~~~~~~~~L 169 (194)
T d1i9sa_ 118 IGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKEL 169 (194)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 34445678899999999999985 8999999988888877778877777766
No 7
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=6.18 E-value=1.6e+02 Score=20.35 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCC
Q 028575 153 LEQSLSVDNLFVFVLIFKYFKVP 175 (207)
Q Consensus 153 iEkSLSVDNLFVF~lIFs~F~VP 175 (207)
....+|+.+++.|+..+..+.-|
T Consensus 271 ~~g~~s~g~l~~~~~~~~~l~~~ 293 (323)
T d2hyda2 271 ISGSITVGTLAAFVGYLELLFGP 293 (323)
T ss_dssp HHTSCCHHHHHHHHHTHHHHTTH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888888888776655433
No 8
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.12 E-value=69 Score=23.32 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=13.3
Q ss_pred CchhhHHHHHHHHHHHH
Q 028575 140 GASKASEFFAGYILEQS 156 (207)
Q Consensus 140 G~~~a~EFfTGYLiEkS 156 (207)
|...+..|+|.|+++-.
T Consensus 77 ~~~~~~~~lTayv~~~L 93 (294)
T d1c3da_ 77 VKRAPSTWLTAYVVKVF 93 (294)
T ss_dssp TTSCCCHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHH
Confidence 55667889999999853
No 9
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.75 E-value=1.5e+02 Score=18.50 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHh
Q 028575 142 SKASEFFAGYILEQSL 157 (207)
Q Consensus 142 ~~a~EFfTGYLiEkSL 157 (207)
.+|.|.|..|+++.+-
T Consensus 28 ~~a~E~Fi~~l~~~A~ 43 (78)
T d1n1jb_ 28 AKAAQIFITELTLRAW 43 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999998873
No 10
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.31 E-value=1.8e+02 Score=16.64 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 028575 182 VLSYGIAGAIVFR 194 (207)
Q Consensus 182 VLf~GIlGALVfR 194 (207)
+||+||.-.++|-
T Consensus 13 alffgiavgiifa 25 (32)
T d2e74e1 13 ALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhheee
Confidence 5777777666653
Done!