Query 028577
Match_columns 207
No_of_seqs 244 out of 1747
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 13:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 1.2E-25 2.6E-30 177.1 12.7 116 86-204 12-136 (137)
2 PRK11597 heat shock chaperone 99.9 8.8E-25 1.9E-29 173.1 14.2 97 106-205 31-135 (142)
3 COG0071 IbpA Molecular chapero 99.9 4.7E-24 1E-28 169.4 14.2 98 106-204 39-145 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 4.1E-22 8.8E-27 146.5 10.9 83 109-192 1-92 (92)
5 cd06497 ACD_alphaA-crystallin_ 99.9 5.8E-22 1.3E-26 144.5 11.3 81 111-192 4-86 (86)
6 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.8E-21 3.9E-26 140.9 10.9 81 111-192 1-83 (83)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 3.2E-21 6.9E-26 143.4 12.5 93 111-204 1-101 (102)
8 cd06479 ACD_HspB7_like Alpha c 99.9 1.5E-21 3.3E-26 140.9 10.3 79 111-192 2-81 (81)
9 cd06498 ACD_alphaB-crystallin_ 99.9 2.2E-21 4.9E-26 140.9 11.1 81 112-193 2-84 (84)
10 cd06471 ACD_LpsHSP_like Group 99.9 3.1E-21 6.7E-26 141.8 11.1 83 108-192 1-93 (93)
11 cd06475 ACD_HspB1_like Alpha c 99.9 6.8E-21 1.5E-25 138.9 11.2 81 110-191 3-85 (86)
12 cd06470 ACD_IbpA-B_like Alpha- 99.8 1.3E-20 2.9E-25 138.1 11.7 82 108-192 1-90 (90)
13 cd06476 ACD_HspB2_like Alpha c 99.8 1.2E-20 2.6E-25 136.8 11.1 80 112-192 2-83 (83)
14 cd06477 ACD_HspB3_Like Alpha c 99.8 6.2E-20 1.4E-24 133.0 11.0 78 113-191 3-82 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.8 1.1E-19 2.3E-24 132.9 9.9 78 114-192 4-87 (87)
16 cd06526 metazoan_ACD Alpha-cry 99.8 1.4E-19 2.9E-24 130.7 10.2 76 116-192 6-83 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.8 4.7E-19 1E-23 129.5 10.3 77 114-191 5-86 (87)
18 cd06464 ACD_sHsps-like Alpha-c 99.8 9.2E-19 2E-23 125.4 10.4 81 111-192 1-88 (88)
19 KOG0710 Molecular chaperone (s 99.8 1.9E-18 4.2E-23 143.7 7.6 102 105-207 82-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 1.1E-16 2.3E-21 117.9 10.5 80 112-192 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.6 2.9E-15 6.4E-20 122.3 11.2 97 108-205 63-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 3.3E-14 7.1E-19 98.1 10.7 80 112-192 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.6E-11 3.5E-16 86.7 9.0 70 113-195 2-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 1.3E-09 2.7E-14 89.0 10.4 78 106-196 90-171 (177)
25 cd06463 p23_like Proteins cont 99.0 2.5E-09 5.3E-14 75.2 9.3 75 113-195 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 3.1E-08 6.8E-13 70.5 8.5 77 111-195 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 3.9E-06 8.5E-11 58.3 12.4 77 108-192 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 3.3E-05 7.1E-10 58.0 10.6 78 108-194 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.1 5.3E-05 1.1E-09 54.2 9.7 77 111-195 1-77 (84)
30 PF08190 PIH1: pre-RNA process 98.0 2.6E-05 5.7E-10 68.7 8.9 65 116-191 260-327 (328)
31 cd06468 p23_CacyBP p23_like do 97.9 0.00025 5.5E-09 51.3 10.7 79 109-195 3-85 (92)
32 cd06467 p23_NUDC_like p23_like 97.9 0.00015 3.3E-09 51.6 8.9 74 111-195 2-77 (85)
33 cd06488 p23_melusin_like p23_l 97.8 0.00038 8.3E-09 50.3 10.1 78 110-195 3-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.7 0.00064 1.4E-08 48.9 9.7 75 111-196 2-78 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.4 0.0023 5E-08 47.2 9.7 78 106-195 4-83 (93)
36 cd00237 p23 p23 binds heat sho 97.3 0.0054 1.2E-07 46.3 10.9 78 108-195 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.7 0.013 2.7E-07 52.9 9.5 81 107-195 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.3 0.02 4.3E-07 47.2 7.3 79 107-193 3-81 (196)
39 cd06492 p23_mNUDC_like p23-lik 96.1 0.088 1.9E-06 38.1 9.6 73 112-195 3-79 (87)
40 cd06495 p23_NUDCD3_like p23-li 96.1 0.14 3.1E-06 38.3 10.8 81 106-194 3-86 (102)
41 cd06490 p23_NCB5OR p23_like do 96.1 0.12 2.6E-06 37.3 10.1 76 110-195 1-80 (87)
42 KOG3158 HSP90 co-chaperone p23 86.6 2.6 5.7E-05 34.6 6.4 80 106-195 6-85 (180)
43 KOG2265 Nuclear distribution p 82.3 14 0.00031 30.3 8.9 79 106-195 17-97 (179)
44 PF14913 DPCD: DPCD protein fa 78.2 20 0.00044 29.9 8.6 77 106-194 85-170 (194)
45 PF00347 Ribosomal_L6: Ribosom 77.3 6.5 0.00014 26.9 4.8 47 130-192 2-48 (77)
46 COG5091 SGT1 Suppressor of G2 75.8 1.5 3.3E-05 38.8 1.5 82 106-194 175-256 (368)
47 PF13349 DUF4097: Domain of un 75.6 33 0.00072 26.5 9.1 79 107-190 65-148 (166)
48 KOG1667 Zn2+-binding protein M 75.0 15 0.00032 32.2 7.2 81 109-196 216-296 (320)
49 cd06477 ACD_HspB3_Like Alpha c 72.3 8.4 0.00018 27.6 4.4 30 118-147 51-82 (83)
50 cd06471 ACD_LpsHSP_like Group 71.1 8.2 0.00018 27.5 4.2 31 116-146 61-91 (93)
51 cd06464 ACD_sHsps-like Alpha-c 68.8 14 0.00031 25.2 5.0 33 115-147 54-87 (88)
52 cd06482 ACD_HspB10 Alpha cryst 65.9 15 0.00033 26.5 4.7 34 160-195 9-42 (87)
53 PF00011 HSP20: Hsp20/alpha cr 65.8 15 0.00033 26.3 4.8 37 116-152 54-91 (102)
54 cd06526 metazoan_ACD Alpha-cry 64.5 13 0.00028 26.1 4.0 31 117-147 50-82 (83)
55 PF12992 DUF3876: Domain of un 64.1 26 0.00056 25.9 5.7 41 106-146 24-69 (95)
56 cd06472 ACD_ScHsp26_like Alpha 63.5 14 0.00031 26.3 4.2 31 116-146 59-90 (92)
57 cd06469 p23_DYX1C1_like p23_li 63.4 23 0.0005 24.0 5.1 33 117-149 36-69 (78)
58 PF04972 BON: BON domain; Int 62.2 14 0.00029 24.3 3.6 26 126-151 12-37 (64)
59 PRK10743 heat shock protein Ib 61.4 31 0.00066 27.0 6.0 29 165-195 51-79 (137)
60 COG4004 Uncharacterized protei 61.1 40 0.00086 24.9 6.0 34 110-147 26-59 (96)
61 KOG3260 Calcyclin-binding prot 60.7 26 0.00057 29.2 5.6 76 111-194 78-154 (224)
62 cd06481 ACD_HspB9_like Alpha c 60.4 15 0.00033 26.3 3.8 31 116-146 53-85 (87)
63 cd06478 ACD_HspB4-5-6 Alpha-cr 57.5 43 0.00092 23.6 5.7 32 160-193 8-39 (83)
64 cd06480 ACD_HspB8_like Alpha-c 55.9 25 0.00054 25.6 4.4 31 117-147 58-90 (91)
65 cd06476 ACD_HspB2_like Alpha c 55.1 43 0.00094 23.7 5.4 33 159-193 7-39 (83)
66 PTZ00027 60S ribosomal protein 53.7 52 0.0011 27.3 6.4 47 130-191 13-59 (190)
67 cd06497 ACD_alphaA-crystallin_ 53.7 52 0.0011 23.4 5.7 32 160-193 11-42 (86)
68 PRK11597 heat shock chaperone 52.2 51 0.0011 26.0 5.9 28 165-194 49-76 (142)
69 PRK05518 rpl6p 50S ribosomal p 52.0 81 0.0018 25.9 7.3 45 130-191 13-57 (180)
70 cd06498 ACD_alphaB-crystallin_ 51.4 30 0.00066 24.5 4.1 30 118-147 51-82 (84)
71 cd06479 ACD_HspB7_like Alpha c 50.7 41 0.00088 23.8 4.7 32 160-193 9-40 (81)
72 cd06470 ACD_IbpA-B_like Alpha- 50.6 42 0.00091 23.9 4.8 35 160-196 12-46 (90)
73 PF01954 DUF104: Protein of un 49.8 15 0.00033 24.8 2.2 17 175-191 3-19 (60)
74 cd06463 p23_like Proteins cont 49.3 50 0.0011 21.9 4.9 35 116-150 40-75 (84)
75 TIGR03653 arch_L6P archaeal ri 49.1 1.1E+02 0.0023 25.0 7.5 45 130-191 7-51 (170)
76 TIGR03654 L6_bact ribosomal pr 48.9 83 0.0018 25.6 6.8 44 130-191 11-54 (175)
77 COG0071 IbpA Molecular chapero 48.5 43 0.00093 26.1 5.0 35 117-151 100-135 (146)
78 PTZ00179 60S ribosomal protein 47.9 75 0.0016 26.3 6.5 47 130-191 12-58 (189)
79 cd00298 ACD_sHsps_p23-like Thi 47.4 45 0.00098 21.4 4.4 32 116-147 47-79 (80)
80 PRK05498 rplF 50S ribosomal pr 47.0 85 0.0018 25.5 6.7 44 130-191 12-55 (178)
81 COG4856 Uncharacterized protei 45.6 1.3E+02 0.0028 27.9 8.0 80 107-194 51-136 (403)
82 KOG3591 Alpha crystallins [Pos 43.0 50 0.0011 27.0 4.7 33 119-151 117-151 (173)
83 PF08308 PEGA: PEGA domain; I 42.0 88 0.0019 20.8 5.2 40 109-148 26-67 (71)
84 PRK10568 periplasmic protein; 38.9 2E+02 0.0042 23.8 7.7 25 126-150 73-97 (203)
85 CHL00140 rpl6 ribosomal protei 38.8 1.3E+02 0.0027 24.6 6.4 44 130-191 12-55 (178)
86 PF14730 DUF4468: Domain of un 38.1 1.5E+02 0.0032 21.1 6.3 18 175-192 68-85 (91)
87 cd06475 ACD_HspB1_like Alpha c 36.4 1.1E+02 0.0023 21.7 5.0 33 160-194 11-43 (86)
88 cd01759 PLAT_PL PLAT/LH2 domai 35.9 1.8E+02 0.0039 22.0 6.5 35 159-193 44-78 (113)
89 PF05455 GvpH: GvpH; InterPro 34.1 1.5E+02 0.0032 24.5 6.1 38 115-152 134-171 (177)
90 PRK13726 conjugal transfer pil 32.7 1E+02 0.0023 25.4 5.1 51 131-192 131-181 (188)
91 PF07873 YabP: YabP family; I 31.5 34 0.00074 23.2 1.7 22 127-148 22-43 (66)
92 cd06467 p23_NUDC_like p23_like 31.2 1.1E+02 0.0023 20.9 4.3 30 161-191 10-39 (85)
93 PRK11198 LysM domain/BON super 28.5 62 0.0013 25.4 3.0 26 126-151 38-63 (147)
94 PF08845 SymE_toxin: Toxin Sym 27.9 89 0.0019 20.8 3.2 21 125-145 35-56 (57)
95 KOG3413 Mitochondrial matrix p 27.3 29 0.00063 27.8 0.8 25 167-192 65-89 (156)
96 TIGR02856 spore_yqfC sporulati 27.1 48 0.001 23.8 1.9 24 125-148 38-61 (85)
97 TIGR02892 spore_yabP sporulati 26.8 49 0.0011 23.9 1.9 22 127-148 21-42 (85)
98 KOG3247 Uncharacterized conser 26.8 30 0.00065 32.3 1.0 77 107-195 3-81 (466)
99 PF06964 Alpha-L-AF_C: Alpha-L 25.7 1.8E+02 0.0039 23.1 5.3 27 166-193 150-176 (177)
100 PF01491 Frataxin_Cyay: Fratax 25.5 84 0.0018 23.5 3.1 18 175-192 30-47 (109)
101 cd00503 Frataxin Frataxin is a 25.4 71 0.0015 23.8 2.6 18 175-192 28-45 (105)
102 COG0097 RplF Ribosomal protein 25.2 1.3E+02 0.0027 24.9 4.2 47 128-191 10-56 (178)
103 cd06494 p23_NUDCD2_like p23-li 25.0 1.5E+02 0.0032 21.5 4.2 29 161-190 17-45 (93)
104 PF10988 DUF2807: Protein of u 23.8 1.2E+02 0.0027 23.7 4.0 27 165-193 25-51 (181)
105 PRK00446 cyaY frataxin-like pr 23.7 71 0.0015 23.9 2.4 18 176-193 28-45 (105)
106 TIGR03000 plancto_dom_1 Planct 23.1 2.4E+02 0.0052 20.0 4.8 57 120-192 4-61 (75)
107 TIGR03421 FeS_CyaY iron donor 23.0 71 0.0015 23.7 2.2 17 176-192 26-42 (102)
108 TIGR00251 conserved hypothetic 22.7 2E+02 0.0044 20.8 4.5 37 112-149 1-40 (87)
109 PF05309 TraE: TraE protein; 22.4 1.5E+02 0.0033 24.0 4.3 49 130-189 130-178 (187)
110 PF10988 DUF2807: Protein of u 21.6 88 0.0019 24.5 2.7 31 117-147 19-49 (181)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=1.2e-25 Score=177.13 Aligned_cols=116 Identities=16% Similarity=0.324 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCCCCCCCC-CccceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc------cee
Q 028577 86 VLNFMDQMTESPFFSGTRG-GLRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EES 157 (207)
Q Consensus 86 l~~~md~~~~~~~~~~~~~-~~~p~~di~e-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~ 157 (207)
+...|+++|+..+.....+ +..|++||++ ++++|.|+++|||++|+||+|++++|.|+|+|+++.+.++ |+.
T Consensus 12 ~~~~~d~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~ 91 (137)
T PRK10743 12 SAIGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIA 91 (137)
T ss_pred cccCHHHHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEE
Confidence 3344555555444322111 2348999995 8999999999999999999999999999999997654333 345
Q ss_pred eeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCcCcc-cCCceeEe
Q 028577 158 VRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE-ERADVFQV 204 (207)
Q Consensus 158 ~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~~~-~~~~~i~I 204 (207)
+++|+|+|.||.+| +.+ +|+|+||||+|+|||.+++ .+++.|.|
T Consensus 92 ~g~F~R~~~LP~~V-d~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I 136 (137)
T PRK10743 92 ERNFERKFQLAENI-HVR--GANLVNGLLYIDLERVIPEAKKPRRIEI 136 (137)
T ss_pred CCEEEEEEECCCCc-ccC--cCEEeCCEEEEEEeCCCccccCCeEEee
Confidence 67999999999999 888 5999999999999997433 33445554
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.93 E-value=8.8e-25 Score=173.07 Aligned_cols=97 Identities=14% Similarity=0.320 Sum_probs=81.6
Q ss_pred ccceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc------ceeeeEEEEEEECCCCCCCCCceE
Q 028577 106 LRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EESVRRYTSRIDLPEKLYRTDQIK 178 (207)
Q Consensus 106 ~~p~~di~e-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~f~r~i~LP~~v~d~~~ik 178 (207)
..|++||+| ++++|+|+++|||++++||+|++++|.|+|+|+++.+.++ |+.++.|+|+|.||.+| |.+ +
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~v-d~~--~ 107 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENM-EVS--G 107 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCc-ccC--c
Confidence 568999998 5789999999999999999999999999999997643332 34567999999999999 887 7
Q ss_pred EEEeCCEEEEEEeCcCc-ccCCceeEee
Q 028577 179 AEMKNGVLKVTVPKVKE-EERADVFQVK 205 (207)
Q Consensus 179 A~~~nGvL~I~lPK~~~-~~~~~~i~I~ 205 (207)
|+|+||||+|+|||..+ ..+++.|.|+
T Consensus 108 A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 108 ATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred CEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 99999999999999743 3455666664
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-24 Score=169.42 Aligned_cols=98 Identities=39% Similarity=0.641 Sum_probs=85.1
Q ss_pred ccceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccc--c------ceeeeEEEEEEECCCCCCCCCce
Q 028577 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE--G------EESVRRYTSRIDLPEKLYRTDQI 177 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~--~------e~~~~~f~r~i~LP~~v~d~~~i 177 (207)
..|++||++++++|+|.++|||++++||+|+++++.|+|+|++..+.+ . +..++.|+|+|.||..| +++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v-~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc-cccce
Confidence 689999999999999999999999999999999999999999875322 1 34578999999999999 89999
Q ss_pred EEEEeCCEEEEEEeCcCccc-CCceeEe
Q 028577 178 KAEMKNGVLKVTVPKVKEEE-RADVFQV 204 (207)
Q Consensus 178 kA~~~nGvL~I~lPK~~~~~-~~~~i~I 204 (207)
+|+|+||+|+|+|||.+++. +++.|.|
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred eeEeeCcEEEEEEeccccccccCceeec
Confidence 99999999999999987764 2334443
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.88 E-value=4.1e-22 Score=146.48 Aligned_cols=83 Identities=48% Similarity=0.672 Sum_probs=73.9
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEEC-CEEEEEeeecccccc--------ceeeeEEEEEEECCCCCCCCCceEE
Q 028577 109 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEG--------EESVRRYTSRIDLPEKLYRTDQIKA 179 (207)
Q Consensus 109 ~~di~e~~d~y~l~vdLPG~~kedI~V~v~~-~~L~I~g~~~~~~~~--------e~~~~~f~r~i~LP~~v~d~~~ikA 179 (207)
.+||+|++++|.|.++|||++++||+|++++ +.|+|+|++..+... ++.++.|.|+|.||.++ +.+.|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v-~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENA-DADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCC-CHHHCEE
Confidence 3789999999999999999999999999997 499999987643221 34567999999999999 9999999
Q ss_pred EEeCCEEEEEEeC
Q 028577 180 EMKNGVLKVTVPK 192 (207)
Q Consensus 180 ~~~nGvL~I~lPK 192 (207)
+|+||+|+|++||
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999998
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.88 E-value=5.8e-22 Score=144.54 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=73.2
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEE-eCCEEEE
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKV 188 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGvL~I 188 (207)
+|.+++++|.|.++|||++++||+|++++|.|+|+|++....++ ....+.|+|+|.||.+| |.++|+|+| +||+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~V-d~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNV-DQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCCEEEE
Confidence 69999999999999999999999999999999999987644333 33456899999999999 999999999 8999999
Q ss_pred EEeC
Q 028577 189 TVPK 192 (207)
Q Consensus 189 ~lPK 192 (207)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 6
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.87 E-value=1.8e-21 Score=140.94 Aligned_cols=81 Identities=19% Similarity=0.398 Sum_probs=72.2
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEE-eCCEEEE
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKV 188 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGvL~I 188 (207)
+|.+++++|.|.++|||++++||+|++++|.|+|+|++....++ ....+.|+|+|.||.+| |.++|+|+| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGV-DPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCc-ChHHeEEEECCCCEEEE
Confidence 47889999999999999999999999999999999987643332 33457899999999999 999999999 7999999
Q ss_pred EEeC
Q 028577 189 TVPK 192 (207)
Q Consensus 189 ~lPK 192 (207)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.86 E-value=3.2e-21 Score=143.35 Aligned_cols=93 Identities=39% Similarity=0.694 Sum_probs=74.1
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc------ceeeeEEEEEEECCCCCCCCCceEEEEeCC
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EESVRRYTSRIDLPEKLYRTDQIKAEMKNG 184 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~f~r~i~LP~~v~d~~~ikA~~~nG 184 (207)
||.+++++|.|.++|||+.+++|+|+++++.|+|+|++.....+ +...+.|.++|.||.++ |.+.|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEecCC
Confidence 78999999999999999999999999999999999998822222 23457999999999999 999999999999
Q ss_pred EEEEEEeCcCcccC--CceeEe
Q 028577 185 VLKVTVPKVKEEER--ADVFQV 204 (207)
Q Consensus 185 vL~I~lPK~~~~~~--~~~i~I 204 (207)
+|+|++||....+. ++.|+|
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-E
T ss_pred EEEEEEEccccccCCCCeEEEe
Confidence 99999999987754 444544
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.86 E-value=1.5e-21 Score=140.85 Aligned_cols=79 Identities=18% Similarity=0.419 Sum_probs=73.0
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEE-eCCEEEEE
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVT 189 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGvL~I~ 189 (207)
||.|++++|.|.++|||++|+||+|++++|.|+|+|+++.+. +...++|+|+|.||.+| |++.|+|.| +||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~--~~~~g~F~R~~~LP~~v-d~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD--GTVMNTFTHKCQLPEDV-DPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC--CCEEEEEEEEEECCCCc-CHHHeEEEecCCCEEEEE
Confidence 689999999999999999999999999999999999976433 45679999999999999 999999997 99999999
Q ss_pred EeC
Q 028577 190 VPK 192 (207)
Q Consensus 190 lPK 192 (207)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.86 E-value=2.2e-21 Score=140.86 Aligned_cols=81 Identities=17% Similarity=0.371 Sum_probs=72.4
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEEe-CCEEEEE
Q 028577 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 189 (207)
Q Consensus 112 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~~-nGvL~I~ 189 (207)
+.+++++|.|.++|||++++||+|++++|.|+|+|+++.+.++ ....+.|+|+|.||.+| |.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADV-DPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHcEEEeCCCCEEEEE
Confidence 5788999999999999999999999999999999987654433 34567899999999999 9999999995 9999999
Q ss_pred EeCc
Q 028577 190 VPKV 193 (207)
Q Consensus 190 lPK~ 193 (207)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9984
No 10
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.86 E-value=3.1e-21 Score=141.75 Aligned_cols=83 Identities=34% Similarity=0.570 Sum_probs=73.9
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc----------ceeeeEEEEEEECCCCCCCCCce
Q 028577 108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG----------EESVRRYTSRIDLPEKLYRTDQI 177 (207)
Q Consensus 108 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~----------e~~~~~f~r~i~LP~~v~d~~~i 177 (207)
+.+||+|++++|+|.++|||++++||+|+++++.|+|+|+++...+. ++..++|.|+|.|| ++ +.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v-~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NV-DEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CC-CHHHC
Confidence 35899999999999999999999999999999999999998753221 23567899999999 68 89999
Q ss_pred EEEEeCCEEEEEEeC
Q 028577 178 KAEMKNGVLKVTVPK 192 (207)
Q Consensus 178 kA~~~nGvL~I~lPK 192 (207)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.85 E-value=6.8e-21 Score=138.86 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=73.2
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEEe-CCEEE
Q 028577 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLK 187 (207)
Q Consensus 110 ~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~~-nGvL~ 187 (207)
.+|+|++++|.|.++|||+++++|+|+++++.|+|+|++..+.+. ....++|+|+|.||.+| |.++|+|+|+ ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~v-d~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGV-DPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCC-CHHHcEEEECCCCeEE
Confidence 479999999999999999999999999999999999998654332 33467999999999999 9999999996 99999
Q ss_pred EEEe
Q 028577 188 VTVP 191 (207)
Q Consensus 188 I~lP 191 (207)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 12
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.85 E-value=1.3e-20 Score=138.15 Aligned_cols=82 Identities=18% Similarity=0.487 Sum_probs=72.5
Q ss_pred ceeeEEEcC-CeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-------ceeeeEEEEEEECCCCCCCCCceEE
Q 028577 108 RGWDAKETD-DALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-------EESVRRYTSRIDLPEKLYRTDQIKA 179 (207)
Q Consensus 108 p~~di~e~~-d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~f~r~i~LP~~v~d~~~ikA 179 (207)
|++||+|++ ++|+|.++|||+++++|+|.++++.|+|+|+++...+. +...+.|.|+|.||.++ +. ++|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~v-d~--~~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHV-KV--KGA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCc-eE--Cee
Confidence 679999975 99999999999999999999999999999998765432 33468999999999998 65 489
Q ss_pred EEeCCEEEEEEeC
Q 028577 180 EMKNGVLKVTVPK 192 (207)
Q Consensus 180 ~~~nGvL~I~lPK 192 (207)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.85 E-value=1.2e-20 Score=136.79 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=71.3
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEEe-CCEEEEE
Q 028577 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 189 (207)
Q Consensus 112 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~~-nGvL~I~ 189 (207)
+.-++++|.|.++|||++++||+|++++|.|+|+|+++...+. +...+.|+|+|.||.+| |+++|+|.|. ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDV-DPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCC-ChhhEEEEecCCCEEEEE
Confidence 4557899999999999999999999999999999998654332 45578999999999999 9999999995 9999999
Q ss_pred EeC
Q 028577 190 VPK 192 (207)
Q Consensus 190 lPK 192 (207)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=6.2e-20 Score=133.03 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=69.9
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccc-ccceeeeEEEEEEECCCCCCCCCceEEEE-eCCEEEEEE
Q 028577 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEG-EGEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTV 190 (207)
Q Consensus 113 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~-~~e~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGvL~I~l 190 (207)
.|++++|.|+++|||++|+||+|+++++.|+|+|++..+. +.+...++|+|+|.||.+| +.++|+|.| +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~V-d~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGV-EHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-chheEEEEEcCCCEEEEEe
Confidence 4678999999999999999999999999999999987643 3344567999999999999 999999998 899999997
Q ss_pred e
Q 028577 191 P 191 (207)
Q Consensus 191 P 191 (207)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.82 E-value=1.1e-19 Score=132.85 Aligned_cols=78 Identities=23% Similarity=0.545 Sum_probs=69.2
Q ss_pred EcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccc-----eeeeEEEEEEECCCCCCCCCceEEEE-eCCEEE
Q 028577 114 ETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGE-----ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLK 187 (207)
Q Consensus 114 e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e-----~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGvL~ 187 (207)
+.++.|.|.++|||++++||+|++++|.|+|+|++..+.+.+ ...+.|+|+|.||.+| |.+.|+|.| +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~V-d~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHV-DPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCc-ChHHeEEEeCCCceEE
Confidence 456899999999999999999999999999999976543321 3468999999999999 999999999 999999
Q ss_pred EEEeC
Q 028577 188 VTVPK 192 (207)
Q Consensus 188 I~lPK 192 (207)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99995
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.81 E-value=1.4e-19 Score=130.71 Aligned_cols=76 Identities=28% Similarity=0.601 Sum_probs=69.3
Q ss_pred CCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccc-cceeeeEEEEEEECCCCCCCCCceEEEEeC-CEEEEEEeC
Q 028577 116 DDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE-GEESVRRYTSRIDLPEKLYRTDQIKAEMKN-GVLKVTVPK 192 (207)
Q Consensus 116 ~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~f~r~i~LP~~v~d~~~ikA~~~n-GvL~I~lPK 192 (207)
+++|.|.++||||+++||+|+++++.|+|+|+++...+ .+...+.|.|+|.||.+| |.+.++|.|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-DPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCcEEEEEecC
Confidence 36999999999999999999999999999999876544 345678999999999999 99999999998 999999997
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.80 E-value=4.7e-19 Score=129.51 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=68.6
Q ss_pred EcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc----ceeeeEEEEEEECCCCCCCCCceEEEEeCC-EEEE
Q 028577 114 ETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG----EESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLKV 188 (207)
Q Consensus 114 e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~----e~~~~~f~r~i~LP~~v~d~~~ikA~~~nG-vL~I 188 (207)
-++++|+|.++|||++++||+|++++|.|+|+|+++.+.+. ++.+++|+|+|.||.+| |.++|+|+|+|| +|+|
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~V-d~d~i~A~~~~~~~l~i 83 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGV-DEKDVTYSYGLGSVVKI 83 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCc-ChHHcEEEEcCCCEEEE
Confidence 35789999999999999999999999999999998654332 45688999999999999 999999999777 9999
Q ss_pred EEe
Q 028577 189 TVP 191 (207)
Q Consensus 189 ~lP 191 (207)
.-|
T Consensus 84 ~~~ 86 (87)
T cd06482 84 ETP 86 (87)
T ss_pred eeC
Confidence 877
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=9.2e-19 Score=125.44 Aligned_cols=81 Identities=44% Similarity=0.728 Sum_probs=73.7
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-------ceeeeEEEEEEECCCCCCCCCceEEEEeC
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-------EESVRRYTSRIDLPEKLYRTDQIKAEMKN 183 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~f~r~i~LP~~v~d~~~ikA~~~n 183 (207)
++.|++++|.|.++|||+++++|+|++.++.|.|+|++...... +...+.|.|+|.||..+ +.+.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDV-DPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCc-CHHHcEEEEeC
Confidence 47899999999999999999999999999999999998765432 34578999999999999 99999999999
Q ss_pred CEEEEEEeC
Q 028577 184 GVLKVTVPK 192 (207)
Q Consensus 184 GvL~I~lPK 192 (207)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-18 Score=143.70 Aligned_cols=102 Identities=43% Similarity=0.742 Sum_probs=89.8
Q ss_pred CccceeeEEEcCCeEEEEEEcCCCCccceEEEEECC-EEEEEeeecccccc----------ceeeeEEEEEEECCCCCCC
Q 028577 105 GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQN-TLVIRGEGGKEGEG----------EESVRRYTSRIDLPEKLYR 173 (207)
Q Consensus 105 ~~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~-~L~I~g~~~~~~~~----------e~~~~~f~r~i~LP~~v~d 173 (207)
...++|+|.|..++|.+.++|||+++++|+|.++++ +|+|+|++..+.+. ++..+.|.+++.||+++ +
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv-~ 160 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV-D 160 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccc-c
Confidence 467889999999999999999999999999999987 79999998766543 34567999999999999 9
Q ss_pred CCceEEEEeCCEEEEEEeCcCcc-cCCceeEeecC
Q 028577 174 TDQIKAEMKNGVLKVTVPKVKEE-ERADVFQVKVD 207 (207)
Q Consensus 174 ~~~ikA~~~nGvL~I~lPK~~~~-~~~~~i~I~Ie 207 (207)
.+.|+|.|+||||+|++||..+. +++++++|.|.
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 99999999999999999999774 45677777763
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.71 E-value=1.1e-16 Score=117.92 Aligned_cols=80 Identities=14% Similarity=0.367 Sum_probs=71.3
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEEe-CCEEEEE
Q 028577 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 189 (207)
Q Consensus 112 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~~-nGvL~I~ 189 (207)
+..++++|.|.+++.||++|||+|++.++.|+|+|+++.+.++ ....+.|+|+|.||.+| |.+.|+|.+. ||+|+|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~V-d~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEV-DPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCC-CchhEEEEeCCCCeEEEE
Confidence 3456789999999999999999999999999999998865433 34578999999999999 9999999996 9999999
Q ss_pred EeC
Q 028577 190 VPK 192 (207)
Q Consensus 190 lPK 192 (207)
+|.
T Consensus 89 aP~ 91 (91)
T cd06480 89 APQ 91 (91)
T ss_pred cCC
Confidence 983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-15 Score=122.31 Aligned_cols=97 Identities=18% Similarity=0.389 Sum_probs=84.1
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc-ceeeeEEEEEEECCCCCCCCCceEEEE-eCCE
Q 028577 108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGV 185 (207)
Q Consensus 108 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGv 185 (207)
...++..++++|.|.+|+..|++|+|+|++.++.|.|+|++++..++ +...+.|.|++.||.++ |+++|++.+ .||+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~v-dp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDV-DPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCC-ChhheEEeeCCCce
Confidence 34678889999999999999999999999999999999999887544 44578999999999999 999999999 9999
Q ss_pred EEEEEeCcCcccC-CceeEee
Q 028577 186 LKVTVPKVKEEER-ADVFQVK 205 (207)
Q Consensus 186 L~I~lPK~~~~~~-~~~i~I~ 205 (207)
|+|.+||...... .+.|+|+
T Consensus 142 LtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 142 LTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEEccCCCCcCccceEEeEe
Confidence 9999999876543 3445554
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.57 E-value=3.3e-14 Score=98.15 Aligned_cols=80 Identities=39% Similarity=0.697 Sum_probs=73.1
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 112 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
+.++++.|.|++++||+.+++|+|.+.++.|.|+|........+...+.|.+.+.||..+ +++.++|.|.+|+|+|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i-~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV-DPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCc-CHHHCEEEEECCEEEEEEc
Confidence 367889999999999999999999999999999998876555555678999999999999 9999999999999999999
Q ss_pred C
Q 028577 192 K 192 (207)
Q Consensus 192 K 192 (207)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.31 E-value=1.6e-11 Score=86.69 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=65.2
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeC
Q 028577 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 113 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK 192 (207)
.++++.+.|.+++||+++++|+|+++++.|.|++. .|.+.+.||..| +++..+|.+.+|.|.|+|+|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~------------~~~~~~~l~~~I-~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFP------------PYLFELDLAAPI-DDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcCC------------CEEEEEeCcccc-cccccEEEEeCCEEEEEEEe
Confidence 57889999999999999999999999999999882 588999999999 99999999999999999999
Q ss_pred cCc
Q 028577 193 VKE 195 (207)
Q Consensus 193 ~~~ 195 (207)
..+
T Consensus 69 ~~~ 71 (78)
T cd06469 69 KEP 71 (78)
T ss_pred CCC
Confidence 754
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.07 E-value=1.3e-09 Score=88.95 Aligned_cols=78 Identities=29% Similarity=0.557 Sum_probs=64.5
Q ss_pred ccceeeEEEcCC-eEEEEEEcCCCCccc-eEEEEEC--CEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEE
Q 028577 106 LRRGWDAKETDD-ALNLSIDMPGLGKED-VRVSLEQ--NTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM 181 (207)
Q Consensus 106 ~~p~~di~e~~d-~y~l~vdLPG~~ked-I~V~v~~--~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~ 181 (207)
..+.+++.+.++ +++|.++|||+++++ |+|.++. +.|+|+.. .+|.+++.||.. +++.++|+|
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-----------~~~~krv~L~~~--~~e~~~~t~ 156 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-----------EKYLKRVALPWP--DPEITSATF 156 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-----------CceEeeEecCCC--ccceeeEEE
Confidence 467789999877 699999999999888 9999985 55666543 257789999976 479999999
Q ss_pred eCCEEEEEEeCcCcc
Q 028577 182 KNGVLKVTVPKVKEE 196 (207)
Q Consensus 182 ~nGvL~I~lPK~~~~ 196 (207)
+||||+|.|-+.++.
T Consensus 157 nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 157 NNGILEIRIRRTEES 171 (177)
T ss_pred eCceEEEEEeecCCC
Confidence 999999999887654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.03 E-value=2.5e-09 Score=75.19 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=67.4
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeC
Q 028577 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 113 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK 192 (207)
.++++.+.|.+.+||..+++++|.+.++.|.|++... ....|...+.|+..| +++..++.+++|.|.|+|+|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~l~i~L~K 73 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG-------GGKEYLLEGELFGPI-DPEESKWTVEDRKIEITLKK 73 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC-------CCCceEEeeEccCcc-chhhcEEEEeCCEEEEEEEE
Confidence 5788999999999999999999999999999999743 124688889999999 99999999999999999999
Q ss_pred cCc
Q 028577 193 VKE 195 (207)
Q Consensus 193 ~~~ 195 (207)
..+
T Consensus 74 ~~~ 76 (84)
T cd06463 74 KEP 76 (84)
T ss_pred CCC
Confidence 865
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.81 E-value=3.1e-08 Score=70.52 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.3
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEE
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 190 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~l 190 (207)
|++++++.+.|.+.+||+.+++++|.++++.|.|++... ....|.-.+.|+..| +++..++.+.+|.|.|+|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~vei~L 72 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-------GGSEYQLELDLFGPI-DPEQSKVSVLPTKVEITL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-------CCCeEEEeccccccc-CchhcEEEEeCeEEEEEE
Confidence 468899999999999999999999999999999988642 123688889999999 899999999999999999
Q ss_pred eCcCc
Q 028577 191 PKVKE 195 (207)
Q Consensus 191 PK~~~ 195 (207)
.|..+
T Consensus 73 ~K~~~ 77 (84)
T cd06466 73 KKAEP 77 (84)
T ss_pred EcCCC
Confidence 99764
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.54 E-value=3.9e-06 Score=58.28 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=65.5
Q ss_pred ceeeEEEcCCeEEEEEEcCCC--CccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCE
Q 028577 108 RGWDAKETDDALNLSIDMPGL--GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 185 (207)
Q Consensus 108 p~~di~e~~d~y~l~vdLPG~--~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGv 185 (207)
|.+++.++++.+.|.+.+++. ++++|+|.+.++.|.|+...... ..|.-.+.|...| +++..+..+.++.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------~~~~~~~~L~~~I-~~~~s~~~~~~~~ 72 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------KEYLLEGELFGEI-DPDESTWKVKDNK 72 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-------CEEEEEEEBSS-B-ECCCEEEEEETTE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-------ceEEEEEEEeeeE-cchhcEEEEECCE
Confidence 568899999999999999665 59999999999999999763321 3788888999999 9999999999999
Q ss_pred EEEEEeC
Q 028577 186 LKVTVPK 192 (207)
Q Consensus 186 L~I~lPK 192 (207)
|.|+|.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.16 E-value=3.3e-05 Score=58.00 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=68.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEE
Q 028577 108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 187 (207)
Q Consensus 108 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~ 187 (207)
|+++++++.+.+.|.+.+||. ++++|.+..+.|.|++.... ....|.-.+.|...| +++..+..+.++.|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~------~~~~y~~~~~L~~~I-~pe~s~~~v~~~kve 71 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG------GGKKYEFDLEFYKEI-DPEESKYKVTGRQIE 71 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC------CCeeEEEEeEhhhhc-cccccEEEecCCeEE
Confidence 568899999999999999998 88999999999999985321 123577788999999 999999999999999
Q ss_pred EEEeCcC
Q 028577 188 VTVPKVK 194 (207)
Q Consensus 188 I~lPK~~ 194 (207)
|+|.|..
T Consensus 72 I~L~K~~ 78 (108)
T cd06465 72 FVLRKKE 78 (108)
T ss_pred EEEEECC
Confidence 9999986
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.07 E-value=5.3e-05 Score=54.22 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEE
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 190 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~l 190 (207)
|++++++.+.|.+.++|+.+++++|.++++.|.+++.... ...|.-.+.|...| ++++.+.....+-+.|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~-------~~~y~~~~~L~~~I-~p~~s~~~v~~~kiei~L 72 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS-------GNDYSLKLHLLHPI-VPEQSSYKILSTKIEIKL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC-------CCcEEEeeecCcee-cchhcEEEEeCcEEEEEE
Confidence 4678899999999999999999999999999999986421 12477788999999 899888888899999999
Q ss_pred eCcCc
Q 028577 191 PKVKE 195 (207)
Q Consensus 191 PK~~~ 195 (207)
.|...
T Consensus 73 ~K~~~ 77 (84)
T cd06489 73 KKTEA 77 (84)
T ss_pred EcCCC
Confidence 99753
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.03 E-value=2.6e-05 Score=68.75 Aligned_cols=65 Identities=26% Similarity=0.518 Sum_probs=59.2
Q ss_pred CCeEEEEEEcCCC-CccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEE--eCCEEEEEEe
Q 028577 116 DDALNLSIDMPGL-GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM--KNGVLKVTVP 191 (207)
Q Consensus 116 ~d~y~l~vdLPG~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~--~nGvL~I~lP 191 (207)
.+.++|++.|||+ +..+|+|.|.+..|.|..... .|.-.+.||..| +.+..+|.| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------~y~L~l~LP~~V-~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------KYRLDLPLPYPV-DEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------ceEEEccCCCcc-cCCCceEEEccCCCEEEEEEE
Confidence 5789999999999 889999999999999998631 688899999999 999999999 6689999998
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.90 E-value=0.00025 Score=51.35 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=66.3
Q ss_pred eeeEEEcCCeEEEEEEcCCCCc---cceEEEEECCEEEEEeeeccccccceeeeEEEEEEE-CCCCCCCCCceEEEEeCC
Q 028577 109 GWDAKETDDALNLSIDMPGLGK---EDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRID-LPEKLYRTDQIKAEMKNG 184 (207)
Q Consensus 109 ~~di~e~~d~y~l~vdLPG~~k---edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~ikA~~~nG 184 (207)
.+++.++++.+.|.+.+|+..+ ++++|.+..+.|.|++.... ...|.-.+. |-..| +++..+.....+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~-------~~~~~~~~~~L~~~I-~~e~s~~~~~~~ 74 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN-------GKNYRFTINRLLKKI-DPEKSSFKVKTD 74 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC-------CcEEEEEehHhhCcc-CccccEEEEeCC
Confidence 4678999999999999999876 99999999999999985311 124666664 88999 999999999999
Q ss_pred EEEEEEeCcCc
Q 028577 185 VLKVTVPKVKE 195 (207)
Q Consensus 185 vL~I~lPK~~~ 195 (207)
-+.|+|.|.++
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 99999999865
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.87 E-value=0.00015 Score=51.56 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=61.4
Q ss_pred eEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeC-CEEEE
Q 028577 111 DAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKN-GVLKV 188 (207)
Q Consensus 111 di~e~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~n-GvL~I 188 (207)
.+.++++.+.|.+.+| ++.++||+|.+.++.|.|+.... .+.-.-.|...| +++..+..+.+ ..|.|
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~----------~~~l~~~L~~~I-~~~~s~w~~~~~~~v~i 70 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG----------EPLLDGELYAKV-KVDESTWTLEDGKLLEI 70 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC----------CceEcCcccCce-eEcCCEEEEeCCCEEEE
Confidence 5788999999999997 78999999999999999987521 122223588899 89998889999 99999
Q ss_pred EEeCcCc
Q 028577 189 TVPKVKE 195 (207)
Q Consensus 189 ~lPK~~~ 195 (207)
+|+|.++
T Consensus 71 ~L~K~~~ 77 (85)
T cd06467 71 TLEKRNE 77 (85)
T ss_pred EEEECCC
Confidence 9999865
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.79 E-value=0.00038 Score=50.34 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=67.7
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEE
Q 028577 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVT 189 (207)
Q Consensus 110 ~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~ 189 (207)
+|++++++...|.+.+.|+.+++++|.++++.|.|...... ...|.-.+.|-..| +++..+.....+-+.|+
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~l~L~~~I-~~~~s~~~v~~~kvei~ 74 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------NKEFQLDIELWGVI-DVEKSSVNMLPTKVEIK 74 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------CceEEEEeeccceE-ChhHcEEEecCcEEEEE
Confidence 68999999999999999999999999999999998765432 12588888999999 89998888899999999
Q ss_pred EeCcCc
Q 028577 190 VPKVKE 195 (207)
Q Consensus 190 lPK~~~ 195 (207)
|.|..+
T Consensus 75 L~K~~~ 80 (87)
T cd06488 75 LRKAEP 80 (87)
T ss_pred EEeCCC
Confidence 999854
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.68 E-value=0.00064 Score=48.88 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=60.1
Q ss_pred eEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCC-EEEE
Q 028577 111 DAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLKV 188 (207)
Q Consensus 111 di~e~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nG-vL~I 188 (207)
++.++.+.+.|.+.+| |+.++||+|.++.+.|.|...... .+ -.-.|...| +++.-.-.+.+| .|.|
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~---------~~-~~g~L~~~I-~~d~Stw~i~~~~~l~i 70 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQA---------PL-LEGKLYSSI-DHESSTWIIKENKSLEV 70 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCC---------eE-EeCcccCcc-cccCcEEEEeCCCEEEE
Confidence 5788999999999996 999999999999999999763110 12 223788999 899988888777 7999
Q ss_pred EEeCcCcc
Q 028577 189 TVPKVKEE 196 (207)
Q Consensus 189 ~lPK~~~~ 196 (207)
+|.|..+.
T Consensus 71 ~L~K~~~~ 78 (85)
T cd06493 71 SLIKKDEG 78 (85)
T ss_pred EEEECCCC
Confidence 99998643
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.41 E-value=0.0023 Score=47.18 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=63.4
Q ss_pred ccceeeEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCC
Q 028577 106 LRRGWDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNG 184 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nG 184 (207)
..+.+.+.++.+.+.|.+.+| |..+.||+|.+..+.|.|..+.. .-+.. .|...| +++.-.-.+++|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~---------~~l~G--~L~~~I-~~destWtled~ 71 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ---------EVLKG--KLFDSV-VADECTWTLEDR 71 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE---------EEEcC--cccCcc-CcccCEEEEECC
Confidence 356688999999999999998 89999999999999999986311 01111 688999 899988999888
Q ss_pred E-EEEEEeCcCc
Q 028577 185 V-LKVTVPKVKE 195 (207)
Q Consensus 185 v-L~I~lPK~~~ 195 (207)
- |.|+|.|...
T Consensus 72 k~l~I~L~K~~~ 83 (93)
T cd06494 72 KLIRIVLTKSNR 83 (93)
T ss_pred cEEEEEEEeCCC
Confidence 5 8999999753
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.30 E-value=0.0054 Score=46.27 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=63.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEE
Q 028577 108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 187 (207)
Q Consensus 108 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~ 187 (207)
|.+++.+..+.+.|++.+|+ .++++|.++++.|.++|... . ...|.-.+.|=..| +++..+-....--+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~--~-----g~~y~~~l~l~~~I-~pe~Sk~~v~~r~ve 71 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG--D-----NVKIYNEIELYDRV-DPNDSKHKRTDRSIL 71 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC--C-----CcEEEEEEEeeccc-CcccCeEEeCCceEE
Confidence 67889999999999999999 58999999999999998532 1 12466778888888 888877766666788
Q ss_pred EEEeCcCc
Q 028577 188 VTVPKVKE 195 (207)
Q Consensus 188 I~lPK~~~ 195 (207)
|.|.|.++
T Consensus 72 ~~L~K~~~ 79 (106)
T cd00237 72 CCLRKGKE 79 (106)
T ss_pred EEEEeCCC
Confidence 88999754
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.68 E-value=0.013 Score=52.91 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=68.3
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEE
Q 028577 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 186 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL 186 (207)
....|++++++.+.|.|.+.|+.+++++|.+.++.|.|+...... ..|.-.+.|-..| +++..+....-.-+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~-------~~y~~~~~L~~~I-~p~~s~~~v~~~Ki 227 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGE-------DAYHLQPRLFGKI-IPDKCKYEVLSTKI 227 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCC-------cceeecccccccc-cccccEEEEecceE
Confidence 356799999999999999999999999999999999998754321 2466678898999 89998988888899
Q ss_pred EEEEeCcCc
Q 028577 187 KVTVPKVKE 195 (207)
Q Consensus 187 ~I~lPK~~~ 195 (207)
.|+|.|...
T Consensus 228 ei~l~K~~~ 236 (356)
T PLN03088 228 EIRLAKAEP 236 (356)
T ss_pred EEEEecCCC
Confidence 999998753
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.26 E-value=0.02 Score=47.20 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=59.8
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEE
Q 028577 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 186 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL 186 (207)
...+|+++++...+|.+-.+|+.++|+.|.+.++.|.|..+..... .|.-...|-..| .++...-+.----+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~-------~~~l~~~L~~~I-~pe~~s~k~~stKV 74 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGS-------EYNLQLKLYHEI-IPEKSSFKVFSTKV 74 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCch-------hhhhhHHhcccc-cccceeeEeeeeeE
Confidence 4568999999999999999999999999999999999888754221 243334465666 56666665555667
Q ss_pred EEEEeCc
Q 028577 187 KVTVPKV 193 (207)
Q Consensus 187 ~I~lPK~ 193 (207)
.|+|+|.
T Consensus 75 EI~L~K~ 81 (196)
T KOG1309|consen 75 EITLAKA 81 (196)
T ss_pred EEEeccc
Confidence 7777774
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.14 E-value=0.088 Score=38.11 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=56.8
Q ss_pred EEEcCCeEEEEEEcC-C--CCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCC-EEE
Q 028577 112 AKETDDALNLSIDMP-G--LGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLK 187 (207)
Q Consensus 112 i~e~~d~y~l~vdLP-G--~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nG-vL~ 187 (207)
+.++.++..|.+.+| | .++.||+|.+..+.|.|..+... .-+.. .|...| +++.-.-.+++| .|.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~--------~~i~G--~L~~~V-~~des~Wtled~~~l~ 71 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP--------PIIDG--ELYNEV-KVEESSWLIEDGKVVT 71 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc--------eEEeC--cccCcc-cccccEEEEeCCCEEE
Confidence 467788899999996 3 78999999999999998764211 01222 578888 898888889886 899
Q ss_pred EEEeCcCc
Q 028577 188 VTVPKVKE 195 (207)
Q Consensus 188 I~lPK~~~ 195 (207)
|+|-|..+
T Consensus 72 i~L~K~~~ 79 (87)
T cd06492 72 VNLEKINK 79 (87)
T ss_pred EEEEECCC
Confidence 99999854
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.11 E-value=0.14 Score=38.30 Aligned_cols=81 Identities=12% Similarity=0.274 Sum_probs=62.2
Q ss_pred ccceeeEEEcCCeEEEEEEcC-CC-CccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeC
Q 028577 106 LRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKN 183 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLP-G~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~n 183 (207)
....+.+.++.+.+.|++.+| |. +..||+|.+..+.|.|..+..... ..-+.. .|+..| +++.-.-.+++
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~-----~~~i~G--~L~~~V-~~des~Wtled 74 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGE-----KVLMEG--EFTHKI-NTENSLWSLEP 74 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCC-----ceEEeC--cccCcc-cCccceEEEeC
Confidence 456788999999999999999 54 578999999999999887521100 001222 588888 89998888998
Q ss_pred C-EEEEEEeCcC
Q 028577 184 G-VLKVTVPKVK 194 (207)
Q Consensus 184 G-vL~I~lPK~~ 194 (207)
| .|.|+|-|..
T Consensus 75 ~~~l~I~L~K~~ 86 (102)
T cd06495 75 GKCVLLSLSKCS 86 (102)
T ss_pred CCEEEEEEEECC
Confidence 6 5899999974
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.10 E-value=0.12 Score=37.27 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=57.6
Q ss_pred eeEEEcCCeEEEEEEcCC--CCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEe--CCE
Q 028577 110 WDAKETDDALNLSIDMPG--LGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMK--NGV 185 (207)
Q Consensus 110 ~di~e~~d~y~l~vdLPG--~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~--nGv 185 (207)
.|++++++...|.+-..+ ..++++.+....+.|.|+.... ...|...+.|-..| +++. +..+. -|-
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--------~~~~~~~~~L~~~I-~~~~-~~~~~~~~~K 70 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--------DKSYLLHLDLSNEV-QWPC-EVRISTETGK 70 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--------CceEEEeeeccccC-CCCc-EEEEcccCce
Confidence 378999999999999885 5566666776778899986533 12477788898888 7774 55554 789
Q ss_pred EEEEEeCcCc
Q 028577 186 LKVTVPKVKE 195 (207)
Q Consensus 186 L~I~lPK~~~ 195 (207)
++|+|.|.++
T Consensus 71 VEI~L~K~e~ 80 (87)
T cd06490 71 IELVLKKKEP 80 (87)
T ss_pred EEEEEEcCCC
Confidence 9999999754
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=2.6 Score=34.59 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=60.0
Q ss_pred ccceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCE
Q 028577 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 185 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGv 185 (207)
..|.+.+.+..+.+.|++.++-- .+++|.++...|+++|+.... .-.|...|.|=..| |++..+-+-. +-
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~~l~fs~k~~~d------~~~~~~~ief~~eI-dpe~sk~k~~-~r 75 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPSKLTFSCKSGAD------NHKYENEIEFFDEI-DPEKSKHKRT-SR 75 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeeccccEEEEEeccCCC------ceeeEEeeehhhhc-CHhhcccccc-ce
Confidence 45678888899999999999854 567777888899999985421 12577789998899 8988777766 66
Q ss_pred EEEEEeCcCc
Q 028577 186 LKVTVPKVKE 195 (207)
Q Consensus 186 L~I~lPK~~~ 195 (207)
+...++++.+
T Consensus 76 ~if~i~~K~e 85 (180)
T KOG3158|consen 76 SIFCILRKKE 85 (180)
T ss_pred EEEEEEEccc
Confidence 6666665543
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=82.30 E-value=14 Score=30.34 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=59.9
Q ss_pred ccceeeEEEcCCeEEEEEEcC-CC-CccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeC
Q 028577 106 LRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKN 183 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLP-G~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~n 183 (207)
..+.+.+..|=..+.|.|.+| |+ +..+|.+.+....|.|.-+..... -.=.|...| +.+...-.+++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~i----------ldG~L~~~v-k~des~WtiEd 85 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPI----------LDGELSHSV-KVDESTWTIED 85 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCce----------ecCcccccc-ccccceEEecC
Confidence 566778888889999998887 77 888999999999888876543210 011367778 88998899999
Q ss_pred CEEEEEEeCcCc
Q 028577 184 GVLKVTVPKVKE 195 (207)
Q Consensus 184 GvL~I~lPK~~~ 195 (207)
|.+.|++-++..
T Consensus 86 ~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 86 GKMIVILLKKSN 97 (179)
T ss_pred CEEEEEEeeccc
Confidence 988887766544
No 44
>PF14913 DPCD: DPCD protein family
Probab=78.23 E-value=20 Score=29.87 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=59.2
Q ss_pred ccceeeEEEcCCeEEEEE-EcCCCCccceEEEEEC--CEEEEEeeeccccccceeeeEEEEEEECCC------CCCCCCc
Q 028577 106 LRRGWDAKETDDALNLSI-DMPGLGKEDVRVSLEQ--NTLVIRGEGGKEGEGEESVRRYTSRIDLPE------KLYRTDQ 176 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~v-dLPG~~kedI~V~v~~--~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~------~v~d~~~ 176 (207)
..|-+-=..+...|..++ .|| +.++-.+|++++ +.++|+-.-+ .|.+.|.+|+ ++ +.+.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNK----------KYyKk~~IPDl~R~~l~l-~~~~ 152 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNK----------KYYKKFSIPDLDRCGLPL-EQSA 152 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCc----------cceeEecCCcHHhhCCCc-chhh
Confidence 456666677889999998 565 577888888876 5788887532 6888888885 33 6788
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 028577 177 IKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 177 ikA~~~nGvL~I~lPK~~ 194 (207)
++..+.|..|.|+..|..
T Consensus 153 ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 153 LSFAHQNNTLIISYKKPK 170 (194)
T ss_pred ceeeeecCeEEEEecCcH
Confidence 889999999999998853
No 45
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=77.25 E-value=6.5 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=34.0
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeC
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK 192 (207)
|+.|+|+++++.++++|... ..++.||..+ .++...+++.+.+....
T Consensus 2 P~gV~v~~~~~~i~v~G~~g------------~l~~~~~~~v----~v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG------------ELSRPIPPGV----KVEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEETTEEEEESSSS------------EEEEEETTTE----EEEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE------------eEEEECCCCe----eEEEEcCCCceEEEECc
Confidence 57899999999999999642 3556777665 44444678877776653
No 46
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=75.82 E-value=1.5 Score=38.77 Aligned_cols=82 Identities=26% Similarity=0.235 Sum_probs=60.5
Q ss_pred ccceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCE
Q 028577 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 185 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGv 185 (207)
....|+.-++.+...|-+.-|-++.|+|++-+++|+|.|+.+.+.. .-.|.-.+.|-..| .++...-+.---+
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~------~~~~~~~~~Ly~ev-~P~~~s~k~fsK~ 247 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRL------RLWNDITISLYKEV-YPDIRSIKSFSKR 247 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeecccc------chHHHhhhhhhhhc-Ccchhhhhhcchh
Confidence 4556788899999999999999999999999999999999875421 12344456666677 5666655554466
Q ss_pred EEEEEeCcC
Q 028577 186 LKVTVPKVK 194 (207)
Q Consensus 186 L~I~lPK~~ 194 (207)
+.|+|-|..
T Consensus 248 ~e~~l~KV~ 256 (368)
T COG5091 248 VEVHLRKVE 256 (368)
T ss_pred heehhhhhh
Confidence 777777654
No 47
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=75.61 E-value=33 Score=26.52 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=49.7
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccc-ccce--e--eeEEEEEEECCCCCCCCCceEEEE
Q 028577 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEG-EGEE--S--VRRYTSRIDLPEKLYRTDQIKAEM 181 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~-~~e~--~--~~~f~r~i~LP~~v~d~~~ikA~~ 181 (207)
...+.|...++ ..+++.. ..+.++++.++++|.|+.+..... .... . ...-.-.|.||... ..+.++..-
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~-~l~~i~i~~ 139 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDY-KLDKIDIKT 139 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCC-ceeEEEEEe
Confidence 34566666543 3344444 222799999999999998722111 1111 0 12334567899987 678999999
Q ss_pred eCCEEEEEE
Q 028577 182 KNGVLKVTV 190 (207)
Q Consensus 182 ~nGvL~I~l 190 (207)
.+|-+.|.=
T Consensus 140 ~~G~i~i~~ 148 (166)
T PF13349_consen 140 SSGDITIED 148 (166)
T ss_pred ccccEEEEc
Confidence 999888753
No 48
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=74.99 E-value=15 Score=32.20 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=68.2
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEE
Q 028577 109 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKV 188 (207)
Q Consensus 109 ~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I 188 (207)
..|+..++..++|.|..-|.-++.-.|..++..|.|...... ...+|...+.|=.-| +++...+.|-.--.+|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~------gna~fd~d~kLwgvv-nve~s~v~m~~tkVEI 288 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF------GNASFDLDYKLWGVV-NVEESSVVMGETKVEI 288 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC------CCceeeccceeeeee-chhhceEEeecceEEE
Confidence 458999999999999999999999999999999998876532 224788888886666 8999999998889999
Q ss_pred EEeCcCcc
Q 028577 189 TVPKVKEE 196 (207)
Q Consensus 189 ~lPK~~~~ 196 (207)
+|+|.++-
T Consensus 289 sl~k~ep~ 296 (320)
T KOG1667|consen 289 SLKKAEPG 296 (320)
T ss_pred EEeccCCC
Confidence 99998654
No 49
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=72.34 E-value=8.4 Score=27.57 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=26.9
Q ss_pred eEEEEEEcC-CCCccceEEEE-ECCEEEEEee
Q 028577 118 ALNLSIDMP-GLGKEDVRVSL-EQNTLVIRGE 147 (207)
Q Consensus 118 ~y~l~vdLP-G~~kedI~V~v-~~~~L~I~g~ 147 (207)
.|.=.+.|| +++.+.|+=.+ ++|.|+|.|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 677789999 89999999997 7999999985
No 50
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=71.09 E-value=8.2 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=27.1
Q ss_pred CCeEEEEEEcCCCCccceEEEEECCEEEEEe
Q 028577 116 DDALNLSIDMPGLGKEDVRVSLEQNTLVIRG 146 (207)
Q Consensus 116 ~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g 146 (207)
-..|.-.+.||.+..+.++-++++|.|+|+.
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 3567777899999999999999999999985
No 51
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=68.82 E-value=14 Score=25.21 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.1
Q ss_pred cCCeEEEEEEcC-CCCccceEEEEECCEEEEEee
Q 028577 115 TDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGE 147 (207)
Q Consensus 115 ~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~ 147 (207)
....|.-.+.|| +++.+.++..+.+|.|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 357899999999 679999999999999999863
No 52
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=65.86 E-value=15 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCcCc
Q 028577 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 195 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~~ 195 (207)
.|.-.+.||. + +.+.|+-++.+|.|+|..-+...
T Consensus 9 ~~~v~adlPG-~-~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVCG-F-EPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEecc
Confidence 5666678984 6 89999999999999999987543
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.82 E-value=15 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCeEEEEEEcC-CCCccceEEEEECCEEEEEeeecccc
Q 028577 116 DDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEG 152 (207)
Q Consensus 116 ~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~ 152 (207)
...|.-.+.|| +++.+.|+-.+++|.|+|+..+....
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred cceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 34677789999 68999999999999999999766543
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=64.53 E-value=13 Score=26.06 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=27.4
Q ss_pred CeEEEEEEcC-CCCccceEEEEEC-CEEEEEee
Q 028577 117 DALNLSIDMP-GLGKEDVRVSLEQ-NTLVIRGE 147 (207)
Q Consensus 117 d~y~l~vdLP-G~~kedI~V~v~~-~~L~I~g~ 147 (207)
..|.-.+.|| +++++.|+-.+.+ |.|+|++.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 4788889999 6899999999998 99999874
No 55
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=64.07 E-value=26 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=34.5
Q ss_pred ccceeeEEEcCCeEEEEEEcCCC-----CccceEEEEECCEEEEEe
Q 028577 106 LRRGWDAKETDDALNLSIDMPGL-----GKEDVRVSLEQNTLVIRG 146 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~vdLPG~-----~kedI~V~v~~~~L~I~g 146 (207)
..|.+.|+++++.|.|.+--+.- .++...|.-+++.|.|.-
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~ 69 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIET 69 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEec
Confidence 57999999999999999866553 778888888888888875
No 56
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=63.53 E-value=14 Score=26.27 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=28.0
Q ss_pred CCeEEEEEEcC-CCCccceEEEEECCEEEEEe
Q 028577 116 DDALNLSIDMP-GLGKEDVRVSLEQNTLVIRG 146 (207)
Q Consensus 116 ~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g 146 (207)
...|.-.+.|| +++.+.|+-.+++|.|+|+.
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 46899999999 68999999999999999985
No 57
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=63.39 E-value=23 Score=23.97 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=28.8
Q ss_pred CeEEEEEEcCC-CCccceEEEEECCEEEEEeeec
Q 028577 117 DALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGG 149 (207)
Q Consensus 117 d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~ 149 (207)
+.|.+.++||+ +++++.+..+.++.|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 56999999996 6999999999999999997654
No 58
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=62.18 E-value=14 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCCCccceEEEEECCEEEEEeeeccc
Q 028577 126 PGLGKEDVRVSLEQNTLVIRGEGGKE 151 (207)
Q Consensus 126 PG~~kedI~V~v~~~~L~I~g~~~~~ 151 (207)
++++..+|+|.+.++.++|+|.....
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSC
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHH
Confidence 46777799999999999999987544
No 59
>PRK10743 heat shock protein IbpA; Provisional
Probab=61.45 E-value=31 Score=27.03 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=23.7
Q ss_pred EECCCCCCCCCceEEEEeCCEEEEEEeCcCc
Q 028577 165 IDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 195 (207)
Q Consensus 165 i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~~ 195 (207)
..|| ++ +.+.|+-++++|+|+|..-+..+
T Consensus 51 aelP-Gv-~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 51 IAVA-GF-AESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EECC-CC-CHHHeEEEEECCEEEEEEEECcc
Confidence 4488 57 89999999999999999866543
No 60
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.06 E-value=40 Score=24.91 Aligned_cols=34 Identities=21% Similarity=0.567 Sum_probs=28.0
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEee
Q 028577 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 147 (207)
Q Consensus 110 ~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~ 147 (207)
|.+.+++| .|....||.+ .|.|..++..|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEecc
Confidence 56888888 6778899986 5888889999999984
No 61
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=60.73 E-value=26 Score=29.20 Aligned_cols=76 Identities=14% Similarity=0.297 Sum_probs=55.5
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEE-ECCCCCCCCCceEEEEeCCEEEEE
Q 028577 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRI-DLPEKLYRTDQIKAEMKNGVLKVT 189 (207)
Q Consensus 111 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i-~LP~~v~d~~~ikA~~~nGvL~I~ 189 (207)
-+-+.++...+.+.|-|+..|.|+|++..+.|-|+...-. +..|.-.+ .|-..| ++++-+-..+-....|.
T Consensus 78 gWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlq-------GK~y~~~vnnLlk~I-~vEks~~kvKtd~v~I~ 149 (224)
T KOG3260|consen 78 GWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQ-------GKNYRMIVNNLLKPI-SVEKSSKKVKTDTVLIL 149 (224)
T ss_pred CccccCCeeEEEEEeecccccceeEEecccceeeeeeecC-------Ccceeeehhhhcccc-ChhhcccccccceEEEe
Confidence 4556778889999999999999999999998888764221 12454444 355666 77777777777777788
Q ss_pred EeCcC
Q 028577 190 VPKVK 194 (207)
Q Consensus 190 lPK~~ 194 (207)
+.|.+
T Consensus 150 ~kkVe 154 (224)
T KOG3260|consen 150 CKKVE 154 (224)
T ss_pred ehhhh
Confidence 86654
No 62
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=60.40 E-value=15 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.7
Q ss_pred CCeEEEEEEcC-CCCccceEEEE-ECCEEEEEe
Q 028577 116 DDALNLSIDMP-GLGKEDVRVSL-EQNTLVIRG 146 (207)
Q Consensus 116 ~d~y~l~vdLP-G~~kedI~V~v-~~~~L~I~g 146 (207)
...|.=.+.|| +++.+.|+-.+ .+|.|+|++
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 35788889999 79999999999 899999986
No 63
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=57.52 E-value=43 Score=23.59 Aligned_cols=32 Identities=6% Similarity=0.325 Sum_probs=27.5
Q ss_pred EEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
.|.-.+.|| ++ +++.|+-++.+|.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~-~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HF-SPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CC-CHHHeEEEEECCEEEEEEEEc
Confidence 677788898 46 899999999999999998654
No 64
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=55.90 E-value=25 Score=25.64 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.0
Q ss_pred CeEEEEEEcC-CCCccceEEEEE-CCEEEEEee
Q 028577 117 DALNLSIDMP-GLGKEDVRVSLE-QNTLVIRGE 147 (207)
Q Consensus 117 d~y~l~vdLP-G~~kedI~V~v~-~~~L~I~g~ 147 (207)
..|.=++.|| +++.++|+=.+. +|.|+|++-
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 4677788999 899999999998 899999873
No 65
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=55.08 E-value=43 Score=23.72 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=28.1
Q ss_pred eEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 159 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 159 ~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
..|.-.+.||. + +++.|+.+++||.|+|..-+.
T Consensus 7 d~y~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVCH-F-TPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 36788889986 5 799999999999999998764
No 66
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=53.67 E-value=52 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=33.4
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|++|+|+++++.++|+|.. ++.++ .||..- ..+....+||-|.|.-+
T Consensus 13 P~~V~V~i~~~~v~VkGp~----------G~L~~--~~~~~~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKY----------GELTR--SFRHLP---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCC----------ceEEE--EecCCC---ceEEEEeCCCEEEEEeC
Confidence 7899999999999999975 34444 344321 35667778898777744
No 67
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=53.66 E-value=52 Score=23.37 Aligned_cols=32 Identities=6% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
.|.-.+.||. + +++.|+-+..+|.|+|+--+.
T Consensus 11 ~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVKH-F-SPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6777788986 6 899999999999999998654
No 68
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=52.18 E-value=51 Score=26.03 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.2
Q ss_pred EECCCCCCCCCceEEEEeCCEEEEEEeCcC
Q 028577 165 IDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 165 i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~ 194 (207)
+.|| ++ +.+.|+-.+++|.|+|..-+..
T Consensus 49 adlP-Gv-~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 49 LALA-GF-RQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEeC-CC-CHHHeEEEEECCEEEEEEEEcc
Confidence 4477 47 8999999999999999987644
No 69
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=51.96 E-value=81 Score=25.91 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=31.8
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|+.|+|+++++.++|+|.. ++.++. ||. ..++...+||-|.|...
T Consensus 13 P~~V~v~i~~~~v~VkGp~----------G~L~~~--~~~-----~~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPK----------GELTRD--FWY-----PGVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCC----------eEEEEE--ecC-----CcEEEEEECCEEEEEEC
Confidence 6899999999999999975 334433 332 13456678898877754
No 70
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=51.40 E-value=30 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=26.3
Q ss_pred eEEEEEEcC-CCCccceEEEEE-CCEEEEEee
Q 028577 118 ALNLSIDMP-GLGKEDVRVSLE-QNTLVIRGE 147 (207)
Q Consensus 118 ~y~l~vdLP-G~~kedI~V~v~-~~~L~I~g~ 147 (207)
+|.=.+.|| +++.+.|+-++. +|.|+|+.-
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 377789999 799999999995 999999874
No 71
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=50.72 E-value=41 Score=23.85 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=28.0
Q ss_pred EEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
.|.-.+.||. + +++.|+-+..+|.|+|..-|.
T Consensus 9 ~~~v~~dlpG-~-~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 9 TYQFAVDVSD-F-SPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEe
Confidence 6888889985 6 899999999999999998664
No 72
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=50.61 E-value=42 Score=23.87 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCcCcc
Q 028577 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 196 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~~~ 196 (207)
.|.-.+.||. + +.+.|+-.+++|.|+|...+....
T Consensus 12 ~~~v~~~lPG-~-~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVAG-F-SEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEcccc
Confidence 6777788996 6 899999999999999998765543
No 73
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=49.82 E-value=15 Score=24.81 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=12.0
Q ss_pred CceEEEEeCCEEEEEEe
Q 028577 175 DQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 175 ~~ikA~~~nGvL~I~lP 191 (207)
..|+|.|+||||+--=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46899999999986533
No 74
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=49.34 E-value=50 Score=21.94 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEeeecc
Q 028577 116 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGK 150 (207)
Q Consensus 116 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~ 150 (207)
+..|.+.++|++ +.+++...++.++.|.|.-.+..
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~ 75 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKE 75 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECC
Confidence 478999999997 58889999999999999976543
No 75
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=49.11 E-value=1.1e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=31.4
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|++|+|+++++.++|+|.. ++.++.+. |. .++...++|-|.|..+
T Consensus 7 P~~V~v~i~~~~i~vkGp~----------G~L~~~~~-~~------~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPK----------GEVTRELW-YP------GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCC----------eEEEEEEe-CC------cEEEEEeCCEEEEEeC
Confidence 6889999999999999975 33443332 33 3445678888888754
No 76
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=48.95 E-value=83 Score=25.59 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=31.6
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|++|+|+++++.|+|+|.. +..++.+ |..+ +...+++.|.|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~----------G~l~~~l--~~~i------~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPK----------GELSRTL--HPGV------TVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCC----------eEEEEEc--CCCe------EEEEECCEEEEEec
Confidence 6899999999999999974 3444444 5444 45668888777754
No 77
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=48.47 E-value=43 Score=26.08 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=27.5
Q ss_pred CeEEEEEEcC-CCCccceEEEEECCEEEEEeeeccc
Q 028577 117 DALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKE 151 (207)
Q Consensus 117 d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~ 151 (207)
..|.-.+.|| +++++.++-++.+|.|+|.-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 4677778888 4677789999999999998876543
No 78
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=47.89 E-value=75 Score=26.30 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=32.6
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|+.|+|+++++.|+|+|... +.+ ..||..- =.+....++|.|.|.-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG----------~Ls--~~~~~~~---~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG----------TLT--KDLRHLQ---LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc----------EEE--EEcCCCC---cEEEEEecCCEEEEEeC
Confidence 68999999999999999753 333 3444421 14566778888888744
No 79
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=47.36 E-value=45 Score=21.44 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=27.8
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEee
Q 028577 116 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGE 147 (207)
Q Consensus 116 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~ 147 (207)
...|...+.||+ +.++.++..+.++.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 478999999996 58889999999999999753
No 80
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=47.03 E-value=85 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=31.4
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|++|+|+++++.|+|+|.. +..++.| |..+ +...+++.|.|...
T Consensus 12 P~~V~v~~~~~~v~vkGp~----------G~l~~~~--~~~v------~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPK----------GELSRTL--NPDV------TVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCC----------EEEEEEc--CCCe------EEEEECCEEEEEcC
Confidence 6899999999999999975 3444444 4434 34568887777644
No 81
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.58 E-value=1.3e+02 Score=27.92 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=50.1
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEEC-CEEEEEeeecccccc-----ceeeeEEEEEEECCCCCCCCCceEEE
Q 028577 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEG-----EESVRRYTSRIDLPEKLYRTDQIKAE 180 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~-~~L~I~g~~~~~~~~-----e~~~~~f~r~i~LP~~v~d~~~ikA~ 180 (207)
.-+++++.+.+.|.| +|+ ++.|.|.+.| +.+.+..+..+..+- +...|.++-.+.. +++ ++.+.+.
T Consensus 51 dvpvdvlYD~~~y~i----sg~-~etV~Vtl~G~ns~~~~~~~~~dFkV~ADLt~a~~Gt~evkl~v-e~l--~~~ltvs 122 (403)
T COG4856 51 DVPVDVLYDSDKYFI----SGQ-PETVTVTLKGPNSIVLKSEKPEDFKVVADLTHAGVGTHEVKLQV-EGL--PDGLTVS 122 (403)
T ss_pred eceeEEEEccccccc----cCC-ceEEEEEEeCCcceeeeeecCcCeEEEEEhhhcCCCceEeeeEe-ecC--CCCceEE
Confidence 346789998888864 565 5789999998 888888776544221 1123344433332 233 5666677
Q ss_pred EeCCEEEEEEeCcC
Q 028577 181 MKNGVLKVTVPKVK 194 (207)
Q Consensus 181 ~~nGvL~I~lPK~~ 194 (207)
..=-.-.|++-|+.
T Consensus 123 V~P~~~~Vti~kk~ 136 (403)
T COG4856 123 VNPEKATVTIEKKV 136 (403)
T ss_pred EccceeEEEEeeee
Confidence 77777777777653
No 82
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=43.04 E-value=50 Score=26.96 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.4
Q ss_pred EEEEEEcC-CCCccceEEEEE-CCEEEEEeeeccc
Q 028577 119 LNLSIDMP-GLGKEDVRVSLE-QNTLVIRGEGGKE 151 (207)
Q Consensus 119 y~l~vdLP-G~~kedI~V~v~-~~~L~I~g~~~~~ 151 (207)
|.=+.-|| |++++.|.=.+. +|.|+|+|.....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 34456788 999999999996 5899999976553
No 83
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=41.95 E-value=88 Score=20.79 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=29.7
Q ss_pred eeeEE-EcCCeEEEEEEcCCCCccceEEEEE-CCEEEEEeee
Q 028577 109 GWDAK-ETDDALNLSIDMPGLGKEDVRVSLE-QNTLVIRGEG 148 (207)
Q Consensus 109 ~~di~-e~~d~y~l~vdLPG~~kedI~V~v~-~~~L~I~g~~ 148 (207)
++.+. -..+.|.|++..||+..-.-.|.+. +....|+.+.
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 34555 4468999999999998888888887 4566666653
No 84
>PRK10568 periplasmic protein; Provisional
Probab=38.89 E-value=2e+02 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=19.5
Q ss_pred CCCCccceEEEEECCEEEEEeeecc
Q 028577 126 PGLGKEDVRVSLEQNTLVIRGEGGK 150 (207)
Q Consensus 126 PG~~kedI~V~v~~~~L~I~g~~~~ 150 (207)
|+++..+|+|.+.+|.+++.|....
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCC
Confidence 4555668899999999999998764
No 85
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=38.79 E-value=1.3e+02 Score=24.62 Aligned_cols=44 Identities=20% Similarity=0.483 Sum_probs=30.8
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
|+.|+|+++++.|+|+|... +.+ ..||..+ +...+++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G----------~l~--~~~~~~v------~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG----------TLS--RKIPDLI------TIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE----------EEE--EECCCCe------EEEEeCCEEEEEcC
Confidence 68899999999999999753 233 3455443 44668887777644
No 86
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=38.08 E-value=1.5e+02 Score=21.13 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.0
Q ss_pred CceEEEEeCCEEEEEEeC
Q 028577 175 DQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 175 ~~ikA~~~nGvL~I~lPK 192 (207)
=.+++..+||-.++++-.
T Consensus 68 y~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 68 YTLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEEECCEEEEEEEE
Confidence 367788899988888754
No 87
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=36.39 E-value=1.1e+02 Score=21.75 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCcC
Q 028577 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~ 194 (207)
.|.-.+.||. + +++.|+-.+.++.|+|+--+..
T Consensus 11 ~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVNH-F-APEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECCC-C-CHHHEEEEEECCEEEEEEEECc
Confidence 6777888986 6 8999999999999999987643
No 88
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=35.94 E-value=1.8e+02 Score=22.01 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=25.9
Q ss_pred eEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 159 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 159 ~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
..|+.-|....++-+...|+-.+++.++-...|+.
T Consensus 44 ~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~ 78 (113)
T cd01759 44 NTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV 78 (113)
T ss_pred CEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE
Confidence 46788888888876667788888888776655654
No 89
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=34.10 E-value=1.5e+02 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=30.2
Q ss_pred cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccc
Q 028577 115 TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEG 152 (207)
Q Consensus 115 ~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~ 152 (207)
.++.|+=++.||--..+-.++++.++.|.|..++..+.
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCC
Confidence 34456668899966788889999999999999876554
No 90
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=32.70 E-value=1e+02 Score=25.42 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=30.9
Q ss_pred cceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeC
Q 028577 131 EDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 131 edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK 192 (207)
..+.+..+.+.+.|+|..+. |...=.+.... +.=.++-+|++|.|++.==+
T Consensus 131 ~~i~v~~~~~~V~V~Gtlkt----------~vg~~~~~~~~-k~Y~l~~~y~~G~l~L~~f~ 181 (188)
T PRK13726 131 TSVRVWPQYGRVDIRGVLKT----------WIGDSKPFTEI-KHYILILKRENGVTWLDNFG 181 (188)
T ss_pred eeEEEccCCCEEEEEEEEEE----------EECCcccCchh-eEEEEEEEEcCCEEEEEEEE
Confidence 56666666788888887542 11111122222 45578888999999986433
No 91
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=31.48 E-value=34 Score=23.15 Aligned_cols=22 Identities=32% Similarity=0.746 Sum_probs=18.7
Q ss_pred CCCccceEEEEECCEEEEEeee
Q 028577 127 GLGKEDVRVSLEQNTLVIRGEG 148 (207)
Q Consensus 127 G~~kedI~V~v~~~~L~I~g~~ 148 (207)
-++.+.|.|....+.|.|+|+.
T Consensus 22 ~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 22 SFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEETTEEEEEETTEEEEEEEEE
T ss_pred EECCCEEEEEeCCEEEEEECce
Confidence 3578899999999999999974
No 92
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=31.22 E-value=1.1e+02 Score=20.93 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=24.7
Q ss_pred EEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 161 YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 161 f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
..=.|.+|..+ ..+.++..+.+.-|.|.++
T Consensus 10 V~i~i~~~~~~-~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGT-KSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCC-cceeEEEEEEcCEEEEEEC
Confidence 34457789888 8899999999999999886
No 93
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=28.52 E-value=62 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=21.8
Q ss_pred CCCCccceEEEEECCEEEEEeeeccc
Q 028577 126 PGLGKEDVRVSLEQNTLVIRGEGGKE 151 (207)
Q Consensus 126 PG~~kedI~V~v~~~~L~I~g~~~~~ 151 (207)
.|+...+|+|.+++|.++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCH
Confidence 47778889999999999999987644
No 94
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=27.91 E-value=89 Score=20.80 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.5
Q ss_pred cCCCC-ccceEEEEECCEEEEE
Q 028577 125 MPGLG-KEDVRVSLEQNTLVIR 145 (207)
Q Consensus 125 LPG~~-kedI~V~v~~~~L~I~ 145 (207)
-.||. -+.|+|++.++.|+|+
T Consensus 35 ~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 35 EAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HhCCCCCCEEEEEEECCEEEEe
Confidence 45775 4689999999999886
No 95
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=27.34 E-value=29 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=18.5
Q ss_pred CCCCCCCCCceEEEEeCCEEEEEEeC
Q 028577 167 LPEKLYRTDQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 167 LP~~v~d~~~ikA~~~nGvL~I~lPK 192 (207)
|-+.+ ..+.-.+.|.||||+|.|+-
T Consensus 65 l~e~~-~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEV-PGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhc-CccccccccccceEEEEecC
Confidence 33445 34666789999999999984
No 96
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=27.06 E-value=48 Score=23.83 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.2
Q ss_pred cCCCCccceEEEEECCEEEEEeee
Q 028577 125 MPGLGKEDVRVSLEQNTLVIRGEG 148 (207)
Q Consensus 125 LPG~~kedI~V~v~~~~L~I~g~~ 148 (207)
+=-|+.+.|.|....+.|.|+|+.
T Consensus 38 I~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 38 LVVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred eEEECCCEEEEEcCceEEEEEccc
Confidence 334688999999999999999974
No 97
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=26.85 E-value=49 Score=23.89 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=17.9
Q ss_pred CCCccceEEEEECCEEEEEeee
Q 028577 127 GLGKEDVRVSLEQNTLVIRGEG 148 (207)
Q Consensus 127 G~~kedI~V~v~~~~L~I~g~~ 148 (207)
-|+.+.|.|....+.|+|+|+.
T Consensus 21 sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcEEEEEEcce
Confidence 3577888888889999999873
No 98
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.82 E-value=30 Score=32.31 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=55.6
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEE--eCC
Q 028577 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM--KNG 184 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~--~nG 184 (207)
.|.+.+..+++...|++..|-.+...+.+..-++....++. .|--+..+|..+.+...-.|+| ++|
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~------------pyflrl~~p~~~~~d~~~n~s~d~kd~ 70 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG------------PYFLRLAGPGMVEDDARPNASYDAKDG 70 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc------------hhHHhhcCcchhhhhccccCccccccc
Confidence 57788999999999999999777777777666666666553 4445566676664444445555 889
Q ss_pred EEEEEEeCcCc
Q 028577 185 VLKVTVPKVKE 195 (207)
Q Consensus 185 vL~I~lPK~~~ 195 (207)
-..|.+||..+
T Consensus 71 ~~~vK~~K~~~ 81 (466)
T KOG3247|consen 71 YAHVKVPKFHP 81 (466)
T ss_pred eeEEeecCCCc
Confidence 99999999644
No 99
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=25.74 E-value=1.8e+02 Score=23.09 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.2
Q ss_pred ECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 166 DLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 166 ~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
.=|..| .+........+|-++++||+.
T Consensus 150 ~~p~~V-~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENV-VPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSS-EEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEE-EEEEeeEEecCCEEEEEeCCC
Confidence 347777 666656666799999999974
No 100
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=25.51 E-value=84 Score=23.49 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.7
Q ss_pred CceEEEEeCCEEEEEEeC
Q 028577 175 DQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 175 ~~ikA~~~nGvL~I~lPK 192 (207)
..+.+++.+|||+|+++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 468899999999999964
No 101
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=25.38 E-value=71 Score=23.83 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.5
Q ss_pred CceEEEEeCCEEEEEEeC
Q 028577 175 DQIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 175 ~~ikA~~~nGvL~I~lPK 192 (207)
..+.+++.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 567888999999999983
No 102
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=1.3e+02 Score=24.91 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEe
Q 028577 128 LGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 128 ~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lP 191 (207)
.-|++|+|+++++.++++|.+. +-++.| +.. . ++-+.+|+++.+..-
T Consensus 10 ~~P~gV~V~i~~~~v~vkGpkG----------eL~~~~--~~~----~-v~v~~~~~~~vv~~~ 56 (178)
T COG0097 10 VIPAGVTVSIEGQVVTVKGPKG----------ELTREF--HDN----V-VKVEVEDNILVVRPV 56 (178)
T ss_pred ecCCCeEEEEeccEEEEECCCc----------EEEEEe--cCc----c-eEEEecCCEEEEeec
Confidence 3489999999999999999642 333333 322 1 567777887766543
No 103
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=25.00 E-value=1.5e+02 Score=21.51 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=24.7
Q ss_pred EEEEEECCCCCCCCCceEEEEeCCEEEEEE
Q 028577 161 YTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 190 (207)
Q Consensus 161 f~r~i~LP~~v~d~~~ikA~~~nGvL~I~l 190 (207)
-.-+|+||.++ ....++..++..-|+|.+
T Consensus 17 V~v~i~lp~~~-~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGT-RAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCC-ceeeEEEEEEcCEEEEEE
Confidence 34457899999 899999999999999987
No 104
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=23.75 E-value=1.2e+02 Score=23.66 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=16.9
Q ss_pred EECCCCCCCCCceEEEEeCCEEEEEEeCc
Q 028577 165 IDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 165 i~LP~~v~d~~~ikA~~~nGvL~I~lPK~ 193 (207)
+.-|+++ .+.++.+.+||.|.|...+.
T Consensus 25 v~~~~~l--~~~i~~~v~~g~L~I~~~~~ 51 (181)
T PF10988_consen 25 VEADENL--LDRIKVEVKDGTLKISYKKN 51 (181)
T ss_dssp EEEEHHH--HCCEEEEEETTEEEEEE-SC
T ss_pred EEEChhh--cceEEEEEECCEEEEEECCC
Confidence 4444544 46777777788888877744
No 105
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=23.70 E-value=71 Score=23.89 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.1
Q ss_pred ceEEEEeCCEEEEEEeCc
Q 028577 176 QIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 176 ~ikA~~~nGvL~I~lPK~ 193 (207)
.+.+++.+|||+|+++..
T Consensus 28 d~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 28 DIDCERNGGVLTLTFENG 45 (105)
T ss_pred CeeeeccCCEEEEEECCC
Confidence 377889999999999853
No 106
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=23.06 E-value=2.4e+02 Score=19.97 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=33.8
Q ss_pred EEEEEcCCCCccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEE-eCCEEEEEEeC
Q 028577 120 NLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTVPK 192 (207)
Q Consensus 120 ~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~-~nGvL~I~lPK 192 (207)
.|.+.+| +|-+|.++++...-+|.. |.|... .|+.+..-.=.++|++ .|| =+++..|
T Consensus 4 ~itv~vP----adAkl~v~G~~t~~~G~~----------R~F~T~-~L~~G~~y~Y~v~a~~~~dG-~~~t~~~ 61 (75)
T TIGR03000 4 TITVTLP----ADAKLKVDGKETNGTGTV----------RTFTTP-PLEAGKEYEYTVTAEYDRDG-RILTRTR 61 (75)
T ss_pred EEEEEeC----CCCEEEECCeEcccCccE----------EEEECC-CCCCCCEEEEEEEEEEecCC-cEEEEEE
Confidence 5778888 888999988888777753 233221 2333221124667777 566 4444444
No 107
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=23.00 E-value=71 Score=23.75 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.7
Q ss_pred ceEEEEeCCEEEEEEeC
Q 028577 176 QIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 176 ~ikA~~~nGvL~I~lPK 192 (207)
.+.+++.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888899999999984
No 108
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=22.66 E-value=2e+02 Score=20.76 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=27.6
Q ss_pred EEEcCCeEEEEEEc-CCCCccceEEEEEC--CEEEEEeeec
Q 028577 112 AKETDDALNLSIDM-PGLGKEDVRVSLEQ--NTLVIRGEGG 149 (207)
Q Consensus 112 i~e~~d~y~l~vdL-PG~~kedI~V~v~~--~~L~I~g~~~ 149 (207)
|.++++.+.|.+.+ ||.+++.| +.+++ +.|.|+-.-.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~Ap 40 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAP 40 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecC
Confidence 35678888888877 89988888 44667 7788877644
No 109
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=22.36 E-value=1.5e+02 Score=23.95 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=26.3
Q ss_pred ccceEEEEECCEEEEEeeeccccccceeeeEEEEEEECCCCCCCCCceEEEEeCCEEEEE
Q 028577 130 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVT 189 (207)
Q Consensus 130 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~ 189 (207)
++++.+..+++.+.|+|....-.. .=.+...- ..=.+.-.|+||.|.|.
T Consensus 130 ~~~i~~d~~~~~V~V~G~l~t~~g----------~~~~~~~~-~~y~~~~~~~~g~~~L~ 178 (187)
T PF05309_consen 130 PKSIEVDPETLTVFVTGTLKTWIG----------DKKVSSED-KTYRLQFKYRNGRLWLK 178 (187)
T ss_pred EeEEEEecCCCEEEEEEEEEEEEC----------Ccccccee-EEEEEEEEEeCCEEEEe
Confidence 456666667777888886432111 00011111 22345667788888875
No 110
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=21.60 E-value=88 Score=24.54 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCCccceEEEEECCEEEEEee
Q 028577 117 DALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 147 (207)
Q Consensus 117 d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~ 147 (207)
+.+.|+++.|.---+.|++.+++++|.|.-+
T Consensus 19 ~~~~v~v~~~~~l~~~i~~~v~~g~L~I~~~ 49 (181)
T PF10988_consen 19 DSPSVEVEADENLLDRIKVEVKDGTLKISYK 49 (181)
T ss_dssp SS-EEEEEEEHHHHCCEEEEEETTEEEEEE-
T ss_pred CCcEEEEEEChhhcceEEEEEECCEEEEEEC
Confidence 5556777666544577888888888888766
Done!