RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028577
         (207 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 71.6 bits (175), Expect = 5e-17
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPE 169
               E D  + +   +PG+ KED+ ++   +TL IR +        ES R   S I   E
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMI-TESERIIYSEIPEEE 71

Query: 170 KLYRT---------DQIKAEMKNGVLKVTVPKVKEEER 198
           ++YRT         +   A+ +NGVL V +PK +   +
Sbjct: 72  EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK 109


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 71.3 bits (174), Expect = 2e-16
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 21/149 (14%)

Query: 61  SFPRRRDDF--FSDVF-DPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDD 117
           S  RR + F  F+D++ DPF   RS+   +        S   S T        D KET +
Sbjct: 1   SIVRRSNVFDPFADLWADPFDTFRSIVPAI--------SGGGSETAAFANARMDWKETPE 52

Query: 118 ALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEGEE--------SVRRYTSRIDLP 168
           A     D+PG+ KE+V+V +E  N LV+ GE  KE E +         S  ++  R  L 
Sbjct: 53  AHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLL 112

Query: 169 EKLYRTDQIKAEMKNGVLKVTVPKVKEEE 197
           E   + +++KA ++NGVL VTVPK + ++
Sbjct: 113 ED-AKVEEVKAGLENGVLTVTVPKAEVKK 140


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 30.7 bits (69), Expect = 0.029
 Identities = 11/91 (12%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRI 165
           ++  W   +T+  + +++ +  + K DV V   +  L    +             Y  ++
Sbjct: 3   IKYDWY--QTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSG-------EDYNLKL 53

Query: 166 DLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 196
           +L   +   +Q   ++ +  +++ + K +  
Sbjct: 54  ELLHPI-IPEQSTFKVLSTKIEIKLKKPEAV 83


>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
           [TaxId: 3562]}
          Length = 359

 Score = 25.7 bits (55), Expect = 4.8
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 3/72 (4%)

Query: 59  ARSFPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDA 118
           A           +          +    L  + +  +        GG+RRG D  +   A
Sbjct: 241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFK---A 297

Query: 119 LNLSIDMPGLGK 130
           L L      +G+
Sbjct: 298 LALGAAGVFIGR 309


>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503
           {Ralstonia eutropha [TaxId: 106590]}
          Length = 108

 Score = 24.3 bits (52), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 121 LSIDMPGLGKEDVRVSLEQNT 141
           +S D+PGL K +VR+  EQ T
Sbjct: 29  MSHDVPGLHKYEVRLVAEQPT 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 744,934
Number of extensions: 33580
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 5
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)