BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028579
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAK
QKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLL
WIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVL
FAGVSLPLAVSTIVSSNLLIQSILHQP

High Scoring Gene Products

Symbol, full name Information P value
Z-ISO
15-cis-zeta-carotene isomerase 		protein from Arabidopsis thaliana 1.3e-34

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028579
        (207 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2196475 - symbol:Z-ISO "15-cis-zeta-carotene i...   375  1.3e-34   1


>TAIR|locus:2196475 [details] [associations]
            symbol:Z-ISO "15-cis-zeta-carotene isomerase"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016120 "carotene biosynthetic process"
            evidence=IMP] [GO:0090471 "9,15,9'-tri-cis-zeta-carotene isomerase
            activity" evidence=IDA] GO:GO:0016021 EMBL:CP002684 GO:GO:0009507
            GO:GO:0031969 EMBL:AC007354 GO:GO:0016120 InterPro:IPR009915
            Pfam:PF07298 EMBL:AK221585 EMBL:AF348578 EMBL:AY086168
            EMBL:BX816671 IPI:IPI00546410 PIR:A86242 RefSeq:NP_001117264.1
            RefSeq:NP_563879.1 UniGene:At.17014 UniGene:At.71863
            ProteinModelPortal:Q9SAC0 STRING:Q9SAC0 PRIDE:Q9SAC0
            EnsemblPlants:AT1G10830.1 GeneID:837626 KEGG:ath:AT1G10830
            TAIR:At1g10830 eggNOG:COG4094 HOGENOM:HOG000232467
            InParanoid:Q9SAC0 KO:K15744 OMA:DGRQKLP PhylomeDB:Q9SAC0
            ProtClustDB:CLSN2687762 Genevestigator:Q9SAC0 GO:GO:0090471
            Uniprot:Q9SAC0
        Length = 367

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 83/146 (56%), Positives = 100/146 (68%)

Query:    51 TLFFNSNPAKQKIVLVRS--RTEXXXXXXXXXXXXXXXXEDSAAFDLKNQKLTSWVYFSX 108
             +L  +S+P  +KI LVRS  R +                EDSAAF+L  QKL SWVYF  
Sbjct:    43 SLLSSSSPVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGV 101

Query:   109 XXXXXXXXXXXXWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMG 168
                         WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+G
Sbjct:   102 VLGVVLFILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIG 161

Query:   169 EKVIGARAYRVLFAGVSLPLAVSTIV 194
             EK+IG RA+RVLFAG+SLPLA+STIV
Sbjct:   162 EKLIGERAFRVLFAGISLPLAMSTIV 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       167   0.00075  108 3  11 22  0.36    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  130 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.70u 0.23s 11.93t   Elapsed:  00:00:01
  Total cpu time:  11.70u 0.23s 11.93t   Elapsed:  00:00:01
  Start:  Sat May 11 02:31:00 2013   End:  Sat May 11 02:31:01 2013

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