BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028579
         (207 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SAC0|ZCIS_ARATH 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis
           thaliana GN=Z-ISO PE=1 SV=1
          Length = 367

 Score =  180 bits (456), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 114/139 (82%), Gaps = 3/139 (2%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIV 194
           A+RVLFAG+SLPLA+STIV
Sbjct: 169 AFRVLFAGISLPLAMSTIV 187


>sp|B4FHU1|ZCIS_MAIZE 15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1
          Length = 366

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 105/151 (69%), Gaps = 1/151 (0%)

Query: 44  PAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSW 103
           P PP    L  ++ PA+     +  +    +  D       L GEDSAAF+LK+Q + SW
Sbjct: 37  PLPPLSRVLS-HARPARAVGGGIEPKEGVVAEGDESGGGPVLVGEDSAAFELKDQSVASW 95

Query: 104 VYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163
            YF+ ILG VL  L +LWID STG G  F+D+V+S+SDSHEVVML+L +IFA VHSG+AS
Sbjct: 96  AYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMAS 155

Query: 164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIV 194
           LR+ GEK++G R YRVLFAG+SLPLAV+TIV
Sbjct: 156 LRESGEKIVGERVYRVLFAGISLPLAVTTIV 186


>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis
           thaliana GN=At3g25260 PE=2 SV=1
          Length = 515

 Score = 34.7 bits (78), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 96  KNQKLTS----WVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDS 142
           +NQ+L S    W +FSV LG  L +  ++WI+ + G+  +F  S + L+ +
Sbjct: 164 RNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASA 214


>sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis
           thaliana GN=At3g25280 PE=1 SV=1
          Length = 521

 Score = 32.7 bits (73), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 83  ATLAGEDSAAFDLKNQKLTS----WVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSS 138
           A+L        D +N +L S    W+YFS+  G +L +  +LWI+   G+  +F  SV  
Sbjct: 151 ASLPSHGGDQIDRRNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGI 210

Query: 139 LSDS 142
           L+ +
Sbjct: 211 LATA 214


>sp|Q6CBS9|ATG27_YARLI Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB
           122 / E 150) GN=ATG27 PE=3 SV=1
          Length = 276

 Score = 32.3 bits (72), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 102 SWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGL 161
           +W++  ++LGV ++++   WI N   YG A +D +       +V  L+  LI   V +  
Sbjct: 208 TWLFIIIVLGVAVYIIGNAWI-NYDRYGNAGVDLLPHADSLRDVPYLIRDLIAKVVGTFT 266

Query: 162 ASLR 165
            S R
Sbjct: 267 GSSR 270


>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1
          Length = 570

 Score = 31.6 bits (70), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 88  EDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAF 132
           E+     +K     +W YFS+ +G ++    L+WI  + G+G  F
Sbjct: 170 ENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGF 214


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,245,473
Number of Sequences: 539616
Number of extensions: 2473086
Number of successful extensions: 7657
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7642
Number of HSP's gapped (non-prelim): 26
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)