Query 028579
Match_columns 207
No_of_seqs 67 out of 69
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 23:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 70.6 9.2 0.00031 33.8 6.5 69 96-176 8-85 (422)
2 3hfe_A Potassium voltage-gated 59.1 2.8 9.7E-05 26.6 0.7 13 167-179 3-15 (31)
3 1kqf_C FDH-N gamma, formate de 38.8 20 0.00067 27.5 2.7 62 97-163 112-174 (217)
4 2wdq_D Succinate dehydrogenase 34.2 1.3E+02 0.0045 21.7 6.7 69 129-201 42-110 (115)
5 4efh_B Protein spire; cytoskel 33.5 7 0.00024 28.1 -0.5 37 13-52 2-41 (66)
6 4hb7_A Dihydropteroate synthas 24.5 32 0.0011 29.5 1.9 24 118-141 165-188 (270)
7 1eye_A DHPS 1, dihydropteroate 21.0 38 0.0013 28.5 1.6 19 119-137 173-191 (280)
8 4gd3_A NI/Fe-hydrogenase 1 B-t 20.9 1.3E+02 0.0045 23.4 4.7 64 98-164 129-204 (235)
9 2dqw_A Dihydropteroate synthas 17.6 50 0.0017 28.2 1.6 17 119-135 193-209 (294)
10 1aj0_A DHPS, dihydropteroate s 17.3 51 0.0017 27.7 1.6 20 119-138 181-200 (282)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=70.64 E-value=9.2 Score=33.80 Aligned_cols=69 Identities=22% Similarity=0.392 Sum_probs=45.6
Q ss_pred CcccchhHHHHHHHHHHHHHHhhh---------eeeeCCCCchhhHHHHHhccCCChHHHHHHHHHHHHHHhcccccccc
Q 028579 96 KNQKLTSWVYFSVILGVVLFLLQL---------LWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRD 166 (207)
Q Consensus 96 ~~Qk~~SW~yF~~iLgvVL~~L~v---------~WIdpsTG~G~~Fidavssls~Sh~~VML~LlliFAi~HSGlAsLR~ 166 (207)
.+.++.-|+..+.++|+++..+.- -|+.| +|+-|++.+ -|+..-++|.-+=+|.++++.
T Consensus 8 ~~~~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~---~G~lFi~ll---------kmiv~PLVf~siv~gia~l~~ 75 (422)
T 2nwl_A 8 IEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKP---FGDLFVRLL---------KMLVMPIVFASLVVGAASISP 75 (422)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHH---HHHHHHHHH---------HHHHHHHHHHHHHHHTTSCTT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH---HHHHHHHHH---------HHHHHHHHHHHHHHHHHhcch
Confidence 345677889999999999887653 23333 466666654 467777777777789999983
Q ss_pred hhhhhhhhhh
Q 028579 167 MGEKVIGARA 176 (207)
Q Consensus 167 ~gEk~IGaRa 176 (207)
+.-.++|-|.
T Consensus 76 ~~~gri~~~t 85 (422)
T 2nwl_A 76 ARLGRVGVKI 85 (422)
T ss_dssp TTHHHHHHHH
T ss_pred hhhhhHHHHH
Confidence 3333555554
No 2
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=59.09 E-value=2.8 Score=26.64 Aligned_cols=13 Identities=54% Similarity=0.746 Sum_probs=9.4
Q ss_pred hhhhhhhhhhhHH
Q 028579 167 MGEKVIGARAYRV 179 (207)
Q Consensus 167 ~gEk~IGaRayRV 179 (207)
.|-.-||+|+|||
T Consensus 3 ~g~nTIGaRLnRv 15 (31)
T 3hfe_A 3 RGSNTIGARLNRV 15 (31)
T ss_dssp --CCSHHHHHHHH
T ss_pred cCcchHHHHHHHH
Confidence 3455699999998
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=38.81 E-value=20 Score=27.48 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHHHHHHhhheeeeCCCCchhhH-HHHHhccCCChHHHHHHHHHHHHHHhccccc
Q 028579 97 NQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAF-IDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163 (207)
Q Consensus 97 ~Qk~~SW~yF~~iLgvVL~~L~v~WIdpsTG~G~~F-idavssls~Sh~~VML~LlliFAi~HSGlAs 163 (207)
-||+.-|+.+..++..++..+.. |-. ++|..| .+.......=|++.+ .++++|.++|-.+|-
T Consensus 112 ~~~~~~~~l~~l~~~~~~TG~~~-~~~---~~~~~~~~~~~~~~~~iH~~~a-~~l~~~v~~Hv~~al 174 (217)
T 1kqf_C 112 GQKMMFWSIMSMIFVLLVTGVII-WRP---YFAQYFPMQVVRYSLLIHAAAG-IILIHAILIHMYMAF 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CTT---TTGGGSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH---hhhhhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56777788777777777776653 322 344222 111122233475555 556678889998874
No 4
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=34.22 E-value=1.3e+02 Score=21.70 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=42.9
Q ss_pred hhhHHHHHhccCCChHHHHHHHHHHHHHHhcccccccchhhhhhhhhhhHHHHhhcchhHHHHHHHHHHHHHH
Q 028579 129 GKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQ 201 (207)
Q Consensus 129 G~~Fidavssls~Sh~~VML~LlliFAi~HSGlAsLR~~gEk~IGaRayRVlFA~vSLPLAv~~IvYFi~~~~ 201 (207)
+.+|-+..+-. +++-.-.+.++++.++.|-+..-+|.--|..+-.+..|..+-.+- .+.+++|.+.-+|
T Consensus 42 ~~~y~~~~~~~-~~p~~~i~~~l~l~~~~~H~~~Gir~ii~Dyv~~~~~R~~l~~~~---~~~~~~~~~~g~~ 110 (115)
T 2wdq_D 42 ELTYEVWIGFF-ASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVI---VVALVVYVIYGFV 110 (115)
T ss_dssp SCCHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHH-HChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH---HHHHHHHHHHHHH
Confidence 44554444433 333244445555666777778899999999998888887765443 3445555555554
No 5
>4efh_B Protein spire; cytoskeleton, contractIle protein, contractIle protein-trans protein complex; HET: ADP; 2.48A {Drosophila melanogaster} PDB: 3ue5_B*
Probab=33.48 E-value=7 Score=28.06 Aligned_cols=37 Identities=24% Similarity=0.130 Sum_probs=22.2
Q ss_pred ccchhhhhhhhccccc---ccCcceeeeEeeeeccCCCCCcee
Q 028579 13 VPRIKKEAFANIRTKR---DASTSASVSISCKLKPAPPCPLTL 52 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lk~~~~c~~~~ 52 (207)
-||+||.|.+-|-... -.-.-+ -.-||||.++++.+|
T Consensus 2 pprvkk~AheiILefiRSrppL~~v---s~rklkp~~~~~~sL 41 (66)
T 4efh_B 2 PLGSKKDAHAMILEFIRSRPPLKKA---SDRQLGPPRMCEPSP 41 (66)
T ss_pred CCcccccHHHHHHHHHhcccchhhh---hhcccCCCCCCcCCH
Confidence 3899999877654331 111111 234788888887775
No 6
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=24.54 E-value=32 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=18.7
Q ss_pred hheeeeCCCCchhhHHHHHhccCC
Q 028579 118 QLLWIDNSTGYGKAFIDSVSSLSD 141 (207)
Q Consensus 118 ~v~WIdpsTG~G~~Fidavssls~ 141 (207)
.=+||||+-||||..-+.++=+..
T Consensus 165 ~~IilDPGiGFgKt~~~N~~ll~~ 188 (270)
T 4hb7_A 165 NKIWLDPGIGFAKTRNEEAEVMAR 188 (270)
T ss_dssp GGEEEECCTTSSCCHHHHHHHHTC
T ss_pred ceEEEeCCCCcccccccHHHHHhh
Confidence 358999999999988776665543
No 7
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=20.99 E-value=38 Score=28.48 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=14.8
Q ss_pred heeeeCCCCchhhHHHHHh
Q 028579 119 LLWIDNSTGYGKAFIDSVS 137 (207)
Q Consensus 119 v~WIdpsTG~G~~Fidavs 137 (207)
=+++||..||||..-+.++
T Consensus 173 ~IilDPg~Gf~k~~~~n~~ 191 (280)
T 1eye_A 173 RLVLDPGLGFAKTAQHNWA 191 (280)
T ss_dssp GEEEECCTTSSCCHHHHHH
T ss_pred hEEEECCCCcccCHHHHHH
Confidence 3899999999998744443
No 8
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=20.87 E-value=1.3e+02 Score=23.37 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=35.9
Q ss_pred ccchhHHHHHHHHHHHHHHhhheeeeCCCCch--------hhHHHHHhc----cCCChHHHHHHHHHHHHHHhcccccc
Q 028579 98 QKLTSWVYFSVILGVVLFLLQLLWIDNSTGYG--------KAFIDSVSS----LSDSHEVVMLVLILIFATVHSGLASL 164 (207)
Q Consensus 98 Qk~~SW~yF~~iLgvVL~~L~v~WIdpsTG~G--------~~Fidavss----ls~Sh~~VML~LlliFAi~HSGlAsL 164 (207)
|+..-|+.+..++..++..+.. |- +..|.| ..+...+.+ +..=|++.+ -++++|.++|-.+|-.
T Consensus 129 ~~~~~~~l~~ll~~~~ltG~~~-~~-~~~~~~~f~~~~~~~~~f~~~~~~~~~~~~iH~~~a-~~l~~~v~lHv~aal~ 204 (235)
T 4gd3_A 129 AQAAMFGYFLMSVFMIITGFAL-YS-EHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGM-WLIGAFVIGHVYMALR 204 (235)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHH-HT-TTTCCSSCGGGHHHHHHHHHHTSCTHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hc-ccccCCcccchhhHHHHHHhhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 6677788777777777777653 32 222332 122111111 222375555 5677888899877654
No 9
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=17.56 E-value=50 Score=28.20 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.9
Q ss_pred heeeeCCCCchhhHHHH
Q 028579 119 LLWIDNSTGYGKAFIDS 135 (207)
Q Consensus 119 v~WIdpsTG~G~~Fida 135 (207)
=+++||..||||..-+.
T Consensus 193 ~IilDPG~Gf~kt~~~n 209 (294)
T 2dqw_A 193 QVVLDPGFGFGKLLEHN 209 (294)
T ss_dssp CEEEECCTTSSCCHHHH
T ss_pred cEEEcCCCCcccCHHHH
Confidence 58999999999976443
No 10
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=17.27 E-value=51 Score=27.70 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.5
Q ss_pred heeeeCCCCchhhHHHHHhc
Q 028579 119 LLWIDNSTGYGKAFIDSVSS 138 (207)
Q Consensus 119 v~WIdpsTG~G~~Fidavss 138 (207)
=+++||..||||..-+.++-
T Consensus 181 ~IilDPg~gf~k~~~~n~~l 200 (282)
T 1aj0_A 181 KLLLDPGFGFGKNLSHNYSL 200 (282)
T ss_dssp GEEEECCTTSSCCHHHHHHH
T ss_pred hEEEeCCCCcccCHHHHHHH
Confidence 37999999999987654443
Done!