BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028580
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 102/194 (52%), Gaps = 36/194 (18%)
Query: 41 KTGGRISAKFDLKPPPYPLLG----------------------------------DGKSL 66
K G +++AKF+LKPPPYPL G DGKSL
Sbjct: 10 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSL 69
Query: 67 EDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 126
E++++ +YNKGD+LPAFNNAAQ WNHDFFW LIERDFGS
Sbjct: 70 EEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFL 129
Query: 127 XXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW-DY 185
TQFGSGWAWL YK P +++D L+V+K+PNAVNPLVW Y
Sbjct: 130 DEFKAAAATQFGSGWAWLAYKASKLDGENAANPP-SADEDNKLVVIKSPNAVNPLVWGGY 188
Query: 186 SPLLTIDVWEVNIY 199
PLLTIDVWE Y
Sbjct: 189 YPLLTIDVWEHAYY 202
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 64 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXX 123
KSLEDV+ +Y + FNNAAQ WNH FFW I FGS
Sbjct: 51 KSLEDVIRTTYGDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYD 110
Query: 124 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 183
TQFGSGWAWLV + +L V KT NA NPLV
Sbjct: 111 EFKAQFKNAAATQFGSGWAWLVLEA------------------GTLKVTKTANAENPLVH 152
Query: 184 DYSPLLTIDVWEVNIY 199
PLLTIDVWE Y
Sbjct: 153 GQVPLLTIDVWEHAYY 168
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 64 KSLEDVVIASYNKGDLLPA-FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSX 122
+SL D+V+ ++N G A FNNAAQ WNHDF+W +IE FGS
Sbjct: 72 ESLGDIVVKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSV 131
Query: 123 XXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 182
QFGSGW WLVY E K+L VV T NA +PL+
Sbjct: 132 EGFNNAFTTSGLGQFGSGWVWLVY----------------DEDAKALKVVSTANADSPLL 175
Query: 183 WDYS-PLLTIDVWEVNIYHCVLVIEK 207
PL T+DVWE Y L + K
Sbjct: 176 TQGQLPLATMDVWEHAYYLDYLNLRK 201
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GKSLE+++ +S +G + FNNAAQ WNH F+W I FGS
Sbjct: 48 EGKSLEEIIRSS--EGGV---FNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGS 102
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGW WLV D L +V T NA PL
Sbjct: 103 FADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPL 145
Query: 182 VWDYSPLLTIDVWEVNIY 199
D +PLLT+DVWE Y
Sbjct: 146 TTDATPLLTVDVWEHAYY 163
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GKSLE+++ +S +G + FNNAA+ WNH F+W I FGS
Sbjct: 48 EGKSLEEIIRSS--EGGV---FNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGS 102
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGW WLV D L +V T NA PL
Sbjct: 103 FADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPL 145
Query: 182 VWDYSPLLTIDVWEVNIY 199
D +PLLT+DVWE Y
Sbjct: 146 TTDATPLLTVDVWEHAYY 163
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GKSLE+++ +S +G + FNNAA WNH F+W I FGS
Sbjct: 48 EGKSLEEIIRSS--EGGV---FNNAAHVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGS 102
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGW WLV D L +V T NA PL
Sbjct: 103 FADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPL 145
Query: 182 VWDYSPLLTIDVWEVNIY 199
D +PLLT+DVWE Y
Sbjct: 146 TTDATPLLTVDVWEHAYY 163
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
DG++LE++V S N G FNNAAQ +NH F+W LIE FGS
Sbjct: 52 DGRNLEEIVKTS-NGG----IFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIET-FGS 105
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGWAWLV + L +V T NA PL
Sbjct: 106 VENFKEQFSKAAIATFGSGWAWLV-----------------KNTEGKLEIVTTSNAGCPL 148
Query: 182 VWDYSPLLTIDVWEVNIY 199
+ PLLT DVWE Y
Sbjct: 149 TENKKPLLTFDVWEHAYY 166
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GK+LE++V +S G + FNNAAQ WNH F+W I FGS
Sbjct: 49 EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGS 103
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGWAWLV + D SL + T A PL
Sbjct: 104 FDKFKEEFTKTSVGTFGSGWAWLV------------------KADGSLALCSTIGAGAPL 145
Query: 182 VWDYSPLLTIDVWEVNIY 199
+PLLT DVWE Y
Sbjct: 146 TSGDTPLLTCDVWEHAYY 163
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 83 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWA 142
FNNAAQ WNH F+W I++ FGS FGSGWA
Sbjct: 65 FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWA 124
Query: 143 WLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
WLV + + L V+ T NA NP+ PL+T DVWE Y
Sbjct: 125 WLV-----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYY 164
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GK+LE++V S G + FNNAAQ WNH F+W I FGS
Sbjct: 48 EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGS 102
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGW WLV K D SL + T A PL
Sbjct: 103 FDKFKEEFTKTSVGTFGSGWGWLVKK-----------------ADGSLALASTIGAGCPL 145
Query: 182 VWDYSPLLTIDVWEVNIY 199
+PLLT DVWE Y
Sbjct: 146 TIGDTPLLTCDVWEHAYY 163
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
DGKS+E++++A N + FN AAQ +NH F++ + + FGS
Sbjct: 88 DGKSIEEIILAVANDAEKKGLFNQAAQHFNHTFYFRCITPNGKAMPKSFESAVTAQ-FGS 146
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGW WL PS K++ L++ T NA PL
Sbjct: 147 VEQFKDAFVQAGVNNFGSGWTWLCVD--------------PSNKNQ-LVIDNTSNAGCPL 191
Query: 182 VWDYSPLLTIDVWEVNIY 199
P+L +DVWE Y
Sbjct: 192 TKGLRPVLAVDVWEHAYY 209
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GK+LE+++ S FNNAAQ WNH F+W I+ FGS
Sbjct: 49 EGKTLEEIIKTSTGG-----VFNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGS 103
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGS W WLV D SL +V T NA PL
Sbjct: 104 FEEFKAKFTDSAINNFGSSWTWLV-----------------KNADGSLAIVNTSNAATPL 146
Query: 182 VWD-YSPLLTIDVWEVNIY 199
+ +PLLT+D+WE Y
Sbjct: 147 TDEGVTPLLTVDLWEHAYY 165
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+GK++E++++A+ + FN AAQ +NH FFW I + FGS
Sbjct: 78 EGKTIEEIILATTGINESKVMFNQAAQHFNHSFFWKCLSPGGKPMPKTLENA-IAKQFGS 136
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGSGW WL + K LL+ T NA PL
Sbjct: 137 VDDFMVSFQQAGVNNFGSGWTWLCV----------------DPQTKELLIDSTSNAGCPL 180
Query: 182 VWDYSPLLTIDVWEVNIY 199
P+ T DVWE Y
Sbjct: 181 TSGLRPIFTADVWEHAYY 198
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 64 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXX 123
K+LE ++ K + FN AAQ +NH FF+ LI RDFGS
Sbjct: 82 KTLEQII-----KTETGKPFNQAAQVYNHTFFFNNLAPNGGGEPTGKIAELITRDFGSFE 136
Query: 124 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 183
FGSGW WL+ D L +V+ +A NP+
Sbjct: 137 KFKEDFSAAAVGHFGSGWVWLI------------------ADDGKLKIVQGHDAGNPIRE 178
Query: 184 DYSPLLTIDVWEVNIY 199
+PL+ IDVWE Y
Sbjct: 179 SKTPLMNIDVWEHAYY 194
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 83 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWA 142
FNNAAQ +NHDF+W L E+DFGS T FGSGW
Sbjct: 64 FNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWN 122
Query: 143 WLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
W Y L ++K + +++T NA P+ PLL +DVWE Y
Sbjct: 123 WAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYY 163
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 62 DGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
+ KSLE++V +S FNNAAQ WNH F+W I +GS
Sbjct: 48 ENKSLEEIVCSSDGG-----VFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGS 102
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
FGS W WLV D SL +V T NA PL
Sbjct: 103 FDAFKEALNDKAVNNFGSSWTWLV-----------------KLADGSLDIVNTSNAATPL 145
Query: 182 VWD-YSPLLTIDVWEVNIY 199
D +P+LT+D+WE Y
Sbjct: 146 TDDGVTPILTVDLWEHAYY 164
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 64 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXX 123
KSL D++ K FNNAAQ WNH F+W I+ DFGS
Sbjct: 59 KSLTDIL-----KESTGAIFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFN 113
Query: 124 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 183
FGSGW WL K+ L++++T +A NP+
Sbjct: 114 NFKDQFSNVLCGHFGSGWGWLALN-----------------KNNKLVILQTHDAGNPIKE 156
Query: 184 DYS-PLLTIDVWEVNIY 199
+ P+LT DVWE Y
Sbjct: 157 NTGIPILTCDVWEHAYY 173
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 83 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWA 142
FNNAAQ WNH F+W I+ DFGS FGSGW
Sbjct: 65 FNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWG 124
Query: 143 WLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEVNIY 199
WLV + L++++T +A NP+ + P+LT D+WE Y
Sbjct: 125 WLVLN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYY 165
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 68/179 (37%), Gaps = 30/179 (16%)
Query: 22 GGRSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIASYNKGDLLP 81
G ++ FH+ M G ++ K + P L KS+E+++ + + P
Sbjct: 19 GISKEQVTFHYDKHHM------GYVT-KLNAAANSNPALA-AKSVEEII-----RTEKGP 65
Query: 82 AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGW 141
FN AAQ +NH+F+W I FGS FGSGW
Sbjct: 66 IFNLAAQIFNHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAAVGHFGSGW 125
Query: 142 AWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV-WDYSPLLTIDVWEVNIY 199
AWLV K L V +T +A PL D P+LT DVWE Y
Sbjct: 126 AWLVQDTTT----------------KKLKVFQTHDAGCPLTEADLKPILTCDVWEHAYY 168
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 83 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWA 142
FNNA Q NH+ ++ I++ FGS T FGSGW
Sbjct: 65 FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWV 124
Query: 143 WLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
WL S+ + L + K PNA NP+ +PLLT DVWE Y
Sbjct: 125 WLA-----------------SDANGKLSIEKEPNAGNPVRKGLNPLLTFDVWEHAYY 164
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 64 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXX 123
KSL D+V S FNNAAQ WNH F+W I+ DFGS
Sbjct: 51 KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFN 105
Query: 124 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 183
FGSGW WL + L++++T +A NP+
Sbjct: 106 NFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKD 148
Query: 184 DYS-PLLTIDVWEVNIY 199
+ P+LT D+WE Y
Sbjct: 149 NTGIPILTCDIWEHAYY 165
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 64 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXX 123
KSL D+V S FNNAAQ WNH F+W I+ DFGS
Sbjct: 50 KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFN 104
Query: 124 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 183
FGSGW WL + L++++T +A NP+
Sbjct: 105 NFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKD 147
Query: 184 DYS-PLLTIDVWEVNIY 199
+ P+LT D+WE Y
Sbjct: 148 NTGIPILTCDIWEHAYY 164
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 143
NNA A+NH FF+ I+RDFGS FGSGWAW
Sbjct: 77 NNAGGAYNHKFFFDIMTPEKTIPSESLKEA-IDRDFGSFEKFKQEFQKSALDVFGSGWAW 135
Query: 144 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
LV + KD L ++ TPN +P+ + +P++ +DVWE Y
Sbjct: 136 LV-----------------ATKDGKLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYY 174
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 83 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWA 142
FNNA Q NH+ ++ I++ FGS T FGSGW
Sbjct: 65 FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWV 124
Query: 143 WLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
WL S+ + L + K PNA NP+ +PLL DVWE Y
Sbjct: 125 WLA-----------------SDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYY 164
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 143
NN NH FFW IE FGS T+FGSGWAW
Sbjct: 84 NNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAW 143
Query: 144 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
LV + L V TPN +PL +P++ +DVWE Y
Sbjct: 144 LVV------------------NNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYY 181
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 64 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXX 123
KS+E+++ + + P FN AAQ +NH F+W I FGS
Sbjct: 52 KSIEEII-----RTEKGPIFNLAAQIFNHTFYWESMXPNGGGEPTGKVADEINASFGSFA 106
Query: 124 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 183
FGSGWAWLV L V +T +A PL
Sbjct: 107 KFKEEFTNVAVGHFGSGWAWLV----------------KDTNSGKLKVYQTHDAGCPLTE 150
Query: 184 -DYSPLLTIDVWEVNIY 199
+ PLLT DVWE Y
Sbjct: 151 PNLKPLLTCDVWEHAYY 167
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 143
NN NH FW I+ FG +FGSGWAW
Sbjct: 75 NNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAW 134
Query: 144 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
LV + L V+ TPN NP++ ++P++ IDVWE Y
Sbjct: 135 LV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYY 173
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 32/136 (23%)
Query: 76 KGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 129
K D LPA NNA NH FW IERDFGS
Sbjct: 59 KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEF 116
Query: 130 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--- 186
++FGSGWAWLV K DK L VV T N +PL+ +
Sbjct: 117 EKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGA 158
Query: 187 ---PLLTIDVWEVNIY 199
P++ +DVWE Y
Sbjct: 159 SGFPIMGLDVWEHAYY 174
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 32/136 (23%)
Query: 76 KGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 129
K D LPA NNA NH FW IERDFGS
Sbjct: 59 KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEF 116
Query: 130 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--- 186
++FGSGWAWLV K DK L VV T N +PL+ +
Sbjct: 117 EKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGA 158
Query: 187 ---PLLTIDVWEVNIY 199
P++ +DVWE Y
Sbjct: 159 SGFPIMGLDVWEHAYY 174
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 32/136 (23%)
Query: 76 KGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 129
K D LPA NNA NH FW IERDFGS
Sbjct: 59 KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEF 116
Query: 130 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--- 186
++FGSGWAWLV K DK L VV T N +PL+ +
Sbjct: 117 EKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGA 158
Query: 187 ---PLLTIDVWEVNIY 199
P++ +DVWE Y
Sbjct: 159 SGFPIMGLDVWEHAYY 174
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 32/136 (23%)
Query: 76 KGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 129
K D LPA NNA NH FW IERDFGS
Sbjct: 59 KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEF 116
Query: 130 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--- 186
++FGSGWAWLV K DK L VV T N +PL+ +
Sbjct: 117 EKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANHDSPLMGEAISGA 158
Query: 187 ---PLLTIDVWEVNIY 199
P++ +DVWE Y
Sbjct: 159 SGFPIMGLDVWEHAYY 174
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 32/136 (23%)
Query: 76 KGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 129
K D LPA NNA NH FW IERDFGS
Sbjct: 59 KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEF 116
Query: 130 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--- 186
++FGSGWAWLV K DK L VV T N +PL+ +
Sbjct: 117 EKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANLDSPLMGEAISGA 158
Query: 187 ---PLLTIDVWEVNIY 199
P++ +DVWE Y
Sbjct: 159 SGFPIMGLDVWEHAYY 174
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 51/132 (38%), Gaps = 32/132 (24%)
Query: 76 KGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 129
K D LPA NNA NH FW IERDFGS
Sbjct: 59 KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEF 116
Query: 130 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--- 186
++FGSGWAWLV K DK L VV T N +PL+ +
Sbjct: 117 EKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGA 158
Query: 187 ---PLLTIDVWE 195
P++ +DVWE
Sbjct: 159 SGFPIMGLDVWE 170
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 44/126 (34%), Gaps = 28/126 (22%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXX----XXXLIERDFGSXXXXXXXXXXXXXTQFGS 139
NNA NH FW I FGS T+FGS
Sbjct: 74 NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGS 133
Query: 140 GWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDV 193
GWAWLV KD L VV T N NPL+ + +P+L +DV
Sbjct: 134 GWAWLVV------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDV 175
Query: 194 WEVNIY 199
WE Y
Sbjct: 176 WEHAYY 181
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 44/126 (34%), Gaps = 28/126 (22%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXX----XXXLIERDFGSXXXXXXXXXXXXXTQFGS 139
NNA NH FW I FGS T+FGS
Sbjct: 73 NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGS 132
Query: 140 GWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDV 193
GWAWLV KD L VV T N NPL+ + +P+L +DV
Sbjct: 133 GWAWLVV------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDV 174
Query: 194 WEVNIY 199
WE Y
Sbjct: 175 WEHAYY 180
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 44/126 (34%), Gaps = 28/126 (22%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXX----XXXLIERDFGSXXXXXXXXXXXXXTQFGS 139
NNA NH FW I FGS T+FGS
Sbjct: 93 NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGS 152
Query: 140 GWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDV 193
GWAWLV KD L VV T N NPL+ + +P+L +DV
Sbjct: 153 GWAWLVV------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDV 194
Query: 194 WEVNIY 199
WE Y
Sbjct: 195 WEHAYY 200
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 38/116 (32%), Gaps = 17/116 (14%)
Query: 84 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 143
NN NH FW I + FGS +FGSGW W
Sbjct: 109 NNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVW 168
Query: 144 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
LV L VV TPN NP++ P++ DVWE Y
Sbjct: 169 LV-----------------RNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYY 207
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 49/138 (35%), Gaps = 20/138 (14%)
Query: 64 KSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
KS+E++V + S + NN NH FW I FGS
Sbjct: 52 KSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGS 111
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
+FGSGWAWLV + L + TPN +PL
Sbjct: 112 FDKFKEQFAAAAAGRFGSGWAWLVVN------------------NGKLEITSTPNQDSPL 153
Query: 182 VWDYSPLLTIDVWEVNIY 199
+P+L +DVWE Y
Sbjct: 154 SEGKTPILGLDVWEHAYY 171
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 59/178 (33%), Gaps = 29/178 (16%)
Query: 24 RSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVV--IASYNKGDLLP 81
+ T H ++ K G + DLK KSL D++ + + +
Sbjct: 21 KETMNIHHTKHHNTYVTKLNGALEGHEDLK---------NKSLNDLISNLDAVPENIRTA 71
Query: 82 AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGW 141
NN NH FW I +GS +FGSGW
Sbjct: 72 VRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGW 131
Query: 142 AWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 199
AWLV + + ++ TP NPL+ P+L +DVWE Y
Sbjct: 132 AWLVVN------------------NGEIEIMSTPIQDNPLMEGKKPILGLDVWEHAYY 171
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 83 FNNAAQAWNHDFFWXXXXXXXXXXXXX--XXXXLIERDFGSXXXXXXXXXXXXXTQFGSG 140
FN A Q +NH+ +W LI +G+ FGSG
Sbjct: 144 FNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSG 203
Query: 141 WAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNI 198
W WLV+ +++ L +V T +A +PL D PL T DVWE
Sbjct: 204 WIWLVWDT----------------RERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAY 247
Query: 199 Y 199
Y
Sbjct: 248 Y 248
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 64 KSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 121
KSLE+++ + + K + NN + H FW +I+ F +
Sbjct: 62 KSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNT 121
Query: 122 XXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 181
++FGSG+ WLV L E+ L V+ TPN PL
Sbjct: 122 FDNLKDQLSKAAISRFGSGYGWLV---------------LDGEE---LSVMSTPNQDTPL 163
Query: 182 VWDYSPLLTIDVWEVNIY 199
PLL IDVWE Y
Sbjct: 164 QEGKIPLLVIDVWEHAYY 181
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PNA +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNA-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 61 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 120
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 121 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 163
Query: 196 VNIY 199
Y
Sbjct: 164 HAYY 167
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 61 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 120
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 121 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 163
Query: 196 VNIY 199
Y
Sbjct: 164 HAYY 167
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 48/142 (33%), Gaps = 26/142 (18%)
Query: 65 SLEDVVIASYNKGDLLPAFN-------NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIER 117
+E+ + + +KG+L A N NH FW I+R
Sbjct: 41 QIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDT-IKR 99
Query: 118 DFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNA 177
DFGS GSGW WL Y +KDK L + N
Sbjct: 100 DFGSLDNLQKRLSDITIAVQGSGWGWLGY----------------CKKDKILKIATCANQ 143
Query: 178 VNPLVWDYSPLLTIDVWEVNIY 199
+PL PL IDVWE Y
Sbjct: 144 -DPLE-GMVPLFGIDVWEHAYY 163
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKLNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKANGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNN-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVW+
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWD 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 40/124 (32%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDVW
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWA 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSG+ WL + +++ L + PN +PL PLL IDVWE
Sbjct: 120 GSGFGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 40/124 (32%), Gaps = 20/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+RDFGS
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 195
GSGW WL + +++ L + PN +PL PLL IDV E
Sbjct: 120 GSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVAE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 38/124 (30%), Gaps = 21/124 (16%)
Query: 79 LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQF 137
L PA N NH FW I+ DFGS
Sbjct: 61 LQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQKQLSASTVAVQ 119
Query: 138 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWE 195
GSGW WL Y P K +L V T +PL PL IDVWE
Sbjct: 120 GSGWGWLGY--------------CPKGK---ILKVATCANQDPLEATTGLVPLFGIDVWE 162
Query: 196 VNIY 199
Y
Sbjct: 163 HAYY 166
>pdb|1RL9|A Chain A, Crystal Structure Of Creatine-adp Arginine Kinase Ternary
Complex
Length = 357
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 KKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAW 90
K+ME++ + S + +LK YPL G K+ + +I + +GD NA + W
Sbjct: 146 KEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYW 204
>pdb|1P52|A Chain A, Structure Of Arginine Kinase E314d Mutant
Length = 357
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 KKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAW 90
K+ME++ + S + +LK YPL G K+ + +I + +GD NA + W
Sbjct: 146 KEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYW 204
>pdb|1BG0|A Chain A, Transition State Structure Of Arginine Kinase
Length = 356
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 KKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAW 90
K+ME++ + S + +LK YPL G K+ + +I + +GD NA + W
Sbjct: 145 KEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYW 203
>pdb|1M15|A Chain A, Transition State Structure Of Arginine Kinase
pdb|3M10|A Chain A, Substrate-Free Form Of Arginine Kinase
pdb|3M10|B Chain B, Substrate-Free Form Of Arginine Kinase
pdb|4GVY|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
L-Citrulline And Mgadp
pdb|4GVZ|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
D-Arginine, Mgadp, And Nitrate.
pdb|4GW0|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
Imino-L- Ornithine, Mgadp, And Nitrate.
pdb|4GW2|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
L-Ornithine, Mgadp, And Nitrate
Length = 357
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 KKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAW 90
K+ME++ + S + +LK YPL G K+ + +I + +GD NA + W
Sbjct: 146 KEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYW 204
>pdb|1P50|A Chain A, Transition State Structure Of An Arginine Kinase Mutant
Length = 356
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 KKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAW 90
K+ME++ + S + +LK YPL G K+ + +I + +GD NA + W
Sbjct: 145 KEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYW 203
>pdb|1SD0|A Chain A, Structure Of Arginine Kinase C271a Mutant
Length = 357
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 35 KKMEQRKTGGRISAKFDLKPPPYPLLGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAW 90
K+ME++ + S + +LK YPL G K+ + +I + +GD NA + W
Sbjct: 146 KEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYW 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,503,110
Number of Sequences: 62578
Number of extensions: 191384
Number of successful extensions: 467
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 75
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)