BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028581
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis
sativus GN=psaD PE=1 SV=1
Length = 207
Score = 330 bits (846), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 168/211 (79%), Positives = 178/211 (84%), Gaps = 10/211 (4%)
Query: 3 MAATTQASLFAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTE 56
MA TQA+LF P+ ST KS S PWKQSS+ S +P A + + K AE +T
Sbjct: 1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS 59
Query: 57 TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 116
EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 60 V---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 116
Query: 117 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 176
AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 117 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 176
Query: 177 GREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 207
GREGVGQN+RSIGKNVSPIEVKFTGKQVYDL
Sbjct: 177 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic
OS=Nicotiana sylvestris GN=psaD PE=2 SV=1
Length = 204
Score = 318 bits (815), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 169/206 (82%), Positives = 176/206 (85%), Gaps = 3/206 (1%)
Query: 3 MAATTQASLFAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKE 61
MA TQASLF PA S KSSAPWKQS +SFS + LK I+AMAE E
Sbjct: 1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAEEAATK-EAE 58
Query: 62 APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRE 121
APVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRE
Sbjct: 59 APVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRE 118
Query: 122 GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGV 181
G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GV
Sbjct: 119 GANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGV 178
Query: 182 GQNYRSIGKNVSPIEVKFTGKQVYDL 207
GQN+RSIGKN SPIEVKFTGKQVYDL
Sbjct: 179 GQNFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum
lycopersicum GN=psaD PE=2 SV=1
Length = 208
Score = 313 bits (803), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/208 (79%), Positives = 173/208 (83%), Gaps = 3/208 (1%)
Query: 3 MAATTQASLFAPANFSTTKSSAPWKQS-SSFSV-RPLKHNAPRTNTIKAMAEGKTETPT- 59
MA TQASLF P ++APWKQS SFS + LK T I+AMAE
Sbjct: 1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEE 60
Query: 60 KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 119
K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61 KPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
Query: 120 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 179
R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
Query: 180 GVGQNYRSIGKNVSPIEVKFTGKQVYDL 207
GVGQN+RSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic
OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1
Length = 204
Score = 305 bits (782), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/204 (76%), Positives = 164/204 (80%), Gaps = 2/204 (0%)
Query: 5 ATTQASLFAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETP-TKEAP 63
AT A +F+PA +TT S+ S S RP + +T E + P KEAP
Sbjct: 2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAP 60
Query: 64 VGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGP 123
VGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGP
Sbjct: 61 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGP 120
Query: 124 NLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQ 183
NLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG
Sbjct: 121 NLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGL 180
Query: 184 NYRSIGKNVSPIEVKFTGKQVYDL 207
N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 NMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia
oleracea GN=psaD PE=1 SV=2
Length = 212
Score = 302 bits (774), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 159/212 (75%), Positives = 174/212 (82%), Gaps = 7/212 (3%)
Query: 3 MAATTQASLFAPANFST-----TKSSAPWKQSS--SFSVRPLKHNAPRTNTIKAMAEGKT 55
MA TQA+LF+P++ S+ T+ + +KQ S +F+ +P + A +
Sbjct: 1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRAAAAAEGKAAA 60
Query: 56 ETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 115
T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG
Sbjct: 61 ATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
Query: 116 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 175
AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVN 180
Query: 176 PGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 207
PGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic
OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1
Length = 208
Score = 298 bits (764), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/149 (94%), Positives = 142/149 (95%)
Query: 59 TKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 118
TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAI
Sbjct: 60 TKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAI 119
Query: 119 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 178
MREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR
Sbjct: 120 MREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGR 179
Query: 179 EGVGQNYRSIGKNVSPIEVKFTGKQVYDL 207
EGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 180 EGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum
vulgare GN=psaD PE=1 SV=1
Length = 205
Score = 279 bits (713), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/143 (90%), Positives = 136/143 (95%)
Query: 65 GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPN 124
GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPN
Sbjct: 63 GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPN 122
Query: 125 LLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN 184
LLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN
Sbjct: 123 LLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQN 182
Query: 185 YRSIGKNVSPIEVKFTGKQVYDL 207
+RSIGKNVSPIEVKFTGK +D+
Sbjct: 183 FRSIGKNVSPIEVKFTGKNSFDI 205
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic
OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1
Length = 196
Score = 223 bits (568), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/139 (74%), Positives = 121/139 (87%)
Query: 66 FTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNL 125
+T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNL
Sbjct: 53 WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNL 112
Query: 126 LKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNY 185
LK +KEQCLAL T+LR+K+K+ FYRVFP+G+VQYLHP DGVYPEKVN GR G QN
Sbjct: 113 LKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNM 172
Query: 186 RSIGKNVSPIEVKFTGKQV 204
R IG+NV+PI+VKF+G+ +
Sbjct: 173 RRIGQNVNPIKVKFSGRMM 191
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora
paradoxa GN=psaD PE=2 SV=1
Length = 220
Score = 207 bits (528), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/146 (65%), Positives = 117/146 (80%), Gaps = 1/146 (0%)
Query: 62 APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRE 121
AP F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW E +FE+PTGGAAIMR
Sbjct: 70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRA 129
Query: 122 GPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
G NLL+LARKEQC+ALG +L+ K+KI Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR
Sbjct: 130 GENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVA 189
Query: 181 VGQNYRSIGKNVSPIEVKFTGKQVYD 206
VG N R IG+N P ++KF G++ +D
Sbjct: 190 VGSNKRRIGQNPDPAKLKFKGQETFD 215
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta
GN=psaD PE=3 SV=1
Length = 141
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 110/137 (80%), Gaps = 1/137 (0%)
Query: 71 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 130
L+ PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LAR
Sbjct: 5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLAR 64
Query: 131 KEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIG 189
KEQCLALGT++++ +KI Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG
Sbjct: 65 KEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIG 124
Query: 190 KNVSPIEVKFTGKQVYD 206
KN++P ++KFT K D
Sbjct: 125 KNLNPAQIKFTNKSFCD 141
>sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS=Porphyra purpurea
GN=psaD PE=3 SV=1
Length = 141
Score = 193 bits (490), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 105/140 (75%), Gaps = 1/140 (0%)
Query: 68 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLK 127
P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR+G NLL
Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLY 61
Query: 128 LARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYR 186
LA+KEQCLALGT+L+ K+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR +
Sbjct: 62 LAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDH 121
Query: 187 SIGKNVSPIEVKFTGKQVYD 206
SIGKNV+PI VKFT K YD
Sbjct: 122 SIGKNVNPINVKFTNKATYD 141
>sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS=Porphyra yezoensis
GN=psaD PE=3 SV=1
Length = 141
Score = 191 bits (485), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 105/140 (75%), Gaps = 1/140 (0%)
Query: 68 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLK 127
P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR G NLL
Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLY 61
Query: 128 LARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYR 186
LA+KEQCLALGT+L+SK+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR V
Sbjct: 62 LAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDH 121
Query: 187 SIGKNVSPIEVKFTGKQVYD 206
SIG+N++P++VKF K YD
Sbjct: 122 SIGQNINPVDVKFMNKATYD 141
>sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS=Odontella sinensis
GN=psaD PE=3 SV=1
Length = 139
Score = 187 bits (476), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 104/136 (76%)
Query: 71 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 130
L+ TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LAR
Sbjct: 3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLAR 62
Query: 131 KEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGK 190
KEQCLALGT+LR+ Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR V SIGK
Sbjct: 63 KEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGK 122
Query: 191 NVSPIEVKFTGKQVYD 206
N +P +KF+G Y+
Sbjct: 123 NPNPASIKFSGITTYE 138
>sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS=Skeletonema costatum
GN=psaD PE=3 SV=1
Length = 139
Score = 184 bits (468), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/136 (66%), Positives = 103/136 (75%)
Query: 71 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 130
L+ TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LAR
Sbjct: 3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLAR 62
Query: 131 KEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGK 190
KEQCLAL T+LR+ Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR V SIGK
Sbjct: 63 KEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGK 122
Query: 191 NVSPIEVKFTGKQVYD 206
N +P +KF+G Y+
Sbjct: 123 NPNPASIKFSGITTYE 138
>sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS=Mastigocladus laminosus
GN=psaD PE=3 SV=1
Length = 142
Score = 184 bits (466), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 103/130 (79%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MR+G NLL LARKEQC+A
Sbjct: 9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIA 68
Query: 137 LGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIE 196
LG++LR Y+ YR++PNGE Y+HP DGV+PEKVNPGR+ V N R IG+N P +
Sbjct: 69 LGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAK 128
Query: 197 VKFTGKQVYD 206
+KF+G YD
Sbjct: 129 LKFSGVATYD 138
>sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaD PE=1 SV=2
Length = 141
Score = 181 bits (458), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 103/133 (77%), Gaps = 3/133 (2%)
Query: 78 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLAL 137
P FGGSTGGLL KA EE Y ITW S EQ+FEMPTGGAAIM EG NLL LARKEQCLAL
Sbjct: 9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLAL 68
Query: 138 GTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSP 194
GT+LR+K+K K Y+ YRV+P+GEVQYLHP DGV+PEKVN GRE G R IG+N P
Sbjct: 69 GTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEP 128
Query: 195 IEVKFTGKQVYDL 207
+ +KF+GK Y++
Sbjct: 129 VTIKFSGKAPYEV 141
>sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD
PE=1 SV=3
Length = 142
Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 101/132 (76%), Gaps = 3/132 (2%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M EG NLL ARKEQ LA
Sbjct: 9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALA 68
Query: 137 LGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVS 193
LGT+LR+K+K K Y+ YR FP +V YLHPKDGV+PEKVN GR G+ R IG+N +
Sbjct: 69 LGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPN 128
Query: 194 PIEVKFTGKQVY 205
P +KFTGKQ Y
Sbjct: 129 PATIKFTGKQPY 140
>sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS=Cyanidium caldarium
GN=psaD PE=3 SV=1
Length = 140
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 71 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 130
L+ PSP F G+TGG LR + +EE Y ITW S E IFE+PTGG A M+ G NLL LA+
Sbjct: 5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAK 64
Query: 131 KEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIG 189
KEQCLALG +L+ K+KI ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G+ +IG
Sbjct: 65 KEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIG 124
Query: 190 KNVSPIEVKFTGKQVY 205
KN++P EVKFT K ++
Sbjct: 125 KNLNPAEVKFTHKTIF 140
>sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS=Thermosynechococcus
vulcanus GN=psaD PE=1 SV=2
Length = 139
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Query: 78 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLAL 137
P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MREG NL+ ARKEQCLAL
Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLAL 68
Query: 138 GT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIE 196
+LR + Y+ YR+FP+GE +HPKDGV+PEKVN GRE V RSIG+N +P +
Sbjct: 69 AAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQ 128
Query: 197 VKFTGKQVYD 206
+KFTGK+ YD
Sbjct: 129 LKFTGKKPYD 138
>sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS=Thermosynechococcus
elongatus (strain BP-1) GN=psaD PE=1 SV=2
Length = 139
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Query: 78 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLAL 137
P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MREG NL+ ARKEQCLAL
Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLAL 68
Query: 138 GT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIE 196
+LR + Y+ YR+FP+GE +HPKDGV+PEKVN GRE V RSIG+N +P +
Sbjct: 69 AAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQ 128
Query: 197 VKFTGKQVYD 206
+KFTGK+ YD
Sbjct: 129 LKFTGKKPYD 138
>sp|P0A421|PSAD_SYNEL Photosystem I reaction center subunit II OS=Synechococcus elongatus
GN=psaD PE=1 SV=2
Length = 139
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Query: 78 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLAL 137
P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MREG NL+ ARKEQCLAL
Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLAL 68
Query: 138 GT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIE 196
+LR + Y+ YR+FP+GE +HPKDGV+PEKVN GRE V RSIG+N +P +
Sbjct: 69 AAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQ 128
Query: 197 VKFTGKQVYD 206
+KFTGK+ YD
Sbjct: 129 LKFTGKKPYD 138
>sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3
Length = 139
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 100/131 (76%), Gaps = 2/131 (1%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+P+F GSTGGLL KA EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE +A
Sbjct: 9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIA 68
Query: 137 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPI 195
LG +LR K+KI Y+ YR+ P+GE ++HP DGV+PEKVNPGRE V N RSIG+N +P
Sbjct: 69 LGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPS 127
Query: 196 EVKFTGKQVYD 206
+VKF+GK YD
Sbjct: 128 QVKFSGKATYD 138
>sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC
8009) GN=psaD PE=1 SV=1
Length = 138
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 100/131 (76%), Gaps = 2/131 (1%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M +G NLL LARKEQ +A
Sbjct: 8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIA 67
Query: 137 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPI 195
LG +LR K+KI Y+ YR+FPNGE ++HP DGV+PEKVN GRE V R IG+N SP
Sbjct: 68 LGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPA 126
Query: 196 EVKFTGKQVYD 206
++KF+GK YD
Sbjct: 127 QLKFSGKYTYD 137
>sp|P58573|PSAD_NOSS1 Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=psaD PE=3 SV=1
Length = 139
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 99/131 (75%), Gaps = 2/131 (1%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+P+F GSTGGLL KA EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE +A
Sbjct: 9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIA 68
Query: 137 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPI 195
LG +LR K+KI Y+ YR+ P+GE ++HP DGV+PEKVN GRE V N RSIG+N +P
Sbjct: 69 LGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPS 127
Query: 196 EVKFTGKQVYD 206
+VKF+GK YD
Sbjct: 128 QVKFSGKATYD 138
>sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS=Gloeobacter violaceus
(strain PCC 7421) GN=psaD PE=1 SV=1
Length = 144
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGAA M G N+L LARKEQC A
Sbjct: 13 TPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHA 72
Query: 137 LGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPI 195
L +L S +KI+ + YRV+PNGE + P DGV EK NPGRE VG R IG N +P+
Sbjct: 73 LHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPV 132
Query: 196 EVKFTGKQVYDL 207
+VKFTGK+ +D+
Sbjct: 133 DVKFTGKETFDV 144
>sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS=Fremyella diplosiphon
GN=psaD PE=1 SV=1
Length = 138
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Query: 77 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLA 136
+P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M++G NLL LARKE +A
Sbjct: 8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIA 67
Query: 137 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPI 195
LG +LR K+KI Y+ YR+ P GE +HP DGV+PEKVN GRE V R IG+N +P
Sbjct: 68 LGGQLR-KFKITDYKIYRILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNPS 126
Query: 196 EVKFTGKQVYD 206
+KF+GK YD
Sbjct: 127 AIKFSGKYTYD 137
>sp|P84563|PSAD_POPEU Photosystem I reaction center subunit II (Fragment) OS=Populus
euphratica GN=psaD PE=1 SV=1
Length = 29
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/29 (96%), Positives = 29/29 (100%)
Query: 61 EAPVGFTPPELDPNTPSPIFGGSTGGLLR 89
EAPVGFTPPELDP+TPSPIFGGSTGGLLR
Sbjct: 1 EAPVGFTPPELDPSTPSPIFGGSTGGLLR 29
>sp|P20117|PSAD_PEA Photosystem I reaction center subunit II (Fragment) OS=Pisum
sativum GN=psaD PE=1 SV=1
Length = 36
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 52 EGKTETPTKEAPVGFTPPELDPNTPSPIFG 81
+ T+ T EAPVGFTP ELDPNT S IFG
Sbjct: 7 DAATDVATXEAPVGFTPXELDPNTXSXIFG 36
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,760,958
Number of Sequences: 539616
Number of extensions: 3879442
Number of successful extensions: 6722
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6670
Number of HSP's gapped (non-prelim): 49
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)