Query 028581
Match_columns 207
No_of_seqs 89 out of 91
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 23:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_D Photosystem I reaction 100.0 9E-109 3E-113 696.5 8.6 203 1-207 1-212 (212)
2 1jb0_D Photosystem 1 reaction 100.0 1.4E-93 4.9E-98 574.6 8.2 135 72-207 2-138 (138)
3 3qu6_A IRF3 protein; helix-tur 27.5 20 0.0007 27.7 1.1 10 149-158 107-116 (116)
4 4ddp_A Beclin-1; ECD, autophag 24.5 16 0.00056 30.7 0.1 32 133-164 69-100 (210)
5 1jlx_A Agglutinin, amaranthin, 24.4 19 0.00066 32.1 0.5 62 96-164 149-214 (303)
6 2vog_B BCL-2-modifying factor; 24.4 22 0.00075 22.0 0.6 10 127-136 8-17 (27)
7 3vp7_A Vacuolar protein sortin 23.4 18 0.00062 30.6 0.2 32 133-164 43-74 (220)
8 3qt5_A Mevalonate diphosphate 22.7 57 0.0019 27.2 3.0 31 115-145 283-313 (332)
9 4ayb_K DNA-directed RNA polyme 21.3 55 0.0019 24.6 2.4 19 146-164 73-91 (95)
10 2dll_A Interferon regulatory f 19.4 44 0.0015 25.6 1.6 12 149-160 107-118 (121)
No 1
>2wsc_D Photosystem I reaction center subunit II, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_D* 2wsf_D* 2o01_D* 3lw5_D*
Probab=100.00 E-value=9.4e-109 Score=696.55 Aligned_cols=203 Identities=79% Similarity=1.207 Sum_probs=137.5
Q ss_pred CcchhchhcccccccccCCCC-----cccccccCccccccCCCCCCCccchhhhh-hcC-CCC--CCCccCCCcCCCCCC
Q 028581 1 MAMAATTQASLFAPANFSTTK-----SSAPWKQSSSFSVRPLKHNAPRTNTIKAM-AEG-KTE--TPTKEAPVGFTPPEL 71 (207)
Q Consensus 1 mamA~~tqas~~tp~~~~~~~-----~~~~w~~ss~~s~~~~~~~~~~~~~~~a~-~~~-~~~--~~~~~ap~~f~p~~l 71 (207)
|||| |||++|+++++++.. +..||++|++++|. .+. +...++++++ +++ +++ ++++++|++|+||+|
T Consensus 1 mama--tqa~~~~~~~~s~~~~~~~~~~~~w~~s~~~~~~-~k~-~~~~~~~~~a~~ae~~~a~~~~~~~ap~~f~p~~~ 76 (212)
T 2wsc_D 1 MAMG--TPATLFSRSSLSSAKPIETRLTTSFKQPSAVTFA-SKP-ASRLHTIRAAAAAEGKAAAATETKEATKAFTPPEL 76 (212)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred Cccc--cccccccccccccccccccccccccccccccccc-ccc-cccccchhhhhhcccccccccccccCCCccCCccc
Confidence 8999 999999999887533 24599999999996 222 2333444444 332 222 234689999999999
Q ss_pred CCCCCCCccccCccccccccccceeEEEEecCCcceeeeccCCceeecccCccceeehhhhhHHHHhhccccceeeeeEe
Q 028581 72 DPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQF 151 (207)
Q Consensus 72 ~~~~p~P~FgGSTGGlLr~A~~EEkYaITWtS~keQvFEmPTGGAAiM~~G~NLLylARKEQClALgtqLrtkfKI~yki 151 (207)
|+++|+|+||||||||||+||+||||||||+|+|||||||||||||+||+|+|||||||||||||||+|||+||||||||
T Consensus 77 ~l~~~~P~FgGSTGGlLr~A~~EEkYaITWtS~keQvFEmPTGGAAiM~~G~NLLylARKEQClALgtqLrtkfKIdyki 156 (212)
T 2wsc_D 77 DPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQF 156 (212)
T ss_dssp SSCCCCSCCCCCSSSCCSTTTSSCCCEEECCCSSCCCCCTTTTCCCCCCCSSCEEECSSTTTTSHHHHTTTSSCCSCCEE
T ss_pred cCCCCCcccccccccccccccceeeEEEEecCChhheeecCCCcchhhccCcchheehhHHHHHHHHHhhhhccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceEeeccCCCCCCcccCCCccccCCccccCCCCCCcceEEecccccccC
Q 028581 152 YRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 207 (207)
Q Consensus 152 YRifP~Gevq~LHPkDGVfPEKVN~GR~~vg~~~r~IGkN~nP~~vKFtgk~tyd~ 207 (207)
||||||||+|||||||||||||||+||++||+|+|+||+|+||++||||||++||+
T Consensus 157 YRifP~Ge~q~LhPkDGVfPEKVN~GR~~vg~~~r~IG~N~nP~~~KFsgk~~yd~ 212 (212)
T 2wsc_D 157 YRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212 (212)
T ss_dssp ECCCSSCCSCCTTTSSSCSSSCCSCCCSCCCCSSSCSTTTTSCCCSCCCTTSSCCC
T ss_pred EeecCCCceEEecCcCCCCccccCCcccccCcCcccccCCCCcceEEecCcccccC
Confidence 99999999999999999999999999999999999999999999999999999995
No 2
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1 PDB: 3pcq_D*
Probab=100.00 E-value=1.4e-93 Score=574.61 Aligned_cols=135 Identities=61% Similarity=1.044 Sum_probs=133.4
Q ss_pred CCCCCCCccccCccccccccccceeEEEEecCCcceeeeccCCceeecccCccceeehhhhhHHHHhhc-cccceee-ee
Q 028581 72 DPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTR-LRSKYKI-KY 149 (207)
Q Consensus 72 ~~~~p~P~FgGSTGGlLr~A~~EEkYaITWtS~keQvFEmPTGGAAiM~~G~NLLylARKEQClALgtq-LrtkfKI-~y 149 (207)
++++++|+||||||||||+||+||||||||+|+|||||||||||||+||+|+|||||||||||||||+| ||+ ||| ||
T Consensus 2 ~l~~~~P~fgGSTGGlL~~A~~EEkYaITWtS~keQvFEmPTGGAA~M~~G~NLlylARKEQclALgtQqLrt-fKI~dy 80 (138)
T 1jb0_D 2 TLTGQPPLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRP-RKINDY 80 (138)
T ss_dssp CCCCBCCBCCCBTTSBCTHHHHTCEEEEEEEESSCEEEECTTSSEEEECSEEEEEEESSHHHHHHHHHHHTGG-GTCCCC
T ss_pred CcCCCCCccccccccccccccceeeEEEEecCChhhheecCCCchhhhccCcceeEeecHHHHHHhhhcceee-eecccc
Confidence 588999999999999999999999999999999999999999999999999999999999999999999 999 999 89
Q ss_pred EeeeecCCCceEeeccCCCCCCcccCCCccccCCccccCCCCCCcceEEecccccccC
Q 028581 150 QFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 207 (207)
Q Consensus 150 kiYRifP~Gevq~LHPkDGVfPEKVN~GR~~vg~~~r~IGkN~nP~~vKFtgk~tyd~ 207 (207)
||||||||||+|||||||||||||||+||++||+++|+||+||||++||||||++||+
T Consensus 81 kiYRifP~Ge~~~LhPkDGVfpEKvN~GR~~vg~~~r~IG~NpnP~~~KFsgk~t~d~ 138 (138)
T 1jb0_D 81 KIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYDP 138 (138)
T ss_dssp EEEEECTTCCEEEEETTTSSCSSSCCTTCCCCSEESSCGGGCCCHHHHTTSCCCTTCC
T ss_pred eEEEEcCCCceEEecCCCCCCcccccCcccccCcCcccccCCCCcceEEecCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 3
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=27.47 E-value=20 Score=27.66 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=6.9
Q ss_pred eEeeeecCCC
Q 028581 149 YQFYRVFPNG 158 (207)
Q Consensus 149 ykiYRifP~G 158 (207)
||||||-|.|
T Consensus 107 ~KVY~~~~~~ 116 (116)
T 3qu6_A 107 HKIYEFVNSG 116 (116)
T ss_dssp EEEEEEC---
T ss_pred eEEEEecCCC
Confidence 9999999987
No 4
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=24.51 E-value=16 Score=30.65 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=21.8
Q ss_pred hHHHHhhccccceeeeeEeeeecCCCceEeec
Q 028581 133 QCLALGTRLRSKYKIKYQFYRVFPNGEVQYLH 164 (207)
Q Consensus 133 QClALgtqLrtkfKI~ykiYRifP~Gevq~LH 164 (207)
|+.-|..-|-.++++.++-||+.|.|+.-++-
T Consensus 69 q~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~ 100 (210)
T 4ddp_A 69 QTVLLLHALANKMGLKFQRYRLVPYGNHSYLE 100 (210)
T ss_dssp HHHHHHHHHHHHHTCCCSSEEEECCGGGCEEE
T ss_pred HHHHHHHHHHHHcCCCccceeEEecCCcceee
Confidence 33334444555567778889999999987773
No 5
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A
Probab=24.44 E-value=19 Score=32.08 Aligned_cols=62 Identities=31% Similarity=0.502 Sum_probs=38.6
Q ss_pred eEEEEecCCcceeeeccCCceeecccCccceeeh-hhhh---HHHHhhccccceeeeeEeeeecCCCceEeec
Q 028581 96 FYVITWESPKEQIFEMPTGGAAIMREGPNLLKLA-RKEQ---CLALGTRLRSKYKIKYQFYRVFPNGEVQYLH 164 (207)
Q Consensus 96 kYaITWtS~keQvFEmPTGGAAiM~~G~NLLylA-RKEQ---ClALgtqLrtkfKI~ykiYRifP~Gevq~LH 164 (207)
|=+|.| |-++.||-| =+|-+|+|-+||+ |.|. ||..+.-=...-+.-++|| +.++|.+..-|
T Consensus 149 ftv~d~----~~~~~LPk~--~v~fKGdNgkYL~~~~~~~~~~LqF~~~d~~d~~~~~qv~-~~~dG~i~vks 214 (303)
T 1jlx_A 149 FHVIDW----KSIFQFPKG--YVTFKGNNGKYLGVITINQLPCLQFGYDNLNDPKVAHQMF-VTSNGTICIKS 214 (303)
T ss_dssp EEEEES----GGGGCCCCS--SEEEECTTSCEEEEEEETTEEEEEEEECCTTCGGGCEEEE-ECTTSCEEEEE
T ss_pred EEEEch----hhhhhCcce--eEEEEcCCCcEEEEEEcCCceeeEecCCCCCCCccceEEE-EcCCceEEEEe
Confidence 558888 678999987 4678999999985 4454 5544421111112235664 55677776655
No 6
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=24.40 E-value=22 Score=21.96 Aligned_cols=10 Identities=60% Similarity=1.039 Sum_probs=8.1
Q ss_pred eehhhhhHHH
Q 028581 127 KLARKEQCLA 136 (207)
Q Consensus 127 ylARKEQClA 136 (207)
..|||=||++
T Consensus 8 ~Ia~KLQcI~ 17 (27)
T 2vog_B 8 QIARKLQCIA 17 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4689999985
No 7
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=23.45 E-value=18 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=23.2
Q ss_pred hHHHHhhccccceeeeeEeeeecCCCceEeec
Q 028581 133 QCLALGTRLRSKYKIKYQFYRVFPNGEVQYLH 164 (207)
Q Consensus 133 QClALgtqLrtkfKI~ykiYRifP~Gevq~LH 164 (207)
|++-|..-|-.++++.++=||+.|+|+.-++-
T Consensus 43 q~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~ 74 (220)
T 3vp7_A 43 QLILLLATINKNLKINLVDYELQPMGSFSKIK 74 (220)
T ss_dssp HHHHHHHHHHHHTTCCCSSEEEECCGGGCEEE
T ss_pred HHHHHHHHHHHHhCCCcccceEEeCCCcceEe
Confidence 55555555666666777779999999987773
No 8
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=22.67 E-value=57 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=26.7
Q ss_pred ceeecccCccceeehhhhhHHHHhhccccce
Q 028581 115 GAAIMREGPNLLKLARKEQCLALGTRLRSKY 145 (207)
Q Consensus 115 GAAiM~~G~NLLylARKEQClALgtqLrtkf 145 (207)
|+.++-.|+|++-|+.+|+.-.+...|+..|
T Consensus 283 ~a~~SGaGPtv~~l~~~~~a~~v~~~l~~~~ 313 (332)
T 3qt5_A 283 CYFTMDAGPNVKVLVEKKNKQAVMEQFLKVF 313 (332)
T ss_dssp EEEECCSSSCEEEEEEHHHHHHHHHHHHTTS
T ss_pred EEEEeCCCCcEEEEECHHHHHHHHHHHHHhC
Confidence 6778899999999999998888888888644
No 9
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I 4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Probab=21.27 E-value=55 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.1
Q ss_pred eeeeEeeeecCCCceEeec
Q 028581 146 KIKYQFYRVFPNGEVQYLH 164 (207)
Q Consensus 146 KI~ykiYRifP~Gevq~LH 164 (207)
||-+-|-|.+|||..++..
T Consensus 73 kiP~iIrR~lPnG~~E~~~ 91 (95)
T 4ayb_K 73 VLPITIRRRLPNGKIILLS 91 (95)
T ss_dssp CCCEEEEEECTTSCEEEEC
T ss_pred CCCEEEEEeCCCCCEEEEE
Confidence 7889999999999999983
No 10
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.37 E-value=44 Score=25.58 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.4
Q ss_pred eEeeeecCCCce
Q 028581 149 YQFYRVFPNGEV 160 (207)
Q Consensus 149 ykiYRifP~Gev 160 (207)
|||||+.|.++.
T Consensus 107 ~kVYrl~~~~~~ 118 (121)
T 2dll_A 107 YKVYRIVPESGP 118 (121)
T ss_dssp EEEEEECCSSSC
T ss_pred eEEEEECCcccC
Confidence 999999998763
Done!