Query 028582
Match_columns 207
No_of_seqs 133 out of 1149
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 23:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_N Ribosomal protein L15; 100.0 9.5E-60 3.2E-64 413.5 4.3 188 1-199 3-190 (257)
2 3v2d_P 50S ribosomal protein L 100.0 1.3E-46 4.6E-51 308.2 9.5 116 74-199 1-119 (150)
3 3r8s_L 50S ribosomal protein L 100.0 2.1E-46 7.2E-51 304.5 6.6 114 75-199 1-114 (143)
4 2zjr_I 50S ribosomal protein L 100.0 1.5E-42 5.3E-47 284.5 6.3 113 74-199 1-113 (156)
5 1vq8_L 50S ribosomal protein L 99.9 2.1E-25 7.1E-30 184.2 3.1 99 85-199 3-114 (165)
6 2zkr_l 60S ribosomal protein L 99.8 7.6E-23 2.6E-27 165.5 1.1 101 85-199 3-116 (148)
7 3j21_L 50S ribosomal protein L 98.9 7.4E-10 2.5E-14 90.0 2.7 97 87-199 5-117 (147)
8 4a17_K L29, RPL27A, 60S riboso 98.8 3.5E-10 1.2E-14 92.1 -2.4 105 87-199 5-117 (149)
9 3j21_P 50S ribosomal protein L 98.6 5.2E-09 1.8E-13 82.5 -0.8 39 127-172 26-64 (120)
10 1vq8_O 50S ribosomal protein L 98.4 2E-08 6.8E-13 78.7 -0.9 38 126-170 22-59 (116)
11 3jyw_O 60S ribosomal protein L 97.5 6.8E-06 2.3E-10 65.1 -2.4 28 128-161 22-49 (121)
12 2zkr_o 60S ribosomal protein L 97.3 1.2E-05 4.1E-10 68.0 -2.3 29 127-161 40-68 (188)
13 3o58_Y 60S ribosomal protein L 96.0 0.0057 1.9E-07 49.9 4.1 27 134-161 53-80 (149)
14 3iz5_R 60S ribosomal protein L 95.2 0.002 6.7E-08 54.6 -1.5 29 127-161 41-69 (188)
15 3izc_R 60S ribosomal protein R 94.9 0.0022 7.4E-08 54.2 -1.9 29 127-161 41-69 (186)
16 4a17_N RPL18, 60S ribosomal pr 94.9 0.0015 5.3E-08 54.9 -2.8 30 126-161 41-70 (181)
17 3iz5_O 60S ribosomal protein L 94.0 0.024 8.3E-07 45.9 2.4 64 88-161 6-80 (144)
18 2bpa_3 Protein (subunit of bac 67.8 6.7 0.00023 24.9 3.7 20 105-128 17-36 (37)
19 4a17_K L29, RPL27A, 60S riboso 56.6 1 3.6E-05 36.2 -2.0 36 102-137 15-50 (149)
No 1
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.5e-60 Score=413.54 Aligned_cols=188 Identities=70% Similarity=1.081 Sum_probs=114.9
Q ss_pred CCccccccccCCCCCCCCccccccccCCCCCCCccccceecccCCCCceEEeeccccccccccccCCCCCCCeeecCCCC
Q 028582 1 MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLG 80 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rm~L~nL~ 80 (207)
||+++++| |+|+++||||||+++|.+++|+..| ++++++++ +++||+++|++++. ..++.++|+||||+
T Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~m~L~~L~ 71 (257)
T 3bbo_N 3 AASLIPVS--SLPSLASPFKGNVKTLVAKPCLCPC--LKIQRTKL--RVSVVNKAASAYNV-----KSSGENVFRLDNLG 71 (257)
T ss_dssp -------------------------------------------------------------------------CCCSSSC
T ss_pred cccccccc--cCCCCCCcccccccccccccccccc--hhhhccCc--cceeEeeccccccc-----ccCCCCceecccCc
Confidence 89999999 6678999999999999999999888 66666655 88999999987543 24578899999999
Q ss_pred CCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeeeeechhhh
Q 028582 81 PQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE 160 (207)
Q Consensus 81 p~pGark~rKRvGRG~GSG~GKTsGRGhKGQksRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~ 160 (207)
|++||++++||+|||+|||+|||||||||||++|+|+++++|||||||||||||||+|||+|.++.++++|.+|||++|+
T Consensus 72 p~~Gs~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~ 151 (257)
T 3bbo_N 72 PQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIE 151 (257)
T ss_dssp CCCCCCSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCS
T ss_pred CCCCCccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCCCcchhhcccccccCCccccCcceeeeEeHHHHh
Confidence 99999999999999999999999999999999999988999999999999999999779998765556799999999998
Q ss_pred hhCCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEeecCC
Q 028582 161 AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 161 ~~r~d~~~~It~e~L~~~glv~~~g~~~~~~VKILa~~~ 199 (207)
+.+|+++++||+++|++.|+|+..++...++|||||.|-
T Consensus 152 ~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~Ge 190 (257)
T 3bbo_N 152 NAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGE 190 (257)
T ss_dssp CSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSC
T ss_pred hcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCc
Confidence 534899999999999999999875544567899999874
No 2
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=100.00 E-value=1.3e-46 Score=308.15 Aligned_cols=116 Identities=42% Similarity=0.670 Sum_probs=106.4
Q ss_pred eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCC-cccCCCCCeEEecccccCCCCCC--CCCCCe
Q 028582 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPKLRGIAGGM--HAGLPK 150 (207)
Q Consensus 74 m~L~nL~p~pGark~rKRvGRG~GSG~GKTsGRGhKGQksRsG~~~r~-GFEGGQtPLyRRlPK~RGF~ng~--~~~~~~ 150 (207)
|+||||+|+|||++++||+|||+|||+|||||||||||+||+|+.+++ ||||||||||||||| |||+|.+ +.++++
T Consensus 1 m~L~~L~p~~Gs~k~~kRvGRG~gSG~GkT~GrG~KGqkaRsg~~~~~~gFEGGQ~Pl~rRlPK-~GF~~~~~~~~~~~~ 79 (150)
T 3v2d_P 1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK-RGMQGQVPGEIKRPR 79 (150)
T ss_dssp CCGGGCCCCTTSSCCCCCCSSCTTTSCCTTTTCCSSSTTTSTTCCSCTTTCCTTSCCTTTTSCC-CSCCCCTTCCCCCCC
T ss_pred CccccCCCCCCCCcCCccccCCCCCCCCccCCCCCCcCcCCCCCCCCCccccCCCCccEEEcCc-cCccCccccccccce
Confidence 789999999999999999999999999999999999999999988999 999999999999999 6999831 246789
Q ss_pred eeeeechhhhhhCCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEeecCC
Q 028582 151 YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 151 y~~VNL~~L~~~r~d~~~~It~e~L~~~glv~~~g~~~~~~VKILa~~~ 199 (207)
|.+|||++|+. |+ + +||+++|+++|||+. +++||||+.|-
T Consensus 80 y~~VNL~~L~~--~~-G-~I~~~~L~~~glv~~-----~~~VKvLg~G~ 119 (150)
T 3v2d_P 80 YQGVNLKDLAR--FE-G-EVTPELLVRAGLLKK-----GYRLKILGEGE 119 (150)
T ss_dssp EEEEEHHHHTT--CC-S-EECHHHHHTTTSSCT-----TCEEEEECSSC
T ss_pred EEEEEHHHHhh--cC-C-cccHHHHHHCCCccc-----ccceEEEecCC
Confidence 99999999984 77 5 999999999999975 36999999874
No 3
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=100.00 E-value=2.1e-46 Score=304.52 Aligned_cols=114 Identities=48% Similarity=0.734 Sum_probs=105.1
Q ss_pred ecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeeee
Q 028582 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV 154 (207)
Q Consensus 75 ~L~nL~p~pGark~rKRvGRG~GSG~GKTsGRGhKGQksRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~V 154 (207)
+||||+|+|||++++||+|||+|||+|||||||||||+||||+++++||||||||||||||| +||+|. ++++|.+|
T Consensus 1 ~L~~L~p~~Gs~k~~kRvGRG~gsG~Gkt~GrG~KGqkaRsG~~~~~gFEGGQ~Pl~rRlPK-~GF~~~---~~~~y~~V 76 (143)
T 3r8s_L 1 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK-FGFTSR---KAAITAEI 76 (143)
T ss_dssp CCSSCCCCTTSSCCCCCCSSCSTTSSCSGGGSCSSSTTTSTTCCCCTTCCTTSCCHHHHSCC-CCCCCS---TGGGEEEC
T ss_pred CcccCCCCCCCCcCcccccCcCCCCCCCCCCCCCCCCcCCCCCCCCCccccCCCccEEEccc-cccCCc---ccceeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999 699874 46899999
Q ss_pred echhhhhhCCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEeecCC
Q 028582 155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 155 NL~~L~~~r~d~~~~It~e~L~~~glv~~~g~~~~~~VKILa~~~ 199 (207)
||++|++ |+ +++||+++|+++|||+.. .++||||+.|-
T Consensus 77 NL~~L~~--~~-~~~I~~~~L~~~glv~~~----~~~VKVLg~Ge 114 (143)
T 3r8s_L 77 RLSDLAK--VE-GGVVDLNTLKAANIIGIQ----IEFAKVILAGE 114 (143)
T ss_dssp CSSSSSC--SS-SSEEEHHHHGGGTSSCTT----CCEEECCCCSC
T ss_pred EHHHhhh--cc-CCeecHHHHHHcCccccC----CCceEEeeCCc
Confidence 9999984 65 489999999999999865 57899999874
No 4
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=100.00 E-value=1.5e-42 Score=284.50 Aligned_cols=113 Identities=37% Similarity=0.585 Sum_probs=101.1
Q ss_pred eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeee
Q 028582 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP 153 (207)
Q Consensus 74 m~L~nL~p~pGark~rKRvGRG~GSG~GKTsGRGhKGQksRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~ 153 (207)
|+||||+|++||++++||+|||+| |+|||||||||||++|+|+..++||||||||||||||| +||+| ++++|.+
T Consensus 1 m~L~~L~p~~gs~~~~kRvGRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfEGGQ~Pl~rrlPK-~GF~n----~~~~~~~ 74 (156)
T 2zjr_I 1 MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK-RGFNN----VGTTYEV 74 (156)
T ss_dssp ---CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCC-CCCCC----CCCCCCE
T ss_pred CccccCCCCCCCccCCcccCCCCC-CCCCcCCCCCCCCCCCCCCCCCCceEcCcCCCeEecCC-CCCcC----CceEEEe
Confidence 789999999999999999999999 99999999999999999988899999999999999999 69986 4678999
Q ss_pred eechhhhhhCCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEeecCC
Q 028582 154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 154 VNL~~L~~~r~d~~~~It~e~L~~~glv~~~g~~~~~~VKILa~~~ 199 (207)
|||++|+. |.+++ ||+++|+++++|+.. .++||||+.|-
T Consensus 75 VNL~~L~~--l~~~~-i~~~~L~~~gli~~~----~~~vKVLG~G~ 113 (156)
T 2zjr_I 75 VKLSQLQD--LEDTT-FDRDTLEAYRLVRRK----NRPVKLLASGE 113 (156)
T ss_dssp ECHHHHTT--SCCCC-CCTTTTHHHHHCCCC----SSCCEECCCCC
T ss_pred echhHHHh--hhcCC-cCHHHHHhCCcEecc----ccceEEeeCCc
Confidence 99999984 66666 999999999999864 57899998864
No 5
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.90 E-value=2.1e-25 Score=184.17 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=81.8
Q ss_pred CCccccccccCCCCC-CCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeeeeechhhhhhC
Q 028582 85 SRKRGKRKGRGIAAG-QGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAG 163 (207)
Q Consensus 85 ark~rKRvGRG~GSG-~GKTsGRGhKGQksRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r 163 (207)
++++++|+|||+||| +|||||||||||++|+|+..+.|| |||+ ||| +||+|.+ ..+.+|.+|||++|+. .
T Consensus 3 ~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~-----pl~k-lPK-~GF~~~~-~~r~~~~~VNL~~L~~-l 73 (165)
T 1vq8_L 3 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFH-----NHEP-LGK-SGFKRPQ-KVQEEAATIDVREIDE-N 73 (165)
T ss_dssp CHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCT-----TSCC-SCC-CCCCCCG-GGCCCEEEEEHHHHHH-T
T ss_pred ccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCc-----eeeE-CCC-CCCccCC-cccceeeeEEHHHHHH-H
Confidence 456678999999999 999999999999999998888888 9999 999 6998743 2246899999999974 2
Q ss_pred C-----------CCCC-ccCHHHHHHCCCCCCCCCCCCCCeEEeecCC
Q 028582 164 F-----------LEGD-EVSLETLKKKGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 164 ~-----------d~~~-~It~e~L~~~glv~~~g~~~~~~VKILa~~~ 199 (207)
+ +++. +||+++|++.|+|. +.||||+.|-
T Consensus 74 ~~~~~~~g~~~~~~~~~vId~~~L~~~gli~-------~~vKVLG~G~ 114 (165)
T 1vq8_L 74 VTLLAADDVAEVEDGGFRVDVRDVVEEADDA-------DYVKVLGAGQ 114 (165)
T ss_dssp TGGGTTSCCCC-----CEEEGGGTCTTCTTS-------SEEEEECCSC
T ss_pred HHHhhhccccccCCCCeEECHHHHHHCCccC-------CceEEecCCc
Confidence 2 4453 89999999999992 6799998864
No 6
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.85 E-value=7.6e-23 Score=165.50 Aligned_cols=101 Identities=26% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCccccccccCCCCCCCCccccCCCCCCC-CCCCCCCCcccCCCCCeEEe--------cccccCCCCCCCCCCC-ee-ee
Q 028582 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKS-RSGPGVRKGFEGGQMPLYRR--------IPKLRGIAGGMHAGLP-KY-VP 153 (207)
Q Consensus 85 ark~rKRvGRG~GSG~GKTsGRGhKGQks-RsG~~~r~GFEGGQtPLyRR--------lPK~RGF~ng~~~~~~-~y-~~ 153 (207)
++++++|++||+ +|||+||+||++ |+|+ +||||||||+|++ ||| +||+|.+ .... +| .+
T Consensus 3 ~r~~k~rk~RG~-----~t~G~G~~gq~r~~~Gg---~G~aGgq~h~~~~~~k~~p~~lpK-~GF~~~~-~~~~~~~~~~ 72 (148)
T 2zkr_l 3 SRLRKTRKLRGH-----VSHGHGRIGKHRKHPGG---RGNAGGMHHHRINFDKYHPGYFGK-VGMKHYH-LKRNQSFCPT 72 (148)
T ss_dssp ---CHHHHTTTT-----SCSSCCSCSCC--CCSC---SSSTTTTTTTCSSCTTTC--------------------CCCCE
T ss_pred CccCCcccCCCC-----cCcCCCCCCCCCCCCCC---CCcccCCCCCEEeccccCCCcCCC-CCcCCCC-ccccceecce
Confidence 466788999995 999999999999 8874 6999999999999 999 7998742 2122 45 89
Q ss_pred eechhhhhhCCCCCCccCHHH-H-HHCCCCCCCCCCCCCCeEEeecCC
Q 028582 154 VNLKDIEAAGFLEGDEVSLET-L-KKKGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 154 VNL~~L~~~r~d~~~~It~e~-L-~~~glv~~~g~~~~~~VKILa~~~ 199 (207)
|||++|+. .++++.++|++. | .++++|+.. ....||||+.|-
T Consensus 73 VNl~~L~~-l~~~~~~~~~~~~l~~~~~vI~~~---~~~~vKVLG~Ge 116 (148)
T 2zkr_l 73 VNLDKPWT-LVSEQTRVNAAKNKTGVAPIIDVV---RSGYYKVLGKGK 116 (148)
T ss_dssp EETHHHHH-HTTTTTSSCTTTTEEEHHHHSTTC---SSSCCEEECCSC
T ss_pred EEHHHHHh-hhhcCcEEehhhhccccCCeEecc---ccCceEEecCCc
Confidence 99999985 346677788775 3 578888643 135699999874
No 7
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.86 E-value=7.4e-10 Score=89.99 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=62.2
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCC---CCC------eEE--ecccccCCCCCCCCCCCeeeeee
Q 028582 87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGG---QMP------LYR--RIPKLRGIAGGMHAGLPKYVPVN 155 (207)
Q Consensus 87 k~rKRvGRG~GSG~GKTsGRGhKGQksRsG~~~r~GFEGG---QtP------LyR--RlPK~RGF~ng~~~~~~~y~~VN 155 (207)
.++.|.=|| -.|||.|+.|+...+|..--.|..|| |-- -|. +||| +||+|.+ .++++|.+||
T Consensus 5 ~~k~rk~rG-----~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK-~GF~n~~-~~~~~~~~VN 77 (147)
T 3j21_L 5 RKKVRKLRG-----SHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK-RGFSRPP-EVQREVRVVN 77 (147)
T ss_dssp HHHHTTTTC-----CSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCC-CSCCCCT-TTCCCCCEEE
T ss_pred ccccccccC-----CCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCc-CCCCccc-cccceeEEEE
Confidence 344566787 56788888887554332223577788 411 122 7999 6998742 2357899999
Q ss_pred chhhhhhCCCCCCccCHHHHHHCCCCCCCCCC-----CCCCeEEeecCC
Q 028582 156 LKDIEAAGFLEGDEVSLETLKKKGLINPSGRE-----RKLPLKVQIMTF 199 (207)
Q Consensus 156 L~~L~~~r~d~~~~It~e~L~~~glv~~~g~~-----~~~~VKILa~~~ 199 (207)
|++|++ .++ +|++.+++...+.. ..++||||+.|-
T Consensus 78 L~~L~~-l~~--------~L~~~gli~~~~~~~vid~~~~GvKVLG~G~ 117 (147)
T 3j21_L 78 LKFIDE-HLD--------ELMQMGIAYEEGGKIIVDVTQFADKVLGTGK 117 (147)
T ss_dssp HHHHHH-TTT--------TTTTSCCCSSSSBSEEEEGGGGCCEEECCSC
T ss_pred HHHHHH-HHH--------HHHHcCcccccCCcceecccccCcEEecCCc
Confidence 999985 232 48899999653100 011399999875
No 8
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=98.75 E-value=3.5e-10 Score=92.12 Aligned_cols=105 Identities=21% Similarity=0.096 Sum_probs=66.1
Q ss_pred ccccccccCCC---CC-CCCccccCCCCCCCCCCCC--CCCcccCCCCCeEEecccccCCCCCCCC-CCCeeeeeechhh
Q 028582 87 KRGKRKGRGIA---AG-QGNSCGFGMRGQKSRSGPG--VRKGFEGGQMPLYRRIPKLRGIAGGMHA-GLPKYVPVNLKDI 159 (207)
Q Consensus 87 k~rKRvGRG~G---SG-~GKTsGRGhKGQksRsG~~--~r~GFEGGQtPLyRRlPK~RGF~ng~~~-~~~~y~~VNL~~L 159 (207)
.++.|.-||.- -| .||+.++||+|++.++|+. .+.+|+.. +|. .++| +||++.+.. ++..|++|||++|
T Consensus 5 ~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky-~p~--~fGK-~Gfr~~h~~~n~~~~~~VNLdkL 80 (149)
T 4a17_K 5 LKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKW-HPG--YYGK-LGMRTFHLKKNPLHCPVVNIDKL 80 (149)
T ss_dssp GSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHH-STT--CSSC-CSCCCSSCCCGGGCCCEEEGGGH
T ss_pred ccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeecc-CCC--cCCC-CCccCCCccCCcceeeEEEHHHH
Confidence 44557777742 22 4777888888888888865 45678877 888 6999 699874322 2456889999999
Q ss_pred hhhCCCCCCccCHHHHHH-CCCCCCCCCCCCCCeEEeecCC
Q 028582 160 EAAGFLEGDEVSLETLKK-KGLINPSGRERKLPLKVQIMTF 199 (207)
Q Consensus 160 ~~~r~d~~~~It~e~L~~-~glv~~~g~~~~~~VKILa~~~ 199 (207)
++ .+++...++.+.+.+ ..+|... ....||||+.|-
T Consensus 81 ~~-l~~~~~~~~~~~~~~~~~vId~~---~~g~~KvLG~G~ 117 (149)
T 4a17_K 81 WS-LVSDATRQKYAEDKKKVPVIDVT---KAGFFKVLGKGR 117 (149)
T ss_dssp HH-HSCHHHHHHHHHCCSSCCEEEHH---HHTCCEEECCSC
T ss_pred HH-HhhhhcchhhhhhcCCceEEEec---cCCeEEEecCCc
Confidence 75 344443444443221 1244310 123699998874
No 9
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.56 E-value=5.2e-09 Score=82.47 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeeeeechhhhhhCCCCCCccCH
Q 028582 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSL 172 (207)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~d~~~~It~ 172 (207)
.||||||+|| |||++ +++|.+|||++|++ .++++++||+
T Consensus 26 ~~Pl~rrlpK-rgF~~-----r~~~~~VnL~~L~~-~~~~g~~i~~ 64 (120)
T 3j21_P 26 GVKIWKDVAW-RLERP-----RRQRAEVNVSKINR-YANDGEMIVV 64 (120)
T ss_dssp CCSHHHHHHH-HHHSC-----TTSSEEEEHHHHTT-SSCTTCEEEE
T ss_pred CCcHHHHHHh-hcCCC-----CCcceeEEHHHHHH-HHhcCCEEEE
Confidence 5999999999 79974 57899999999985 4567777773
No 10
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=98.42 E-value=2e-08 Score=78.67 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=30.8
Q ss_pred CCCCeEEecccccCCCCCCCCCCCeeeeeechhhhhhCCCCCCcc
Q 028582 126 GQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEV 170 (207)
Q Consensus 126 GQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~d~~~~I 170 (207)
-|||||||+|| || | .++++|.+|||++|++ .++++++|
T Consensus 22 ~~~Pl~rRlPK-rG--~---~~~~~~~~VnL~~L~~-~~~~g~~i 59 (116)
T 1vq8_O 22 SGGAVWGDVAE-RL--E---KPRRTHAEVNLGRIER-YAQEDETV 59 (116)
T ss_dssp SSCHHHHHHHH-HH--T---SCTTTSEEEEHHHHHH-HCCTTSEE
T ss_pred cCCCHhhhccc-CC--C---CCCceeeeEeHHHHHH-HccCCCEE
Confidence 48999999999 69 2 3467899999999985 46777766
No 11
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=97.46 E-value=6.8e-06 Score=65.06 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCeEEecccccCCCCCCCCCCCeeeeeechhhhh
Q 028582 128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEA 161 (207)
Q Consensus 128 tPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~ 161 (207)
-|||||+|| |||.+ +.+|++|||++|++
T Consensus 22 apl~rrvpK-RgF~s-----r~~~~~VnLs~L~~ 49 (121)
T 3jyw_O 22 APFNKVVLK-ALFLS-----KINRPPVSVSRIAR 49 (121)
T ss_dssp CHHHHHHHH-TTTSC-----STTSCCBCHHHHHH
T ss_pred ChHHHHHHH-HHCCC-----CCccceEEHHHHHH
Confidence 589999999 79974 46899999999985
No 12
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=97.34 E-value=1.2e-05 Score=67.98 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=25.0
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeeeeechhhhh
Q 028582 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEA 161 (207)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~ 161 (207)
.-|||||||| |||.| +++|.+|||++|++
T Consensus 40 ~apl~rrlpK-RgF~s-----r~~y~~VNLs~L~~ 68 (188)
T 2zkr_o 40 NSTFNQVVLK-RLFMS-----RTNRPPLSLSRMIR 68 (188)
T ss_dssp CCHHHHHHHH-HHHSC-----TTTSCEEEHHHHHS
T ss_pred CCCHHHHHHH-hhCCC-----ccceeeeeHHHHHH
Confidence 3599999999 79975 56899999999984
No 13
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=95.98 E-value=0.0057 Score=49.91 Aligned_cols=27 Identities=15% Similarity=-0.067 Sum_probs=16.6
Q ss_pred cccccCCCCCCCC-CCCeeeeeechhhhh
Q 028582 134 IPKLRGIAGGMHA-GLPKYVPVNLKDIEA 161 (207)
Q Consensus 134 lPK~RGF~ng~~~-~~~~y~~VNL~~L~~ 161 (207)
+.| .||.+.+.. +.....+|||++|+.
T Consensus 53 fGK-~G~r~~h~~~n~~~~~~INldkL~~ 80 (149)
T 3o58_Y 53 FGK-VGMRYFHKQQAHFWKPVLNLDKLWT 80 (149)
T ss_dssp SSC-CSCCCCCCCCCCCCCCSTTTTHHHH
T ss_pred cCC-CCcccCcccccccccceEEHHHHHH
Confidence 567 488753222 122346899999974
No 14
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=95.17 E-value=0.002 Score=54.58 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.7
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeeeeechhhhh
Q 028582 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEA 161 (207)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~ 161 (207)
.-||++++|| |+|.+ +.+|++|||++|++
T Consensus 41 ~apf~r~V~K-RLf~s-----r~~r~pVnLsrL~r 69 (188)
T 3iz5_R 41 KSKFNAVILK-RLFMS-----KTNRPPLSMRRLSN 69 (188)
T ss_dssp SCHHHHHHHH-HHHSC-----TTTCCEEEHHHHHT
T ss_pred CChHHHHHHH-HHcCC-----ccccCcccHHHHHH
Confidence 4689999999 79963 56899999999985
No 15
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=94.94 E-value=0.0022 Score=54.24 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.7
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeeeeechhhhh
Q 028582 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEA 161 (207)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~ 161 (207)
.-||++++|| |+|.+ +.+|++|||++|++
T Consensus 41 ~apf~r~V~K-RLf~s-----r~~r~~VnLsrI~r 69 (186)
T 3izc_R 41 DAPFNKVVLK-ALFLS-----KINRPPVSVSRIAR 69 (186)
T ss_dssp CCHHHHHHHH-HHHSC-----TTTCCEEEHHHHHH
T ss_pred CChHHHHHHH-HHhCC-----CcccCcccHHHHHH
Confidence 4589999999 79963 56899999999985
No 16
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=94.91 E-value=0.0015 Score=54.94 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCCCeEEecccccCCCCCCCCCCCeeeeeechhhhh
Q 028582 126 GQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEA 161 (207)
Q Consensus 126 GQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~ 161 (207)
-.-||++++|| |+|.+ +.+|++|||++|++
T Consensus 41 t~apf~r~V~K-RLf~s-----r~nr~pVnLsrI~r 70 (181)
T 4a17_N 41 TDSKFNQNILK-RLSSS-----RLNKFPLSLSRIVK 70 (181)
T ss_dssp CCCHHHHHHHH-HHSCC-----GGGSCCEEHHHHHH
T ss_pred cCChHHHHHHH-HHcCC-----ccccCcccHHHHHH
Confidence 34699999999 79953 56899999999985
No 17
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=94.00 E-value=0.024 Score=45.94 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=35.4
Q ss_pred cccccccCCCCCCCCccccCCCCCC--CCCCCCCCCcccCCCCCeEEe--------cccccCCCCCCCC-CCCeeeeeec
Q 028582 88 RGKRKGRGIAAGQGNSCGFGMRGQK--SRSGPGVRKGFEGGQMPLYRR--------IPKLRGIAGGMHA-GLPKYVPVNL 156 (207)
Q Consensus 88 ~rKRvGRG~GSG~GKTsGRGhKGQk--sRsG~~~r~GFEGGQtPLyRR--------lPK~RGF~ng~~~-~~~~y~~VNL 156 (207)
++.|.=|| -.|+|.|.-|+. +|.| .|-.||+-=-+-. +.| .||+..+.. +.....+|||
T Consensus 6 kKtrK~RG-----~~s~G~G~~gkhR~h~GG----rG~AGg~~Hh~~~~~Ky~p~~fGK-~G~r~~h~~~n~~~~~~VNl 75 (144)
T 3iz5_O 6 KKNRKKRG-----HVSAGHGRIGKHRKHPGG----RGNAGGMHHHRILFDKYHPGYFGK-VGMRYFHRLSNRFHCPAVNV 75 (144)
T ss_dssp SSSCCSSS-----CSTTTTSCCCSSCSCCSC----CCSTTTSCCCEEEEETHHHHHTST-TCTTSCCCSSCTTSCEEEGG
T ss_pred cccccccC-----CCccCCCCCCCCCCCCCC----CccccCccceeEEEEeeCCCccCC-CCccCCCccccccccceEEH
Confidence 34455577 346777776642 2222 3666776322222 457 488753222 1234579999
Q ss_pred hhhhh
Q 028582 157 KDIEA 161 (207)
Q Consensus 157 ~~L~~ 161 (207)
++|++
T Consensus 76 ~kL~~ 80 (144)
T 3iz5_O 76 ERLWS 80 (144)
T ss_dssp GTSTT
T ss_pred HHHHH
Confidence 99974
No 18
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=67.78 E-value=6.7 Score=24.89 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=14.7
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCC
Q 028582 105 GFGMRGQKSRSGPGVRKGFEGGQM 128 (207)
Q Consensus 105 GRGhKGQksRsG~~~r~GFEGGQt 128 (207)
=||.||. |.| .|++|.|||.
T Consensus 17 lrgtkgk--rkg--arlwyvggqq 36 (37)
T 2bpa_3 17 LRGTKGK--RKG--ARLWYVGGQQ 36 (37)
T ss_dssp BCCSCCS--SCC--SCCCCSSSCC
T ss_pred ccccccc--ccc--ceEEEecccc
Confidence 4677873 444 6899999994
No 19
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=56.63 E-value=1 Score=36.24 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=20.5
Q ss_pred CccccCCCCCCCCCCCCCCCcccCCCCCeEEecccc
Q 028582 102 NSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 137 (207)
Q Consensus 102 KTsGRGhKGQksRsG~~~r~GFEGGQtPLyRRlPK~ 137 (207)
.|||.|+.|+...+|..-..|..|||...+..+.|+
T Consensus 15 ~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky 50 (149)
T 4a17_K 15 VSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKW 50 (149)
T ss_dssp SSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHH
T ss_pred CccCCCCCCCcCCCCCCCCCcccCCCcceEEeeecc
Confidence 466666666655433222356666666666666553
Done!