Query 028583
Match_columns 207
No_of_seqs 152 out of 198
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvr_A Transcription intermedi 95.6 0.003 1E-07 41.0 0.8 38 18-59 8-45 (50)
2 1fre_A Nuclear factor XNF7; zi 95.5 0.01 3.5E-07 37.1 3.0 36 18-58 5-41 (42)
3 2d8u_A Ubiquitin ligase TRIM63 95.3 0.0061 2.1E-07 41.2 1.7 39 17-59 9-48 (64)
4 3ddt_A E3 ubiquitin-protein li 95.3 0.0059 2E-07 39.4 1.4 40 16-59 6-46 (48)
5 2did_A Tripartite motif protei 94.9 0.012 4E-07 38.7 2.0 37 18-59 10-47 (53)
6 2yrg_A Tripartite motif-contai 93.8 0.031 1.1E-06 37.8 2.2 37 18-59 16-53 (59)
7 2csv_A Tripartite motif protei 93.6 0.02 6.9E-07 39.8 1.1 36 18-58 20-55 (72)
8 2dja_A Midline-2; tripartite m 93.3 0.019 6.6E-07 40.7 0.6 38 18-59 20-58 (84)
9 2jun_A Midline-1; B-BOX, TRIM, 91.5 0.044 1.5E-06 39.7 0.5 38 17-58 60-98 (101)
10 2egm_A Tripartite motif-contai 91.1 0.019 6.4E-07 38.7 -1.7 36 18-58 20-56 (57)
11 2w0t_A Lethal(3)malignant brai 90.0 0.059 2E-06 35.5 0.1 26 107-132 3-34 (43)
12 2das_A Zinc finger MYM-type pr 79.4 1.3 4.3E-05 31.2 2.7 27 106-132 16-52 (62)
13 2l8e_A Polyhomeotic-like prote 71.1 0.55 1.9E-05 31.4 -0.9 24 110-133 18-46 (49)
14 3nis_A E3 ubiquitin-protein li 64.5 3.9 0.00013 29.8 2.4 32 26-57 16-51 (82)
15 1lv3_A Hypothetical protein YA 64.3 0.73 2.5E-05 32.9 -1.5 29 110-138 9-42 (68)
16 3ny3_A E3 ubiquitin-protein li 46.0 13 0.00043 26.6 2.5 32 26-57 12-47 (75)
17 2hiy_A Hypothetical protein; C 45.2 10 0.00035 30.9 2.2 33 65-98 19-54 (183)
18 2jun_A Midline-1; B-BOX, TRIM, 38.1 8.7 0.0003 27.3 0.6 34 19-53 6-39 (101)
19 2yqp_A Probable ATP-dependent 34.3 15 0.00052 25.5 1.3 27 110-136 19-50 (60)
20 2yqq_A Zinc finger HIT domain- 26.9 19 0.00066 24.5 0.8 22 110-132 12-39 (56)
21 2fc7_A ZZZ3 protein; structure 21.2 48 0.0017 23.7 2.0 31 32-62 37-76 (82)
22 2dip_A Zinc finger SWIM domain 20.6 18 0.00063 26.9 -0.3 30 32-61 47-77 (98)
No 1
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.58 E-value=0.003 Score=41.02 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=30.1
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeEE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQI 59 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI 59 (207)
.|..|... .-++||.+|.. .+|..|....|++|+++-|
T Consensus 8 ~C~~H~~e---~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKHE---PLVLFCESCDT-LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTTC---BCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred cCcCCCCC---CEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence 58888442 37799999984 9999997778999877653
No 2
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=95.47 E-value=0.01 Score=37.07 Aligned_cols=36 Identities=28% Similarity=0.726 Sum_probs=28.9
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ 58 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 58 (207)
.|..|.. .-.+||.+|.. .+|..|.. ..|++|+++.
T Consensus 5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence 5888852 46799999984 99999965 6899998764
No 3
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.35 E-value=0.0061 Score=41.20 Aligned_cols=39 Identities=33% Similarity=0.803 Sum_probs=29.9
Q ss_pred cCCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583 17 TICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI 59 (207)
Q Consensus 17 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 59 (207)
..|..|... .-++||.+|.. .+|..|.. ..|++|+++-|
T Consensus 9 ~~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 48 (64)
T 2d8u_A 9 PMCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 48 (64)
T ss_dssp CCCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred CcCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence 359999542 36799999984 99999954 68999876653
No 4
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.26 E-value=0.0059 Score=39.41 Aligned_cols=40 Identities=33% Similarity=0.754 Sum_probs=31.0
Q ss_pred ccCCcCCCCCCCCCCceeeccCCCCccCCccc-CCCCCCCCeeEE
Q 028583 16 FTICPRHNDSPRNECNMYCLDCMSGAFCFYCR-SSRHKDHPVIQI 59 (207)
Q Consensus 16 F~~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI 59 (207)
...|..|.. ..-++||.+|. ..+|..|. ...|++|+++.|
T Consensus 6 ~~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence 356998863 13679999998 49999995 468999988764
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=94.91 E-value=0.012 Score=38.66 Aligned_cols=37 Identities=27% Similarity=0.870 Sum_probs=30.1
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI 59 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 59 (207)
.|..|. ..-.+||.+|.. .+|..|.. ..|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 599995 246799999984 99999965 78999987765
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.77 E-value=0.031 Score=37.81 Aligned_cols=37 Identities=22% Similarity=0.688 Sum_probs=30.3
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI 59 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 59 (207)
.|..|.. ...+||.++.. .+|..|.. ..|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 5999963 46799999984 89999965 78999988765
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=93.61 E-value=0.02 Score=39.76 Aligned_cols=36 Identities=25% Similarity=0.776 Sum_probs=28.9
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQ 58 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQ 58 (207)
.|..|. ..-++||.+|.. .+|..|....|++|+++-
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEE
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEec
Confidence 699994 246799999984 999999768899986654
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.28 E-value=0.019 Score=40.66 Aligned_cols=38 Identities=34% Similarity=0.820 Sum_probs=30.1
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI 59 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 59 (207)
.|..|... .-++||.+|.. .+|..|.. ..|++|+++-|
T Consensus 20 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 20 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred cCcCcCCc---cccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence 59999531 36799999984 99999965 78999987665
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.49 E-value=0.044 Score=39.72 Aligned_cols=38 Identities=37% Similarity=0.831 Sum_probs=29.7
Q ss_pred cCCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583 17 TICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ 58 (207)
Q Consensus 17 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 58 (207)
..|..|... ..++||.+|.. .+|..|.. ..|++|+++-
T Consensus 60 ~~C~~H~~e---~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 60 LMCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCCSSCSSS---CCCEEETTTTE-EECHHHHHHTTTSSSCBCC
T ss_pred CcCcCcCCC---cceEECCCCCC-ccchhcCCCCCcCCCCeec
Confidence 368888531 36799999984 99999965 7899998764
No 10
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.11 E-value=0.019 Score=38.71 Aligned_cols=36 Identities=36% Similarity=0.887 Sum_probs=28.7
Q ss_pred CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ 58 (207)
Q Consensus 18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 58 (207)
.|..|.. ...+||.+|.. .+|..|.. ..|++|+++.
T Consensus 20 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQE----ALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCC----BCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhCc----eeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 4998842 47799999984 89999964 6899998764
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=90.00 E-value=0.059 Score=35.54 Aligned_cols=26 Identities=35% Similarity=0.852 Sum_probs=18.9
Q ss_pred CCCCccccccccc-cCCC-----Ceeeeecce
Q 028583 107 KGVSHLCEICGRS-LLDP-----FRFCSLGCK 132 (207)
Q Consensus 107 k~~~~~C~~C~R~-L~d~-----~rFCSl~CK 132 (207)
++....||.|++. +... -||||++|-
T Consensus 3 ~~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 3 GSEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp SCCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CCceehhhhhcCcchhhhhccCCcceechhhh
Confidence 3445689999984 4443 489999994
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=79.38 E-value=1.3 Score=31.24 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=21.9
Q ss_pred CCCCCccccccccccCC----------CCeeeeecce
Q 028583 106 GKGVSHLCEICGRSLLD----------PFRFCSLGCK 132 (207)
Q Consensus 106 ~k~~~~~C~~C~R~L~d----------~~rFCSl~CK 132 (207)
.+....+|+.|.+.|+. +-.|||..|-
T Consensus 16 ~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 16 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp SSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred CCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence 55677899999999974 3469999996
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=71.10 E-value=0.55 Score=31.41 Aligned_cols=24 Identities=38% Similarity=0.786 Sum_probs=19.3
Q ss_pred CccccccccccCC-----CCeeeeeccee
Q 028583 110 SHLCEICGRSLLD-----PFRFCSLGCKL 133 (207)
Q Consensus 110 ~~~C~~C~R~L~d-----~~rFCSl~CKv 133 (207)
..+|+.|++.+.. +-+|||.+|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 4579999999974 25899999973
No 14
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=64.52 E-value=3.9 Score=29.83 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=23.7
Q ss_pred CCCCCceeeccCCCC---ccCCccc-CCCCCCCCee
Q 028583 26 PRNECNMYCLDCMSG---AFCFYCR-SSRHKDHPVI 57 (207)
Q Consensus 26 ~knE~N~FCldC~~~---~~C~~C~-~~~H~~Hrvl 57 (207)
.++|--..|.||..+ +||..|. ...|.+|++.
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~ 51 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVC 51 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEE
Confidence 457888999999776 5777773 4569998654
No 15
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=64.32 E-value=0.73 Score=32.95 Aligned_cols=29 Identities=34% Similarity=0.941 Sum_probs=22.5
Q ss_pred CccccccccccC----CCC-eeeeecceecceec
Q 028583 110 SHLCEICGRSLL----DPF-RFCSLGCKLEGIKK 138 (207)
Q Consensus 110 ~~~C~~C~R~L~----d~~-rFCSl~CKv~~~~~ 138 (207)
...|-+|++... -+| .|||-.||...+.+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~ 42 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 42 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHH
Confidence 457999999985 234 69999999866554
No 16
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=45.96 E-value=13 Score=26.59 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=23.7
Q ss_pred CCCCCceeeccCCCC---ccCCccc-CCCCCCCCee
Q 028583 26 PRNECNMYCLDCMSG---AFCFYCR-SSRHKDHPVI 57 (207)
Q Consensus 26 ~knE~N~FCldC~~~---~~C~~C~-~~~H~~Hrvl 57 (207)
.++|--..|++|..+ ++|..|. ...|.+|++.
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~ 47 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYR 47 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEE
Confidence 457888999999866 5666663 4579998754
No 17
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=45.25 E-value=10 Score=30.87 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=25.7
Q ss_pred cceeehhhHHhh---hcccceeeEEECCeEEEEeeCC
Q 028583 65 HDVVRVAEIQKA---LDISEVQTYVINSARVLFLNER 98 (207)
Q Consensus 65 hdVVRv~diqkl---lDiS~IQtYviNsakVVfLn~R 98 (207)
++-|...|+..+ +-..+|+|| |||.-|||--..
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 345677888776 678999999 799999997543
No 18
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=38.06 E-value=8.7 Score=27.26 Aligned_cols=34 Identities=21% Similarity=0.647 Sum_probs=23.1
Q ss_pred CcCCCCCCCCCCceeeccCCCCccCCcccCCCCCC
Q 028583 19 CPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKD 53 (207)
Q Consensus 19 C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~ 53 (207)
|..=.+..+.+...+|++|.. .||..|+...|..
T Consensus 6 C~~C~~~~~~~av~~C~~C~~-~~C~~Cl~~~h~~ 39 (101)
T 2jun_A 6 CQFCDQDPAQDAVKTCVTCEV-SYCDECLKATHPN 39 (101)
T ss_dssp CTTCCSSSCCBCCEEETTTTE-EECHHHHHHHSCS
T ss_pred CcCCCCCCCCCceEECCcCCh-HHhHHHCHHHhcc
Confidence 444433335677899999985 9999994333763
No 19
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.30 E-value=15 Score=25.55 Aligned_cols=27 Identities=37% Similarity=0.771 Sum_probs=20.1
Q ss_pred Ccccccccccc---CC--CCeeeeecceecce
Q 028583 110 SHLCEICGRSL---LD--PFRFCSLGCKLEGI 136 (207)
Q Consensus 110 ~~~C~~C~R~L---~d--~~rFCSl~CKv~~~ 136 (207)
.+.|-+|+|-= -| .-+-|||.||-..+
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l 50 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHL 50 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHH
Confidence 45699999854 34 46899999996554
No 20
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.93 E-value=19 Score=24.46 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=16.1
Q ss_pred CccccccccccCC------CCeeeeecce
Q 028583 110 SHLCEICGRSLLD------PFRFCSLGCK 132 (207)
Q Consensus 110 ~~~C~~C~R~L~d------~~rFCSl~CK 132 (207)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 446999988 321 3689999996
No 21
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.15 E-value=48 Score=23.66 Aligned_cols=31 Identities=39% Similarity=0.687 Sum_probs=22.1
Q ss_pred eeeccCCC---CccCCcccC-----CCC-CCCCeeEEEec
Q 028583 32 MYCLDCMS---GAFCFYCRS-----SRH-KDHPVIQIRRS 62 (207)
Q Consensus 32 ~FCldC~~---~~~C~~C~~-----~~H-~~HrvlQIRRs 62 (207)
+-|++|.. --||..|.. ..| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 57999975 469999942 245 67888887653
No 22
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.60 E-value=18 Score=26.85 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=21.6
Q ss_pred eeeccCCCCccCCccc-CCCCCCCCeeEEEe
Q 028583 32 MYCLDCMSGAFCFYCR-SSRHKDHPVIQIRR 61 (207)
Q Consensus 32 ~FCldC~~~~~C~~C~-~~~H~~HrvlQIRR 61 (207)
.-|+.|..--||..|. ...|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 5688887657899993 44577888777644
Done!