BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028584
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAASSA 206
E CA+CLE FK D L PC H FH +CL+ WL CP C M +L A S
Sbjct: 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQLSG 70
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
EC +C E + +G+++ LPC H FH C++PWL + +CP CR +
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSL 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
+C ICL + G+ + LPC H FH C+ WL TN CP CR+ I
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCR 195
EQ C +C+ F+ L LPC H FHA+C+ WL N CP CR
Sbjct: 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICR 67
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 152 ECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNAHNCPCCRMQIL 199
ECA+CL + G+ LP C H FHA C+ WL +++ CP CR+ ++
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV 54
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAASSA 206
++EEC IC++ G + LPCAH F +C+ W + NCP CR+Q+ SS
Sbjct: 14 DEEECCICMD----GRADLILPCAHSFCQKCIDKW-SDRHRNCPICRLQMTGANESSG 66
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201
C IC + GD LPC H FH C+ WL + CP CR P
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPPP 90
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAASSAD 207
C ICL+ K +T+ C HRF A C++ L + CP CR +++ + D
Sbjct: 57 CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPD 109
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199
C ICL+ K +T+ C HRF A C++ L + CP CR +++
Sbjct: 56 CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 100
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAASSAD 207
C ICL+ K +T+ C HRF A C++ L + CP CR +++ + D
Sbjct: 37 CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPD 89
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAAS 204
+C IC E F V L CAH F + C+ W+ CP CR I S
Sbjct: 55 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKTYS 103
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAAS 204
+C IC E F V L CAH F + C+ W+ CP CR I S
Sbjct: 55 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKTYS 103
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCP 192
EC ICL + V PC HRF C++ + H CP
Sbjct: 8 ECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCP 45
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCP 192
EC ICL + V PC HRF C++ + H CP
Sbjct: 27 ECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCP 64
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAAS 204
+C IC E F V L CAH F + C+ W+ CP CR I S
Sbjct: 66 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKTYS 114
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W ++ CP CR +I
Sbjct: 29 CKICAENDK--DVKIE-PCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W + CP CR +I
Sbjct: 30 CKICAENDK--DVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W + CP CR +I
Sbjct: 27 CKICAENDK--DVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
E C ICLE + + LPC H F C+ W+ N CP C++ +
Sbjct: 6 ERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPV 50
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.4 bits (67), Expect = 0.68, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 153 CAICLERF----KVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC++ + + G +V C H F ++CL L NA+ CP CR +I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKI 54
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W ++ CP CR +I
Sbjct: 341 CKICAENDK--DVKIE-PCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 153 CAICLERF----KVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC++ + + G +V C H F ++CL L NA+ CP CR +I
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 66
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 152 ECAICLERF----KVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC++ + + G +V C H F ++CL L NA+ CP CR +I
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 61
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCP 192
EC ICL + V PC HRF C++ + H CP
Sbjct: 20 ECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 150 QEECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATNAHNCPCC 194
Q+ C ICLE + H LPC H H C L + CP C
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLC 49
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCP 192
EC ICL + V PC HRF C++ + H CP
Sbjct: 20 ECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 152 ECAICLERF----KVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC++ + + G +V C H F ++CL L NA+ CP CR +I
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 58
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 152 ECAICLERF----KVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC++ + + G +V C H F ++CL L NA+ CP CR +I
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 123
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W + CP CR +I
Sbjct: 337 CKICAENDK--DVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W + CP CR +I
Sbjct: 337 CKICAENDK--DVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W + CP CR +I
Sbjct: 335 CKICAENDK--DVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C IC E K D + PC H CL W + CP CR +I
Sbjct: 335 CKICAENDK--DVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 153 CAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATNAHNCPCC 194
C ICLE + H LPC H H C L + CP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLC 49
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 19/69 (27%)
Query: 146 KACEQEECAICLERFKVGDTLVHL---------------PCAHRFHARCLLPWLATNAHN 190
K +E+C IC+E+ V + C+H FH CLL +
Sbjct: 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD 80
Query: 191 ----CPCCR 195
CP C+
Sbjct: 81 GSLQCPSCK 89
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198
C +C F T++ C H F C++ +L T+ + CP C +Q+
Sbjct: 18 CVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKY-CPICDVQV 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,429,677
Number of Sequences: 62578
Number of extensions: 115075
Number of successful extensions: 270
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 42
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)