Query 028584
Match_columns 207
No_of_seqs 220 out of 2207
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 3.6E-14 7.7E-19 126.1 5.2 73 118-203 210-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.6E-14 5.5E-19 91.1 2.5 43 152-195 2-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 1.6E-11 3.4E-16 86.7 3.6 45 150-195 19-73 (73)
4 COG5540 RING-finger-containing 99.2 2.1E-11 4.6E-16 105.9 3.8 55 147-201 320-374 (374)
5 PHA02929 N1R/p28-like protein; 99.0 1.4E-10 3E-15 98.9 4.1 52 148-200 172-228 (238)
6 KOG0317 Predicted E3 ubiquitin 99.0 3.7E-10 8E-15 97.6 3.7 50 148-201 237-286 (293)
7 COG5243 HRD1 HRD ubiquitin lig 99.0 3.6E-10 7.9E-15 100.6 3.6 52 147-199 284-345 (491)
8 PLN03208 E3 ubiquitin-protein 98.9 6.5E-10 1.4E-14 91.7 4.0 51 147-200 15-80 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 5.3E-10 1.2E-14 73.0 2.6 46 150-199 2-48 (50)
10 PF15227 zf-C3HC4_4: zinc fing 98.9 7.9E-10 1.7E-14 69.9 2.9 39 153-194 1-42 (42)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.1E-09 2.3E-14 68.0 3.2 39 153-194 1-39 (39)
12 cd00162 RING RING-finger (Real 98.9 1.6E-09 3.6E-14 67.3 4.0 45 152-198 1-45 (45)
13 PF12861 zf-Apc11: Anaphase-pr 98.8 2.4E-09 5.1E-14 77.4 3.7 59 142-200 13-83 (85)
14 KOG0823 Predicted E3 ubiquitin 98.8 2.2E-09 4.9E-14 90.2 3.5 51 148-201 45-97 (230)
15 KOG0320 Predicted E3 ubiquitin 98.8 5.3E-09 1.1E-13 84.9 3.7 50 149-200 130-179 (187)
16 PF00097 zf-C3HC4: Zinc finger 98.7 9.7E-09 2.1E-13 63.9 3.5 40 153-194 1-41 (41)
17 PF14634 zf-RING_5: zinc-RING 98.7 1.7E-08 3.7E-13 64.2 3.1 44 152-196 1-44 (44)
18 smart00504 Ubox Modified RING 98.7 2.8E-08 6.1E-13 67.1 4.3 45 151-199 2-46 (63)
19 PHA02926 zinc finger-like prot 98.7 1.6E-08 3.4E-13 84.9 3.6 54 147-200 167-231 (242)
20 smart00184 RING Ring finger. E 98.6 2.9E-08 6.4E-13 59.4 3.4 39 153-194 1-39 (39)
21 KOG0802 E3 ubiquitin ligase [P 98.6 1.2E-08 2.6E-13 96.5 2.2 52 147-199 288-341 (543)
22 TIGR00599 rad18 DNA repair pro 98.5 4.8E-08 1E-12 88.9 3.5 49 148-200 24-72 (397)
23 COG5194 APC11 Component of SCF 98.5 1.1E-07 2.3E-12 67.7 2.6 51 150-201 20-83 (88)
24 KOG2930 SCF ubiquitin ligase, 98.4 1.2E-07 2.7E-12 70.5 2.7 50 149-199 45-108 (114)
25 PF13445 zf-RING_UBOX: RING-ty 98.4 2E-07 4.4E-12 59.2 2.8 39 153-192 1-43 (43)
26 KOG0287 Postreplication repair 98.4 1.3E-07 2.8E-12 83.6 1.7 49 149-201 22-70 (442)
27 COG5574 PEX10 RING-finger-cont 98.3 2.6E-07 5.7E-12 79.2 2.4 51 149-202 214-265 (271)
28 KOG0828 Predicted E3 ubiquitin 98.2 6.8E-07 1.5E-11 82.4 2.8 54 147-200 568-635 (636)
29 PF04564 U-box: U-box domain; 98.2 1.4E-06 3E-11 61.3 2.7 49 149-200 3-51 (73)
30 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.7E-11 76.3 3.8 51 150-200 3-55 (309)
31 COG5432 RAD18 RING-finger-cont 98.1 9.9E-07 2.1E-11 76.8 2.0 48 149-200 24-71 (391)
32 smart00744 RINGv The RING-vari 98.1 2.4E-06 5.2E-11 55.7 3.3 43 152-195 1-49 (49)
33 KOG2164 Predicted E3 ubiquitin 98.1 1.2E-06 2.7E-11 81.1 2.5 48 150-200 186-237 (513)
34 KOG2177 Predicted E3 ubiquitin 98.1 1E-06 2.3E-11 73.9 1.8 45 147-195 10-54 (386)
35 KOG1493 Anaphase-promoting com 98.1 5.1E-07 1.1E-11 63.7 -0.2 56 143-199 14-81 (84)
36 KOG0311 Predicted E3 ubiquitin 98.1 6.9E-07 1.5E-11 79.4 -0.6 58 148-207 41-98 (381)
37 COG5219 Uncharacterized conser 98.0 1.5E-06 3.2E-11 85.3 1.4 50 147-199 1466-1523(1525)
38 PF11793 FANCL_C: FANCL C-term 98.0 8.2E-07 1.8E-11 62.1 -0.2 50 150-199 2-66 (70)
39 KOG1734 Predicted RING-contain 98.0 1E-06 2.2E-11 75.9 0.3 54 148-201 222-283 (328)
40 KOG0804 Cytoplasmic Zn-finger 97.9 4.1E-06 8.9E-11 76.5 1.3 50 147-199 172-222 (493)
41 KOG0824 Predicted E3 ubiquitin 97.9 6.7E-06 1.5E-10 71.8 1.9 48 150-200 7-54 (324)
42 KOG4265 Predicted E3 ubiquitin 97.8 9.3E-06 2E-10 72.4 2.7 49 148-200 288-337 (349)
43 KOG3970 Predicted E3 ubiquitin 97.7 2E-05 4.4E-10 66.5 2.6 62 140-202 40-108 (299)
44 KOG0827 Predicted E3 ubiquitin 97.7 1.8E-05 4E-10 71.3 1.9 48 151-198 5-55 (465)
45 KOG4172 Predicted E3 ubiquitin 97.6 1.4E-05 3E-10 53.1 -0.0 46 151-199 8-54 (62)
46 KOG1039 Predicted E3 ubiquitin 97.4 6.2E-05 1.3E-09 67.6 2.0 52 148-199 159-221 (344)
47 KOG0825 PHD Zn-finger protein 97.4 4.3E-05 9.2E-10 74.1 0.3 53 147-200 120-172 (1134)
48 KOG0978 E3 ubiquitin ligase in 97.4 5.8E-05 1.3E-09 72.9 0.9 50 149-201 642-691 (698)
49 PF14835 zf-RING_6: zf-RING of 97.3 4E-05 8.7E-10 52.6 -0.4 45 150-199 7-51 (65)
50 KOG4159 Predicted E3 ubiquitin 97.2 0.00016 3.4E-09 66.2 2.1 51 148-202 82-132 (398)
51 KOG1785 Tyrosine kinase negati 97.2 0.00012 2.7E-09 66.4 1.2 49 151-202 370-419 (563)
52 KOG4445 Uncharacterized conser 97.2 0.00013 2.8E-09 64.0 0.9 52 149-200 114-187 (368)
53 KOG1645 RING-finger-containing 97.2 0.00031 6.7E-09 63.9 3.2 47 150-196 4-53 (463)
54 KOG2660 Locus-specific chromos 97.0 0.00013 2.9E-09 64.5 -0.2 52 146-200 11-62 (331)
55 KOG0297 TNF receptor-associate 96.9 0.00046 1E-08 63.2 2.3 51 147-201 18-69 (391)
56 KOG1941 Acetylcholine receptor 96.9 0.00032 7E-09 63.5 1.2 50 147-196 362-413 (518)
57 KOG2879 Predicted E3 ubiquitin 96.9 0.0012 2.7E-08 57.2 4.2 51 147-199 236-287 (298)
58 PF11789 zf-Nse: Zinc-finger o 96.7 0.0011 2.4E-08 44.5 2.4 43 149-193 10-53 (57)
59 KOG4692 Predicted E3 ubiquitin 96.6 0.0011 2.4E-08 59.5 2.1 49 147-199 419-467 (489)
60 PF14570 zf-RING_4: RING/Ubox 96.4 0.0014 3E-08 42.6 1.0 45 153-198 1-47 (48)
61 COG5152 Uncharacterized conser 96.4 0.0012 2.6E-08 55.0 0.8 44 151-198 197-240 (259)
62 KOG1428 Inhibitor of type V ad 96.2 0.0038 8.2E-08 64.5 3.1 53 147-199 3483-3544(3738)
63 PF10367 Vps39_2: Vacuolar sor 96.1 0.0026 5.5E-08 46.9 1.1 34 147-181 75-108 (109)
64 KOG1571 Predicted E3 ubiquitin 95.9 0.0097 2.1E-07 53.5 4.4 47 147-200 302-348 (355)
65 COG5222 Uncharacterized conser 95.9 0.0053 1.1E-07 54.1 2.5 43 151-196 275-318 (427)
66 PF12906 RINGv: RING-variant d 95.8 0.0049 1.1E-07 39.7 1.5 41 153-194 1-47 (47)
67 KOG1814 Predicted E3 ubiquitin 95.8 0.0071 1.5E-07 55.2 2.9 48 149-196 183-237 (445)
68 KOG1813 Predicted E3 ubiquitin 95.7 0.0041 8.8E-08 54.6 1.0 45 151-199 242-286 (313)
69 KOG1002 Nucleotide excision re 95.6 0.0055 1.2E-07 57.7 1.6 51 146-199 532-586 (791)
70 KOG1952 Transcription factor N 95.6 0.0063 1.4E-07 59.9 1.8 50 147-196 188-244 (950)
71 PF05883 Baculo_RING: Baculovi 95.5 0.0072 1.6E-07 47.4 1.8 37 150-186 26-68 (134)
72 KOG0801 Predicted E3 ubiquitin 95.3 0.005 1.1E-07 49.8 0.3 29 149-177 176-204 (205)
73 PHA02862 5L protein; Provision 95.2 0.016 3.4E-07 46.0 2.8 45 151-199 3-53 (156)
74 KOG4185 Predicted E3 ubiquitin 95.2 0.012 2.7E-07 51.3 2.2 48 151-198 4-54 (296)
75 PHA02825 LAP/PHD finger-like p 94.9 0.023 5E-07 45.7 3.0 48 148-199 6-59 (162)
76 KOG4275 Predicted E3 ubiquitin 94.7 0.0054 1.2E-07 53.8 -1.2 42 150-199 300-342 (350)
77 KOG0826 Predicted E3 ubiquitin 94.5 0.026 5.6E-07 50.3 2.5 46 147-195 297-342 (357)
78 COG5175 MOT2 Transcriptional r 94.5 0.025 5.3E-07 50.8 2.3 53 147-199 11-64 (480)
79 PF14447 Prok-RING_4: Prokaryo 94.5 0.024 5.3E-07 37.7 1.7 44 151-200 8-51 (55)
80 KOG3268 Predicted E3 ubiquitin 94.2 0.032 7E-07 45.9 2.3 34 168-201 187-230 (234)
81 PF04641 Rtf2: Rtf2 RING-finge 94.2 0.051 1.1E-06 47.0 3.7 50 148-199 111-161 (260)
82 KOG3039 Uncharacterized conser 94.1 0.05 1.1E-06 46.9 3.3 51 149-200 220-271 (303)
83 PF08746 zf-RING-like: RING-li 94.0 0.024 5.2E-07 35.8 0.9 42 153-194 1-43 (43)
84 COG5236 Uncharacterized conser 93.9 0.059 1.3E-06 48.6 3.6 48 148-199 59-108 (493)
85 PHA03096 p28-like protein; Pro 93.8 0.033 7.1E-07 49.0 1.8 45 151-195 179-230 (284)
86 KOG2114 Vacuolar assembly/sort 93.5 0.067 1.4E-06 53.0 3.4 42 151-198 841-882 (933)
87 KOG2817 Predicted E3 ubiquitin 93.2 0.066 1.4E-06 48.8 2.7 51 149-199 333-385 (394)
88 KOG1001 Helicase-like transcri 92.7 0.045 9.8E-07 53.5 0.9 46 151-200 455-501 (674)
89 KOG1940 Zn-finger protein [Gen 92.6 0.063 1.4E-06 47.0 1.7 47 149-196 157-204 (276)
90 KOG3002 Zn finger protein [Gen 92.6 0.07 1.5E-06 47.3 2.0 44 148-199 46-91 (299)
91 PF05290 Baculo_IE-1: Baculovi 92.4 0.13 2.7E-06 40.4 2.9 51 149-202 79-135 (140)
92 PF07800 DUF1644: Protein of u 92.3 0.13 2.8E-06 41.5 2.9 34 149-185 1-47 (162)
93 COG5220 TFB3 Cdk activating ki 92.1 0.089 1.9E-06 45.2 1.9 47 149-195 9-60 (314)
94 KOG0827 Predicted E3 ubiquitin 91.0 0.015 3.3E-07 52.8 -4.0 51 149-200 195-246 (465)
95 PF14446 Prok-RING_1: Prokaryo 90.1 0.33 7.2E-06 32.2 2.7 33 150-182 5-38 (54)
96 KOG2932 E3 ubiquitin ligase in 90.0 0.23 4.9E-06 44.2 2.5 45 150-199 90-134 (389)
97 KOG2034 Vacuolar sorting prote 89.5 0.19 4.2E-06 50.0 1.7 38 147-185 814-851 (911)
98 PF10272 Tmpp129: Putative tra 89.2 0.25 5.5E-06 44.8 2.2 29 171-199 311-351 (358)
99 KOG1100 Predicted E3 ubiquitin 88.0 0.28 6E-06 41.3 1.5 39 153-199 161-200 (207)
100 KOG3161 Predicted E3 ubiquitin 87.9 0.2 4.3E-06 48.5 0.7 40 150-192 11-51 (861)
101 KOG0309 Conserved WD40 repeat- 87.6 0.34 7.3E-06 47.8 2.0 26 167-193 1044-1069(1081)
102 KOG3053 Uncharacterized conser 86.6 0.31 6.7E-06 42.3 1.1 51 149-199 19-82 (293)
103 KOG0298 DEAD box-containing he 86.5 0.24 5.3E-06 51.2 0.5 47 148-197 1151-1197(1394)
104 KOG1812 Predicted E3 ubiquitin 86.4 0.28 6E-06 45.0 0.7 39 149-187 145-184 (384)
105 KOG4362 Transcriptional regula 85.1 0.24 5.1E-06 48.3 -0.4 46 150-198 21-68 (684)
106 KOG1609 Protein involved in mR 84.8 0.67 1.5E-05 40.2 2.4 51 149-199 77-134 (323)
107 PF03854 zf-P11: P-11 zinc fin 84.7 0.3 6.5E-06 31.6 0.1 43 152-200 4-47 (50)
108 COG5183 SSM4 Protein involved 83.3 0.77 1.7E-05 45.7 2.2 50 149-199 11-66 (1175)
109 COG5109 Uncharacterized conser 83.2 1.3 2.9E-05 39.5 3.5 48 149-196 335-384 (396)
110 KOG3899 Uncharacterized conser 80.6 0.97 2.1E-05 40.0 1.7 29 171-199 325-365 (381)
111 KOG3842 Adaptor protein Pellin 80.0 5.3 0.00012 35.9 6.1 116 82-199 275-414 (429)
112 KOG0269 WD40 repeat-containing 78.3 3.7 7.9E-05 40.7 4.9 44 147-193 776-820 (839)
113 KOG0825 PHD Zn-finger protein 78.1 1 2.2E-05 44.7 1.1 54 146-199 92-154 (1134)
114 smart00249 PHD PHD zinc finger 74.3 1.1 2.3E-05 27.1 0.1 30 153-183 2-32 (47)
115 KOG1812 Predicted E3 ubiquitin 71.1 1.8 4E-05 39.6 0.9 44 150-194 306-351 (384)
116 KOG1815 Predicted E3 ubiquitin 70.8 2.4 5.2E-05 39.5 1.6 37 149-187 69-105 (444)
117 smart00132 LIM Zinc-binding do 70.2 4.2 9.2E-05 23.5 2.1 36 153-198 2-37 (39)
118 PF06906 DUF1272: Protein of u 70.1 6.4 0.00014 26.3 3.1 48 151-202 6-55 (57)
119 KOG1829 Uncharacterized conser 66.2 2.2 4.7E-05 41.2 0.4 23 168-194 534-556 (580)
120 PF02891 zf-MIZ: MIZ/SP-RING z 65.1 6.7 0.00014 25.3 2.4 44 151-197 3-50 (50)
121 KOG3579 Predicted E3 ubiquitin 64.1 4.2 9.2E-05 35.9 1.7 40 148-188 266-307 (352)
122 PF07975 C1_4: TFIIH C1-like d 63.6 5.9 0.00013 25.9 1.9 42 153-195 2-50 (51)
123 KOG4718 Non-SMC (structural ma 63.3 3.5 7.6E-05 34.9 1.0 48 148-198 179-226 (235)
124 PF00412 LIM: LIM domain; Int 60.5 5.5 0.00012 25.5 1.4 38 153-200 1-38 (58)
125 KOG0802 E3 ubiquitin ligase [P 59.3 6.3 0.00014 37.6 2.1 47 147-201 476-522 (543)
126 KOG2068 MOT2 transcription fac 58.1 8.9 0.00019 34.5 2.7 48 151-200 250-299 (327)
127 PF07191 zinc-ribbons_6: zinc- 56.7 0.86 1.9E-05 31.9 -3.1 40 151-199 2-41 (70)
128 KOG2066 Vacuolar assembly/sort 56.6 4.9 0.00011 40.0 0.9 46 148-195 782-831 (846)
129 PF04710 Pellino: Pellino; In 56.4 3.7 8E-05 37.8 0.0 51 149-199 327-401 (416)
130 KOG2807 RNA polymerase II tran 56.0 11 0.00023 34.1 2.8 46 150-196 330-375 (378)
131 PF00628 PHD: PHD-finger; Int 55.0 6.9 0.00015 24.6 1.1 43 153-195 2-49 (51)
132 PF01363 FYVE: FYVE zinc finge 54.2 7.4 0.00016 26.2 1.2 37 148-184 7-44 (69)
133 TIGR00622 ssl1 transcription f 54.0 14 0.0003 28.2 2.8 44 151-195 56-110 (112)
134 KOG3005 GIY-YIG type nuclease 52.5 9.1 0.0002 33.5 1.8 49 149-197 181-241 (276)
135 PF06844 DUF1244: Protein of u 52.4 9 0.0002 26.5 1.4 13 174-186 11-23 (68)
136 COG3813 Uncharacterized protei 49.6 17 0.00036 25.7 2.4 48 152-202 7-55 (84)
137 PF13901 DUF4206: Domain of un 48.8 12 0.00027 31.1 2.0 38 151-195 153-196 (202)
138 KOG3039 Uncharacterized conser 46.7 14 0.0003 32.2 2.0 35 149-186 42-76 (303)
139 PF14569 zf-UDP: Zinc-binding 46.6 24 0.00051 25.2 2.8 51 149-199 8-62 (80)
140 KOG0956 PHD finger protein AF1 45.3 7.4 0.00016 38.4 0.1 50 149-198 116-181 (900)
141 COG4847 Uncharacterized protei 44.8 26 0.00056 26.0 2.9 35 151-186 7-41 (103)
142 PF10497 zf-4CXXC_R1: Zinc-fin 43.5 20 0.00044 26.8 2.2 25 172-196 37-69 (105)
143 KOG4185 Predicted E3 ubiquitin 42.0 4.1 9E-05 35.4 -2.0 49 149-197 206-265 (296)
144 PF04216 FdhE: Protein involve 42.0 3.7 8E-05 35.9 -2.3 47 148-196 170-219 (290)
145 KOG3799 Rab3 effector RIM1 and 40.9 6 0.00013 31.3 -1.0 49 148-196 63-115 (169)
146 KOG2071 mRNA cleavage and poly 38.9 17 0.00037 35.1 1.5 37 148-184 511-557 (579)
147 KOG3113 Uncharacterized conser 38.7 32 0.0007 30.0 3.0 49 149-200 110-159 (293)
148 PLN02189 cellulose synthase 37.6 34 0.00073 35.4 3.4 51 149-199 33-87 (1040)
149 KOG1815 Predicted E3 ubiquitin 36.7 11 0.00023 35.1 -0.2 42 147-188 223-269 (444)
150 cd00065 FYVE FYVE domain; Zinc 36.5 22 0.00049 22.7 1.4 35 151-185 3-38 (57)
151 PF09943 DUF2175: Uncharacteri 35.2 36 0.00077 25.5 2.4 33 152-185 4-36 (101)
152 PF14353 CpXC: CpXC protein 34.8 42 0.0009 25.4 2.9 47 151-200 2-50 (128)
153 KOG0824 Predicted E3 ubiquitin 34.6 15 0.00032 32.8 0.3 47 149-198 104-150 (324)
154 PLN02436 cellulose synthase A 34.2 41 0.00089 35.0 3.4 50 150-199 36-89 (1094)
155 KOG4080 Mitochondrial ribosoma 33.8 30 0.00065 28.2 1.9 62 112-183 54-116 (176)
156 KOG4218 Nuclear hormone recept 32.6 37 0.00081 31.0 2.5 25 146-171 11-35 (475)
157 smart00064 FYVE Protein presen 32.6 31 0.00067 23.0 1.6 36 150-185 10-46 (68)
158 PF06937 EURL: EURL protein; 30.4 43 0.00093 29.4 2.5 45 149-193 29-75 (285)
159 PF13719 zinc_ribbon_5: zinc-r 29.5 33 0.00071 20.5 1.2 13 152-164 4-16 (37)
160 KOG1729 FYVE finger containing 27.4 14 0.00029 32.8 -1.1 37 152-188 216-252 (288)
161 COG3492 Uncharacterized protei 26.5 35 0.00076 25.2 1.1 13 174-186 42-54 (104)
162 PF04423 Rad50_zn_hook: Rad50 26.2 23 0.00049 22.9 0.0 10 190-199 22-31 (54)
163 PF13771 zf-HC5HC2H: PHD-like 25.8 46 0.00099 23.3 1.6 33 150-182 36-68 (90)
164 PF13832 zf-HC5HC2H_2: PHD-zin 24.9 47 0.001 24.3 1.6 32 150-183 55-88 (110)
165 KOG2041 WD40 repeat protein [G 24.8 1.3E+02 0.0028 30.5 4.8 48 147-199 1128-1185(1189)
166 smart00647 IBR In Between Ring 24.6 23 0.00049 22.9 -0.2 19 165-183 39-58 (64)
167 PF13240 zinc_ribbon_2: zinc-r 24.1 11 0.00023 20.4 -1.5 6 190-195 15-20 (23)
168 KOG1245 Chromatin remodeling c 24.0 27 0.00058 37.4 0.1 51 148-198 1106-1159(1404)
169 PRK03564 formate dehydrogenase 23.9 36 0.00079 30.4 0.9 45 149-196 186-234 (309)
170 PF07649 C1_3: C1-like domain; 23.3 71 0.0015 17.9 1.8 29 152-180 2-30 (30)
171 PLN02638 cellulose synthase A 23.3 91 0.002 32.6 3.7 51 149-199 16-70 (1079)
172 PF02318 FYVE_2: FYVE-type zin 23.2 48 0.0011 24.9 1.4 45 149-195 53-101 (118)
173 cd00350 rubredoxin_like Rubred 22.3 72 0.0016 18.5 1.7 7 190-196 19-25 (33)
174 COG5216 Uncharacterized conser 22.1 37 0.0008 23.0 0.4 33 163-196 17-52 (67)
175 COG2816 NPY1 NTP pyrophosphohy 22.1 29 0.00062 30.6 -0.1 33 171-203 109-144 (279)
176 TIGR01562 FdhE formate dehydro 21.6 22 0.00047 31.7 -1.0 46 149-196 183-232 (305)
177 PLN02915 cellulose synthase A 21.3 95 0.0021 32.3 3.3 51 149-199 14-68 (1044)
178 PF10571 UPF0547: Uncharacteri 21.2 30 0.00064 19.3 -0.1 8 153-160 3-10 (26)
179 PF14311 DUF4379: Domain of un 20.6 60 0.0013 20.9 1.3 22 171-194 34-55 (55)
180 PLN02195 cellulose synthase A 20.5 1.2E+02 0.0025 31.4 3.8 50 150-199 6-59 (977)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.6e-14 Score=126.11 Aligned_cols=73 Identities=34% Similarity=0.796 Sum_probs=58.7
Q ss_pred hhhccccceeecccCCCCcccccccccccccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccC
Q 028584 118 NKSTVLHTQVFGSKKSGSKRFSWSKLSWKACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQ 197 (207)
Q Consensus 118 ~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~ 197 (207)
+.++++|..+|....... ....|+||+|+|..+++++.|||.|.||..||++||......||+|+.+
T Consensus 210 ~~l~~~p~~~f~~~~~~~-------------~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~d 276 (348)
T KOG4628|consen 210 RLLKKLPVRTFTKGDDED-------------ATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRD 276 (348)
T ss_pred HHHhhCCcEEeccccccC-------------CCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCc
Confidence 346677777776654332 1258999999999999999999999999999999999886469999998
Q ss_pred ccCCCC
Q 028584 198 ILDPAA 203 (207)
Q Consensus 198 l~~~~~ 203 (207)
+.....
T Consensus 277 i~~~~~ 282 (348)
T KOG4628|consen 277 IRTDSG 282 (348)
T ss_pred CCCCCC
Confidence 865443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.46 E-value=2.6e-14 Score=91.11 Aligned_cols=43 Identities=53% Similarity=1.302 Sum_probs=39.7
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
+|+||++.|..++.++.++|+|.||..||..|++.+. +||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence 5999999998888999999999999999999999987 999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.18 E-value=1.6e-11 Score=86.73 Aligned_cols=45 Identities=42% Similarity=0.985 Sum_probs=35.7
Q ss_pred cccccccccccccC----------CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 150 QEECAICLERFKVG----------DTLVHLPCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 150 ~~~C~ICle~~~~~----------~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
++.|+||++.|... ..+...+|+|.||..||.+|++.+. +||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 34499999999432 2455568999999999999999988 999997
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.1e-11 Score=105.86 Aligned_cols=55 Identities=45% Similarity=0.950 Sum_probs=47.9
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.....+|+||++.|..++.++.|||.|.||..|+++|+......||+||.+++++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp 374 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence 3456789999999999999999999999999999999984444899999998753
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.05 E-value=1.4e-10 Score=98.92 Aligned_cols=52 Identities=29% Similarity=0.737 Sum_probs=41.8
Q ss_pred cccccccccccccccCCe-----eEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDT-----LVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~-----~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..+.+|+||++.+..++. .+.++|+|.||..||.+|+.... +||+||..+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEeeE
Confidence 346789999999875431 23456999999999999999877 99999988753
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.7e-10 Score=97.58 Aligned_cols=50 Identities=32% Similarity=0.776 Sum_probs=43.7
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.....|.+|++...++ ..+||||+||+.||..|..... .||+||..+.+.
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcccc-CCCcccccCCCc
Confidence 4557899999998765 7889999999999999999887 899999988654
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.6e-10 Score=100.61 Aligned_cols=52 Identities=35% Similarity=0.897 Sum_probs=43.9
Q ss_pred ccccccccccccc-cccC---------CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLER-FKVG---------DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~-~~~~---------~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.+++..|.||+++ |..+ .++..|||||.||..|++.|++.++ +||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCcccCccc
Confidence 3567889999999 4443 2467899999999999999999998 9999999964
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.94 E-value=6.5e-10 Score=91.70 Aligned_cols=51 Identities=25% Similarity=0.696 Sum_probs=41.0
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC---------------CCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN---------------AHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---------------~~~CP~CR~~l~~ 200 (207)
..++.+|+||++.+.++ +.++|+|.||+.||..|+... ...||+||..+..
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34567899999998755 778899999999999998531 1379999998753
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.93 E-value=5.3e-10 Score=72.98 Aligned_cols=46 Identities=41% Similarity=0.881 Sum_probs=38.4
Q ss_pred cccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
+..|.||++... .++.+||+|. ||..|+..|+.... .||+||.+|.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKK-KCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTS-BBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCC-CCCcCChhhc
Confidence 467999999865 4688899999 99999999999776 9999999874
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.92 E-value=7.9e-10 Score=69.95 Aligned_cols=39 Identities=44% Similarity=0.958 Sum_probs=30.8
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCC---CCCCc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAH---NCPCC 194 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~---~CP~C 194 (207)
|+||++.|.++ +.|+|||.||..||..|++.... .||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999866 89999999999999999986542 69987
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.91 E-value=1.1e-09 Score=67.99 Aligned_cols=39 Identities=38% Similarity=1.058 Sum_probs=32.8
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCC 194 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~C 194 (207)
|+||++.+.+ .++.++|||.||..|+..|++.+. .||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~-~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNP-KCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTS-B-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcC-CCcCC
Confidence 8999999874 557889999999999999999965 99998
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.6e-09 Score=67.28 Aligned_cols=45 Identities=47% Similarity=1.146 Sum_probs=36.3
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
.|+||++.+. +.....+|+|.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 34455569999999999999997333899998754
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.85 E-value=2.4e-09 Score=77.39 Aligned_cols=59 Identities=36% Similarity=0.814 Sum_probs=45.0
Q ss_pred cccccccccccccccccccccC---------C-eeEEcCCCCcccHHhHHHHHhcC--CCCCCCcccCccC
Q 028584 142 KLSWKACEQEECAICLERFKVG---------D-TLVHLPCAHRFHARCLLPWLATN--AHNCPCCRMQILD 200 (207)
Q Consensus 142 ~~~~~~~~~~~C~ICle~~~~~---------~-~~~~lpC~H~Fh~~Ci~~wl~~~--~~~CP~CR~~l~~ 200 (207)
.+.|+..+++.|.||...|... + .++.-.|+|.||..||.+|+... +..||+||+++.-
T Consensus 13 ~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 13 TWKWDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred EEEEecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3456666788999999998741 2 23344599999999999999964 2489999998753
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-09 Score=90.24 Aligned_cols=51 Identities=33% Similarity=0.683 Sum_probs=41.9
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--CCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--HNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l~~~ 201 (207)
....+|.||++.-+++ ++..|||.||+-||.+|++... ..||+|+..|...
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4567899999997755 6777999999999999999654 3799999887543
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.3e-09 Score=84.86 Aligned_cols=50 Identities=30% Similarity=0.687 Sum_probs=41.6
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
....|+|||+.+... .++...|||+||..||...++... .||+|+..|..
T Consensus 130 ~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCC-CCCCcccccch
Confidence 457799999999743 335578999999999999999988 99999986643
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.74 E-value=9.7e-09 Score=63.95 Aligned_cols=40 Identities=45% Similarity=1.138 Sum_probs=33.6
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHh-cCCCCCCCc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLA-TNAHNCPCC 194 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~~CP~C 194 (207)
|+||++.+..+ ...++|+|.||..||..|+. .....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998744 35889999999999999999 333489988
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.67 E-value=1.7e-08 Score=64.20 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=36.6
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
.|.||++.|........++|+|+||..|+..+..... .||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~-~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSV-KCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCC-CCcCCCC
Confidence 3999999995555788889999999999999883333 8999974
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=2.8e-08 Score=67.15 Aligned_cols=45 Identities=27% Similarity=0.467 Sum_probs=39.9
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|+||.+.+.++ +.++|||+|+..||..|+..+. +||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~-~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHG-TDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCC-CCCCCcCCCC
Confidence 4599999999865 7789999999999999999865 9999998774
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.66 E-value=1.6e-08 Score=84.92 Aligned_cols=54 Identities=31% Similarity=0.706 Sum_probs=39.4
Q ss_pred ccccccccccccccccC-----CeeEEc-CCCCcccHHhHHHHHhcCC-----CCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVG-----DTLVHL-PCAHRFHARCLLPWLATNA-----HNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~-----~~~~~l-pC~H~Fh~~Ci~~wl~~~~-----~~CP~CR~~l~~ 200 (207)
...+.+|+||++..-.. .....| +|+|.||..||..|..... ..||+||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34568899999986432 112344 6999999999999998531 269999987753
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.64 E-value=2.9e-08 Score=59.42 Aligned_cols=39 Identities=46% Similarity=1.161 Sum_probs=32.3
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCC 194 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~C 194 (207)
|+||++... .++.++|+|.||..|+..|+......||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789998843 558889999999999999998443379987
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.2e-08 Score=96.52 Aligned_cols=52 Identities=40% Similarity=0.952 Sum_probs=44.6
Q ss_pred ccccccccccccccccCCe--eEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDT--LVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...+..|+||++.+..+.. ...|+|+|.||..|+..|++..+ +||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-tCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-TCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-cCCcchhhhh
Confidence 3457889999999987543 68899999999999999999987 9999998544
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=4.8e-08 Score=88.95 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=42.2
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.....|+||++.|..+ +.++|+|.||..||..|+.... .||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCC-CCCCCCCcccc
Confidence 3557899999999755 6789999999999999998876 89999998764
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.46 E-value=1.1e-07 Score=67.66 Aligned_cols=51 Identities=31% Similarity=0.654 Sum_probs=39.0
Q ss_pred ccccccccccccc------------CCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 150 QEECAICLERFKV------------GDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 150 ~~~C~ICle~~~~------------~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.+.|+||...|.. ++.++.. .|.|.||.-||.+||.+++ .||+++++++..
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeEEe
Confidence 3668888876643 1233333 4999999999999999987 999999988643
No 24
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.2e-07 Score=70.45 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=38.9
Q ss_pred cccccccccccccc-------------CCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKV-------------GDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~-------------~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..+.|+||...+-+ ++..+.. .|.|.||.-||.+||++++ .||+|..+..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~-vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN-VCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC-cCCCcCccee
Confidence 56779999876532 2334444 4999999999999999998 9999987764
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=2e-07 Score=59.22 Aligned_cols=39 Identities=36% Similarity=0.834 Sum_probs=23.0
Q ss_pred cccccccccc-CCeeEEcCCCCcccHHhHHHHHhcC---CCCCC
Q 028584 153 CAICLERFKV-GDTLVHLPCAHRFHARCLLPWLATN---AHNCP 192 (207)
Q Consensus 153 C~ICle~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~---~~~CP 192 (207)
|+||.+ |.. .+.++.|+|||+|+.+||..++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 654 3457889999999999999999865 23676
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.37 E-value=1.3e-07 Score=83.65 Aligned_cols=49 Identities=29% Similarity=0.833 Sum_probs=43.2
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.-..|.||.++|..+ +++||+|.||..||..+|..+. .||.|+.++.+.
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p-~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKP-QCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCC-CCCceecccchh
Confidence 456799999999876 8899999999999999998887 999999887653
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.6e-07 Score=79.18 Aligned_cols=51 Identities=33% Similarity=0.755 Sum_probs=41.9
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHH-HHhcCCCCCCCcccCccCCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLP-WLATNAHNCPCCRMQILDPA 202 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~-wl~~~~~~CP~CR~~l~~~~ 202 (207)
.+..|.||++....+ ..++|+|+||..||.. |-......||+||+.+.+..
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 467899999997644 8889999999999999 86666546999999887653
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.8e-07 Score=82.40 Aligned_cols=54 Identities=31% Similarity=0.829 Sum_probs=40.8
Q ss_pred ccccccccccccccccC---C-----------eeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVG---D-----------TLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~---~-----------~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
......|+||+.++.-- . .-+..||.|+||..|+..|...-+-.||+||.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34566899999886431 0 133569999999999999998543389999998864
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.15 E-value=1.4e-06 Score=61.28 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=37.7
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
+...|+|+.+.|.++ +.+++||.|...||..|+..+..+||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 456799999999866 8899999999999999999944499999887754
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.7e-06 Score=76.25 Aligned_cols=51 Identities=18% Similarity=0.516 Sum_probs=37.5
Q ss_pred cccccccccc-cccCC-eeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 150 QEECAICLER-FKVGD-TLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~-~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
+..|+||... +.+++ .+.+.+|||.||..|+...+......||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4679999995 33333 223337999999999999876655589999987754
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.14 E-value=9.9e-07 Score=76.77 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=41.6
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.-..|-||-+.|..+ ..++|+|.||..||...|..+. .||+||.+..+
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp-~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQP-FCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCC-CCccccccHHh
Confidence 345799999999866 7889999999999999999887 99999987653
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.13 E-value=2.4e-06 Score=55.73 Aligned_cols=43 Identities=26% Similarity=0.730 Sum_probs=33.0
Q ss_pred cccccccccccCCeeEEcCCC-----CcccHHhHHHHHhcCC-CCCCCcc
Q 028584 152 ECAICLERFKVGDTLVHLPCA-----HRFHARCLLPWLATNA-HNCPCCR 195 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~-~~CP~CR 195 (207)
.|.||++. ..++.....||. |.||..|+.+|+.... .+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 38999983 334456678974 7899999999997653 3899994
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.2e-06 Score=81.05 Aligned_cols=48 Identities=38% Similarity=0.758 Sum_probs=39.0
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC----CCCCCcccCccC
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA----HNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~~CP~CR~~l~~ 200 (207)
+..|+||++....+ ..+.|||+||..||-.++.... ..||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999997654 5666999999999988877552 279999988765
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1e-06 Score=73.89 Aligned_cols=45 Identities=42% Similarity=0.876 Sum_probs=39.1
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
..+...|+||++.|..+ ..++|+|.||..|+..++. ....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 34677899999999876 8899999999999999988 334899999
No 35
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.1e-07 Score=63.72 Aligned_cols=56 Identities=39% Similarity=0.856 Sum_probs=40.9
Q ss_pred ccccccccccccccccccccC---------CeeEEcC-CCCcccHHhHHHHHhcCC--CCCCCcccCcc
Q 028584 143 LSWKACEQEECAICLERFKVG---------DTLVHLP-CAHRFHARCLLPWLATNA--HNCPCCRMQIL 199 (207)
Q Consensus 143 ~~~~~~~~~~C~ICle~~~~~---------~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l~ 199 (207)
+.|+..+ +.|.||.-.|... +.+.++. |.|.||..||.+|+.... ..||+||+++.
T Consensus 14 wtW~~~~-e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 14 WTWDAPD-ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred EEEcCCC-CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3444433 4899999888641 3344443 999999999999998543 38999999875
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=6.9e-07 Score=79.42 Aligned_cols=58 Identities=29% Similarity=0.609 Sum_probs=45.9
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCCCCCCCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAASSAD 207 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~~~~~d 207 (207)
..+..|+||+..+... +....|.|.||..||..-+...+..||.||..+........|
T Consensus 41 ~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 3557799999999743 344459999999999999987777999999988776654443
No 37
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.05 E-value=1.5e-06 Score=85.32 Aligned_cols=50 Identities=48% Similarity=1.068 Sum_probs=39.5
Q ss_pred ccccccccccccccc-cCCeeEEcC------CCCcccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 147 ACEQEECAICLERFK-VGDTLVHLP------CAHRFHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~-~~~~~~~lp------C~H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
.....+|+||+..+. .. +.+| |.|.||..|+.+|+.... .+||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vd---r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVD---RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHh---ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 357789999999876 22 2333 899999999999999654 48999998764
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.04 E-value=8.2e-07 Score=62.14 Aligned_cols=50 Identities=30% Similarity=0.695 Sum_probs=23.3
Q ss_pred cccccccccccc-cCCeeEEc----CCCCcccHHhHHHHHhcC---C-------CCCCCcccCcc
Q 028584 150 QEECAICLERFK-VGDTLVHL----PCAHRFHARCLLPWLATN---A-------HNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~-~~~~~~~l----pC~H~Fh~~Ci~~wl~~~---~-------~~CP~CR~~l~ 199 (207)
+..|.||+..+. .++.+..+ .|+..||..||..||... . ..||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 356999999876 33222221 489999999999998842 1 15999998874
No 39
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1e-06 Score=75.87 Aligned_cols=54 Identities=26% Similarity=0.658 Sum_probs=42.1
Q ss_pred cccccccccccccccCC-------eeEEcCCCCcccHHhHHHHHhcCC-CCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGD-------TLVHLPCAHRFHARCLLPWLATNA-HNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~-------~~~~lpC~H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~~~ 201 (207)
.++..|+||-..+.... +.-.|.|+|+||..||.-|-.-.+ ++||.|+..+...
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 35677999998876543 567889999999999999965332 3999998877543
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.89 E-value=4.1e-06 Score=76.52 Aligned_cols=50 Identities=34% Similarity=0.905 Sum_probs=39.2
Q ss_pred ccccccccccccccccCC-eeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGD-TLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..+.++|+||++.+...- .++...|.|.||..|+..|... +||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 457789999999987542 3345569999999999999643 8999997654
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.7e-06 Score=71.84 Aligned_cols=48 Identities=29% Similarity=0.631 Sum_probs=39.8
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..+|+||+....- ++.|+|+|.||..||+--.......|++||.+|..
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCc---CccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 4679999998754 48899999999999987776665479999998864
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=9.3e-06 Score=72.41 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=40.1
Q ss_pred cccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
....+|.||+.+..+ ...|||.|. .|..|.+..--..+ .||+||++|.+
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhc-CCCccccchHh
Confidence 346789999999764 489999997 89999988765555 89999998864
No 43
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2e-05 Score=66.48 Aligned_cols=62 Identities=31% Similarity=0.644 Sum_probs=48.8
Q ss_pred cccccccccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC-------CCCCCcccCccCCC
Q 028584 140 WSKLSWKACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA-------HNCPCCRMQILDPA 202 (207)
Q Consensus 140 ~~~~~~~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-------~~CP~CR~~l~~~~ 202 (207)
+..|..+.+....|.+|-..+..++++ .|-|-|.||++|+..|...-. ..||.|..+|+++.
T Consensus 40 YLqWL~DsDY~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 40 YLQWLQDSDYNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred HHHHHhhcCCCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 445555677788899999999988654 556999999999999966421 27999999998764
No 44
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.8e-05 Score=71.28 Aligned_cols=48 Identities=31% Similarity=0.889 Sum_probs=36.3
Q ss_pred ccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcCCC--CCCCcccCc
Q 028584 151 EECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNAH--NCPCCRMQI 198 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~--~CP~CR~~l 198 (207)
..|.||.+.+.+...+.-+. |||+||..|+..|+..... .||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 56999965555544555554 9999999999999996542 799998433
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.4e-05 Score=53.09 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=34.9
Q ss_pred ccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.+|.||++.-.+. +...|+|. .|.+|-.+.++.....||+||++|.
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 6799999875432 44569997 8999987776633339999999874
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6.2e-05 Score=67.60 Aligned_cols=52 Identities=31% Similarity=0.810 Sum_probs=38.2
Q ss_pred cccccccccccccccCC----eeEEcC-CCCcccHHhHHHHHhcCC------CCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGD----TLVHLP-CAHRFHARCLLPWLATNA------HNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl~~~~------~~CP~CR~~l~ 199 (207)
..+..|.||++.+.... ...+|| |.|.||..||..|-.... +.||+||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45778999999876431 123445 999999999999974322 38999997653
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.39 E-value=4.3e-05 Score=74.09 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=43.7
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+....|++|+..+.+.......+|+|.||..||..|-...+ +||+||..+..
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~EF~~ 172 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-cCchhhhhhhe
Confidence 356678999999988654455567999999999999999887 99999987653
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=5.8e-05 Score=72.91 Aligned_cols=50 Identities=28% Similarity=0.612 Sum_probs=40.8
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.-..|++|-..+.+- ++..|+|.||..|+.+-+......||.|...|.+.
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 446799999877643 55669999999999999997766999998887654
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.33 E-value=4e-05 Score=52.57 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=22.6
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
-..|++|.+.+..+ +....|.|+||..||..-+. . .||+|+.+..
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~-~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--S-ECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--T-B-SSS--B-S
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--C-CCCCcCChHH
Confidence 35699999999754 34456999999999977443 2 6999987653
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00016 Score=66.19 Aligned_cols=51 Identities=29% Similarity=0.666 Sum_probs=43.1
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPA 202 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~ 202 (207)
..+..|.||+..|..+ +.+||||.||..||.+-+.... .||.||..+...+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~-~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQET-ECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCC-CCcccccccccch
Confidence 4667899999999765 7789999999999999777665 9999999987643
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.21 E-value=0.00012 Score=66.37 Aligned_cols=49 Identities=33% Similarity=0.788 Sum_probs=37.9
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC-CCCCCCcccCccCCC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN-AHNCPCCRMQILDPA 202 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~~CP~CR~~l~~~~ 202 (207)
..|-||-+.= ..+.+-||||..|..|+..|-... ..+||+||.+|...+
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3599998762 245666899999999999998654 349999999886543
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.17 E-value=0.00013 Score=63.99 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=42.0
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc------------------CC----CCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT------------------NA----HNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------------------~~----~~CP~CR~~l~~ 200 (207)
..-.|.||+--|..++..+.++|.|.||..|+.++|.. -. .+||+||..|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34569999999999888999999999999999877542 11 279999988763
No 53
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00031 Score=63.86 Aligned_cols=47 Identities=32% Similarity=0.909 Sum_probs=37.0
Q ss_pred cccccccccccccC--CeeEEcCCCCcccHHhHHHHHhcCC-CCCCCccc
Q 028584 150 QEECAICLERFKVG--DTLVHLPCAHRFHARCLLPWLATNA-HNCPCCRM 196 (207)
Q Consensus 150 ~~~C~ICle~~~~~--~~~~~lpC~H~Fh~~Ci~~wl~~~~-~~CP~CR~ 196 (207)
..+|+||++.+... ..++.+.|+|.|...||+.|+.+.. ..||.|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 46799999987643 3566777999999999999996332 37999965
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.05 E-value=0.00013 Score=64.48 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=42.2
Q ss_pred cccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 146 KACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
+......|.+|-.+|.+. ..+..|-|.||+.||...|...+ .||.|...|..
T Consensus 11 ~~n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~-~CP~C~i~ih~ 62 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESK-YCPTCDIVIHK 62 (331)
T ss_pred hcccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhc-cCCccceeccC
Confidence 345667899999999854 33445999999999999999977 99999876643
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.94 E-value=0.00046 Score=63.15 Aligned_cols=51 Identities=35% Similarity=0.770 Sum_probs=42.4
Q ss_pred ccccccccccccccccCCeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 147 ACEQEECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
..++..|+||...+.++ .. ..|+|.||..|+..|+..+. .||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCc-CCcccccccchh
Confidence 45668899999999865 33 58999999999999999965 999998877543
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.94 E-value=0.00032 Score=63.53 Aligned_cols=50 Identities=38% Similarity=0.820 Sum_probs=40.6
Q ss_pred cccccccccccccccc-CCeeEEcCCCCcccHHhHHHHHhcCC-CCCCCccc
Q 028584 147 ACEQEECAICLERFKV-GDTLVHLPCAHRFHARCLLPWLATNA-HNCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~~CP~CR~ 196 (207)
..-+..|..|-+.+-. ++.+..|||.|+||..|+.+.|.++. .+||.||.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456679999998754 35778899999999999999998765 38999983
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0012 Score=57.21 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=38.7
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC-CCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN-AHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~~CP~CR~~l~ 199 (207)
...+.+|++|.+.-..+ .+..+|+|+||+.||..-+... .++||.|-.++.
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34678899999885533 3556799999999998766533 249999988776
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.75 E-value=0.0011 Score=44.55 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=28.6
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC-CCCCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA-HNCPC 193 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~~CP~ 193 (207)
....|+|.+..|.+ .++...|+|.|-+..|..|+..+. ..||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34679999999984 466668999999999999994332 37998
No 59
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0011 Score=59.49 Aligned_cols=49 Identities=27% Similarity=0.600 Sum_probs=41.7
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..++..|+||+-.-. ..+..||+|.-|+.||.+.+.+.+ .|-+|+..+.
T Consensus 419 ~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k-~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCK-RCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCC-eeeEecceee
Confidence 357888999997643 347889999999999999999987 9999998776
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.39 E-value=0.0014 Score=42.58 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=22.2
Q ss_pred ccccccccccCCeeEEcC--CCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 153 CAICLERFKVGDTLVHLP--CAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
|++|.+++... ....+| |++.+|..|+...+......||-||.+.
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999988432 223445 8999999999998864334999999764
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.38 E-value=0.0012 Score=54.97 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=37.8
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
..|.||-++|..+ +...|||.||..|...-++... .|-+|....
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGD-ECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCC-cceecchhh
Confidence 3799999999866 7888999999999988888876 999997644
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.15 E-value=0.0038 Score=64.49 Aligned_cols=53 Identities=26% Similarity=0.607 Sum_probs=41.5
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--------C-CCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--------H-NCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--------~-~CP~CR~~l~ 199 (207)
.+.++.|.||+.+--.....+.|.|+|+||..|....|++.= + .||+|..+|.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 456778999998755555778999999999999988776531 1 7999988763
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.05 E-value=0.0026 Score=46.88 Aligned_cols=34 Identities=26% Similarity=0.694 Sum_probs=28.7
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHH
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLL 181 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~ 181 (207)
..+...|++|...|.+ ......||+|.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3466779999999986 477888999999999975
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0097 Score=53.45 Aligned_cols=47 Identities=32% Similarity=0.659 Sum_probs=34.5
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
......|.||++...+ .+.+||||.-| |..-- +... .||+||..|..
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~-~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLP-QCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCC-CCchhHHHHHH
Confidence 4466779999998764 58999999876 65432 2333 79999987754
No 65
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.89 E-value=0.0053 Score=54.11 Aligned_cols=43 Identities=26% Similarity=0.681 Sum_probs=36.1
Q ss_pred ccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 151 EECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
..|+.|-..+.++ ..++ |+|.||..||..-|....+.||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6799999999865 5556 89999999999887766679999954
No 66
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.81 E-value=0.0049 Score=39.67 Aligned_cols=41 Identities=32% Similarity=0.807 Sum_probs=27.2
Q ss_pred ccccccccccCCeeEEcCCC--C---cccHHhHHHHHhcCC-CCCCCc
Q 028584 153 CAICLERFKVGDTLVHLPCA--H---RFHARCLLPWLATNA-HNCPCC 194 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~~~~-~~CP~C 194 (207)
|-||++.-...+ ....||. - ..|..|+..|+.... ..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998866543 4567763 3 689999999998543 379887
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0071 Score=55.23 Aligned_cols=48 Identities=27% Similarity=0.613 Sum_probs=38.0
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC-------CCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA-------HNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-------~~CP~CR~ 196 (207)
....|.||++...-....+.+||+|+||..|+..++.... -.||-+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4567999999987557889999999999999999877432 16876643
No 68
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0041 Score=54.55 Aligned_cols=45 Identities=29% Similarity=0.509 Sum_probs=38.8
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|-||.++|..+ ++..|+|.||..|...-++... .|++|...+-
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTH 286 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCC-cceecccccc
Confidence 3599999999876 8888999999999988888876 9999987654
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.61 E-value=0.0055 Score=57.68 Aligned_cols=51 Identities=22% Similarity=0.638 Sum_probs=39.1
Q ss_pred cccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc----CCCCCCCcccCcc
Q 028584 146 KACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT----NAHNCPCCRMQIL 199 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----~~~~CP~CR~~l~ 199 (207)
+..++..|.+|-+.-++. +...|.|.||..|+.+++.. .+.+||.|.-.+.
T Consensus 532 enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 455778899999886543 67789999999999888663 2248999976653
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.56 E-value=0.0063 Score=59.90 Aligned_cols=50 Identities=32% Similarity=0.783 Sum_probs=36.9
Q ss_pred ccccccccccccccccCCeeEE-cCCCCcccHHhHHHHHhcCCC------CCCCccc
Q 028584 147 ACEQEECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATNAH------NCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~------~CP~CR~ 196 (207)
.....+|.||++.+.....+-. -.|.|+||..||..|..+... .||.|+.
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4567789999999875432211 238999999999999875321 6999984
No 71
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.54 E-value=0.0072 Score=47.36 Aligned_cols=37 Identities=30% Similarity=0.594 Sum_probs=30.3
Q ss_pred cccccccccccccCCeeEEcCCC------CcccHHhHHHHHhc
Q 028584 150 QEECAICLERFKVGDTLVHLPCA------HRFHARCLLPWLAT 186 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~------H~Fh~~Ci~~wl~~ 186 (207)
..+|.||++.+.+++.++.++|+ |.||..|+.+|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 46799999999885678888875 66999999999443
No 72
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.005 Score=49.75 Aligned_cols=29 Identities=45% Similarity=1.044 Sum_probs=26.6
Q ss_pred ccccccccccccccCCeeEEcCCCCcccH
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHA 177 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~ 177 (207)
+.-+|.||+|++..++++..|||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45679999999999999999999999996
No 73
>PHA02862 5L protein; Provisional
Probab=95.24 E-value=0.016 Score=46.02 Aligned_cols=45 Identities=20% Similarity=0.583 Sum_probs=33.6
Q ss_pred ccccccccccccCCeeEEcCCC-----CcccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCA-----HRFHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
+.|-||.+.-.+. .-||. ...|..|+.+|+.... ..|++|+.+..
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 5699999984322 35764 3599999999998554 38999998764
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.012 Score=51.30 Aligned_cols=48 Identities=31% Similarity=0.636 Sum_probs=39.4
Q ss_pred ccccccccccccCC---eeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 151 EECAICLERFKVGD---TLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 151 ~~C~ICle~~~~~~---~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
..|-||-++|...+ .+..|.|+|.||..|+...+....-.||+||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 46999999998763 4566779999999999888776655899999874
No 75
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.92 E-value=0.023 Score=45.73 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=35.3
Q ss_pred cccccccccccccccCCeeEEcCCCC-----cccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAH-----RFHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H-----~Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
..+..|-||.+.-.+ ...||.. ..|..|+.+|+.... ..|++|..+..
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 456779999987431 2357644 469999999998654 38999998764
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.0054 Score=53.81 Aligned_cols=42 Identities=33% Similarity=0.751 Sum_probs=32.9
Q ss_pred cccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|.||++.-. ..+.|+|||. -|..|-+.. + .||+||+-|+
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~-eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----N-ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----c-cCchHHHHHH
Confidence 677999998754 5589999995 688887654 2 7999998664
No 77
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.026 Score=50.32 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=35.9
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
..+...|+||+....++ .+ ...-|-+||+.|+...+.+.+ .||+=.
T Consensus 297 ~~~~~~CpvClk~r~Np-tv-l~vSGyVfCY~Ci~~Yv~~~~-~CPVT~ 342 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNP-TV-LEVSGYVFCYPCIFSYVVNYG-HCPVTG 342 (357)
T ss_pred CCccccChhHHhccCCC-ce-EEecceEEeHHHHHHHHHhcC-CCCccC
Confidence 44667899999998765 22 223699999999999999887 999743
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.50 E-value=0.025 Score=50.80 Aligned_cols=53 Identities=23% Similarity=0.521 Sum_probs=38.6
Q ss_pred ccccccccccccccccCCee-EEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTL-VHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.++++.|++|++.+...++- .--|||...|..|+...-+.-+..||-||....
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 34556699999988765432 234689999999988776654459999997654
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.47 E-value=0.024 Score=37.70 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=31.4
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..|..|...-. +-+.+||+|..+..|..-+ .-+ -||+|..++..
T Consensus 8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~--rYn-gCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGE--RYN-GCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccccc---ccccccccceeeccccChh--hcc-CCCCCCCcccC
Confidence 44666655533 3478899999999998664 233 79999988754
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.032 Score=45.86 Aligned_cols=34 Identities=32% Similarity=0.770 Sum_probs=26.2
Q ss_pred EcCCCCcccHHhHHHHHhcC-----C-----CCCCCcccCccCC
Q 028584 168 HLPCAHRFHARCLLPWLATN-----A-----HNCPCCRMQILDP 201 (207)
Q Consensus 168 ~lpC~H~Fh~~Ci~~wl~~~-----~-----~~CP~CR~~l~~~ 201 (207)
...|+.-||.-|+..||..- + ..||+|..++..+
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 34599999999999998741 1 1699999887543
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.20 E-value=0.051 Score=47.03 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=38.0
Q ss_pred cccccccccccccccCCeeE-EcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLV-HLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~-~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.....|||....|......+ ..||||+|...+|...- ... .||+|-.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~-~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSK-KCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccc-cccccCCccc
Confidence 45678999999995443444 45899999999999973 233 8999988765
No 82
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.05 Score=46.85 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=42.2
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
....|+||.+.+.+.-....| ||+|+|+..|.+..+.... .||+|-.++.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcc
Confidence 556899999999876555555 6999999999999988877 99999876654
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.01 E-value=0.024 Score=35.81 Aligned_cols=42 Identities=26% Similarity=0.735 Sum_probs=23.0
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCC-CCCCc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAH-NCPCC 194 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~-~CP~C 194 (207)
|.+|-+....+..-....|+-.+|..|+..++..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6778887766632222248889999999999886653 59987
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.95 E-value=0.059 Score=48.55 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=36.9
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHH--HhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPW--LATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~w--l~~~~~~CP~CR~~l~ 199 (207)
.+...|-||-+.+. -...+||+|..|..|..+. |.... .||+||.+..
T Consensus 59 Een~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K-~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQK-GCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhcc-CCCccccccc
Confidence 45567999998764 4578899999999998654 44444 8999998653
No 85
>PHA03096 p28-like protein; Provisional
Probab=93.84 E-value=0.033 Score=49.04 Aligned_cols=45 Identities=29% Similarity=0.538 Sum_probs=31.0
Q ss_pred ccccccccccccCC----eeEEcC-CCCcccHHhHHHHHhcCC--CCCCCcc
Q 028584 151 EECAICLERFKVGD----TLVHLP-CAHRFHARCLLPWLATNA--HNCPCCR 195 (207)
Q Consensus 151 ~~C~ICle~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl~~~~--~~CP~CR 195 (207)
..|.||++...... .-..|+ |.|.||..|+..|-.... .+||.|+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 56999999765421 223455 999999999999976443 1444443
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=0.067 Score=52.95 Aligned_cols=42 Identities=29% Similarity=0.843 Sum_probs=32.7
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
..|.+|--.+..+ .++..|+|.||..|+. .+. ..||.|+.++
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~-~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKE-DKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCc-ccCCccchhh
Confidence 4599999888744 5677799999999998 233 4899998643
No 87
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.066 Score=48.78 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=42.4
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--CCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--HNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l~ 199 (207)
....|||=-+.-.+.+.++.|.|||+...+-|.+...... +.||+|-.+..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 3457999888877778899999999999999999888776 68999965543
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.66 E-value=0.045 Score=53.50 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=37.2
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCC-CCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAH-NCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~-~CP~CR~~l~~ 200 (207)
..|.||++ . +..+..+|+|.||..|+..-+..... .||.||..+..
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 2 45678889999999999988875543 59999976643
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.63 E-value=0.063 Score=47.00 Aligned_cols=47 Identities=28% Similarity=0.623 Sum_probs=37.9
Q ss_pred ccccccccccccccCC-eeEEcCCCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 149 EQEECAICLERFKVGD-TLVHLPCAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
....|+||.+.+.... .+..++|+|..|..|+......+ -+||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3445999999876543 55678899999999999988877 49999987
No 90
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.61 E-value=0.07 Score=47.29 Aligned_cols=44 Identities=23% Similarity=0.645 Sum_probs=33.6
Q ss_pred cccccccccccccccCCeeEEcCC--CCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPC--AHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.+-.+|+||.+.+..+ +..| ||..|..|-.+ ..+ .||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~-~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSN-KCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhhh---hcc-cCCccccccc
Confidence 3557799999999765 3346 79999999754 344 8999998875
No 91
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.40 E-value=0.13 Score=40.39 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=38.5
Q ss_pred ccccccccccccccCCeeEEc-C---CCCcccHHhHHHHHhcCC--CCCCCcccCccCCC
Q 028584 149 EQEECAICLERFKVGDTLVHL-P---CAHRFHARCLLPWLATNA--HNCPCCRMQILDPA 202 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-p---C~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l~~~~ 202 (207)
.-.+|.||.+...+. ..| | ||-..|..|....++..+ ++||.|+..+-...
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 346799999987654 344 3 899999999988777544 48999999886443
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.32 E-value=0.13 Score=41.47 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=22.5
Q ss_pred ccccccccccccccCCeeEEcCC------------C-CcccHHhHHHHHh
Q 028584 149 EQEECAICLERFKVGDTLVHLPC------------A-HRFHARCLLPWLA 185 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC------------~-H~Fh~~Ci~~wl~ 185 (207)
++..|+||++.-.+. +.|-| + ..-|..||+++.+
T Consensus 1 ed~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356799999985543 44433 2 2357899998754
No 93
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.11 E-value=0.089 Score=45.22 Aligned_cols=47 Identities=26% Similarity=0.692 Sum_probs=35.5
Q ss_pred ccccccccccc-cccCCe-eEEcC-CCCcccHHhHHHHHhcCCCCCC--Ccc
Q 028584 149 EQEECAICLER-FKVGDT-LVHLP-CAHRFHARCLLPWLATNAHNCP--CCR 195 (207)
Q Consensus 149 ~~~~C~ICle~-~~~~~~-~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP--~CR 195 (207)
.+..|+||..+ +-+++. +.+-| |-|..|.+|+++.|......|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 45679999975 334443 33335 9999999999999998877899 564
No 94
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.015 Score=52.83 Aligned_cols=51 Identities=31% Similarity=0.637 Sum_probs=42.9
Q ss_pred ccccccccccccccC-CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVG-DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
-...|+||.+.+... +++..+.|+|.+|..||..|+.+.. .||.|+.++..
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~-kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR-KLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-HhHHHHhhhhh
Confidence 345799999998865 5666778999999999999999876 99999988753
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.11 E-value=0.33 Score=32.22 Aligned_cols=33 Identities=33% Similarity=0.807 Sum_probs=27.5
Q ss_pred cccccccccccccCCeeEEcC-CCCcccHHhHHH
Q 028584 150 QEECAICLERFKVGDTLVHLP-CAHRFHARCLLP 182 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~ 182 (207)
...|.+|-+.|.+++.+++-| |+-.+|..|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456999999998777777766 999999999765
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.23 Score=44.24 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=30.4
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|.-|--.+.. --+.+||.|+||.+|...- .. +.||.|-..|.
T Consensus 90 VHfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~~--~d-K~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI--YGRMIPCKHVFCLECARSD--SD-KICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCccee--eecccccchhhhhhhhhcC--cc-ccCcCcccHHH
Confidence 4567777655432 2356799999999997542 22 38999976553
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=0.19 Score=50.04 Aligned_cols=38 Identities=26% Similarity=0.633 Sum_probs=30.1
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHh
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLA 185 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 185 (207)
...++.|.+|...+... .....||+|.||+.||.+-..
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 34667899999988753 667779999999999977643
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.18 E-value=0.25 Score=44.84 Aligned_cols=29 Identities=28% Similarity=0.827 Sum_probs=23.4
Q ss_pred CCCcccHHhHHHHHhcCC------------CCCCCcccCcc
Q 028584 171 CAHRFHARCLLPWLATNA------------HNCPCCRMQIL 199 (207)
Q Consensus 171 C~H~Fh~~Ci~~wl~~~~------------~~CP~CR~~l~ 199 (207)
|...+|.+|+-+||...+ ..||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 567789999999988643 17999999864
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.00 E-value=0.28 Score=41.28 Aligned_cols=39 Identities=36% Similarity=0.686 Sum_probs=28.8
Q ss_pred ccccccccccCCeeEEcCCCC-cccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 153 CAICLERFKVGDTLVHLPCAH-RFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
|-+|-+. +..+..+||.| .+|..|-.. -. .||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~-~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LR-ICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----Cc-cCCCCcChhh
Confidence 7777766 34788899998 488888643 22 7999987654
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=0.2 Score=48.46 Aligned_cols=40 Identities=33% Similarity=0.681 Sum_probs=30.2
Q ss_pred cccccccccccccCC-eeEEcCCCCcccHHhHHHHHhcCCCCCC
Q 028584 150 QEECAICLERFKVGD-TLVHLPCAHRFHARCLLPWLATNAHNCP 192 (207)
Q Consensus 150 ~~~C~ICle~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP 192 (207)
-..|.||+..|.+.. ..+.+-|+|..|..|+.... +. +||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly-n~--scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY-NA--SCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh-hc--cCC
Confidence 356999998887642 45667799999999997754 22 788
No 101
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.56 E-value=0.34 Score=47.78 Aligned_cols=26 Identities=31% Similarity=0.814 Sum_probs=22.9
Q ss_pred EEcCCCCcccHHhHHHHHhcCCCCCCC
Q 028584 167 VHLPCAHRFHARCLLPWLATNAHNCPC 193 (207)
Q Consensus 167 ~~lpC~H~Fh~~Ci~~wl~~~~~~CP~ 193 (207)
+-..|+|+.|.+|...|+.... .||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCC-cCCC
Confidence 3456999999999999999987 9986
No 102
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=0.31 Score=42.26 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=35.4
Q ss_pred ccccccccccccccCCee-EEcCC-----CCcccHHhHHHHHhcCC-------CCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTL-VHLPC-----AHRFHARCLLPWLATNA-------HNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~-~~lpC-----~H~Fh~~Ci~~wl~~~~-------~~CP~CR~~l~ 199 (207)
.+..|=||+..=+++... -+-|| .|+.|..|+..|+..++ ..||.|+.+..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 455688999875543111 12366 47899999999998643 16999998654
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.55 E-value=0.24 Score=51.15 Aligned_cols=47 Identities=28% Similarity=0.616 Sum_probs=38.4
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQ 197 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~ 197 (207)
.....|.||.+.+.+- . .+..|+|.+|..|+..|+..+. .||.|...
T Consensus 1151 ~~~~~c~ic~dil~~~-~-~I~~cgh~~c~~c~~~~l~~~s-~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQ-G-GIAGCGHEPCCRCDELWLYASS-RCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhc-C-CeeeechhHhhhHHHHHHHHhc-cCcchhhh
Confidence 4556899999998732 2 4455999999999999999988 99999743
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=0.28 Score=44.96 Aligned_cols=39 Identities=31% Similarity=0.664 Sum_probs=27.9
Q ss_pred ccccccccccccccC-CeeEEcCCCCcccHHhHHHHHhcC
Q 028584 149 EQEECAICLERFKVG-DTLVHLPCAHRFHARCLLPWLATN 187 (207)
Q Consensus 149 ~~~~C~ICle~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~ 187 (207)
...+|.||+...... +......|+|.||..|+.+.+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 456799999444333 333345699999999999988743
No 105
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.09 E-value=0.24 Score=48.32 Aligned_cols=46 Identities=35% Similarity=0.691 Sum_probs=36.9
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--CCCCCcccCc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--HNCPCCRMQI 198 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l 198 (207)
..+|+||...+..+ +.+.|.|.|+..|+..-|...+ ..||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 46799999998866 7788999999999977666443 3799998654
No 106
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.84 E-value=0.67 Score=40.22 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=36.2
Q ss_pred ccccccccccccccCCe-eEEcCCC-----CcccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDT-LVHLPCA-----HRFHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~-~~~lpC~-----H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
++..|-||..+...... ....||. ...|..|+..|+...+ ..|.+|.....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 35789999997653321 4566764 3479999999998443 38999987554
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.68 E-value=0.3 Score=31.62 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=24.9
Q ss_pred cccccccccccCCeeEEcCC-CCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 152 ECAICLERFKVGDTLVHLPC-AHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC-~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.|--|+-... ..+.| .|..|..|+...+.... .||+|..+++.
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~-~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSD-RCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSS-EETTTTEE---
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhcccc-CCCcccCcCcc
Confidence 3666664432 23456 59999999999998887 99999988754
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.33 E-value=0.77 Score=45.71 Aligned_cols=50 Identities=24% Similarity=0.697 Sum_probs=37.4
Q ss_pred ccccccccccccccCCeeEEcCCCCc-----ccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHR-----FHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~-----Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
++..|-||..+=.. +.+..-||... .|.+|+.+|+.... ..|-+|+.++.
T Consensus 11 d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 55789999987543 34455677654 89999999999654 37999998764
No 109
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.20 E-value=1.3 Score=39.54 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=37.5
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--CCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--HNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~~CP~CR~ 196 (207)
....||+=-+.-.+++.++.|.|+|+.-..-+...-+++. +.||+|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3457988777766667788999999999999988766554 48999953
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.61 E-value=0.97 Score=40.03 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=22.9
Q ss_pred CCCcccHHhHHHHHhcCC------------CCCCCcccCcc
Q 028584 171 CAHRFHARCLLPWLATNA------------HNCPCCRMQIL 199 (207)
Q Consensus 171 C~H~Fh~~Ci~~wl~~~~------------~~CP~CR~~l~ 199 (207)
|...+|.+|+.+|+.... .+||.||+++.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 567799999999986432 28999998774
No 111
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=80.01 E-value=5.3 Score=35.88 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCCCCcchhhhchhhhccccceeecccCCCCcccccccccccccccccccccccccc
Q 028584 82 AREAKERLDERLGTQRKSSDSNSRQNGKESSVLMNINKSTVLHTQVFGSKKSGSKRFSWSKLSWKACEQEECAICLERFK 161 (207)
Q Consensus 82 ~~Ea~erL~erl~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~~~~C~ICle~~~ 161 (207)
.+...|.|.+++.+.+-.-+..-.|-.. ....+...+..-|..+|-.-..-.-...|...+.....+.+|++|+..-.
T Consensus 275 t~k~lE~~~~~iNA~RPQCPVglnTL~~--P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 275 TMKHLEALRQEINAARPQCPVGLNTLAF--PSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred cHHHHHHHHHHHhccCCCCCcccceeec--ccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeeeecc
Confidence 3566778888888777554321000000 00001111222222233332222222234444444456778999987521
Q ss_pred c---------------C-CeeEEcCCCCcccHHhHHHHHhcCC--------CCCCCcccCcc
Q 028584 162 V---------------G-DTLVHLPCAHRFHARCLLPWLATNA--------HNCPCCRMQIL 199 (207)
Q Consensus 162 ~---------------~-~~~~~lpC~H~Fh~~Ci~~wl~~~~--------~~CP~CR~~l~ 199 (207)
. + -.-..-||+|+--..-..-|-+..- ..||+|-..+.
T Consensus 353 ~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 353 YVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred eeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 1 0 0122458999988888888866422 27999977654
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.32 E-value=3.7 Score=40.69 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=31.7
Q ss_pred ccccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCC
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPC 193 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~ 193 (207)
......|.+|-..+. + ....- -|+|.-|..|+..|+.... .||.
T Consensus 776 s~a~~~CtVC~~vi~-G-~~~~c~~C~H~gH~sh~~sw~~~~s-~ca~ 820 (839)
T KOG0269|consen 776 SRASAKCTVCDLVIR-G-VDVWCQVCGHGGHDSHLKSWFFKAS-PCAK 820 (839)
T ss_pred HHhhcCceeecceee-e-eEeecccccccccHHHHHHHHhcCC-CCcc
Confidence 345557999977765 2 12222 2999999999999999887 6665
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.09 E-value=1 Score=44.75 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=38.8
Q ss_pred cccccccccccccccccCC-eeEEcC---CCCcccHHhHHHHHhcCC-----CCCCCcccCcc
Q 028584 146 KACEQEECAICLERFKVGD-TLVHLP---CAHRFHARCLLPWLATNA-----HNCPCCRMQIL 199 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~-~~~~lp---C~H~Fh~~Ci~~wl~~~~-----~~CP~CR~~l~ 199 (207)
+......|.||...+.++. ....+| |.|.||..||..|...-. ..|++|...|.
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3456678999998888632 233444 999999999999977422 26899977664
No 114
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=1.8 Score=39.62 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=30.7
Q ss_pred cccccccccccccCCeeEE--cCCCCcccHHhHHHHHhcCCCCCCCc
Q 028584 150 QEECAICLERFKVGDTLVH--LPCAHRFHARCLLPWLATNAHNCPCC 194 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~--lpC~H~Fh~~Ci~~wl~~~~~~CP~C 194 (207)
-..|++|.-.+.-.....+ -.|+|.||+.|...|...+. .|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~-~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNG-ECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCc-cccCc
Confidence 4569988877654432333 34899999999999987765 56443
No 116
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.85 E-value=2.4 Score=39.45 Aligned_cols=37 Identities=30% Similarity=0.754 Sum_probs=30.2
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN 187 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~ 187 (207)
....|.||.+.+.. .+..+.|+|.||..|+...+..+
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 45679999999864 45677899999999999887754
No 117
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=70.19 E-value=4.2 Score=23.48 Aligned_cols=36 Identities=25% Similarity=0.628 Sum_probs=24.3
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
|..|-+.+...+. ....=+..||..|+ .|..|...|
T Consensus 2 C~~C~~~i~~~~~-~~~~~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGEL-VLRALGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcE-EEEeCCccccccCC---------CCcccCCcC
Confidence 7788887765422 22234678998885 788887765
No 118
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=70.12 E-value=6.4 Score=26.33 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=33.4
Q ss_pred ccccccccccccCCeeEEcCC--CCcccHHhHHHHHhcCCCCCCCcccCccCCC
Q 028584 151 EECAICLERFKVGDTLVHLPC--AHRFHARCLLPWLATNAHNCPCCRMQILDPA 202 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~ 202 (207)
..|-.|-.++.....-..+ | ...||..|.+..| .+ .||.|-..++..+
T Consensus 6 pnCE~C~~dLp~~s~~A~I-CSfECTFC~~C~e~~l--~~-~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI-CSFECTFCADCAETML--NG-VCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceE-EeEeCcccHHHHHHHh--cC-cCcCCCCccccCC
Confidence 4577888888754312222 4 3469999999877 33 8999999887654
No 119
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=66.15 E-value=2.2 Score=41.16 Aligned_cols=23 Identities=35% Similarity=0.866 Sum_probs=17.5
Q ss_pred EcCCCCcccHHhHHHHHhcCCCCCCCc
Q 028584 168 HLPCAHRFHARCLLPWLATNAHNCPCC 194 (207)
Q Consensus 168 ~lpC~H~Fh~~Ci~~wl~~~~~~CP~C 194 (207)
-..|+++||..|+.. ... .||.|
T Consensus 534 C~~C~avfH~~C~~r---~s~-~CPrC 556 (580)
T KOG1829|consen 534 CSTCLAVFHKKCLRR---KSP-CCPRC 556 (580)
T ss_pred HHHHHHHHHHHHHhc---cCC-CCCch
Confidence 345999999999865 232 59999
No 120
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=65.12 E-value=6.7 Score=25.31 Aligned_cols=44 Identities=23% Similarity=0.559 Sum_probs=20.1
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC----CCCCCCcccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN----AHNCPCCRMQ 197 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~~CP~CR~~ 197 (207)
..|+|....+.. .++...|.|.-|.+ +..|+... .-.||+|..+
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 359998888864 45666799985533 33444422 2269999753
No 121
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.13 E-value=4.2 Score=35.95 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=29.3
Q ss_pred cccccccccccccccCCeeEEcC--CCCcccHHhHHHHHhcCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLP--CAHRFHARCLLPWLATNA 188 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~~ 188 (207)
.....|.+|.|.+++. ..+.-| =.|.||.-|-.+-++.+.
T Consensus 266 ~apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CCceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhhc
Confidence 3457899999999865 223333 279999999999888654
No 122
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=63.56 E-value=5.9 Score=25.94 Aligned_cols=42 Identities=31% Similarity=0.732 Sum_probs=19.7
Q ss_pred ccccccccccCC------eeEEcC-CCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 153 CAICLERFKVGD------TLVHLP-CAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 153 C~ICle~~~~~~------~~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
|--|+..|.... ....-| |++.||.+|=.- +...-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f-iHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF-IHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHT-TTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChh-hhccccCCcCCC
Confidence 556666666531 122223 999999999533 222223799884
No 123
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=63.34 E-value=3.5 Score=34.89 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=36.1
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
+.-..|.+|......+ +.--.|+-.+|..|+...++... .||.|..-+
T Consensus 179 dnlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~-~cphc~d~w 226 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRD-ICPHCGDLW 226 (235)
T ss_pred HHHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccC-cCCchhccc
Confidence 4556899999987643 22234778899999999999876 999995433
No 124
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=60.50 E-value=5.5 Score=25.51 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=19.7
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
|..|.+.+...+. +...-+..||..|+ +|-.|..+|..
T Consensus 1 C~~C~~~I~~~~~-~~~~~~~~~H~~Cf---------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEI-VIKAMGKFWHPECF---------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSE-EEEETTEEEETTTS---------BETTTTCBTTT
T ss_pred CCCCCCCccCcEE-EEEeCCcEEEcccc---------ccCCCCCccCC
Confidence 4555565553322 21234556666663 66666665543
No 125
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.28 E-value=6.3 Score=37.63 Aligned_cols=47 Identities=32% Similarity=0.753 Sum_probs=36.4
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
......|.||++.. . ....+|. |..|+..|+..+. +||.|+..+...
T Consensus 476 ~~~~~~~~~~~~~~-~---~~~~~~~---~~~~l~~~~~~~~-~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM-S---ARITPCS---HALCLRKWLYVQE-VCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH-H---hcccccc---chhHHHhhhhhcc-ccCCCchhhhcc
Confidence 34566799999987 2 2555677 8999999999887 999998776543
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=58.05 E-value=8.9 Score=34.45 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=33.9
Q ss_pred ccccccccccccCCeeEEcC--CCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLP--CAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..|+||.+..... ....+| |++..|..|+..-..... .||.||.+..-
T Consensus 250 ~s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~~~~~-~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTISDGDG-RCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccc-ccccccccccccchhhhhhcccccCC-CCCccCCcccc
Confidence 6799999987433 234455 677777777777666665 99999976643
No 127
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=56.70 E-value=0.86 Score=31.86 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=19.7
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|+.|...+... =++.+|..|-.... ... .||-|..++.
T Consensus 2 ~~CP~C~~~L~~~-------~~~~~C~~C~~~~~-~~a-~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-------GGHYHCEACQKDYK-KEA-FCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE-------TTEEEETTT--EEE-EEE-E-TTT-SB-E
T ss_pred CcCCCCCCccEEe-------CCEEECccccccce-ecc-cCCCcccHHH
Confidence 4588888876532 16667777765532 222 7888887764
No 128
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.63 E-value=4.9 Score=40.00 Aligned_cols=46 Identities=30% Similarity=0.599 Sum_probs=33.0
Q ss_pred cccccccccccccccC----CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 148 CEQEECAICLERFKVG----DTLVHLPCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
..+..|..|.+..... +.++.+.|+|.||..|+..-...++ |-.|-
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~~ 831 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIES 831 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChhh
Confidence 3455899999876532 4677888999999999976655542 65553
No 129
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=56.37 E-value=3.7 Score=37.80 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=0.0
Q ss_pred cccccccccccccc-------------C---CeeEEcCCCCcccHHhHHHHHhcCC--------CCCCCcccCcc
Q 028584 149 EQEECAICLERFKV-------------G---DTLVHLPCAHRFHARCLLPWLATNA--------HNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~-------------~---~~~~~lpC~H~Fh~~Ci~~wl~~~~--------~~CP~CR~~l~ 199 (207)
...+|++|+..-.. . -.-...||||+.-.....-|-+..- ..||+|-..|.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 47789999975211 0 1233568999988888888855321 27999987775
No 130
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=55.97 E-value=11 Score=34.09 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=29.8
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
...|-.|..........+--.|.+.||.+|-.-.-..- ..||.|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesL-h~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESL-HNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhh-hcCCCcCC
Confidence 34488887666544333334599999999954433332 37999964
No 131
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=55.00 E-value=6.9 Score=24.62 Aligned_cols=43 Identities=28% Similarity=0.663 Sum_probs=26.8
Q ss_pred ccccccccccCCeeEEcCCCCcccHHhHHHHHhc-----CCCCCCCcc
Q 028584 153 CAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT-----NAHNCPCCR 195 (207)
Q Consensus 153 C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~~~~CP~CR 195 (207)
|.||......++.+.=-.|...||..|+..-... ....||.|+
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 8889884443333333359999999998654331 123688775
No 132
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=54.16 E-value=7.4 Score=26.19 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=17.9
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHH
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWL 184 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl 184 (207)
.+...|.+|...|..-..-.+- .||++||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3567799999999643222222 399999999986543
No 133
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.96 E-value=14 Score=28.19 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=30.7
Q ss_pred ccccccccccccCC----------eeE-EcCCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 151 EECAICLERFKVGD----------TLV-HLPCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 151 ~~C~ICle~~~~~~----------~~~-~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
..|--|+..|.... ... --.|.+.||.+|-..+-+.-. .||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh-~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH-CCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc-CCcCCC
Confidence 45999999886421 011 124999999999777665544 899995
No 134
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=52.53 E-value=9.1 Score=33.50 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=33.1
Q ss_pred ccccccccccccccCCeeEEc----CCCCcccHHhHHHHHhc-CC-------CCCCCcccC
Q 028584 149 EQEECAICLERFKVGDTLVHL----PCAHRFHARCLLPWLAT-NA-------HNCPCCRMQ 197 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l----pC~H~Fh~~Ci~~wl~~-~~-------~~CP~CR~~ 197 (207)
....|-+|.+.+.+.+..+.. .|.-.+|..|+..-+.. .. ..||.|+..
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 335799999998544333332 28889999999884332 11 279999864
No 135
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=52.35 E-value=9 Score=26.48 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=9.3
Q ss_pred cccHHhHHHHHhc
Q 028584 174 RFHARCLLPWLAT 186 (207)
Q Consensus 174 ~Fh~~Ci~~wl~~ 186 (207)
-||..||.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999864
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.57 E-value=17 Score=25.73 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=30.6
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccCCC
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILDPA 202 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~ 202 (207)
.|--|-.++..+..-..+ .=.+.||.+|.+.-| +. .||.|-..++..+
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g-~CPnCGGelv~RP 55 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HG-LCPNCGGELVARP 55 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cC-cCCCCCchhhcCc
Confidence 466677777643211111 235789999998755 33 8999988776543
No 137
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=48.83 E-value=12 Score=31.06 Aligned_cols=38 Identities=37% Similarity=0.845 Sum_probs=24.1
Q ss_pred ccccccccc-----cccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcc
Q 028584 151 EECAICLER-----FKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCR 195 (207)
Q Consensus 151 ~~C~ICle~-----~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR 195 (207)
..|-||-.. |.. +.++.- .|+.+||..|+.. . .||.|-
T Consensus 153 fiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~-~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----K-SCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----C-CCCCcH
Confidence 457777642 221 123333 4999999999862 3 799994
No 138
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.71 E-value=14 Score=32.19 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.5
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT 186 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~ 186 (207)
+-+-|++|+..+.++ +..|=||+|+..||-+.+..
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHHH
Confidence 446699999999876 78889999999999888654
No 139
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.56 E-value=24 Score=25.24 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=21.4
Q ss_pred ccccccccccccccC---CeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVG---DTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~---~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|-||-+.+-.. +..+. ..|+--.|..|.+-=.+..++.||.|+....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 446699999886532 22221 2477788999997766666569999987653
No 140
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=45.31 E-value=7.4 Score=38.38 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=30.8
Q ss_pred ccccccccccccccCC-----ee--EEcCCCCcccHHhHHHHHh---------cCCCCCCCcccCc
Q 028584 149 EQEECAICLERFKVGD-----TL--VHLPCAHRFHARCLLPWLA---------TNAHNCPCCRMQI 198 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~-----~~--~~lpC~H~Fh~~Ci~~wl~---------~~~~~CP~CR~~l 198 (207)
...+|.||.|.=.+.+ ++ -.-.|...||..|....-. .+.+.|-+|+..+
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 3456999998844322 11 1224888899999876411 1123799997544
No 141
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.75 E-value=26 Score=26.03 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=28.5
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT 186 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~ 186 (207)
..|.||-..+..++.....+ .-..|++|+..-..+
T Consensus 7 wkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 45999999999998888888 666899999775443
No 142
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=43.54 E-value=20 Score=26.79 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=18.7
Q ss_pred CCcccHHhHHHHHhcCC--------CCCCCccc
Q 028584 172 AHRFHARCLLPWLATNA--------HNCPCCRM 196 (207)
Q Consensus 172 ~H~Fh~~Ci~~wl~~~~--------~~CP~CR~ 196 (207)
.-.||..||..++.... -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 66799999988765421 26999985
No 143
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=4.1 Score=35.39 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=37.6
Q ss_pred ccccccccccccccC---CeeEEcC--------CCCcccHHhHHHHHhcCCCCCCCcccC
Q 028584 149 EQEECAICLERFKVG---DTLVHLP--------CAHRFHARCLLPWLATNAHNCPCCRMQ 197 (207)
Q Consensus 149 ~~~~C~ICle~~~~~---~~~~~lp--------C~H~Fh~~Ci~~wl~~~~~~CP~CR~~ 197 (207)
....|.||...+... .....+. |+|..|..|+..-+......||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 446799999998832 2344556 999999999999877654589999864
No 144
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.01 E-value=3.7 Score=35.91 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred cccccccccccccccCCeeEEcC---CCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 148 CEQEECAICLERFKVGDTLVHLP---CAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
+....|+||-..-... .+..-. -.+.+|..|-..|-.... .||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~-~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRI-KCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TT-S-TTT--
T ss_pred ccCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCC-CCcCCCC
Confidence 4456899998763221 111110 245688899999966665 8999954
No 145
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.94 E-value=6 Score=31.26 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=25.4
Q ss_pred cccccccccccc-cccCCeeEEcCCCCcccHHhHHHHHhcCCC---CCCCccc
Q 028584 148 CEQEECAICLER-FKVGDTLVHLPCAHRFHARCLLPWLATNAH---NCPCCRM 196 (207)
Q Consensus 148 ~~~~~C~ICle~-~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~---~CP~CR~ 196 (207)
.++.+|.||+.. |.++-.-.-.=|.-.||..|--+.-...++ .|-+|+.
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 467889999974 544310000113444666665443222222 6888864
No 146
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=38.86 E-value=17 Score=35.13 Aligned_cols=37 Identities=38% Similarity=0.637 Sum_probs=26.0
Q ss_pred cccccccccccccccC-----C-----eeEEcCCCCcccHHhHHHHH
Q 028584 148 CEQEECAICLERFKVG-----D-----TLVHLPCAHRFHARCLLPWL 184 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~-----~-----~~~~lpC~H~Fh~~Ci~~wl 184 (207)
.....|+||.+.|.+- + ..+.+.-|-+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 5667899999998751 0 12334358899999997653
No 147
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=32 Score=30.02 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=34.0
Q ss_pred ccccccccccccccCCe-eEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDT-LVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
-...|+|---.|..... ....+|||+|-..-+.+.- .. .|++|.+.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as-~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--AS-VCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hc-cccccCCcccc
Confidence 44579887766653322 3345799999998887753 33 89999987654
No 148
>PLN02189 cellulose synthase
Probab=37.60 E-value=34 Score=35.45 Aligned_cols=51 Identities=24% Similarity=0.542 Sum_probs=35.4
Q ss_pred cccccccccccccc---CCeeEEcC-CCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKV---GDTLVHLP-CAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~---~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|.||-+++.. ++.-+.-. |+--.|..|.+-=.+..++.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 33579999998753 33333333 77779999996655555569999998664
No 149
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.71 E-value=11 Score=35.11 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=29.9
Q ss_pred ccccccccccccccccCCee---EE--cCCCCcccHHhHHHHHhcCC
Q 028584 147 ACEQEECAICLERFKVGDTL---VH--LPCAHRFHARCLLPWLATNA 188 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~---~~--lpC~H~Fh~~Ci~~wl~~~~ 188 (207)
..+...|+.|...+...... .. .+|.|.||+.|+..|-....
T Consensus 223 ~~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~~ 269 (444)
T KOG1815|consen 223 LANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHGS 269 (444)
T ss_pred hccCccCCCcccchhccCCccccccccCCcCCeeceeeecccccccc
Confidence 44555699999988765321 22 24999999999999877643
No 150
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=36.49 E-value=22 Score=22.69 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=23.1
Q ss_pred ccccccccccccCCeeEE-cCCCCcccHHhHHHHHh
Q 028584 151 EECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLA 185 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~ 185 (207)
..|.+|...|..-..-.. ..|+++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 458899887764321112 23999999999876544
No 151
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=35.20 E-value=36 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=25.4
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHh
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLA 185 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 185 (207)
.|.||-.++..++....++ +-..|+.|+..-..
T Consensus 4 kC~iCg~~I~~gqlFTF~~-kG~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTK-KGPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEec-CCcEeHHHHHHHHh
Confidence 5999999999886555554 46789999977544
No 152
>PF14353 CpXC: CpXC protein
Probab=34.81 E-value=42 Score=25.41 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=25.4
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--CCCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--HNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l~~ 200 (207)
.+|+.|...|... +...-.-.....-....+...- .+||.|...+..
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 4699999888654 2111122223334444443222 289999876643
No 153
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.57 E-value=15 Score=32.82 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=36.5
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
....|.||+..+..+. ..-.|.|.|+.-|...|....+ .||.|+..+
T Consensus 104 ~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~-~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGN-DCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhh-ccchhhcCc
Confidence 4567999999887552 1223999999999999999887 899887644
No 154
>PLN02436 cellulose synthase A
Probab=34.24 E-value=41 Score=34.99 Aligned_cols=50 Identities=22% Similarity=0.536 Sum_probs=34.8
Q ss_pred ccccccccccccc---CCeeEEcC-CCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKV---GDTLVHLP-CAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~---~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|.||-+++.. ++.-+.-. |+--.|..|.+-=.+..++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3469999998643 34333333 77779999996655555569999998664
No 155
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=33.77 E-value=30 Score=28.20 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=33.9
Q ss_pred hhhhchhhhccccceeecccCCCCccccccc-ccccccccccccccccccccCCeeEEcCCCCcccHHhHHHH
Q 028584 112 SVLMNINKSTVLHTQVFGSKKSGSKRFSWSK-LSWKACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPW 183 (207)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~w 183 (207)
+-+.+...+-.+|+..-+..++-.+.+.+.. ......+-..|++|-.+ .=.|..|..|....
T Consensus 54 ~~l~~n~illAVPK~r~S~eK~~kRk~~~~~k~Lk~k~nl~~CP~CGh~----------k~a~~LC~~Cy~kV 116 (176)
T KOG4080|consen 54 SMLIDNSILLAVPKKRTSKEKKVKRKFLYTRKLLKPKDNLNTCPACGHI----------KPAHTLCDYCYAKV 116 (176)
T ss_pred ccccccceEEeccccccchhhhhhhhccCccccccchhccccCcccCcc----------ccccccHHHHHHHH
Confidence 3455555566677765555554444444444 33344556789988654 22345566666443
No 156
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=32.55 E-value=37 Score=31.02 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=17.1
Q ss_pred cccccccccccccccccCCeeEEcCC
Q 028584 146 KACEQEECAICLERFKVGDTLVHLPC 171 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~~~~~lpC 171 (207)
++..++.|++|-+... +-....|.|
T Consensus 11 dedl~ElCPVCGDkVS-GYHYGLLTC 35 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVS-GYHYGLLTC 35 (475)
T ss_pred ccccccccccccCccc-cceeeeeeh
Confidence 4556788999998865 445555654
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=30.43 E-value=43 Score=29.43 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=27.5
Q ss_pred ccccccccccccccCCeeEE-cCCC-CcccHHhHHHHHhcCCCCCCC
Q 028584 149 EQEECAICLERFKVGDTLVH-LPCA-HRFHARCLLPWLATNAHNCPC 193 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~-lpC~-H~Fh~~Ci~~wl~~~~~~CP~ 193 (207)
.-..|.||++....+-.-.. |--. =.-|.+|.++|-...+..||.
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 34569999988765521111 2122 246799999995544448983
No 159
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.53 E-value=33 Score=20.55 Aligned_cols=13 Identities=46% Similarity=1.014 Sum_probs=8.9
Q ss_pred cccccccccccCC
Q 028584 152 ECAICLERFKVGD 164 (207)
Q Consensus 152 ~C~ICle~~~~~~ 164 (207)
.|+-|...|..++
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 5777777776653
No 160
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=27.37 E-value=14 Score=32.77 Aligned_cols=37 Identities=32% Similarity=0.654 Sum_probs=28.1
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA 188 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~ 188 (207)
.|.+|++.|..+.......|...||..|+-.|+.+..
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 7999999997644445555666899999999987654
No 161
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.46 E-value=35 Score=25.15 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=11.1
Q ss_pred cccHHhHHHHHhc
Q 028584 174 RFHARCLLPWLAT 186 (207)
Q Consensus 174 ~Fh~~Ci~~wl~~ 186 (207)
-||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 162
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.18 E-value=23 Score=22.88 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=4.5
Q ss_pred CCCCcccCcc
Q 028584 190 NCPCCRMQIL 199 (207)
Q Consensus 190 ~CP~CR~~l~ 199 (207)
.||+|..+|.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6888877664
No 163
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.77 E-value=46 Score=23.30 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=21.3
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHH
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLP 182 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~ 182 (207)
...|.+|....-..-....-.|...||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 356999997732211222334899999999854
No 164
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.88 E-value=47 Score=24.27 Aligned_cols=32 Identities=28% Similarity=0.595 Sum_probs=21.0
Q ss_pred cccccccccccccCCeeE--EcCCCCcccHHhHHHH
Q 028584 150 QEECAICLERFKVGDTLV--HLPCAHRFHARCLLPW 183 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~--~lpC~H~Fh~~Ci~~w 183 (207)
...|.||.... +-.+. .-.|...||..|....
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence 45799999873 31111 1237889999998653
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.85 E-value=1.3e+02 Score=30.47 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=30.1
Q ss_pred ccccccccccccccccC--------CeeEEc--CCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVG--------DTLVHL--PCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~--------~~~~~l--pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...+..|+-|...|..- +.+..+ .|.|.-|..=|.. .+ .||+|...+.
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~-~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YN-CCPLCHSMES 1185 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cc-cCccccChhh
Confidence 34667788888887541 222333 2888777655533 34 8999987553
No 166
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=24.58 E-value=23 Score=22.92 Aligned_cols=19 Identities=37% Similarity=0.913 Sum_probs=14.6
Q ss_pred eeEEc-CCCCcccHHhHHHH
Q 028584 165 TLVHL-PCAHRFHARCLLPW 183 (207)
Q Consensus 165 ~~~~l-pC~H~Fh~~Ci~~w 183 (207)
..+.- .|++.||..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34444 48999999998887
No 167
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.13 E-value=11 Score=20.45 Aligned_cols=6 Identities=50% Similarity=1.370 Sum_probs=2.6
Q ss_pred CCCCcc
Q 028584 190 NCPCCR 195 (207)
Q Consensus 190 ~CP~CR 195 (207)
.||.|-
T Consensus 15 fC~~CG 20 (23)
T PF13240_consen 15 FCPNCG 20 (23)
T ss_pred chhhhC
Confidence 344443
No 168
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=23.99 E-value=27 Score=37.43 Aligned_cols=51 Identities=27% Similarity=0.572 Sum_probs=37.4
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCC---CCCCcccCc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAH---NCPCCRMQI 198 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~---~CP~CR~~l 198 (207)
.....|.||.........+.-..|...||..|+.+-+..... .||-|+..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 356779999998775433333348889999999998776543 799998654
No 169
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.87 E-value=36 Score=30.40 Aligned_cols=45 Identities=16% Similarity=0.408 Sum_probs=28.9
Q ss_pred ccccccccccccccCCeeEEc--C--CCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHL--P--CAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l--p--C~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
....|+||-..=... ++.+ . =.+.+|..|-..|-.... .||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~-~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRV-KCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCc-cCCCCCC
Confidence 456799998763211 1111 1 234577789999977666 8999964
No 170
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.32 E-value=71 Score=17.89 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=9.3
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhH
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCL 180 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci 180 (207)
.|.+|.+.+.....-.=..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 37788877654212223458888888885
No 171
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.29 E-value=91 Score=32.57 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=34.3
Q ss_pred cccccccccccccc---CCeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKV---GDTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~---~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|-||-+++.. ++.-+. -.|+--.|..|.+-=-+..++.||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 33479999998654 232222 2377779999995544455559999987664
No 172
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.20 E-value=48 Score=24.95 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=26.3
Q ss_pred cccccccccccccc--CCeeEEcCCCCcccHHhHHHHHhcCCC--CCCCcc
Q 028584 149 EQEECAICLERFKV--GDTLVHLPCAHRFHARCLLPWLATNAH--NCPCCR 195 (207)
Q Consensus 149 ~~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~~--~CP~CR 195 (207)
.+..|.+|...|.- +....-..|.|.+|..|-.. ..+.. .|.+|.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~ 101 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQ 101 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhH
Confidence 45679999987532 22344456999999999654 11111 477774
No 173
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.26 E-value=72 Score=18.45 Aligned_cols=7 Identities=43% Similarity=1.269 Sum_probs=5.6
Q ss_pred CCCCccc
Q 028584 190 NCPCCRM 196 (207)
Q Consensus 190 ~CP~CR~ 196 (207)
.||+|.+
T Consensus 19 ~CP~Cg~ 25 (33)
T cd00350 19 VCPVCGA 25 (33)
T ss_pred cCcCCCC
Confidence 8999965
No 174
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=37 Score=23.04 Aligned_cols=33 Identities=21% Similarity=0.536 Sum_probs=17.6
Q ss_pred CCeeEEc--CCCCcccHHhHHHHHhc-CCCCCCCccc
Q 028584 163 GDTLVHL--PCAHRFHARCLLPWLAT-NAHNCPCCRM 196 (207)
Q Consensus 163 ~~~~~~l--pC~H~Fh~~Ci~~wl~~-~~~~CP~CR~ 196 (207)
+++.... |||..|-..- +..... ....||.|.-
T Consensus 17 e~~~ftyPCPCGDRFeIsL-eDl~~GE~VArCPSCSL 52 (67)
T COG5216 17 EEKTFTYPCPCGDRFEISL-EDLRNGEVVARCPSCSL 52 (67)
T ss_pred CCceEEecCCCCCEeEEEH-HHhhCCceEEEcCCceE
Confidence 3344444 4788887643 232211 1137999964
No 175
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=22.07 E-value=29 Score=30.63 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCCcccHHhHHHHHhcCC---CCCCCcccCccCCCC
Q 028584 171 CAHRFHARCLLPWLATNA---HNCPCCRMQILDPAA 203 (207)
Q Consensus 171 C~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l~~~~~ 203 (207)
=.|.||..|..+...... ..||.|...+.+...
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~d 144 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEHFPRID 144 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCccCCCCC
Confidence 578888888877654432 279999887766543
No 176
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.56 E-value=22 Score=31.73 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=28.1
Q ss_pred ccccccccccccccCCeeEEc--C--CCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHL--P--CAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l--p--C~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
....|+||-..=... .+... . =.+.+|..|-..|-.... .||.|-.
T Consensus 183 ~~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~-~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRV-KCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCc-cCCCCCC
Confidence 345799998763211 01110 1 234567789999976665 8999964
No 177
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.27 E-value=95 Score=32.31 Aligned_cols=51 Identities=20% Similarity=0.481 Sum_probs=35.2
Q ss_pred cccccccccccccc---CCeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKV---GDTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~---~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|.||-+++.. ++.-+. -.|+--.|..|.+-=.+..++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 44669999998654 232222 2377779999996555555569999987664
No 178
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.21 E-value=30 Score=19.33 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.1
Q ss_pred cccccccc
Q 028584 153 CAICLERF 160 (207)
Q Consensus 153 C~ICle~~ 160 (207)
|+-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555544
No 179
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.58 E-value=60 Score=20.87 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=11.1
Q ss_pred CCCcccHHhHHHHHhcCCCCCCCc
Q 028584 171 CAHRFHARCLLPWLATNAHNCPCC 194 (207)
Q Consensus 171 C~H~Fh~~Ci~~wl~~~~~~CP~C 194 (207)
|+|.|-..=-.+- .... .||.|
T Consensus 34 Cgh~w~~~v~~R~-~~~~-~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT-RRGK-GCPYC 55 (55)
T ss_pred CCCeeEccHhhhc-cCCC-CCCCC
Confidence 5665544332222 2333 79988
No 180
>PLN02195 cellulose synthase A
Probab=20.48 E-value=1.2e+02 Score=31.45 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=34.4
Q ss_pred cccccccccccccC---CeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVG---DTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~---~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|.||-+.+... +.-+. -.|+--.|..|.+-=-+..++.||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 35699999876542 32222 2488889999995544555558999998765
Done!