Query 028584
Match_columns 207
No_of_seqs 220 out of 2207
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 23:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.7E-15 9.1E-20 108.6 6.7 76 112-200 14-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.1E-15 1.1E-19 104.1 5.4 52 149-201 22-73 (75)
3 2ep4_A Ring finger protein 24; 99.5 3E-14 1E-18 98.6 5.6 54 148-202 13-66 (74)
4 2kiz_A E3 ubiquitin-protein li 99.5 4.5E-14 1.5E-18 96.4 6.2 56 147-203 11-66 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.5 2.9E-14 9.8E-19 93.1 3.3 50 149-199 4-54 (55)
6 2ect_A Ring finger protein 126 99.4 8.8E-14 3E-18 97.1 4.9 53 148-201 13-65 (78)
7 2ecm_A Ring finger and CHY zin 99.4 4.2E-13 1.4E-17 87.4 4.7 50 149-199 4-54 (55)
8 1v87_A Deltex protein 2; ring- 99.4 6.5E-13 2.2E-17 99.1 5.4 54 149-202 24-96 (114)
9 3ng2_A RNF4, snurf, ring finge 99.3 4.5E-13 1.5E-17 91.5 4.0 53 148-201 8-64 (71)
10 2ea6_A Ring finger protein 4; 99.3 5.5E-13 1.9E-17 90.4 4.3 52 148-200 13-68 (69)
11 2ecl_A Ring-box protein 2; RNF 99.3 8.2E-13 2.8E-17 93.5 4.2 51 149-200 14-76 (81)
12 2xeu_A Ring finger protein 4; 99.3 1.2E-12 4E-17 87.4 3.9 52 149-201 2-57 (64)
13 2djb_A Polycomb group ring fin 99.3 3.1E-12 1E-16 88.1 5.9 50 148-201 13-63 (72)
14 3dpl_R Ring-box protein 1; ubi 99.3 2.2E-12 7.6E-17 96.2 4.3 50 149-199 36-100 (106)
15 2d8s_A Cellular modulator of i 99.3 3.4E-12 1.2E-16 90.6 4.9 55 146-201 11-71 (80)
16 2d8t_A Dactylidin, ring finger 99.3 1.1E-12 3.9E-17 90.1 2.2 48 148-199 13-60 (71)
17 2ysl_A Tripartite motif-contai 99.3 4.9E-12 1.7E-16 86.9 5.2 52 147-201 17-70 (73)
18 1chc_A Equine herpes virus-1 r 99.3 3.2E-12 1.1E-16 86.7 4.0 49 149-200 4-52 (68)
19 2yur_A Retinoblastoma-binding 99.3 4.9E-12 1.7E-16 87.7 5.0 51 148-201 13-65 (74)
20 2ecy_A TNF receptor-associated 99.2 4.4E-12 1.5E-16 85.8 4.4 51 148-201 13-63 (66)
21 2csy_A Zinc finger protein 183 99.2 4.6E-12 1.6E-16 89.1 4.5 48 148-199 13-60 (81)
22 2ct2_A Tripartite motif protei 99.2 7E-12 2.4E-16 88.9 5.4 54 148-201 13-69 (88)
23 4ayc_A E3 ubiquitin-protein li 99.2 2.7E-12 9.1E-17 99.4 2.6 48 149-200 52-99 (138)
24 2ecn_A Ring finger protein 141 99.2 2.7E-12 9.1E-17 87.7 1.6 49 148-201 13-61 (70)
25 1t1h_A Gspef-atpub14, armadill 99.2 1.1E-11 3.6E-16 86.4 4.1 50 148-200 6-55 (78)
26 3lrq_A E3 ubiquitin-protein li 99.2 7.1E-12 2.4E-16 91.9 3.4 50 148-200 20-70 (100)
27 2ysj_A Tripartite motif-contai 99.2 2.4E-11 8.3E-16 81.3 5.7 45 147-194 17-63 (63)
28 2ecw_A Tripartite motif-contai 99.2 2.3E-11 8E-16 85.2 5.5 51 148-201 17-72 (85)
29 3fl2_A E3 ubiquitin-protein li 99.2 1.5E-11 5.2E-16 93.2 4.8 50 148-200 50-99 (124)
30 3ztg_A E3 ubiquitin-protein li 99.2 2.2E-11 7.6E-16 87.4 5.4 50 147-199 10-61 (92)
31 1g25_A CDK-activating kinase a 99.2 2.1E-11 7.2E-16 82.2 4.7 53 149-201 2-56 (65)
32 4a0k_B E3 ubiquitin-protein li 99.2 4E-12 1.4E-16 96.5 0.3 54 144-199 43-111 (117)
33 2ecv_A Tripartite motif-contai 99.1 2.6E-11 9E-16 85.0 4.2 50 148-201 17-72 (85)
34 2egp_A Tripartite motif-contai 99.1 8.1E-12 2.8E-16 86.9 1.0 50 148-200 10-65 (79)
35 2y43_A E3 ubiquitin-protein li 99.1 2.5E-11 8.7E-16 88.4 3.3 49 148-200 20-69 (99)
36 4ap4_A E3 ubiquitin ligase RNF 99.1 3.2E-11 1.1E-15 91.1 3.9 52 149-201 6-61 (133)
37 2ckl_A Polycomb group ring fin 99.1 3.4E-11 1.2E-15 89.1 3.9 50 147-200 12-62 (108)
38 1z6u_A NP95-like ring finger p 99.1 6.3E-11 2.1E-15 93.2 4.5 50 149-201 77-126 (150)
39 2ecj_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 78.0 2.9 44 148-194 13-58 (58)
40 3l11_A E3 ubiquitin-protein li 99.1 2.1E-11 7.3E-16 91.1 0.7 49 148-199 13-61 (115)
41 2ckl_B Ubiquitin ligase protei 99.1 6.1E-11 2.1E-15 94.0 3.2 51 148-200 52-102 (165)
42 2ct0_A Non-SMC element 1 homol 99.0 1.8E-10 6.1E-15 80.6 4.4 51 147-199 12-63 (74)
43 1rmd_A RAG1; V(D)J recombinati 99.0 1.5E-10 5.1E-15 86.6 4.2 50 148-200 21-70 (116)
44 3hct_A TNF receptor-associated 99.0 1.1E-10 3.8E-15 87.8 3.4 50 148-200 16-65 (118)
45 1jm7_A BRCA1, breast cancer ty 99.0 1.2E-10 4.2E-15 86.1 3.2 50 149-201 20-71 (112)
46 3knv_A TNF receptor-associated 99.0 1.4E-10 4.8E-15 90.4 2.3 50 147-199 28-77 (141)
47 2kr4_A Ubiquitin conjugation f 99.0 4.1E-10 1.4E-14 80.4 4.1 48 148-199 12-59 (85)
48 1e4u_A Transcriptional repress 99.0 2.7E-10 9.2E-15 80.3 3.0 53 148-201 9-63 (78)
49 4ap4_A E3 ubiquitin ligase RNF 99.0 3.2E-10 1.1E-14 85.6 3.5 52 148-200 70-125 (133)
50 1wgm_A Ubiquitin conjugation f 98.9 9.6E-10 3.3E-14 80.6 5.3 49 148-200 20-69 (98)
51 2kre_A Ubiquitin conjugation f 98.9 5.1E-10 1.7E-14 82.4 3.3 49 148-200 27-75 (100)
52 2vje_A E3 ubiquitin-protein li 98.9 7.8E-10 2.7E-14 74.8 2.9 47 149-199 7-56 (64)
53 1bor_A Transcription factor PM 98.9 4.8E-10 1.6E-14 73.7 1.5 48 148-202 4-51 (56)
54 2c2l_A CHIP, carboxy terminus 98.8 1.4E-09 4.9E-14 91.6 3.9 50 147-199 205-254 (281)
55 1jm7_B BARD1, BRCA1-associated 98.8 5E-10 1.7E-14 84.1 0.6 47 148-200 20-67 (117)
56 2vje_B MDM4 protein; proto-onc 98.8 1.7E-09 5.6E-14 72.9 2.8 49 149-199 6-55 (63)
57 4ic3_A E3 ubiquitin-protein li 98.8 1.1E-09 3.6E-14 76.0 1.4 43 149-199 23-66 (74)
58 3hcs_A TNF receptor-associated 98.8 2.5E-09 8.5E-14 85.0 3.4 51 147-200 15-65 (170)
59 2y1n_A E3 ubiquitin-protein li 98.8 3.1E-09 1.1E-13 95.3 4.2 48 150-200 332-379 (389)
60 2yu4_A E3 SUMO-protein ligase 98.7 6.1E-09 2.1E-13 75.5 3.6 46 149-197 6-59 (94)
61 2f42_A STIP1 homology and U-bo 98.7 1.1E-08 3.8E-13 82.8 4.2 50 147-199 103-152 (179)
62 2ecg_A Baculoviral IAP repeat- 98.7 4.2E-09 1.4E-13 73.0 1.3 44 149-200 24-68 (75)
63 2ea5_A Cell growth regulator w 98.6 2.7E-08 9.2E-13 68.0 3.9 46 147-200 12-58 (68)
64 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.1E-08 3.6E-13 90.4 0.8 52 148-199 306-372 (381)
65 1wim_A KIAA0161 protein; ring 98.5 4.3E-08 1.5E-12 70.6 3.4 49 149-197 4-61 (94)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.6E-08 2.6E-12 64.4 3.7 50 147-199 3-58 (60)
67 2yho_A E3 ubiquitin-protein li 98.5 2.8E-08 9.7E-13 69.8 1.0 43 149-199 17-60 (79)
68 3t6p_A Baculoviral IAP repeat- 98.3 9.3E-08 3.2E-12 84.6 1.0 44 148-199 293-337 (345)
69 3htk_C E3 SUMO-protein ligase 98.3 2.9E-07 9.9E-12 78.5 3.3 50 148-199 179-231 (267)
70 2bay_A PRE-mRNA splicing facto 98.2 4.7E-07 1.6E-11 60.6 2.3 45 151-199 4-49 (61)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.3E-06 4.6E-11 63.9 4.3 46 152-199 3-48 (101)
72 3nw0_A Non-structural maintena 97.5 0.0001 3.6E-09 61.8 5.3 49 149-200 179-229 (238)
73 2ko5_A Ring finger protein Z; 94.9 0.0046 1.6E-07 44.6 0.1 46 149-200 27-73 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.4 0.025 8.4E-07 40.3 3.0 35 149-183 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.2 0.061 2.1E-06 36.1 2.9 50 148-200 10-62 (66)
76 1wil_A KIAA1045 protein; ring 92.3 0.081 2.8E-06 37.3 2.6 33 147-183 12-47 (89)
77 2l5u_A Chromodomain-helicase-D 85.4 0.35 1.2E-05 31.6 1.6 48 147-197 8-58 (61)
78 2kgg_A Histone demethylase jar 84.0 0.93 3.2E-05 28.4 3.2 44 152-195 4-52 (52)
79 2k16_A Transcription initiatio 83.3 0.22 7.6E-06 33.7 -0.1 50 149-199 17-70 (75)
80 1we9_A PHD finger family prote 82.5 0.6 2E-05 30.4 1.8 49 148-196 4-57 (64)
81 1wep_A PHF8; structural genomi 82.4 0.97 3.3E-05 30.8 3.0 49 149-198 11-64 (79)
82 1wem_A Death associated transc 82.4 0.42 1.4E-05 32.4 1.1 48 150-199 16-72 (76)
83 2lv9_A Histone-lysine N-methyl 79.6 0.47 1.6E-05 33.9 0.6 46 149-196 27-75 (98)
84 1f62_A Transcription factor WS 79.5 0.74 2.5E-05 28.6 1.4 44 152-196 2-49 (51)
85 1xwh_A Autoimmune regulator; P 79.2 0.3 1E-05 32.4 -0.6 51 148-201 6-59 (66)
86 2vpb_A Hpygo1, pygopus homolog 78.5 1.6 5.3E-05 28.9 2.9 33 148-180 6-40 (65)
87 3m62_A Ubiquitin conjugation f 77.2 1.8 6.2E-05 42.8 4.0 49 147-199 888-937 (968)
88 1fp0_A KAP-1 corepressor; PHD 77.0 1 3.5E-05 31.8 1.7 47 147-197 22-72 (88)
89 3u5n_A E3 ubiquitin-protein li 76.0 0.56 1.9E-05 37.8 0.1 47 148-198 5-55 (207)
90 1mm2_A MI2-beta; PHD, zinc fin 75.0 0.43 1.5E-05 31.1 -0.7 48 147-197 6-56 (61)
91 2e6r_A Jumonji/ARID domain-con 73.7 0.3 1E-05 34.7 -1.9 51 146-197 12-66 (92)
92 2ri7_A Nucleosome-remodeling f 73.6 0.88 3E-05 35.4 0.6 48 148-196 6-58 (174)
93 1wew_A DNA-binding family prot 72.5 0.89 3E-05 31.0 0.4 49 148-198 14-73 (78)
94 2puy_A PHD finger protein 21A; 70.7 0.25 8.6E-06 32.0 -2.7 48 149-199 4-54 (60)
95 1weu_A Inhibitor of growth fam 68.9 2.2 7.4E-05 30.2 1.8 47 147-198 33-86 (91)
96 2yql_A PHD finger protein 21A; 68.8 0.36 1.2E-05 30.9 -2.2 45 148-195 7-54 (56)
97 2rsd_A E3 SUMO-protein ligase 68.1 0.48 1.6E-05 31.5 -1.8 46 149-196 9-64 (68)
98 1z60_A TFIIH basal transcripti 67.8 2 6.7E-05 28.1 1.2 42 151-194 16-58 (59)
99 2cs3_A Protein C14ORF4, MY039 67.5 3.2 0.00011 28.9 2.3 38 149-187 14-53 (93)
100 2lbm_A Transcriptional regulat 67.1 5.2 0.00018 30.6 3.7 47 147-196 60-116 (142)
101 1wen_A Inhibitor of growth fam 66.6 3.2 0.00011 27.8 2.2 48 146-198 12-66 (71)
102 2yt5_A Metal-response element- 66.4 2.4 8E-05 27.6 1.5 50 148-197 4-61 (66)
103 3v43_A Histone acetyltransfera 66.1 5.1 0.00017 28.9 3.4 47 149-195 4-62 (112)
104 1weo_A Cellulose synthase, cat 65.6 8 0.00027 27.3 4.1 51 149-199 15-69 (93)
105 4gne_A Histone-lysine N-methyl 65.6 4.3 0.00015 29.5 2.9 48 147-200 12-65 (107)
106 2xb1_A Pygopus homolog 2, B-ce 65.3 2.9 0.0001 30.1 1.9 49 151-199 4-63 (105)
107 2ysm_A Myeloid/lymphoid or mix 65.3 1.5 5E-05 31.7 0.3 48 148-195 5-55 (111)
108 3v43_A Histone acetyltransfera 64.1 1.7 5.8E-05 31.6 0.4 46 151-196 62-111 (112)
109 1iml_A CRIP, cysteine rich int 63.6 2.9 0.0001 27.5 1.5 43 149-196 26-69 (76)
110 2l43_A N-teminal domain from h 63.1 6.6 0.00022 27.3 3.4 52 147-198 22-76 (88)
111 2cu8_A Cysteine-rich protein 2 61.8 4 0.00014 26.8 2.0 39 151-200 10-48 (76)
112 3asl_A E3 ubiquitin-protein li 61.0 2 6.9E-05 28.7 0.3 44 152-196 20-68 (70)
113 2e6s_A E3 ubiquitin-protein li 60.4 1.8 6.3E-05 29.5 0.0 44 152-196 28-76 (77)
114 1wev_A Riken cDNA 1110020M19; 59.5 0.77 2.6E-05 32.2 -2.1 51 149-199 15-74 (88)
115 1joc_A EEA1, early endosomal a 58.5 6.2 0.00021 29.3 2.7 34 149-182 68-102 (125)
116 2d8v_A Zinc finger FYVE domain 58.1 5 0.00017 26.8 1.8 32 148-183 6-38 (67)
117 3t7l_A Zinc finger FYVE domain 56.2 7.5 0.00026 27.0 2.7 35 149-183 19-54 (90)
118 1z2q_A LM5-1; membrane protein 56.2 6.9 0.00023 26.8 2.4 36 148-183 19-55 (84)
119 2dj7_A Actin-binding LIM prote 55.8 5.9 0.0002 26.5 2.0 40 149-199 14-53 (80)
120 2yw8_A RUN and FYVE domain-con 55.7 6.7 0.00023 26.7 2.3 52 149-200 18-75 (82)
121 3c6w_A P28ING5, inhibitor of g 55.4 2 6.9E-05 27.7 -0.4 45 147-196 6-57 (59)
122 1wyh_A SLIM 2, skeletal muscle 54.6 7.5 0.00026 25.0 2.3 39 151-199 6-44 (72)
123 1x4k_A Skeletal muscle LIM-pro 52.9 7.6 0.00026 24.9 2.1 39 151-199 6-44 (72)
124 3shb_A E3 ubiquitin-protein li 52.8 2.1 7.3E-05 29.2 -0.7 44 152-196 28-76 (77)
125 1x4u_A Zinc finger, FYVE domai 52.3 7.2 0.00024 26.7 2.0 34 149-182 13-47 (84)
126 3i2d_A E3 SUMO-protein ligase 52.1 16 0.00054 32.3 4.6 46 151-198 250-298 (371)
127 3ql9_A Transcriptional regulat 51.5 13 0.00045 27.8 3.5 46 147-196 54-110 (129)
128 1wee_A PHD finger family prote 50.1 6.3 0.00022 26.1 1.4 49 148-197 14-66 (72)
129 4fo9_A E3 SUMO-protein ligase 50.1 18 0.00062 31.7 4.7 47 151-199 216-265 (360)
130 1wfk_A Zinc finger, FYVE domai 49.8 9.3 0.00032 26.5 2.3 34 149-182 8-42 (88)
131 1g47_A Pinch protein; LIM doma 49.5 7.6 0.00026 25.3 1.7 40 150-199 11-50 (77)
132 1vfy_A Phosphatidylinositol-3- 49.4 11 0.00036 25.1 2.4 32 151-182 12-44 (73)
133 2vnf_A ING 4, P29ING4, inhibit 49.3 2.7 9.2E-05 27.1 -0.6 45 147-196 7-58 (60)
134 1x63_A Skeletal muscle LIM-pro 49.0 11 0.00037 24.9 2.5 40 151-200 16-55 (82)
135 2ku3_A Bromodomain-containing 48.5 14 0.00049 24.5 3.0 50 147-196 13-65 (71)
136 2d8z_A Four and A half LIM dom 48.4 10 0.00034 24.2 2.2 35 152-198 7-41 (70)
137 1y02_A CARP2, FYVE-ring finger 48.4 1.7 5.6E-05 32.4 -2.0 47 149-196 18-65 (120)
138 1x62_A C-terminal LIM domain p 48.2 7.7 0.00026 25.6 1.6 37 150-198 15-51 (79)
139 2gmg_A Hypothetical protein PF 47.6 3.7 0.00013 29.9 -0.1 28 170-203 72-99 (105)
140 2co8_A NEDD9 interacting prote 47.3 7.9 0.00027 25.9 1.6 40 149-199 14-53 (82)
141 2dar_A PDZ and LIM domain prot 47.2 14 0.00049 24.9 3.0 38 150-199 25-62 (90)
142 1zbd_B Rabphilin-3A; G protein 47.0 8.6 0.00029 28.9 1.9 33 149-181 54-88 (134)
143 2cor_A Pinch protein; LIM doma 46.4 10 0.00035 25.1 2.0 38 150-199 15-52 (79)
144 1nyp_A Pinch protein; LIM doma 46.0 11 0.00036 23.9 2.0 38 151-200 6-43 (66)
145 1x61_A Thyroid receptor intera 45.2 13 0.00046 23.7 2.4 13 172-184 53-65 (72)
146 1dvp_A HRS, hepatocyte growth 44.6 9.6 0.00033 30.6 1.9 33 150-182 161-194 (220)
147 1x4l_A Skeletal muscle LIM-pro 44.3 13 0.00043 23.9 2.2 39 151-199 6-46 (72)
148 3ask_A E3 ubiquitin-protein li 43.9 4.6 0.00016 33.3 -0.1 44 152-196 176-224 (226)
149 2o35_A Hypothetical protein DU 43.8 9.3 0.00032 27.5 1.5 12 175-186 43-54 (105)
150 3fyb_A Protein of unknown func 43.7 9.4 0.00032 27.5 1.5 12 175-186 42-53 (104)
151 3f6q_B LIM and senescent cell 43.5 12 0.00041 23.7 2.0 41 150-200 11-51 (72)
152 1x64_A Alpha-actinin-2 associa 43.2 13 0.00043 25.2 2.1 39 150-200 25-63 (89)
153 3zyq_A Hepatocyte growth facto 43.0 11 0.00037 30.6 2.0 34 150-183 164-198 (226)
154 2ysm_A Myeloid/lymphoid or mix 41.7 4 0.00014 29.3 -0.7 45 152-197 56-104 (111)
155 2kwj_A Zinc finger protein DPF 40.2 1.5 5E-05 32.1 -3.4 49 151-199 59-110 (114)
156 1x68_A FHL5 protein; four-and- 39.8 16 0.00053 23.8 2.1 39 151-199 6-46 (76)
157 1wd2_A Ariadne-1 protein homol 39.3 2.6 8.9E-05 27.4 -1.9 37 151-187 7-48 (60)
158 1a7i_A QCRP2 (LIM1); LIM domai 39.2 9.1 0.00031 25.3 0.8 26 152-179 9-34 (81)
159 1wig_A KIAA1808 protein; LIM d 38.7 12 0.00041 24.4 1.4 25 152-179 7-31 (73)
160 2d8x_A Protein pinch; LIM doma 38.0 9.6 0.00033 24.4 0.8 36 152-199 7-42 (70)
161 3mpx_A FYVE, rhogef and PH dom 37.6 6.9 0.00024 34.2 0.0 50 149-198 374-430 (434)
162 2d8y_A Eplin protein; LIM doma 37.0 32 0.0011 23.1 3.4 26 152-179 17-42 (91)
163 2cur_A Skeletal muscle LIM-pro 35.9 11 0.00038 24.0 0.8 10 152-161 7-16 (69)
164 2l4z_A DNA endonuclease RBBP8, 35.0 16 0.00054 26.6 1.6 39 150-199 61-99 (123)
165 3o70_A PHD finger protein 13; 34.9 16 0.00055 24.0 1.5 46 149-196 18-66 (68)
166 1x6a_A LIMK-2, LIM domain kina 33.2 14 0.00048 24.3 1.0 36 152-199 17-52 (81)
167 3mjh_B Early endosome antigen 32.3 12 0.0004 21.6 0.4 14 150-163 5-18 (34)
168 2zet_C Melanophilin; complex, 32.1 24 0.00081 27.1 2.2 32 149-180 67-100 (153)
169 2cuq_A Four and A half LIM dom 32.1 19 0.00066 23.4 1.6 37 151-199 16-52 (80)
170 2l3k_A Rhombotin-2, linker, LI 31.6 13 0.00043 26.9 0.6 44 149-196 35-78 (123)
171 1v6g_A Actin binding LIM prote 31.4 16 0.00054 24.1 1.0 37 151-199 16-52 (81)
172 1zfo_A LAsp-1; LIM domain, zin 30.4 14 0.00047 20.4 0.5 28 151-180 4-31 (31)
173 3a1b_A DNA (cytosine-5)-methyl 30.0 40 0.0014 26.1 3.2 36 147-186 76-114 (159)
174 1m3v_A FLIN4, fusion of the LI 29.3 31 0.001 24.7 2.4 50 150-200 32-81 (122)
175 3kqi_A GRC5, PHD finger protei 29.3 41 0.0014 22.2 2.8 46 152-197 11-61 (75)
176 3o7a_A PHD finger protein 13 v 29.0 7.4 0.00025 24.1 -1.0 42 154-196 7-51 (52)
177 2ehe_A Four and A half LIM dom 28.9 22 0.00076 23.3 1.4 39 151-199 16-54 (82)
178 1x3h_A Leupaxin; paxillin fami 28.3 17 0.00059 23.7 0.8 37 151-199 16-52 (80)
179 2dlo_A Thyroid receptor-intera 27.1 19 0.00064 23.7 0.8 37 151-199 16-52 (81)
180 2egq_A FHL1 protein; LIM domai 27.1 29 0.00098 22.4 1.7 40 151-200 16-58 (77)
181 2cup_A Skeletal muscle LIM-pro 26.8 39 0.0013 22.9 2.5 47 149-200 32-78 (101)
182 2jne_A Hypothetical protein YF 26.7 3.3 0.00011 29.8 -3.3 40 151-199 33-72 (101)
183 2jm6_A NOXA; apoptosis, BCL-2, 25.9 14 0.00047 19.9 -0.1 11 6-16 4-14 (27)
184 3kv4_A PHD finger protein 8; e 24.6 14 0.00049 33.3 -0.3 48 151-198 5-57 (447)
185 2lq6_A Bromodomain-containing 24.4 31 0.0011 23.8 1.5 33 150-183 17-51 (87)
186 2iyb_E Testin, TESS, TES; LIM 24.2 34 0.0012 21.4 1.6 37 152-199 4-43 (65)
187 2xjy_A Rhombotin-2; oncoprotei 23.7 42 0.0014 23.9 2.2 9 190-198 96-104 (131)
188 1rut_X Flinc4, fusion protein 23.2 36 0.0012 26.3 1.9 37 152-198 71-107 (188)
189 1b8t_A Protein (CRP1); LIM dom 23.1 34 0.0012 26.4 1.8 41 151-196 143-183 (192)
190 2a20_A Regulating synaptic mem 22.4 44 0.0015 21.7 1.8 48 148-195 7-58 (62)
191 2xqn_T Testin, TESS; metal-bin 22.4 52 0.0018 23.3 2.5 47 149-200 29-75 (126)
192 2jmo_A Parkin; IBR, E3 ligase, 20.6 7.5 0.00026 26.4 -2.3 15 170-184 55-69 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=108.58 Aligned_cols=76 Identities=25% Similarity=0.577 Sum_probs=61.0
Q ss_pred hhhhchhhhccccceeecccCCCCcccccccccccccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCC
Q 028584 112 SVLMNINKSTVLHTQVFGSKKSGSKRFSWSKLSWKACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNC 191 (207)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~C 191 (207)
......+.+..||..++...... ..++..|+||++.|..++.++.++|+|.||..||..|+..+. +|
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~~~------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~C 80 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDHGA------------VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TC 80 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTCSS------------SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BC
T ss_pred CCCCCHHHHHhCCCeeecccccc------------cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cC
Confidence 44455666888888776654321 235678999999999888889999999999999999999877 99
Q ss_pred CCcccCccC
Q 028584 192 PCCRMQILD 200 (207)
Q Consensus 192 P~CR~~l~~ 200 (207)
|+||..+..
T Consensus 81 P~Cr~~~~~ 89 (91)
T 2l0b_A 81 PVCRCMFPP 89 (91)
T ss_dssp TTTCCBSSC
T ss_pred cCcCccCCC
Confidence 999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=104.05 Aligned_cols=52 Identities=40% Similarity=0.903 Sum_probs=47.2
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
++..|+||++.|..++.++.++|+|.||..||..|+..+. +||+||.++.+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCCC
Confidence 5678999999999888889999999999999999999887 999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=98.55 Aligned_cols=54 Identities=46% Similarity=0.966 Sum_probs=48.0
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPA 202 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~ 202 (207)
..+..|+||++.|..+..+..++|+|.||..||..|+..+. +||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccccc
Confidence 45678999999999888888899999999999999999887 9999999987543
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=96.40 Aligned_cols=56 Identities=39% Similarity=0.894 Sum_probs=48.6
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCCCC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPAA 203 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~~ 203 (207)
......|+||++.|..++.++.++|+|.||..||..|+..+. +||+||..|.....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCcCC
Confidence 345678999999998777888999999999999999999887 99999999875443
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=2.9e-14 Score=93.08 Aligned_cols=50 Identities=40% Similarity=1.054 Sum_probs=44.9
Q ss_pred ccccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
++..|+||++.|..++.+..++ |+|.||..||..|+..+. +||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEeE
Confidence 4567999999999887888888 999999999999998876 9999998874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=8.8e-14 Score=97.13 Aligned_cols=53 Identities=36% Similarity=1.019 Sum_probs=47.0
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.|..+..+..++|+|.||..||..|+.... +||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCc
Confidence 45678999999999887888899999999999999998876 999999988654
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=4.2e-13 Score=87.35 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=43.0
Q ss_pred ccccccccccccccC-CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVG-DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
++..|+||++.|.++ +.++.++|+|.||..||..|+.... +||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-CCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-cCCCCCCcCC
Confidence 456799999999653 3578889999999999999999886 9999998874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=6.5e-13 Score=99.10 Aligned_cols=54 Identities=30% Similarity=0.709 Sum_probs=41.7
Q ss_pred ccccccccccccccCC---------------eeEEcCCCCcccHHhHHHHHhc----CCCCCCCcccCccCCC
Q 028584 149 EQEECAICLERFKVGD---------------TLVHLPCAHRFHARCLLPWLAT----NAHNCPCCRMQILDPA 202 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~----~~~~CP~CR~~l~~~~ 202 (207)
.+..|+||++.|..+. .+..++|+|.||..||..|+.. ...+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3457999999996542 3447889999999999999953 1238999999886543
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=4.5e-13 Score=91.52 Aligned_cols=53 Identities=28% Similarity=0.655 Sum_probs=45.5
Q ss_pred cccccccccccccccC----CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVG----DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.++..|+||++.|.++ +.++.++|+|.||..||..|+.... +||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChh
Confidence 4567899999998763 4567889999999999999999887 999999988754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=90.36 Aligned_cols=52 Identities=29% Similarity=0.671 Sum_probs=44.2
Q ss_pred cccccccccccccccC----CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVG----DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ ..++.++|+|.||..||..|+.... .||+||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence 4567899999999753 3457889999999999999999876 99999998753
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.2e-13 Score=93.55 Aligned_cols=51 Identities=33% Similarity=0.752 Sum_probs=41.4
Q ss_pred cccccccccccccc-----------CCeeEEcC-CCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKV-----------GDTLVHLP-CAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
++..|+||++.|.. ++.++.++ |+|.||..||.+|+..+. +||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcch
Confidence 55669999988854 34455555 999999999999999887 99999998753
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=87.43 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=44.0
Q ss_pred ccccccccccccccC----CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVG----DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
++..|+||++.+.++ +.++.++|+|.||..|+..|+..+. .||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCcc
Confidence 346799999999753 3557889999999999999999876 999999988653
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=88.14 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=42.6
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.|.++ +.+ +|+|.||..||..|+.... .||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCcc
Confidence 4567899999999754 555 9999999999999998876 999999988654
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.27 E-value=2.2e-12 Score=96.24 Aligned_cols=50 Identities=30% Similarity=0.553 Sum_probs=42.5
Q ss_pred ccccccccccccccC---------------CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVG---------------DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~---------------~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
++..|+||++.|... ..++.++|+|.||..||..||..+. +||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence 567799999998754 1366789999999999999999877 9999999864
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=90.61 Aligned_cols=55 Identities=25% Similarity=0.613 Sum_probs=44.9
Q ss_pred cccccccccccccccccCCeeEEcCCC-----CcccHHhHHHHHhcCC-CCCCCcccCccCC
Q 028584 146 KACEQEECAICLERFKVGDTLVHLPCA-----HRFHARCLLPWLATNA-HNCPCCRMQILDP 201 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~~~ 201 (207)
...++..|.||+++|.+++.+ ++||. |.||..||.+|+..+. .+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 445677899999999866555 68996 9999999999999753 3899999988643
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=90.08 Aligned_cols=48 Identities=35% Similarity=0.613 Sum_probs=41.8
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.+...|+||++.+.++ +.++|+|.||..||..|+.... .||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGK-RCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCC-cCcCcCchhC
Confidence 3567899999999754 7789999999999999998876 9999999875
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.9e-12 Score=86.86 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=42.3
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc--CCCCCCCcccCccCC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT--NAHNCPCCRMQILDP 201 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~~CP~CR~~l~~~ 201 (207)
..+...|+||++.|.++ +.++|+|.||..||..|+.. ....||+||..+...
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34567899999999743 67799999999999999973 223899999988654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=3.2e-12 Score=86.74 Aligned_cols=49 Identities=35% Similarity=0.838 Sum_probs=42.1
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
....|+||++.+.+ .++.++|+|.||..|+..|+..+. +||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence 45679999999864 357889999999999999999886 99999988753
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=4.9e-12 Score=87.71 Aligned_cols=51 Identities=25% Similarity=0.671 Sum_probs=42.8
Q ss_pred cccccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcCC-CCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNA-HNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~~~ 201 (207)
.++..|+||++.|.++ +.++ |+|.||..||..|+.... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4567899999999865 7799 999999999999998652 3899999986543
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=85.81 Aligned_cols=51 Identities=22% Similarity=0.565 Sum_probs=42.2
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.+.++ +.++|+|.||..||..|+......||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4567899999999765 55899999999999999964434899999988654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=89.11 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=41.8
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.....|+||++.|.++ +.++|+|.||..||..|+.... .||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATP-RCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc
Confidence 3567899999999754 6789999999999999998876 9999999875
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7e-12 Score=88.89 Aligned_cols=54 Identities=31% Similarity=0.571 Sum_probs=44.5
Q ss_pred cccccccccccccccCCe-eEEcCCCCcccHHhHHHHHhcC--CCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDT-LVHLPCAHRFHARCLLPWLATN--AHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~--~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.|.+.+. ++.++|+|.||..||..|+... ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999986543 6888999999999999999976 23899999987543
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.22 E-value=2.7e-12 Score=99.37 Aligned_cols=48 Identities=38% Similarity=0.874 Sum_probs=41.8
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
++..|+||++.|.++ +.+||+|.||..||..|+.... .||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCC
Confidence 446799999999754 7789999999999999998877 99999998853
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-12 Score=87.70 Aligned_cols=49 Identities=39% Similarity=0.970 Sum_probs=42.4
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.+.+ +.++|+|.||..||..|+.... .||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCC
Confidence 356789999999874 7889999999999999998766 999999988754
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.19 E-value=1.1e-11 Score=86.42 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=42.4
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.++|+|.||..||..|+.....+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4567899999999754 6789999999999999998734499999998754
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.19 E-value=7.1e-12 Score=91.91 Aligned_cols=50 Identities=26% Similarity=0.630 Sum_probs=42.4
Q ss_pred cccccccccccccccCCeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +. ++|+|.||..||..|+......||+||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4667899999999743 56 89999999999999999873389999998753
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.4e-11 Score=81.29 Aligned_cols=45 Identities=31% Similarity=0.716 Sum_probs=37.6
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc--CCCCCCCc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT--NAHNCPCC 194 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~~CP~C 194 (207)
..++..|+||++.|.++ +.++|+|.||..||..|+.. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34667899999999865 77899999999999999984 22389998
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=2.3e-11 Score=85.24 Aligned_cols=51 Identities=35% Similarity=0.652 Sum_probs=42.6
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC-----CCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN-----AHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.|.++ +.++|+|.||..||..|+... ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3567899999999765 678999999999999999982 23899999988643
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=93.19 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=42.8
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.++|+|.||..||..|+......||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3567899999999754 7789999999999999998554589999998865
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=87.36 Aligned_cols=50 Identities=24% Similarity=0.625 Sum_probs=42.3
Q ss_pred ccccccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
..++..|+||++.|.++ +.++ |+|.||..||..|+.... ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34668899999999865 7889 999999999999997543 48999999874
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=2.1e-11 Score=82.18 Aligned_cols=53 Identities=21% Similarity=0.547 Sum_probs=42.3
Q ss_pred cccccccccc-ccccCCe-eEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLE-RFKVGDT-LVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle-~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
++..|+||++ .|.++.. .+.++|||.||..||..|+......||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3567999999 7876543 356799999999999999876544899999988643
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.15 E-value=4e-12 Score=96.51 Aligned_cols=54 Identities=30% Similarity=0.605 Sum_probs=2.7
Q ss_pred cccccccccccccccccccCC---------------eeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 144 SWKACEQEECAICLERFKVGD---------------TLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 144 ~~~~~~~~~C~ICle~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.|+. +++.|+||++.|.... .++.++|+|.||..||.+||..+. +||+||.++.
T Consensus 43 ~wd~-~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~ 111 (117)
T 4a0k_B 43 AWDI-VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 111 (117)
T ss_dssp EECC-CC----------------------------------------------------------------
T ss_pred eecC-CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeee
Confidence 3444 5578999999997521 233458999999999999999987 9999999864
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=84.97 Aligned_cols=50 Identities=32% Similarity=0.706 Sum_probs=42.2
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc------CCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT------NAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~~CP~CR~~l~~~ 201 (207)
.+...|+||++.|.++ +.++|+|.||..|+..|+.. .. .||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~-~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGES-SCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCC-CCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCC-cCCCCCCccCHH
Confidence 3567899999999765 66799999999999999987 44 999999988643
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=8.1e-12 Score=86.92 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=41.9
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC------CCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN------AHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~------~~~CP~CR~~l~~ 200 (207)
.++..|+||++.|.++ +.++|+|.||..||..|+... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567899999999765 668999999999999999862 2389999998864
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=88.36 Aligned_cols=49 Identities=24% Similarity=0.790 Sum_probs=41.5
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.+ +|+|.||..||..|+.... .||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCCh
Confidence 3567899999999753 555 8999999999999999776 99999998753
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=3.2e-11 Score=91.14 Aligned_cols=52 Identities=29% Similarity=0.667 Sum_probs=44.5
Q ss_pred ccccccccccccccC----CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVG----DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
++..|+||++.|.++ ..++.++|+|.||..||..|+.... +||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCccc
Confidence 557799999999754 4558889999999999999999887 999999988643
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.11 E-value=3.4e-11 Score=89.10 Aligned_cols=50 Identities=26% Similarity=0.651 Sum_probs=42.4
Q ss_pred ccccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..++..|+||++.|.++ +.+ +|+|.||..||..|+.... .||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCC-cCcCCCccccc
Confidence 34667899999999743 555 9999999999999999876 99999998864
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.08 E-value=6.3e-11 Score=93.24 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=43.0
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
+...|+||++.|.++ +.++|+|.||..||..|+......||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 557799999999754 67899999999999999997655899999998754
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=77.96 Aligned_cols=44 Identities=32% Similarity=0.863 Sum_probs=36.4
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc--CCCCCCCc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT--NAHNCPCC 194 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~~CP~C 194 (207)
.+...|+||++.+.++ +.++|+|.||..||..|+.. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999865 66899999999999999654 23489998
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.06 E-value=2.1e-11 Score=91.11 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=42.0
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.++..|+||++.|.++ +.++|+|.||..||..|+......||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3567899999999765 778999999999999999874458999999875
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=6.1e-11 Score=94.05 Aligned_cols=51 Identities=33% Similarity=0.800 Sum_probs=41.5
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.+ .+..++|+|.||..||..|+......||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 356789999999974 344459999999999999999744489999998853
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=80.61 Aligned_cols=51 Identities=25% Similarity=0.542 Sum_probs=41.2
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
......|+||.+.|..++ .-..|+|.||..||.+||+... .+||+|+.++.
T Consensus 12 ~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345678999999998653 2227999999999999998762 39999999875
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=1.5e-10 Score=86.58 Aligned_cols=50 Identities=28% Similarity=0.603 Sum_probs=42.3
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.++|+|.||..||..|+......||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4567899999999754 6689999999999999999743499999998764
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.02 E-value=1.1e-10 Score=87.77 Aligned_cols=50 Identities=32% Similarity=0.761 Sum_probs=42.6
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.++|+|.||..||..|+......||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4567899999999754 7789999999999999998764489999998754
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.2e-10 Score=86.06 Aligned_cols=50 Identities=36% Similarity=0.707 Sum_probs=41.5
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC--CCCCCcccCccCC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA--HNCPCCRMQILDP 201 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~~CP~CR~~l~~~ 201 (207)
+...|+||++.|.++ +.++|+|.||..||..|+.... ..||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 456799999999765 5689999999999999998642 3899999988643
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.97 E-value=1.4e-10 Score=90.38 Aligned_cols=50 Identities=22% Similarity=0.553 Sum_probs=42.5
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..+...|+||++.|.++ +.++|+|.||..||..|+......||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34667899999999765 678999999999999999866558999999764
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=4.1e-10 Score=80.38 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=42.6
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.+...|+||++.|.++ +.++|||.|+..||..|+.... +||+|+.++.
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCC
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCC-CCCCCcCCCC
Confidence 3567899999999866 8899999999999999999765 9999998875
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.95 E-value=2.7e-10 Score=80.31 Aligned_cols=53 Identities=21% Similarity=0.552 Sum_probs=40.7
Q ss_pred cccccccccccccccCCeeEEc--CCCCcccHHhHHHHHhcCCCCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHL--PCAHRFHARCLLPWLATNAHNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~ 201 (207)
.++..|+||++.+...+ +..+ +|||.||..|+..++......||.||..+...
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 46678999999886432 2334 49999999999999865445899999988643
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=3.2e-10 Score=85.59 Aligned_cols=52 Identities=29% Similarity=0.671 Sum_probs=44.0
Q ss_pred cccccccccccccccC----CeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVG----DTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|..+ ..++.++|+|.||..||.+|+.... +||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCCh
Confidence 4567799999998753 3457889999999999999999887 99999998864
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.93 E-value=9.6e-10 Score=80.61 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=43.1
Q ss_pred cccccccccccccccCCeeEEcCCC-CcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCA-HRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.++..|+||++.|.++ +.++|+ |.|+..||..|+.... +||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCCh
Confidence 4567899999999866 889999 9999999999998765 99999998764
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.92 E-value=5.1e-10 Score=82.39 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=43.2
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.++|||.|+..||..|+.... +||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCS-BCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCC-CCCCCCCCCCh
Confidence 4678899999999866 8889999999999999998765 99999998764
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=7.8e-10 Score=74.78 Aligned_cols=47 Identities=32% Similarity=0.528 Sum_probs=39.2
Q ss_pred ccccccccccccccCCeeEEc--CCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHL--PCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
++..|.||++.+.+. +.+ ||+|. ||..|+..|+..+. .||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchh
Confidence 556799999987643 444 99999 89999999998776 9999999874
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=4.8e-10 Score=73.69 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=39.5
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccCCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILDPA 202 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~ 202 (207)
.+...|+||++.|.++ +.++|+|.||..|+..| .. .||+||..+..+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~-~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GM-QCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SS-SCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CC-CCCcCCcEeecCC
Confidence 3567799999999865 77899999999999774 33 8999999887543
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=1.4e-09 Score=91.56 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=43.3
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
......|+||++.|.++ ++++|||+||..||..|+..+..+||+|+.++.
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34677899999999866 889999999999999999976536999999875
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=5e-10 Score=84.06 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=40.3
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
.+...|+||++.|.++ +.+ +|+|.||..||..|+. . .||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~-~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--T-GCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--T-BCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--C-CCcCCCCcCcc
Confidence 4567899999999765 667 8999999999999987 4 89999998853
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.81 E-value=1.7e-09 Score=72.93 Aligned_cols=49 Identities=24% Similarity=0.530 Sum_probs=39.5
Q ss_pred ccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|.||++.+.+. .++.+||+|. ||..|+..|...+. .||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGA-SCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTC-BCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCC-cCCCcCchhh
Confidence 456799999987643 2334599998 99999999988775 9999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=1.1e-09 Score=76.04 Aligned_cols=43 Identities=33% Similarity=0.763 Sum_probs=37.1
Q ss_pred ccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
++..|+||++.+.+ ++.+||+|. ||..|+..| . .||+||..+.
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----D-KCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----S-BCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----c-cCCCcCcCcc
Confidence 55679999999864 478899999 999999998 3 8999999875
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78 E-value=2.5e-09 Score=85.00 Aligned_cols=51 Identities=31% Similarity=0.738 Sum_probs=43.0
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..+...|+||++.|.++ +.++|+|.||..||..|+......||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34667899999999755 6789999999999999998654489999988754
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.78 E-value=3.1e-09 Score=95.31 Aligned_cols=48 Identities=33% Similarity=0.761 Sum_probs=40.3
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
...|+||++.+.+ ++.+||+|.||..|+..|+......||+||.++..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3679999999864 48899999999999999998433399999998764
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.1e-09 Score=75.46 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=38.6
Q ss_pred ccccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcC-----CCCCCC--cccC
Q 028584 149 EQEECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATN-----AHNCPC--CRMQ 197 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~-----~~~CP~--CR~~ 197 (207)
+...|+||++.|.++ +.++ |||.|+..||..|+..+ ..+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 557799999999865 7785 99999999999999864 238999 9855
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.68 E-value=1.1e-08 Score=82.80 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=42.9
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..+...|+||++.|.++ +.++|||.|+..||..|+..+..+||+|+.++.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34678899999999865 888999999999999999875437999998875
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=4.2e-09 Score=73.02 Aligned_cols=44 Identities=32% Similarity=0.657 Sum_probs=36.3
Q ss_pred ccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
++..|+||++.+.+. +.+||+|. ||..|+..+ . .||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----D-KCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHHC----S-BCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhCC----C-CCccCCceecC
Confidence 456799999998654 77899999 999999642 3 89999998864
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.7e-08 Score=68.04 Aligned_cols=46 Identities=26% Similarity=0.648 Sum_probs=37.4
Q ss_pred ccccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..+...|.||++.+.+ ++.+||+|. ||..|+.. .. .||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~-~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQ-QCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CS-SCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CC-CCCCCCcchhc
Confidence 3456789999998764 588999999 99999984 23 89999998854
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.56 E-value=1.1e-08 Score=90.40 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=39.9
Q ss_pred cccccccccccccccCCeeE-----EcCCCCcccHHhHHHHHhcCC----------CCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLV-----HLPCAHRFHARCLLPWLATNA----------HNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~-----~lpC~H~Fh~~Ci~~wl~~~~----------~~CP~CR~~l~ 199 (207)
....+|+||+..+.++..+. ..+|+|.||..||.+||.... ..||+||.+|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999988732221 246999999999999998531 16999999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=4.3e-08 Score=70.59 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=38.7
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcC-------CCCCCC--cccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATN-------AHNCPC--CRMQ 197 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-------~~~CP~--CR~~ 197 (207)
+..+|+||++++..++.+...+|+|.||..||..++... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 346799999999876544445799999999999998742 127999 9987
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.50 E-value=7.6e-08 Score=64.36 Aligned_cols=50 Identities=24% Similarity=0.559 Sum_probs=37.8
Q ss_pred ccccccccccccccccCCeeEEcCCC--C---cccHHhHHHHHhcC-CCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCA--H---RFHARCLLPWLATN-AHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~~~-~~~CP~CR~~l~ 199 (207)
..+...|.||++... +.+ .+||. + .||..||.+|+... +.+||+|+.++.
T Consensus 3 ~~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345678999999743 233 58864 4 89999999999852 348999998875
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=2.8e-08 Score=69.83 Aligned_cols=43 Identities=28% Similarity=0.638 Sum_probs=36.0
Q ss_pred ccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
++..|.||++.+.+ ++.+||+|. ||..|+..| . .||+||..+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----Q-SCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----S-BCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----C-cCCCCCchhh
Confidence 45679999998764 488999999 999999876 2 8999998774
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.33 E-value=9.3e-08 Score=84.63 Aligned_cols=44 Identities=30% Similarity=0.753 Sum_probs=38.0
Q ss_pred cccccccccccccccCCeeEEcCCCCc-ccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHR-FHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.++..|+||++.+.+ ++.+||+|. ||..|+..| . .||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----R-KCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----S-BCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----C-cCCCCCCCcc
Confidence 466789999999864 478899999 999999988 3 8999999875
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.9e-07 Score=78.48 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=40.4
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC-CCCCC--cccCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA-HNCPC--CRMQIL 199 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~~CP~--CR~~l~ 199 (207)
.....|+||++.|.++ ++.+.|||.||..||..|+..+. ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4667899999999754 44458999999999999998643 37999 998664
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.21 E-value=4.7e-07 Score=60.61 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=39.3
Q ss_pred ccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|+||++.+.++ +.+ +|||+|...||.+|+..+. +||+.+.++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCC
Confidence 4699999999854 666 8999999999999999876 8999998774
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.18 E-value=1.3e-06 Score=63.86 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=38.3
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.|.+|--.|. ...+.+||.|+||.+|+..|.+.....||.|+.+|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4888887775 356788999999999999998765559999998875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.50 E-value=0.0001 Score=61.81 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=39.7
Q ss_pred ccccccccccccccCCeeEEcC-CCCcccHHhHHHHHhcCC-CCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLP-CAHRFHARCLLPWLATNA-HNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~-~~CP~CR~~l~~ 200 (207)
....|.||.+.+..+ ..-+ |+|.||..|+..|++... ..||.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467899999998866 3333 999999999999998643 489999998864
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.92 E-value=0.0046 Score=44.58 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=36.5
Q ss_pred ccccccccccccccCCeeEEcCC-CCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPC-AHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC-~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
....|-.|+.... ..+.| .|.+|..|+...|.... .||+|..++..
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSS-EETTTTEECCC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhcc-CCcccCCcCCc
Confidence 3456999997764 24455 69999999999988887 99999987753
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.43 E-value=0.025 Score=40.31 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=25.6
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHH
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPW 183 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~w 183 (207)
++..|.||.+.+..+....-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45679999986433223333899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.20 E-value=0.061 Score=36.07 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=33.6
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcccCccC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCRMQILD 200 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l~~ 200 (207)
.....|.||.+. ++.+.=-.|...||..|+.+.+.... -.||.|.....+
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 345679999753 33222224899999999988776543 279999865543
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.27 E-value=0.081 Score=37.31 Aligned_cols=33 Identities=27% Similarity=0.636 Sum_probs=23.9
Q ss_pred ccccccccccccccccCCeeEEcC---CCCcccHHhHHHH
Q 028584 147 ACEQEECAICLERFKVGDTLVHLP---CAHRFHARCLLPW 183 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lp---C~H~Fh~~Ci~~w 183 (207)
...+..|.||-.. ..+ ..+| |+-+||..|+.+.
T Consensus 12 ~~~D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-ccc---ceeccccccccccHhhcccc
Confidence 3467889999633 333 3455 7899999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.37 E-value=0.35 Score=31.55 Aligned_cols=48 Identities=25% Similarity=0.701 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCRMQ 197 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~ 197 (207)
...+..|.||... ++.+.--.|...||..|+.+-+.... -.||.|...
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4466779999873 32222224889999999987443221 279999653
No 78
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.01 E-value=0.93 Score=28.44 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=28.2
Q ss_pred cccccccccccCCeeEEc--CCCCcccHHhHHHH---HhcCCCCCCCcc
Q 028584 152 ECAICLERFKVGDTLVHL--PCAHRFHARCLLPW---LATNAHNCPCCR 195 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci~~w---l~~~~~~CP~CR 195 (207)
.|.||...+..+...+.- .|...||..|+.-- .......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 377888887544444443 38889999998422 112334899985
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.29 E-value=0.22 Score=33.65 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=32.8
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcC---CCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATN---AHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~---~~~CP~CR~~l~ 199 (207)
+...|.||..... ++.++.- .|...||..|+..-.... ...||.|...+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4556999987653 3334433 389999999996543321 237999976553
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.50 E-value=0.6 Score=30.43 Aligned_cols=49 Identities=22% Similarity=0.549 Sum_probs=33.1
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHh----cCCCCCCCccc
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLA----TNAHNCPCCRM 196 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~----~~~~~CP~CR~ 196 (207)
.+...|+||...+.++..++.- .|...||..|+.--.. .....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3556799999887544444443 4999999999854322 12248999965
No 81
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.37 E-value=0.97 Score=30.81 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=30.9
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHHHHh----cCCCCCCCcccCc
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLA----TNAHNCPCCRMQI 198 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~----~~~~~CP~CR~~l 198 (207)
+...| ||...+.....++.- .|..+||..|+.--.. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 33446 998877433344443 4999999999943211 1224899998654
No 82
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.35 E-value=0.42 Score=32.39 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=29.9
Q ss_pred cccccccccccccCCeeEEc-CCCCcccHHhHHHHH--------hcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWL--------ATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl--------~~~~~~CP~CR~~l~ 199 (207)
...| ||....... .++.- .|..+||..|+.--. ......||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456 898876532 33333 499999999993211 112348999976443
No 83
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.64 E-value=0.47 Score=33.94 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=29.3
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcC--CCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATN--AHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~--~~~CP~CR~ 196 (207)
+...| ||......+ .++.- .|...||..|+..-+... ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44567 887765544 33333 499999999996532221 138999974
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.54 E-value=0.74 Score=28.57 Aligned_cols=44 Identities=30% Similarity=0.692 Sum_probs=27.3
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC---CCCCCccc
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA---HNCPCCRM 196 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~---~~CP~CR~ 196 (207)
.|.||...-..+ .++.- .|...||..|+.+=+.... -.||.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488887653222 23332 4899999999975333221 26999964
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=79.24 E-value=0.3 Score=32.38 Aligned_cols=51 Identities=27% Similarity=0.647 Sum_probs=32.2
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcccCccCC
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCRMQILDP 201 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l~~~ 201 (207)
.++..|.||... ++.+.--.|...||..|+.+-+.... -.||.|...-...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 59 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccccc
Confidence 356779999864 32222224889999999985433221 2699997654433
No 86
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=78.53 E-value=1.6 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=24.0
Q ss_pred cccccccccccccccCCeeEEc--CCCCcccHHhH
Q 028584 148 CEQEECAICLERFKVGDTLVHL--PCAHRFHARCL 180 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci 180 (207)
.....|.+|...+...+..+.- .|...||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3556799999988765555544 59999999998
No 87
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.21 E-value=1.8 Score=42.76 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=41.8
Q ss_pred ccccccccccccccccCCeeEEcCCC-CcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCA-HRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..+...|+|-++.+.++ +.+|.| +.|-..+|..|+..+. +||+=|.++.
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCC
Confidence 34667899999999866 889987 6899999999999876 9999887775
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.02 E-value=1 Score=31.83 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=31.4
Q ss_pred ccccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC---CCCCCcccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA---HNCPCCRMQ 197 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~ 197 (207)
..++..|.||... ++ ++.- .|.-.||..|+.+=+.... -.||.|...
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456779999864 32 2332 4888999999977554322 179999754
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=75.99 E-value=0.56 Score=37.79 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=31.2
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC---CCCCCcccCc
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA---HNCPCCRMQI 198 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l 198 (207)
..+..|.+|... + .++.- .|...||..|+.+-+.... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 455679999854 2 22222 3889999999977554322 2799998643
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.04 E-value=0.43 Score=31.12 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=30.0
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCRMQ 197 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~ 197 (207)
+.++..|.||... ++.+.--.|...||..|+.+-+.... -.||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456779999863 22111123888999999986433221 269999754
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.66 E-value=0.3 Score=34.67 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=32.5
Q ss_pred cccccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC---CCCCCcccC
Q 028584 146 KACEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA---HNCPCCRMQ 197 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~ 197 (207)
...++..|.||...-..+ .++.- .|...||..|+.+=+.... -.||.|...
T Consensus 12 ~~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445667799998764322 33333 4999999999975333221 169999653
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=73.56 E-value=0.88 Score=35.39 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=30.3
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHh----cCCCCCCCccc
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLA----TNAHNCPCCRM 196 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~----~~~~~CP~CR~ 196 (207)
.+...| ||......+..++.- .|..+||..|+.--.. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 355678 998876433334443 4899999999943211 12238999975
No 93
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.54 E-value=0.89 Score=31.01 Aligned_cols=49 Identities=16% Similarity=0.463 Sum_probs=30.3
Q ss_pred cccccccccccccccCCeeEEc---CCCCcccHHhHHHHHhc--------CCCCCCCcccCc
Q 028584 148 CEQEECAICLERFKVGDTLVHL---PCAHRFHARCLLPWLAT--------NAHNCPCCRMQI 198 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~--------~~~~CP~CR~~l 198 (207)
.+...| ||......+ .++.- .|..+||..|+.---.. ....||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345567 898874433 33332 49999999998432111 124899997644
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.66 E-value=0.25 Score=32.02 Aligned_cols=48 Identities=33% Similarity=0.726 Sum_probs=30.5
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l~ 199 (207)
++..|.||... ++.+.--.|...||..|+.+-+.... -.||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999874 32222224899999999985433221 26999865443
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.88 E-value=2.2 Score=30.23 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=27.9
Q ss_pred ccccccccccccccccCCeeEEc-C--CC-CcccHHhHHHHHhcC---CCCCCCcccCc
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-P--CA-HRFHARCLLPWLATN---AHNCPCCRMQI 198 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~---~~~CP~CR~~l 198 (207)
..+...| ||..... ++ ++.- . |. .+||..|+. |... ...||.|+...
T Consensus 33 ~~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3455667 9988643 32 2211 2 54 689999996 2221 13899997643
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.81 E-value=0.36 Score=30.87 Aligned_cols=45 Identities=31% Similarity=0.713 Sum_probs=28.7
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCR 195 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR 195 (207)
.++..|.||... ++.+.--.|...||..|+.+-+.... -.||.|.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 356779999874 32222224899999999986443221 1688875
No 97
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=68.08 E-value=0.48 Score=31.53 Aligned_cols=46 Identities=22% Similarity=0.529 Sum_probs=27.2
Q ss_pred ccccccccccccccCCeeEEcC---CCCcccHHhHHHHH---hc----CCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHLP---CAHRFHARCLLPWL---AT----NAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lp---C~H~Fh~~Ci~~wl---~~----~~~~CP~CR~ 196 (207)
+...| ||......+ .++.-. |..+||..|+.--- .. ....||.||.
T Consensus 9 ~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34556 897655444 344443 88899999983210 00 0137999974
No 98
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=67.77 E-value=2 Score=28.08 Aligned_cols=42 Identities=24% Similarity=0.516 Sum_probs=27.5
Q ss_pred ccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCCCCCCCc
Q 028584 151 EECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNAHNCPCC 194 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~~CP~C 194 (207)
..|-.|+..|... ....- .|++.||.+|=.- +...-..||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 3599999998643 22223 3999999999533 22222389988
No 99
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.48 E-value=3.2 Score=28.92 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=28.9
Q ss_pred ccccccccccccccCCeeEEcC--CCCcccHHhHHHHHhcC
Q 028584 149 EQEECAICLERFKVGDTLVHLP--CAHRFHARCLLPWLATN 187 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~ 187 (207)
....|.+|.+.+++. ..+.-| =.|.||.-|-...++..
T Consensus 14 a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhc
Confidence 456799999999865 344444 37999999999888753
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.06 E-value=5.2 Score=30.59 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCeeEEcCCCCcccHHhHHHHHh----------cCCCCCCCccc
Q 028584 147 ACEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLA----------TNAHNCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~----------~~~~~CP~CR~ 196 (207)
...+..|.||.+- ++-+---.|...||..||.+-+. ...-.||.|..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999875 32222225999999999997652 11127999974
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.57 E-value=3.2 Score=27.81 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=28.5
Q ss_pred cccccccccccccccccCCeeEEc-C--CC-CcccHHhHHHHHhcC---CCCCCCcccCc
Q 028584 146 KACEQEECAICLERFKVGDTLVHL-P--CA-HRFHARCLLPWLATN---AHNCPCCRMQI 198 (207)
Q Consensus 146 ~~~~~~~C~ICle~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~---~~~CP~CR~~l 198 (207)
+..+...| ||..... + .++.- . |. ..||..|+. |... ...||.|+...
T Consensus 12 d~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 33455667 8987542 3 22222 2 55 699999996 2221 13799997543
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=66.38 E-value=2.4 Score=27.59 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=31.9
Q ss_pred cccccccccccccccC-CeeEEc-CCCCcccHHhHHHHHh------cCCCCCCCcccC
Q 028584 148 CEQEECAICLERFKVG-DTLVHL-PCAHRFHARCLLPWLA------TNAHNCPCCRMQ 197 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~-~~~~~l-pC~H~Fh~~Ci~~wl~------~~~~~CP~CR~~ 197 (207)
.++..|.||....... ..++.- .|...||..|+.+-+. ...-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3567799999764332 233333 4899999999976332 122279998654
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.05 E-value=5.1 Score=28.94 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=27.8
Q ss_pred ccccccccccccc-----cCCeeEE-cCCCCcccHHhHHH------HHhcCCCCCCCcc
Q 028584 149 EQEECAICLERFK-----VGDTLVH-LPCAHRFHARCLLP------WLATNAHNCPCCR 195 (207)
Q Consensus 149 ~~~~C~ICle~~~-----~~~~~~~-lpC~H~Fh~~Ci~~------wl~~~~~~CP~CR 195 (207)
....|.+|+..-. .++.++. ..|+..||..|+.. .+....-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3456999987521 1223333 35999999999952 2223333577664
No 104
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.64 E-value=8 Score=27.34 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=36.2
Q ss_pred ccccccccccccccC---CeeEE-cCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVG---DTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~---~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|.||-+++-.. +..+. ..|+--.|..|++--.+..+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 446799999986432 21111 2377789999998777766669999998774
No 105
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=65.64 E-value=4.3 Score=29.49 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=30.4
Q ss_pred ccccccccccccccccCCeeEEcC---CCCcccHHhHHHHHhcCC---CCCCCcccCccC
Q 028584 147 ACEQEECAICLERFKVGDTLVHLP---CAHRFHARCLLPWLATNA---HNCPCCRMQILD 200 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l~~ 200 (207)
..++..|.+|.+. + .++.-. |...||..|+. |.... -.||.|...+..
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 3466779999842 3 344433 88899999997 33221 168877655443
No 106
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=65.33 E-value=2.9 Score=30.12 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=32.6
Q ss_pred ccccccccccccCCeeEEc--CCCCcccHHhHHHH---Hhc------CCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHL--PCAHRFHARCLLPW---LAT------NAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci~~w---l~~------~~~~CP~CR~~l~ 199 (207)
..|.||...+......+.- .|..+||..|+.-- ++. ....||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4599999988654445554 48999999998321 110 1238999976543
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.26 E-value=1.5 Score=31.69 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=29.7
Q ss_pred cccccccccccccccCCeeEEcCCCCcccHHhHHHHHhc---CCCCCCCcc
Q 028584 148 CEQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLAT---NAHNCPCCR 195 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~~CP~CR 195 (207)
.++..|.||.+.-...+.+.=-.|...||..|+...+.. ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 356779999876322222333459999999999876542 112566553
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.07 E-value=1.7 Score=31.56 Aligned_cols=46 Identities=28% Similarity=0.618 Sum_probs=28.6
Q ss_pred ccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC---CCCCCccc
Q 028584 151 EECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA---HNCPCCRM 196 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~---~~CP~CR~ 196 (207)
..|.||...-.+++.++.- .|...||..|+.+-+.... -.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3578887642222233333 4999999999976444322 17999974
No 109
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.64 E-value=2.9 Score=27.50 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=24.7
Q ss_pred ccccccccccccccCCeeEEcCCCCcccH-HhHHHHHhcCCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHA-RCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~-~Ci~~wl~~~~~~CP~CR~ 196 (207)
+-..|..|...|.... ....=+..||. .|..+.+ .. .|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~f--~~-~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAMF--GP-KGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHHS--SC-CCSSCCC
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHHh--Cc-cCCCcCC
Confidence 4456778877776542 22234566777 5775532 22 6777753
No 110
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=63.13 E-value=6.6 Score=27.30 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=31.9
Q ss_pred ccccccccccccccc-cCCeeEEc-CCCCcccHHhHHHHHh-cCCCCCCCcccCc
Q 028584 147 ACEQEECAICLERFK-VGDTLVHL-PCAHRFHARCLLPWLA-TNAHNCPCCRMQI 198 (207)
Q Consensus 147 ~~~~~~C~ICle~~~-~~~~~~~l-pC~H~Fh~~Ci~~wl~-~~~~~CP~CR~~l 198 (207)
..++..|.||...-. +++.++.- .|.-.||..|+..-+. ...-.||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 346678999987532 22233333 3888999999975321 1112799996543
No 111
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.78 E-value=4 Score=26.78 Aligned_cols=39 Identities=18% Similarity=0.542 Sum_probs=26.8
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..|..|-+.+...+.+. .-+..||..|+ .|..|..+|..
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 55888888887555443 24677888774 78888777653
No 112
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=60.95 E-value=2 Score=28.69 Aligned_cols=44 Identities=32% Similarity=0.635 Sum_probs=26.4
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcC----CCCCCCccc
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATN----AHNCPCCRM 196 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~----~~~CP~CR~ 196 (207)
.|.||...-..+ .++.- .|...||..|+.+=+... .-.||.|..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777532222 33333 489999999998543321 127999864
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.42 E-value=1.8 Score=29.53 Aligned_cols=44 Identities=25% Similarity=0.612 Sum_probs=27.4
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcC----CCCCCCccc
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATN----AHNCPCCRM 196 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~----~~~CP~CR~ 196 (207)
.|.||...-..+ .++.- .|...||..|+.+=+... .-.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688888643222 33332 489999999998533321 126998864
No 114
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.54 E-value=0.77 Score=32.16 Aligned_cols=51 Identities=22% Similarity=0.492 Sum_probs=32.7
Q ss_pred ccccccccccccccC-CeeEEc-CCCCcccHHhHHHHHhc-------CCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVG-DTLVHL-PCAHRFHARCLLPWLAT-------NAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~-~~~~~l-pC~H~Fh~~Ci~~wl~~-------~~~~CP~CR~~l~ 199 (207)
.+..|.||...-..+ +.++.- .|...||..|+.+-+.. ..-.|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 456799999763321 233333 38999999999865431 1127999976443
No 115
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.51 E-value=6.2 Score=29.25 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=23.8
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHH
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLP 182 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~ 182 (207)
+...|.+|...|..-..--+- .||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 456799999998643221222 4999999999754
No 116
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.12 E-value=5 Score=26.78 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.1
Q ss_pred cccccccccccccccCCeeEEcCC-CCcccHHhHHHH
Q 028584 148 CEQEECAICLERFKVGDTLVHLPC-AHRFHARCLLPW 183 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~lpC-~H~Fh~~Ci~~w 183 (207)
.+..-|.||.++ ..+.-+.| +..||..|+.+.
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 344569999998 35677789 789999999775
No 117
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.17 E-value=7.5 Score=27.01 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=24.4
Q ss_pred ccccccccccccccCCeeEE-cCCCCcccHHhHHHH
Q 028584 149 EQEECAICLERFKVGDTLVH-LPCAHRFHARCLLPW 183 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~w 183 (207)
+...|.+|...|..-..--+ -.||.+||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45679999998864322222 249999999998654
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=56.17 E-value=6.9 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.0
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHH
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPW 183 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~w 183 (207)
.+...|.+|...|..-..--+- .||.+||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3556799999998753221222 49999999997553
No 119
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.84 E-value=5.9 Score=26.54 Aligned_cols=40 Identities=28% Similarity=0.717 Sum_probs=27.3
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|..|-+.+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC---------CcCcCCCCcC
Confidence 34569999888875544433 3667888874 7888877664
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.65 E-value=6.7 Score=26.74 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=31.6
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhcC-----CCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATN-----AHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~-----~~~CP~CR~~l~~ 200 (207)
+...|.+|...|..-..--+- .||.+||..|....+... ..+|-.|-..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 456799999998743211222 499999999975432111 0157777555543
No 121
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=55.43 E-value=2 Score=27.71 Aligned_cols=45 Identities=29% Similarity=0.639 Sum_probs=26.2
Q ss_pred ccccccccccccccccCCeeEEc-C--CC-CcccHHhHHHHHhcC---CCCCCCccc
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-P--CA-HRFHARCLLPWLATN---AHNCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~---~~~CP~CR~ 196 (207)
..+...| ||..... + .++.- . |. ..||..|+. +... ...||.|+.
T Consensus 6 ~~e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3455567 9988642 3 33332 3 55 699999996 2221 127998864
No 122
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.56 E-value=7.5 Score=24.96 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=21.7
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+...+.+ +..-+..||..|+ +|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF---------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC---------BCTTTCCBTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC---------eECCCCCcCC
Confidence 4477777766543222 2224566776663 5666666554
No 123
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.92 E-value=7.6 Score=24.94 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=22.3
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+...+.++.. -+..||..|+ .|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY-KGSSWHETCF---------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE-TTEEEETTTT---------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE-CcCeecccCC---------cccccCCccC
Confidence 3477777776643322222 3556777663 6666766554
No 124
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=52.79 E-value=2.1 Score=29.24 Aligned_cols=44 Identities=32% Similarity=0.637 Sum_probs=26.1
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC----CCCCCccc
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA----HNCPCCRM 196 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~~CP~CR~ 196 (207)
.|.||...-..+ .++.- .|...||..|+.+-|.... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543222 23322 4899999999986444221 16998874
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.31 E-value=7.2 Score=26.67 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=23.3
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHH
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLP 182 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~ 182 (207)
+...|.+|...|..-..--+- .||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 456799999998643211122 3999999999754
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.14 E-value=16 Score=32.26 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=28.7
Q ss_pred ccccccccccccCCeeEEcCCCCcccHH--hHHHHHhcCC-CCCCCcccCc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHAR--CLLPWLATNA-HNCPCCRMQI 198 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~--Ci~~wl~~~~-~~CP~CR~~l 198 (207)
..|+|=...|.. .++...|.|.-|.+ -+........ -.||+|...+
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 468888777763 45667799984433 3333322222 2799998765
No 127
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=51.45 E-value=13 Score=27.81 Aligned_cols=46 Identities=30% Similarity=0.631 Sum_probs=29.8
Q ss_pred ccccccccccccccccCCeeEEc-CCCCcccHHhHHHH-----H-hc----CCCCCCCccc
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPW-----L-AT----NAHNCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~w-----l-~~----~~~~CP~CR~ 196 (207)
+..+..|.||-+- + .++-- .|...||..||.+- + .. ..-.|+.|..
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456679999864 2 22222 48899999999975 2 11 1127999964
No 128
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.12 E-value=6.3 Score=26.10 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=30.9
Q ss_pred cccccccccccccccCCeeEEc-CCCCcccHHhHHHHHh---cCCCCCCCcccC
Q 028584 148 CEQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLA---TNAHNCPCCRMQ 197 (207)
Q Consensus 148 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~---~~~~~CP~CR~~ 197 (207)
.+...| ||......++.++.- .|...||..|+.--.. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 345568 798875444334443 4999999999854321 112389999754
No 129
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=50.06 E-value=18 Score=31.71 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=30.4
Q ss_pred ccccccccccccCCeeEEcCCCCc--ccHHhHHHHHhcCC-CCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHR--FHARCLLPWLATNA-HNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~--Fh~~Ci~~wl~~~~-~~CP~CR~~l~ 199 (207)
..|+|=...|.. ..+...|.|. |-..-+-.+..... -.||+|...+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 469988888864 4566779998 44433333333332 27999987663
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.82 E-value=9.3 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=22.7
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHH
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLP 182 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~ 182 (207)
+...|.+|...|..-..--+- .||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 445799999988643211222 3899999998754
No 131
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.52 E-value=7.6 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=24.7
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|..|.+.+...+.++.. -+..||..|. .|-.|..+|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS-NGELYHEQCF---------VCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE-TTEEECTTTC---------CCTTTCCCCG
T ss_pred CCCchhcCCccCCCceEEEe-CccEeccccC---------eECCCCCCCC
Confidence 45688888877643333222 3567777773 6777776664
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.36 E-value=11 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=22.1
Q ss_pred ccccccccccccCCeeEEc-CCCCcccHHhHHH
Q 028584 151 EECAICLERFKVGDTLVHL-PCAHRFHARCLLP 182 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~ 182 (207)
..|.+|...|..-..--+- .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999998643211222 3999999999743
No 133
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.27 E-value=2.7 Score=27.13 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=25.7
Q ss_pred ccccccccccccccccCCeeEEc-C--CC-CcccHHhHHHHHhcC---CCCCCCccc
Q 028584 147 ACEQEECAICLERFKVGDTLVHL-P--CA-HRFHARCLLPWLATN---AHNCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~---~~~CP~CR~ 196 (207)
..+...| ||..... + .++.- . |. ..||..|+. +... ...||.|+.
T Consensus 7 ~~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3445556 9987632 3 33332 2 54 689999996 3322 127998854
No 134
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.96 E-value=11 Score=24.87 Aligned_cols=40 Identities=25% Similarity=0.553 Sum_probs=26.8
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..|..|-+.+...+.++ ..-+..||..|+ +|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC---------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceEE-EECccccccccC---------chhhCCCccCC
Confidence 46888888877544332 234678888874 78888776653
No 135
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.50 E-value=14 Score=24.51 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=31.1
Q ss_pred cccccccccccccc-ccCCeeEEc-CCCCcccHHhHHHHHh-cCCCCCCCccc
Q 028584 147 ACEQEECAICLERF-KVGDTLVHL-PCAHRFHARCLLPWLA-TNAHNCPCCRM 196 (207)
Q Consensus 147 ~~~~~~C~ICle~~-~~~~~~~~l-pC~H~Fh~~Ci~~wl~-~~~~~CP~CR~ 196 (207)
..++..|.||...- .+++.++.- .|.-.||..|+..-.. ...-.||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34667799998753 222334333 4899999999975321 11127888864
No 136
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.38 E-value=10 Score=24.22 Aligned_cols=35 Identities=26% Similarity=0.669 Sum_probs=18.1
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
.|..|-+.+... . +..-+..||..|+ +|-.|..+|
T Consensus 7 ~C~~C~~~I~~~-~--~~a~~~~~H~~CF---------~C~~C~~~L 41 (70)
T 2d8z_A 7 GCVQCKKPITTG-G--VTYREQPWHKECF---------VCTACRKQL 41 (70)
T ss_dssp BCSSSCCBCCSS-E--EESSSSEEETTTS---------BCSSSCCBC
T ss_pred CCcccCCeeccc-e--EEECccccCCCCC---------ccCCCCCcC
Confidence 466666665432 2 2223556666653 565665554
No 137
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=48.36 E-value=1.7 Score=32.43 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=28.1
Q ss_pred ccccccccccccccCCeeEE-cCCCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
+...|.+|...|..-..--+ -.||.+||..|......... +|-.|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vR-VC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPR-LCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CC-EEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCce-ECHHHHH
Confidence 44579999998864211122 24999999999766544333 6777744
No 138
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.20 E-value=7.7 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=23.5
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
...|..|-+.+.. + .+..-+..||..|+ +|-.|...|
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF---------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY---------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT---------SCSSSCCCH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC---------eeCCCCCCC
Confidence 3558888887764 2 22335677887774 677776655
No 139
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=47.56 E-value=3.7 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.611 Sum_probs=18.0
Q ss_pred CCCCcccHHhHHHHHhcCCCCCCCcccCccCCCC
Q 028584 170 PCAHRFHARCLLPWLATNAHNCPCCRMQILDPAA 203 (207)
Q Consensus 170 pC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~~~~ 203 (207)
.||+.|. +. +.... .||.|+...+..+.
T Consensus 72 ~CG~~F~----~~-~~kPs-rCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 72 KCGFVFK----AE-INIPS-RCPKCKSEWIEEPR 99 (105)
T ss_dssp TTCCBCC----CC-SSCCS-SCSSSCCCCBCCCC
T ss_pred hCcCeec----cc-CCCCC-CCcCCCCCccCCcc
Confidence 5888881 11 12223 89999998876654
No 140
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.33 E-value=7.9 Score=25.92 Aligned_cols=40 Identities=30% Similarity=0.677 Sum_probs=25.9
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
....|..|-+.+...+.+. .-+..||..|+ +|-.|...|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF---------RCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC---------BCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC---------EEcCCCCCcC
Confidence 3456999988876544333 24667888884 6777766554
No 141
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.17 E-value=14 Score=24.90 Aligned_cols=38 Identities=26% Similarity=0.604 Sum_probs=24.3
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|..|-+.+. ++.+. .-+..||..|+ .|-.|...|.
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~CF---------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--ALGKSWHPEEF---------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--ETTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ceEEE--ECCccccccCC---------ccCCCCCCCC
Confidence 345888888774 33322 34677887774 7777776664
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.04 E-value=8.6 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.530 Sum_probs=23.0
Q ss_pred ccccccccccccc-c-CCeeEEcCCCCcccHHhHH
Q 028584 149 EQEECAICLERFK-V-GDTLVHLPCAHRFHARCLL 181 (207)
Q Consensus 149 ~~~~C~ICle~~~-~-~~~~~~lpC~H~Fh~~Ci~ 181 (207)
++..|.+|...|. . +....-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4567999999983 2 2233344589999988864
No 143
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.37 E-value=10 Score=25.13 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=23.4
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|..|-+.+. ++. +..-+..||..|+ +|-.|..+|.
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF---------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS---------BCSSSCCBCC
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC---------EeCCCCCccC
Confidence 356888887776 222 2234667777773 6777766654
No 144
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=45.99 E-value=11 Score=23.86 Aligned_cols=38 Identities=21% Similarity=0.516 Sum_probs=25.7
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..|+.|-+.+. ++ .+..-+..||..|+ .|-.|..+|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC---------EECCCCCCCCC
Confidence 45888888876 32 23345678888874 78888776653
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.25 E-value=13 Score=23.75 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.5
Q ss_pred CCcccHHhHHHHH
Q 028584 172 AHRFHARCLLPWL 184 (207)
Q Consensus 172 ~H~Fh~~Ci~~wl 184 (207)
+..||..|..+.+
T Consensus 53 ~~~yC~~cy~~~~ 65 (72)
T 1x61_A 53 RRAYCEGCYVATL 65 (72)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CeEECHHHHHHHH
Confidence 4455555554444
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.64 E-value=9.6 Score=30.62 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=23.3
Q ss_pred cccccccccccccCCeeEEc-CCCCcccHHhHHH
Q 028584 150 QEECAICLERFKVGDTLVHL-PCAHRFHARCLLP 182 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~ 182 (207)
+..|.+|...|..-..--+- .||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899999998643222222 3999999999754
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.26 E-value=13 Score=23.92 Aligned_cols=39 Identities=23% Similarity=0.625 Sum_probs=23.6
Q ss_pred cccccccccccc--CCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKV--GDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+.. .+.++ ..-+..||..|+ .|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~CF---------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYI-SFEERQWHNDCF---------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCE-ECSSCEECTTTC---------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceE-EECCcccCcccC---------EeccCCCcCC
Confidence 458888877764 22222 225677887774 6777776654
No 148
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=43.90 E-value=4.6 Score=33.27 Aligned_cols=44 Identities=34% Similarity=0.672 Sum_probs=24.1
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC----CCCCCccc
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA----HNCPCCRM 196 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~~CP~CR~ 196 (207)
.|.+|...-.. ..+..- .|...||..|+.+=+.... -.||.|..
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57788753221 222222 4899999999985443211 16999964
No 149
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.76 E-value=9.3 Score=27.53 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.7
Q ss_pred ccHHhHHHHHhc
Q 028584 175 FHARCLLPWLAT 186 (207)
Q Consensus 175 Fh~~Ci~~wl~~ 186 (207)
||..||..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 150
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=43.68 E-value=9.4 Score=27.47 Aligned_cols=12 Identities=42% Similarity=1.013 Sum_probs=10.7
Q ss_pred ccHHhHHHHHhc
Q 028584 175 FHARCLLPWLAT 186 (207)
Q Consensus 175 Fh~~Ci~~wl~~ 186 (207)
||..||..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 151
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=43.53 E-value=12 Score=23.70 Aligned_cols=41 Identities=22% Similarity=0.604 Sum_probs=28.1
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
...|..|...+...+.++. .-+..||..|. .|-.|..+|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC---------cccCCCCCCCC
Confidence 3569999998876544433 24667888885 78888777643
No 152
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.19 E-value=13 Score=25.16 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=26.3
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
...|..|-+.+.. +. +..-+..||..|+ .|-.|...|..
T Consensus 25 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AV--VKARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CC--EESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cE--EEECCceECccCC---------EecCCCCCCCC
Confidence 4568888888764 22 2235678888884 78888777653
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.00 E-value=11 Score=30.62 Aligned_cols=34 Identities=29% Similarity=0.598 Sum_probs=23.8
Q ss_pred cccccccccccccCCeeEEc-CCCCcccHHhHHHH
Q 028584 150 QEECAICLERFKVGDTLVHL-PCAHRFHARCLLPW 183 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~w 183 (207)
...|.+|...|..-..--+- .||.+||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999998743222222 49999999997643
No 154
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=41.71 E-value=4 Score=29.27 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=27.5
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHhcCC---CCCCCcccC
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLATNA---HNCPCCRMQ 197 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~ 197 (207)
.|.||...-... .++.- .|...||..|+.+-+.... -.||.|..-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 566776653322 23333 4899999999976443221 279988653
No 155
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.19 E-value=1.5 Score=32.05 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=29.1
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCC---CCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNA---HNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~~CP~CR~~l~ 199 (207)
..|.||...-..++.+.--.|...||..|+.+=+.... -.||.|...+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 35778876533332222224899999999985333221 16888865443
No 156
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.82 E-value=16 Score=23.81 Aligned_cols=39 Identities=21% Similarity=0.602 Sum_probs=23.1
Q ss_pred cccccccccccc--CCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKV--GDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+.. .... +..-+..||..|+ .|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC---------ChhhCCCcCC
Confidence 458888887763 1122 2224667887774 6766766554
No 157
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.32 E-value=2.6 Score=27.36 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=25.2
Q ss_pred ccccccccccccCCeeEEcC-----CCCcccHHhHHHHHhcC
Q 028584 151 EECAICLERFKVGDTLVHLP-----CAHRFHARCLLPWLATN 187 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lp-----C~H~Fh~~Ci~~wl~~~ 187 (207)
..|+-|...++..+.-..+. |++.||..|+.+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 45888888776544333332 67889999988886543
No 158
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=39.18 E-value=9.1 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=11.2
Q ss_pred cccccccccccCCeeEEcCCCCcccHHh
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARC 179 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~C 179 (207)
.|..|-+.+..++.+.. -+..||..|
T Consensus 9 ~C~~C~~~I~~~~~~~a--~~~~~H~~C 34 (81)
T 1a7i_A 9 KCGACGRTVYHAEEVQC--DGRSFHRCC 34 (81)
T ss_dssp BCSSSCCBCSSTTEEEE--TTEEEESSS
T ss_pred cCcCcCccccCceeEEe--CCccccccc
Confidence 35555555543332211 344455544
No 159
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.74 E-value=12 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=12.2
Q ss_pred cccccccccccCCeeEEcCCCCcccHHh
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARC 179 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~C 179 (207)
.|+-|-..+.. + .+..-+..||..|
T Consensus 7 ~C~~C~~~I~~-~--~v~a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITG-R--VLEAGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSS-C--CBCCSSCCBCTTT
T ss_pred CcccCCCEecC-e--eEEeCCCCCCCCc
Confidence 46666665542 1 1122455566655
No 160
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.04 E-value=9.6 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.524 Sum_probs=17.3
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.|..|-+.+.. +.+. .-+..||..|+ +|-.|..+|.
T Consensus 7 ~C~~C~~~I~~-~~~~--a~~~~~H~~CF---------~C~~C~~~L~ 42 (70)
T 2d8x_A 7 GCHQCGEFIIG-RVIK--AMNNSWHPECF---------RCDLCQEVLA 42 (70)
T ss_dssp BCSSSCCBCCS-CCEE--ETTEEECTTTS---------BCSSSCCBCS
T ss_pred cCccCCCEecc-eEEE--ECcccccccCC---------EeCCCCCcCC
Confidence 46666665542 2221 13455665553 5555555443
No 161
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.57 E-value=6.9 Score=34.19 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred ccccccccccccccCCeeEE-cCCCCcccHHhHHHHHhcC------CCCCCCcccCc
Q 028584 149 EQEECAICLERFKVGDTLVH-LPCAHRFHARCLLPWLATN------AHNCPCCRMQI 198 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~------~~~CP~CR~~l 198 (207)
+...|.+|...|..-..--+ -.||++||..|....+... ..+|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45679999998863211111 2499999999997654211 12688886544
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.05 E-value=32 Score=23.14 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=11.2
Q ss_pred cccccccccccCCeeEEcCCCCcccHHh
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARC 179 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~C 179 (207)
.|..|-+.+...+.+ ..-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 17 TCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp BCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred cCccCCCccCCceeE--EECCCEECCCC
Confidence 455555555432221 22344455444
No 163
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.90 E-value=11 Score=23.99 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=4.9
Q ss_pred cccccccccc
Q 028584 152 ECAICLERFK 161 (207)
Q Consensus 152 ~C~ICle~~~ 161 (207)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 3555555443
No 164
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=34.96 E-value=16 Score=26.63 Aligned_cols=39 Identities=28% Similarity=0.559 Sum_probs=28.2
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
...|..|-+.+.....+. .-+..||..|+ +|-.|...|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc---------CcCcCCCccc
Confidence 467999999887542222 35778999884 8888988775
No 165
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=34.93 E-value=16 Score=24.01 Aligned_cols=46 Identities=22% Similarity=0.568 Sum_probs=28.8
Q ss_pred ccccccccccccccCCeeEEc-CCCCcccHHhHHHHHhc--CCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLAT--NAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~--~~~~CP~CR~ 196 (207)
+...| ||..... ++.++.- .|..+||..|+.--... ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45567 9988654 3334443 49999999998542211 1237988853
No 166
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.22 E-value=14 Score=24.29 Aligned_cols=36 Identities=22% Similarity=0.582 Sum_probs=19.1
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.|..|-+.+. +.. +..-+..||..|+ .|-.|...|.
T Consensus 17 ~C~~C~~~I~-~~~--~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMT-GPF--MVAGEFKYHPECF---------ACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCC-SCC--BCCTTCCBCTTSC---------BCTTTCCBCC
T ss_pred cCccCCCCcC-ceE--EEECCceeccccC---------CccCCCCccC
Confidence 4666666665 211 1223556666663 5666665553
No 167
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=32.28 E-value=12 Score=21.59 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=10.2
Q ss_pred cccccccccccccC
Q 028584 150 QEECAICLERFKVG 163 (207)
Q Consensus 150 ~~~C~ICle~~~~~ 163 (207)
...|+||+..|...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46788888887653
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.09 E-value=24 Score=27.10 Aligned_cols=32 Identities=22% Similarity=0.569 Sum_probs=23.3
Q ss_pred cccccccccccccc--CCeeEEcCCCCcccHHhH
Q 028584 149 EQEECAICLERFKV--GDTLVHLPCAHRFHARCL 180 (207)
Q Consensus 149 ~~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~Ci 180 (207)
++..|.+|...|.- +....-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46779999997632 333444569999999997
No 169
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.08 E-value=19 Score=23.45 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=21.1
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+... . +..-+..||..|+ .|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~-~--v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-C--EESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-E--EEECCchhhhhhC---------CcccCCCcCC
Confidence 3477777766532 1 2234566777663 6666666653
No 170
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.61 E-value=13 Score=26.89 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=27.0
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
+-..|..|...|..++.. ...=+..||..|....+.. .|..|..
T Consensus 35 ~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~~---~~~~~~~ 78 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTKI---NGGSGGS 78 (123)
T ss_dssp TTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHHH---HTCCCCC
T ss_pred ccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhcc---ccCCCCC
Confidence 455778887777544333 3335677888888777643 3555543
No 171
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.40 E-value=16 Score=24.06 Aligned_cols=37 Identities=22% Similarity=0.697 Sum_probs=23.7
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|+.|.+.+. ++.+. .-+..||..|+ +|-.|..+|.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF---------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF---------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS---------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC---------ccccCCCCCC
Confidence 46999988876 33332 24677888774 6666666554
No 172
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.44 E-value=14 Score=20.40 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=18.1
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhH
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCL 180 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci 180 (207)
..|+.|...+...+.+. --+..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 35888888765444332 24678888873
No 173
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.01 E-value=40 Score=26.11 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=25.3
Q ss_pred ccccccccccccccccCCeeEEc---CCCCcccHHhHHHHHhc
Q 028584 147 ACEQEECAICLERFKVGDTLVHL---PCAHRFHARCLLPWLAT 186 (207)
Q Consensus 147 ~~~~~~C~ICle~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~ 186 (207)
+-.+..|.||-+- ..++.- .|...||..||..++..
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3456679999864 234433 38899999999988543
No 174
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.27 E-value=31 Score=24.70 Aligned_cols=50 Identities=6% Similarity=-0.056 Sum_probs=33.1
Q ss_pred cccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 150 QEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
-..|..|...|..........=+..||..|....+.... .|-.|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-SSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-ccccCCCCcCc
Confidence 356888888775210112233567899999988765543 79999888764
No 175
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.26 E-value=41 Score=22.19 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=28.7
Q ss_pred cccccccccccCCeeEEc-CCCCcccHHhHHHHHh----cCCCCCCCcccC
Q 028584 152 ECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLA----TNAHNCPCCRMQ 197 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~----~~~~~CP~CR~~ 197 (207)
.-.||...+..+..++.- .|...||..|+.---. .....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344898766433344443 4999999999943211 122489999754
No 176
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=29.01 E-value=7.4 Score=24.09 Aligned_cols=42 Identities=21% Similarity=0.570 Sum_probs=24.9
Q ss_pred cccccccccCCeeEEc-CCCCcccHHhHHHHHhc--CCCCCCCccc
Q 028584 154 AICLERFKVGDTLVHL-PCAHRFHARCLLPWLAT--NAHNCPCCRM 196 (207)
Q Consensus 154 ~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~--~~~~CP~CR~ 196 (207)
.||..... +..++.- .|...||..|+.--... ....||.|+.
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 36776543 3233333 48999999998532211 1237998864
No 177
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.87 E-value=22 Score=23.30 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=24.5
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+...+.+ +..-+..||..|+ .|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE-LFYEDRHFHEGCF---------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCB-CCCSSCCCBTTTS---------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEE-EEeCCccccccCC---------eecCCCCccC
Confidence 4588888887632222 1224677888774 6777776664
No 178
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.27 E-value=17 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=21.6
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|..|-+.+.. +.+. .-+..||..|+ +|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~-~~v~--a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS--AMDTVWHPECF---------VCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCS-SCEE--ETTEEECTTTC---------BCSSSCCBSC
T ss_pred CccccCCCeecc-eeEE--ECCCeEecCcC---------ChhhCCCCCC
Confidence 357777777653 2222 23556777663 6777766664
No 179
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.14 E-value=19 Score=23.70 Aligned_cols=37 Identities=24% Similarity=0.608 Sum_probs=20.3
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|+.|-+.+.. ..+ ..-+..||..|+ +|..|..+|.
T Consensus 16 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD-RIL--RAMGKAYHPGCF---------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTTC---------BCSSSCCBCT
T ss_pred CccccCCCeecc-eeE--EECCccccHHhc---------CcccCCCccC
Confidence 447777766652 222 123556676663 6666666554
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.12 E-value=29 Score=22.38 Aligned_cols=40 Identities=23% Similarity=0.591 Sum_probs=27.1
Q ss_pred cccccccccccc---CCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 151 EECAICLERFKV---GDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 151 ~~C~ICle~~~~---~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
..|+.|-+.+.. ... .+..-+..||..|+ .|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC---------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC---------EehhcCCCCCC
Confidence 569999988874 212 22224678998884 78889887753
No 181
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.79 E-value=39 Score=22.89 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=28.7
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
+-..|..|...|... . ....=+..||..|..+. .. ..|..|...|.+
T Consensus 32 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~cy~~~--~~-~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANE-T-FVAKDNKILCNKCTTRE--DS-PKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSS-C-CEEETTEEECHHHHTTC--CC-CBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcC-e-eECcCCEEEChhHhhhh--cC-CccccCCCcccc
Confidence 445677887777432 1 12224667888876432 22 389999888863
No 182
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.68 E-value=3.3 Score=29.82 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=23.9
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCcc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
..|++|..++.-. =++.+|..|-... .... .||-|..+|.
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~f-~~~a-~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEFI-EMKA-LCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCEE-EEEE-ECTTTCSBCE
T ss_pred ccCccCCCcceec-------CCEEECccccchh-hccc-cCcchhhHHH
Confidence 5699999886421 2233455664332 2222 7999988774
No 183
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=25.94 E-value=14 Score=19.90 Aligned_cols=11 Identities=55% Similarity=0.724 Sum_probs=8.1
Q ss_pred Ccchhhhhccc
Q 028584 6 PGVECARRRRI 16 (207)
Q Consensus 6 ~~~~~~~rrr~ 16 (207)
+-||||-=||+
T Consensus 4 l~vecaqlr~~ 14 (27)
T 2jm6_A 4 LKDECAQLRRI 14 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34899977775
No 184
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.55 E-value=14 Score=33.28 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=29.6
Q ss_pred ccccccccccccCCeeEEc-CCCCcccHHhHHHHHhc----CCCCCCCcccCc
Q 028584 151 EECAICLERFKVGDTLVHL-PCAHRFHARCLLPWLAT----NAHNCPCCRMQI 198 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~----~~~~CP~CR~~l 198 (207)
....||...+..+..++.- .|...||..|+.---.. ....||.|+...
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 3456898876433344444 49999999999321111 123899997543
No 185
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=24.42 E-value=31 Score=23.76 Aligned_cols=33 Identities=24% Similarity=0.548 Sum_probs=20.5
Q ss_pred cccccccccccccCCeeEE--cCCCCcccHHhHHHH
Q 028584 150 QEECAICLERFKVGDTLVH--LPCAHRFHARCLLPW 183 (207)
Q Consensus 150 ~~~C~ICle~~~~~~~~~~--lpC~H~Fh~~Ci~~w 183 (207)
...|.||-+.- .+-.+.- -.|.-.||..|...-
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 35699996531 1322221 248899999998653
No 186
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.16 E-value=34 Score=21.43 Aligned_cols=37 Identities=19% Similarity=0.624 Sum_probs=24.1
Q ss_pred cccccccccccC-CeeEEcCCCCccc--HHhHHHHHhcCCCCCCCcccCcc
Q 028584 152 ECAICLERFKVG-DTLVHLPCAHRFH--ARCLLPWLATNAHNCPCCRMQIL 199 (207)
Q Consensus 152 ~C~ICle~~~~~-~~~~~lpC~H~Fh--~~Ci~~wl~~~~~~CP~CR~~l~ 199 (207)
.|+.|-+.+..+ +.+.. -+..|| ..|. +|-.|+.+|.
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF---------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTECF---------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTTS---------BCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCCE---------ECCCCCCcCC
Confidence 488888877653 22222 467788 8773 7777777664
No 187
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.68 E-value=42 Score=23.95 Aligned_cols=9 Identities=22% Similarity=0.995 Sum_probs=4.2
Q ss_pred CCCCcccCc
Q 028584 190 NCPCCRMQI 198 (207)
Q Consensus 190 ~CP~CR~~l 198 (207)
.|-.|...|
T Consensus 96 ~C~~C~~~L 104 (131)
T 2xjy_A 96 KCAACQKHF 104 (131)
T ss_dssp BCTTTCCBC
T ss_pred ccCCCCCCC
Confidence 444454444
No 188
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.20 E-value=36 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.726 Sum_probs=19.3
Q ss_pred cccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCc
Q 028584 152 ECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQI 198 (207)
Q Consensus 152 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l 198 (207)
.|..|.+.+...+.++. .-++.||..|. .|-.|...|
T Consensus 71 ~C~~C~~~I~~~e~~i~-a~~~~~H~~CF---------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-AQGNVYHLKCF---------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE-ETTEEECGGGC---------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEE-cCCCEEeCCCC---------eECCCCCCC
Confidence 46666666553332222 24566666662 555555544
No 189
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.12 E-value=34 Score=26.43 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=18.8
Q ss_pred ccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCccc
Q 028584 151 EECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRM 196 (207)
Q Consensus 151 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~ 196 (207)
..|..|...|..+. ....=+..||..|..+.+ .. .|..|..
T Consensus 143 F~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~f--~~-kc~~C~~ 183 (192)
T 1b8t_A 143 FRCAKCGKSLESTT--LADKDGEIYCKGCYAKNF--GP-KGFGFGQ 183 (192)
T ss_dssp CBCTTTCCBCCSSS--EEEETTEEEEHHHHHHHT--CC-CCCCCCC
T ss_pred CCccccCCCCCCCc--ccccCCEEeCHHHHHHhc--CC-cCCCCCC
Confidence 34555555554321 112234556666665543 22 4555544
No 190
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.44 E-value=44 Score=21.70 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=26.7
Q ss_pred ccccccccccc-ccccCCeeEEcCCCCcccHHhHHHHHhcCCC---CCCCcc
Q 028584 148 CEQEECAICLE-RFKVGDTLVHLPCAHRFHARCLLPWLATNAH---NCPCCR 195 (207)
Q Consensus 148 ~~~~~C~ICle-~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~---~CP~CR 195 (207)
.+...|.||+. .|.++..-.-.-|.-.||..|--.|-...+. .|-+|+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCR 58 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhh
Confidence 35678999997 4554422222236667777776555333222 355554
No 191
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.36 E-value=52 Score=23.29 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=32.7
Q ss_pred ccccccccccccccCCeeEEcCCCCcccHHhHHHHHhcCCCCCCCcccCccC
Q 028584 149 EQEECAICLERFKVGDTLVHLPCAHRFHARCLLPWLATNAHNCPCCRMQILD 200 (207)
Q Consensus 149 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~~CP~CR~~l~~ 200 (207)
+-..|..|...|... .....=+..||..|.... ... .|..|..+|.+
T Consensus 29 ~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~-~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAV-VCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCC-BCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCc-cCcccCCcCCc
Confidence 456788888887632 223345778999998664 233 89999998874
No 192
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.62 E-value=7.5 Score=26.36 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=13.1
Q ss_pred CCCCcccHHhHHHHH
Q 028584 170 PCAHRFHARCLLPWL 184 (207)
Q Consensus 170 pC~H~Fh~~Ci~~wl 184 (207)
.|++.||..|...|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 489999999999883
Done!