Query 028585
Match_columns 207
No_of_seqs 201 out of 1034
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 23:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_F RP14, S2, YS8, 40S ribo 100.0 3.8E-78 1.3E-82 517.3 15.4 204 1-207 22-225 (225)
2 2xzm_G Ribosomal protein S7 co 100.0 2.2E-75 7.4E-80 493.7 20.1 193 15-207 7-200 (200)
3 2zkq_g 40S ribosomal protein S 100.0 1.4E-77 4.8E-82 508.2 0.0 190 17-207 15-204 (204)
4 1iqv_A Ribosomal protein S7; R 100.0 1.4E-73 4.9E-78 486.4 17.9 202 1-207 1-218 (218)
5 1rss_A Ribosomal protein S7; R 100.0 1.6E-50 5.6E-55 329.3 16.6 137 62-207 8-144 (151)
6 3r8n_G 30S ribosomal protein S 100.0 1.3E-50 4.4E-55 329.8 16.0 139 60-207 10-148 (151)
7 1hus_A Ribosomal protein S7; R 100.0 2.7E-50 9.2E-55 329.2 16.5 139 60-207 10-148 (155)
8 3gty_S TF, 30S ribosomal prote 100.0 2.4E-50 8.3E-55 327.6 15.4 137 62-207 6-142 (149)
9 3i1m_G 30S ribosomal protein S 100.0 1.9E-49 6.4E-54 330.5 15.1 139 60-207 11-149 (179)
10 3bbn_G Ribosomal protein S7; s 100.0 6.3E-50 2.1E-54 327.0 9.6 138 61-207 12-149 (155)
11 3ezx_A MMCP 1, monomethylamine 20.8 1E+02 0.0035 24.9 4.3 28 69-101 3-30 (215)
12 3g36_A Protein DPY-30 homolog; 20.1 1.3E+02 0.0045 19.7 3.9 34 94-127 19-52 (55)
No 1
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=100.00 E-value=3.8e-78 Score=517.28 Aligned_cols=204 Identities=69% Similarity=1.051 Sum_probs=191.8
Q ss_pred CccccccCCCCCCCCCCcccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhh
Q 028585 1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM 80 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM 80 (207)
|+++...+|.+......++|||||||++||+|+||||++||+++ +++|+|||+|||++|+|+|++||+|+||||+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~---~~~~~pht~gr~~~krf~K~~~piv~rliN~LM 98 (225)
T 3u5c_F 22 PVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVR---QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLM 98 (225)
T ss_dssp CCCCSSCCCHHHHHHHHSSCCSSSCCCSSCCCSSTTTBTTBCCC---SCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHS
T ss_pred hhhhccccchhhhccchhhhhcCCCCCcceEEeccchhheeecc---CCceecccCCCccccCCCCCCCcHHHHHHHHHH
Confidence 34444444444332235799999999999999999999999997 599999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeecChhHHHHHHHHHHHHH
Q 028585 81 MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTG 160 (207)
Q Consensus 81 ~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~vsp~rr~~lAirwI~~~ 160 (207)
++|+|+|||++|++||++||++|+++|++|||+||++||+|++|+++++|+|+||.+||+||+|+|.||+++||+||+++
T Consensus 99 ~~~~~~GKKs~A~~Ivy~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~a 178 (225)
T 3u5c_F 99 MNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIG 178 (225)
T ss_dssp CSGGGSSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHH
T ss_pred hcCccCCcHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 161 ARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 161 ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|++++||++++|++|||+|||+|++|+|+||||+||||+||||+|||
T Consensus 179 ark~~~R~~ksmaerLA~ELidAa~~~G~s~AiKKKee~HRmAeANR 225 (225)
T 3u5c_F 179 AREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225 (225)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred HHhhccCCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998
No 2
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=100.00 E-value=2.2e-75 Score=493.74 Aligned_cols=193 Identities=59% Similarity=1.000 Sum_probs=186.2
Q ss_pred CCCcccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhhcCCCCCccHHHHHH
Q 028585 15 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 94 (207)
Q Consensus 15 ~~~~~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~~g~~~GKK~~A~r 94 (207)
...+++||||||++||+|.||||++||+++..|+++++|||+|||++++|++++||+|++|||+||++|||+|||++|++
T Consensus 7 ~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~ 86 (200)
T 2xzm_G 7 FATQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIK 86 (200)
T ss_dssp --CCCCGGGSCCGGGCCCCSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHHHH
T ss_pred cchhccccCCcCCCCeeecccchhhceeeccccCceecCCCcccccccccccccChHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 44689999999999999999999999999546899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHH
Q 028585 95 IVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAE 174 (207)
Q Consensus 95 Iv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e 174 (207)
||++||++|+++|++||++||++||+|++|++|++++++||.+|||||+|+|.||+++||+||+++|++++||++++|++
T Consensus 87 Iv~~A~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e 166 (200)
T 2xzm_G 87 VVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAE 166 (200)
T ss_dssp HHHHHHHHHHHHHCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC-CCChhhhHhhHHHHHHHHhcC
Q 028585 175 CLADELINAAKG-SSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 175 ~LA~EiI~A~~~-~g~s~aikKK~elhr~A~aNR 207 (207)
|||+|||+|++| +++|+||+||||+||||+|||
T Consensus 167 ~LA~EiidAa~~~~~~g~AikKKee~hrmAeANR 200 (200)
T 2xzm_G 167 TLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200 (200)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCcchhhHHHHHHHHHhcC
Confidence 999999999999 666689999999999999998
No 3
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.4e-77 Score=508.22 Aligned_cols=190 Identities=81% Similarity=1.222 Sum_probs=186.7
Q ss_pred CcccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhhcCCCCCccHHHHHHHH
Q 028585 17 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV 96 (207)
Q Consensus 17 ~~~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv 96 (207)
+++|||||||++||+|+||||++||+++ .|+++|+|||+|||++|+|+|++||+|++|||+||++|+|+|||++|++||
T Consensus 15 ~~~~lf~kw~~~~v~v~d~~l~~yi~~~-~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Iv 93 (204)
T 2zkq_g 15 PDIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIV 93 (204)
Confidence 4899999999999999999999999997 667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHH
Q 028585 97 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECL 176 (207)
Q Consensus 97 ~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~L 176 (207)
++||++|+++|++||++||++||+|++|++|++++++||.+|||||+|+|.||+++||+||+++|++++||++++|++||
T Consensus 94 y~A~~~I~~kt~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~L 173 (204)
T 2zkq_g 94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173 (204)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 177 ADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 177 A~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|+|||+|++|+|+||||+||||+||||+|||
T Consensus 174 A~ElidAa~~~g~s~AikKKee~hrmAeANR 204 (204)
T 2zkq_g 174 ADELINAAKGSSNSYAIKKKDELERVAKSNR 204 (204)
Confidence 9999999999999999999999999999998
No 4
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=100.00 E-value=1.4e-73 Score=486.42 Aligned_cols=202 Identities=43% Similarity=0.592 Sum_probs=160.1
Q ss_pred CccccccCCCCCCCCCCcccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhh
Q 028585 1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM 80 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM 80 (207)
|.|+..++|.... ..+++|||||||++||+|.||||.+||+++ |.++|||+|||++++|++++||+|++|||.||
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~lf~kws~~dv~v~dp~l~~yi~~~----p~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM 75 (218)
T 1iqv_A 1 MKEVAKPLQERFF-IPHEIKVMGRWSTEDVEVKDPSLKPYINLE----PRLLPHTHGRHAKKHFGKANVHIVERLINKVM 75 (218)
T ss_dssp ------------------CCBTTTBCCTTCCCCCTTTGGGSBCS----CC------------------CBHHHHHHHHHH
T ss_pred CccccccCccccc-ccccccccccccCCCCeecCCchhhhcccC----CccCCCcchHHHhhhcccccChHHHHHHhHhh
Confidence 6777767666632 234899999999999999999999999997 88999999999999999999999999999999
Q ss_pred c---------------CCC-CCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeec
Q 028585 81 M---------------HGR-NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDI 144 (207)
Q Consensus 81 ~---------------~g~-~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~v 144 (207)
+ +|| |+|||++|++||++||++|+++|++|||+||++||+|++|++|+++++.||++|||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~r~n~GKK~~A~~Iv~~Af~iI~~~t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqvPV~V 155 (218)
T 1iqv_A 76 RSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDI 155 (218)
T ss_dssp TTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred hccccccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeEC
Confidence 9 999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 145 SPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 145 sp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
+|.||+++||+||+++|++++||+.++|++|||+|||+|++|+|+|+||+||||+||||+|||
T Consensus 156 ~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~Aa~~~g~s~AikKKee~hRmAeaNR 218 (218)
T 1iqv_A 156 SPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHhcC
Confidence 999999999999999999999889999999999999999999999999999999999999998
No 5
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=100.00 E-value=1.6e-50 Score=329.25 Aligned_cols=137 Identities=33% Similarity=0.428 Sum_probs=131.1
Q ss_pred ccccccCchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEe
Q 028585 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQA 141 (207)
Q Consensus 62 k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vp 141 (207)
.+.++++||+|++|||.||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|++++++||.+||||
T Consensus 8 ~~dp~~~~~lv~kliN~lM~----~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqvP 83 (151)
T 1rss_A 8 QPDLVYGDVLVTAFINKIMR----DGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVP 83 (151)
T ss_dssp CCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEe
Confidence 45789999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred eecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 142 VDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 142 v~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+| +||+||||+||||+|||
T Consensus 84 v~v~~~Rr~~lAirWi~~~ar~---r~~k~m~~~La~EiidA~~~~g--~aikKKee~hrmAeaNR 144 (151)
T 1rss_A 84 MEVSPRRQQSLALRWLVQAANQ---RPERRAAVRIAHELMDAAEGKG--GAVKKKEDVERMAEANR 144 (151)
T ss_dssp EECCHHHHHHHHHHHHHHHHTT---SSCSSHHHHHHHHHHHHHTTCS--HHHHHHHHHHHHHCC--
T ss_pred eecCHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCCC--ceeehHHHHHHHHHHhH
Confidence 9999999999999999999999 6789999999999999999998 59999999999999998
No 6
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=100.00 E-value=1.3e-50 Score=329.82 Aligned_cols=139 Identities=29% Similarity=0.401 Sum_probs=133.8
Q ss_pred ccccccccCchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEE
Q 028585 60 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139 (207)
Q Consensus 60 ~~k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~ 139 (207)
.-.++++++||+|++|||+||+ +|||++|++||++||++|+++|++||++||++||+|++|++|+++.+.||.+||
T Consensus 10 ~~~~dp~~~~~lv~kliN~lM~----~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~tyq 85 (151)
T 3r8n_G 10 KILPDPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQ 85 (151)
T ss_dssp CCCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHCCSEEECCCCCSSCCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeEEEEEeeCCEEEE
Confidence 3457889999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 140 vpv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|. ||+||||+||||+|||
T Consensus 86 vPv~v~~~Rr~~lAirWii~~ar~---r~~k~m~~~LA~ElidA~~~~g~--aikKKee~hkmAeaNr 148 (151)
T 3r8n_G 86 VPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT--AVKKREDVHRMAEANK 148 (151)
T ss_dssp CEEECCHHHHHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHGG
T ss_pred EecccCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCcch--hhhHHHHHHHHHHHhh
Confidence 999999999999999999999999 78899999999999999999986 9999999999999997
No 7
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=100.00 E-value=2.7e-50 Score=329.19 Aligned_cols=139 Identities=32% Similarity=0.435 Sum_probs=133.1
Q ss_pred ccccccccCchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEE
Q 028585 60 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139 (207)
Q Consensus 60 ~~k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~ 139 (207)
.-.+.++++||+|++|||+||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|++++++||.+||
T Consensus 10 ~~~~dp~y~~~lV~kliN~lM~----~GKKs~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyq 85 (155)
T 1hus_A 10 DVLPDPIYNSKLVTRLINKIMI----DGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQ 85 (155)
T ss_dssp CCCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECC
T ss_pred CCCCCCCcCCHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEE
Confidence 3456889999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 140 vpv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+| +||+||||+||||+|||
T Consensus 86 VPv~v~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g--~aikKKee~hrmAeaNR 148 (155)
T 1hus_A 86 VPVEVRPDRRVSLGLRWLVQYARL---RNEKTMEERLANEIMDAANNTG--AAVKKREDTHKMAEANK 148 (155)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHH---SCSSSHHHHHHHHHHHHHTTCS--HHHHHHHHHHHHHHHC-
T ss_pred EeeecCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCC--ceeehHHHHHHHHHHhH
Confidence 999999999999999999999999 7789999999999999999998 49999999999999998
No 8
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-50 Score=327.59 Aligned_cols=137 Identities=31% Similarity=0.415 Sum_probs=132.9
Q ss_pred ccccccCchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEe
Q 028585 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQA 141 (207)
Q Consensus 62 k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vp 141 (207)
.+.+.++||+|++|||+||+ +|||++|++||++||++|+++|++||++||++||+|++|++|+++.+.||.+||||
T Consensus 6 ~~dp~~~~~lv~kliN~lM~----~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqvP 81 (149)
T 3gty_S 6 PPDPVFGDVLVAKLINRVMW----DGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP 81 (149)
T ss_dssp CCCSSSCCHHHHHHHHHHCB----TTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEe
Confidence 47889999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred eecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 142 VDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 142 v~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|. ||+||||+||||+|||
T Consensus 82 v~v~~~rr~~lAirWi~~~ar~---r~~k~m~~~LA~Eli~A~~~~g~--aikKKee~hkmAeaNR 142 (149)
T 3gty_S 82 IEVQEPRRTSLALRWIVEAARA---KKGRPMKEKLAEEIIAAYNNTGT--AIKKKEDTHRMAEANR 142 (149)
T ss_dssp EECCTHHHHHHHHHHHHHHHHT---CSSSCHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHTTSG
T ss_pred eecCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHHhH
Confidence 9999999999999999999999 77899999999999999999985 9999999999999997
No 9
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=100.00 E-value=1.9e-49 Score=330.51 Aligned_cols=139 Identities=29% Similarity=0.401 Sum_probs=133.8
Q ss_pred ccccccccCchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEE
Q 028585 60 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139 (207)
Q Consensus 60 ~~k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~ 139 (207)
.-.++++++||+|++|||+||+ +|||++|++||++||++|+++|++||++||++||+|++|++|+++.++||.+||
T Consensus 11 ~~~pdp~y~~~lV~kliN~lM~----~GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~AI~Nv~P~veVks~rvGG~tyq 86 (179)
T 3i1m_G 11 KILPDPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQ 86 (179)
T ss_dssp CCCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCCSSSCCC
T ss_pred cCCCCCCcCCHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEEEeeCCEEEE
Confidence 3457889999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 140 vpv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
|||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|. ||+||||+||||++||
T Consensus 87 VPv~V~p~Rr~~lAirWii~~ark---R~~k~m~erLA~ELidAa~~~G~--AikKKee~HkmAeANR 149 (179)
T 3i1m_G 87 VPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT--AVKKREDVHRMAEANK 149 (179)
T ss_dssp EEEECCTTHHHHHHHHHHHHHHTT---CCSSSHHHHHHHHHHHHHTSCSH--HHHHHHHHHHHTTTGG
T ss_pred EccccCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCcch--hhhHHHHHHHHHHHhH
Confidence 999999999999999999999999 78899999999999999999985 9999999999999997
No 10
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=6.3e-50 Score=326.99 Aligned_cols=138 Identities=30% Similarity=0.407 Sum_probs=133.5
Q ss_pred cccccccCchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEE
Q 028585 61 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQ 140 (207)
Q Consensus 61 ~k~f~k~~~piverliN~LM~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~v 140 (207)
-.+.++++|++|++|||.||+ +|||++|++||++||++|+..|++||++||++||+|++|++|++++++||.+|||
T Consensus 12 ~~~dp~y~~~lv~kliN~lM~----~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV 87 (155)
T 3bbn_G 12 AKSDPIYRNRLVNMLVNRILK----HGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQV 87 (155)
T ss_dssp CCCCTTTCCSSGGGHHHHSCC----TTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEETTEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEEEEeccCCeEEEE
Confidence 345788999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred eeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585 141 AVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 (207)
Q Consensus 141 pv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR 207 (207)
||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|+ ||+||||+||||+|||
T Consensus 88 Pv~v~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g~--aikKKee~hkmAeaNR 149 (155)
T 3bbn_G 88 PIEIGSTQGKALAIRWLLGAARK---RPGRNMAFKLSSELVDAAKGSGD--AVRKKEETHRMAEANR 149 (155)
T ss_dssp EEECCHHHHHHHHTTHHHHHHHT---CCSSCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHSSSSG
T ss_pred eeecCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHH
Confidence 99999999999999999999999 77899999999999999999997 9999999999999997
No 11
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.79 E-value=1e+02 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=20.5
Q ss_pred chhHHHHHHHhhcCCCCCccHHHHHHHHHHHHH
Q 028585 69 CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAME 101 (207)
Q Consensus 69 ~piverliN~LM~~g~~~GKK~~A~rIv~~af~ 101 (207)
..++++|...|+. |.+..+..++.++++
T Consensus 3 ~~~~~~l~~al~~-----~d~~~~~~~~~~al~ 30 (215)
T 3ezx_A 3 QEIFDKLRDAIVN-----QNVAGTPELCKEALA 30 (215)
T ss_dssp HHHHHHHHHHHHT-----TCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 4567778877776 777777777777764
No 12
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=20.06 E-value=1.3e+02 Score=19.65 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccc
Q 028585 94 RIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 127 (207)
Q Consensus 94 rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e 127 (207)
-++.++|..+.+.-..|||..|-+-+-.-.|..+
T Consensus 19 p~L~~GL~~lak~rP~DPi~~LA~~Ll~~~~~~~ 52 (55)
T 3g36_A 19 PILLQGMAVLAKERPPNPIEFLASYLLKNKAQFE 52 (55)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhCcccc
Confidence 3667788888888899999999998887777654
Done!