RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028585
(207 letters)
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 201
Score = 229 bits (586), Expect = 9e-78
Identities = 86/205 (41%), Positives = 117/205 (57%), Gaps = 20/205 (9%)
Query: 19 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNS 78
+K+ RW+ EDV+V D SL YI ++ +PHT GR++ K F KA IVERL N
Sbjct: 1 IKVMGRWSTEDVEVKDPSLKPYINLEP----RLLPHTHGRHAKKHFGKANVHIVERLINK 56
Query: 79 LMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINS 122
+M G + N KK+ A +VK A +II T +NPIQV+V A+ N+
Sbjct: 57 VMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 116
Query: 123 GPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELIN 182
PRED T + G+ AVDISPLRR++ A+ I GA +R + AE LA+E+I
Sbjct: 117 APREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 176
Query: 183 AAKGSSNSYAIKKKDEIERVAKANR 207
AA SYA KK EIER+A+++R
Sbjct: 177 AANKDPKSYAYSKKLEIERIAESSR 201
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
[TaxId: 274]}
Length = 145
Score = 123 bits (310), Expect = 8e-37
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 70 PIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 129
+V N +M G KK +A RI A +II T Q P++V AV N PR +
Sbjct: 10 VLVTAFINKIMRDG----KKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVR 65
Query: 130 RIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189
G + +++SP R+ + A+ + A R + A +A EL++AA+G
Sbjct: 66 SRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAVRIAHELMDAAEG--K 120
Query: 190 SYAIKKKDEIERVAKANR 207
A+KKK+++ER+A+ANR
Sbjct: 121 GGAVKKKEDVERMAEANR 138
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 119 bits (301), Expect = 1e-35
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 70 PIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 129
+V RL N +M+ G KK A +I+ A +II T ++P++V A+ N P +
Sbjct: 12 KLVTRLINKIMIDG----KKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVR 67
Query: 130 RIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189
G + V++ P RRV+ + + AR RN KT+ E LA+E+++AA
Sbjct: 68 ARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRNEKTMEERLANEIMDAANN--T 122
Query: 190 SYAIKKKDEIERVAKAN 206
A+KK+++ ++A+AN
Sbjct: 123 GAAVKKREDTHKMAEAN 139
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 115 bits (289), Expect = 1e-33
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 70 PIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 129
++ + N LM+ G KK A IV A+E + + ++ ++ A+ N P +
Sbjct: 19 ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVK 74
Query: 130 RIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189
G + V++ P+RR A+ I AR+ R K++A LA+EL +AA+
Sbjct: 75 SRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAEN--K 129
Query: 190 SYAIKKKDEIERVAKANR 207
A+KK++++ R+A+AN+
Sbjct: 130 GTAVKKREDVHRMAEANK 147
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 26.4 bits (58), Expect = 2.5
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 96 VKHAMEIIHLLTDQNPIQ-VIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154
+ A+EI+ LL I V+VD+V PR + + QA +S R AI
Sbjct: 120 GEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAI 179
Query: 155 Y 155
Sbjct: 180 L 180
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.9 bits (57), Expect = 2.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 27 FEDVQVNDISLSDYIGV 43
F+D V + +LSD+ GV
Sbjct: 17 FDDANVQNRTLSDWDGV 33
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.0 bits (57), Expect = 4.4
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 35 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 94
I+ +D + A H Y TA + R A ER ++ ++ +++A
Sbjct: 371 ITTADNAKIPGAYHIDYQTATAIESAKTAIRMAIEAFKERKESNRPVYIPQIKNRVVAGW 430
Query: 95 IVKHAMEIIHLLTDQNPIQVIVDAVIN 121
++ +++ QNPI+V+ A+++
Sbjct: 431 SLEALTKLLATQNAQNPIRVLNQAILD 457
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 25.9 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAKA 205
A+ LA L A +G + SY IK + ++ +AK
Sbjct: 94 AKHLAHTLKKAVQGKAASYMIKDRTKLHSIAKR 126
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 160
Score = 25.0 bits (53), Expect = 5.1
Identities = 14/134 (10%), Positives = 38/134 (28%), Gaps = 7/134 (5%)
Query: 25 WTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR 84
+T + ++L + + + P K + + + + +
Sbjct: 11 FTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAI 70
Query: 85 NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATR-------IGSAGVV 137
+ + +LL+D N + + V + + + G V
Sbjct: 71 SVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTV 130
Query: 138 RRQAVDISPLRRVN 151
+ V +PL +
Sbjct: 131 AYKWVTDNPLNEPD 144
>d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase HisE
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 87
Score = 23.9 bits (52), Expect = 7.2
Identities = 4/43 (9%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 76 TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA 118
T + + + G + ++++ A E+ ++ + +
Sbjct: 24 TVAAL----DGGVHALGKKLLEEAGEVWLAAEHESNDALAEEI 62
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 287
Score = 24.7 bits (53), Expect = 8.6
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 9 SQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIG------VQAAKHATYVPHTAGRYSVK 62
+ DPS P+YD +W +++ DI++ +G V + +VK
Sbjct: 1 AMDPSSPNYD-----KW---EMERTDITMKHKLGGGQYGEVYEGVW----KKYSLTVAVK 48
Query: 63 RFRK 66
++
Sbjct: 49 TLKE 52
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 24.5 bits (53), Expect = 9.6
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 96 VKHAMEIIHLLTDQNPIQ-VIVDAVINSGPREDATRIGSAGVVRRQAVDIS 145
+ A+EI L + ++VD+V P+ + + A +S
Sbjct: 117 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.368
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 741,372
Number of extensions: 32728
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 12
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)