BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028586
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
           With Cortisol
          Length = 371

 Score = 31.6 bits (70), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 120 GIAKILGTLASLVGVMVIAFYKGPAVP-SLKGAPIHLGTNSVHENWLKGSILTVASCILW 178
           G  K +    ++V   ++   +G  +P S  GAP+HL +  +   + K  IL +     W
Sbjct: 300 GNTKDVPLTLTMVHKAMLQLDEGNVLPNSTNGAPLHLRSEPLDIKFNKPFILLLFDKFTW 359

Query: 179 SSFYIMQVSNPS 190
           SS  + QV NP+
Sbjct: 360 SSLMMSQVVNPA 371


>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
 pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
          Length = 256

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 106 VVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF--YKGPAVPSLKGAPIH 154
           VV  L ++D+   RGI+     L SL+G  VI    +K   +P+L+ + +H
Sbjct: 113 VVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163


>pdb|1I9C|A Chain A, Glutamate Mutase From Clostridium Cochlearium: Complex
           With Adenosylcobalamin And Substrate
 pdb|1I9C|C Chain C, Glutamate Mutase From Clostridium Cochlearium: Complex
           With Adenosylcobalamin And Substrate
          Length = 137

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 153 IHLGTNSVHENWLKGSILTVASCILWSSFY 182
           +++G  S  EN++K +I T A  IL SS Y
Sbjct: 35  VNIGVLSPQENFIKAAIETKADAILVSSLY 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,124,981
Number of Sequences: 62578
Number of extensions: 173667
Number of successful extensions: 434
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 4
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)