Query 028586
Match_columns 207
No_of_seqs 173 out of 1270
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3E-28 6.5E-33 210.7 18.9 195 1-196 18-219 (358)
2 PRK11272 putative DMT superfam 99.9 1.6E-21 3.4E-26 164.6 18.5 163 2-193 14-177 (292)
3 PRK11689 aromatic amino acid e 99.9 4.1E-21 8.9E-26 162.3 15.4 171 2-194 10-184 (295)
4 PRK11453 O-acetylserine/cystei 99.9 6.8E-21 1.5E-25 161.2 16.6 161 2-194 10-171 (299)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 8.9E-21 1.9E-25 156.6 16.0 156 8-194 1-156 (260)
6 TIGR00688 rarD rarD protein. T 99.9 1.9E-20 4.1E-25 155.0 16.1 159 1-191 7-171 (256)
7 PRK15430 putative chlorampheni 99.8 3.1E-19 6.8E-24 150.9 14.4 157 2-190 14-173 (296)
8 TIGR00817 tpt Tpt phosphate/ph 99.8 2.1E-18 4.5E-23 146.1 17.2 162 10-198 16-179 (302)
9 PRK10532 threonine and homoser 99.8 1.3E-17 2.8E-22 140.9 15.7 162 1-196 17-178 (293)
10 TIGR03340 phn_DUF6 phosphonate 99.8 2.1E-17 4.5E-22 138.7 13.9 165 2-194 7-172 (281)
11 PTZ00343 triose or hexose phos 99.7 4.2E-16 9.2E-21 134.8 17.1 156 10-193 63-221 (350)
12 PF00892 EamA: EamA-like trans 99.7 1E-16 2.3E-21 117.3 9.1 125 6-138 1-125 (126)
13 COG0697 RhaT Permeases of the 99.6 3.7E-14 7.9E-19 117.8 15.9 167 2-194 13-181 (292)
14 PF06027 DUF914: Eukaryotic pr 99.6 7.2E-14 1.6E-18 119.6 16.2 173 6-195 23-197 (334)
15 COG2510 Predicted membrane pro 99.5 2.7E-13 5.9E-18 99.1 8.5 129 2-138 9-138 (140)
16 TIGR00950 2A78 Carboxylate/Ami 99.4 4.3E-12 9.2E-17 104.7 12.7 124 2-134 134-259 (260)
17 PF13536 EmrE: Multidrug resis 99.4 2.8E-12 6E-17 93.6 7.9 103 30-139 2-106 (113)
18 TIGR00776 RhaT RhaT L-rhamnose 99.3 3.1E-11 6.7E-16 102.0 14.4 171 2-194 7-178 (290)
19 PRK10532 threonine and homoser 99.3 1.5E-10 3.3E-15 97.8 14.9 129 2-140 154-282 (293)
20 PRK11272 putative DMT superfam 99.3 1.3E-10 2.9E-15 98.0 14.0 130 2-139 156-285 (292)
21 PLN00411 nodulin MtN21 family 99.1 9.7E-10 2.1E-14 95.5 13.9 131 2-141 195-330 (358)
22 PRK11689 aromatic amino acid e 99.1 1.1E-09 2.4E-14 92.6 12.7 125 2-138 162-286 (295)
23 KOG2765 Predicted membrane pro 99.1 4.4E-10 9.5E-15 95.9 8.7 112 64-193 163-274 (416)
24 PRK11453 O-acetylserine/cystei 99.1 5.1E-09 1.1E-13 88.7 14.1 131 2-138 149-286 (299)
25 COG2962 RarD Predicted permeas 99.0 1.2E-08 2.5E-13 84.8 15.1 155 2-188 13-170 (293)
26 TIGR00817 tpt Tpt phosphate/ph 99.0 1.9E-09 4.2E-14 91.2 10.5 132 2-139 151-293 (302)
27 TIGR03340 phn_DUF6 phosphonate 99.0 2.2E-09 4.7E-14 90.1 8.2 127 2-136 150-280 (281)
28 COG5006 rhtA Threonine/homoser 98.9 4.5E-08 9.7E-13 79.8 13.9 146 14-193 30-175 (292)
29 PF08449 UAA: UAA transporter 98.9 6E-08 1.3E-12 82.4 13.8 154 24-196 31-184 (303)
30 KOG4510 Permease of the drug/m 98.8 8.2E-10 1.8E-14 90.6 1.2 181 6-202 47-227 (346)
31 PTZ00343 triose or hexose phos 98.7 3.9E-07 8.4E-12 79.0 14.6 131 2-138 200-347 (350)
32 PRK15430 putative chlorampheni 98.7 1.9E-07 4.1E-12 79.0 12.1 129 2-138 155-284 (296)
33 PF03151 TPT: Triose-phosphate 98.7 4.3E-07 9.3E-12 69.0 12.5 128 2-136 6-150 (153)
34 COG0697 RhaT Permeases of the 98.7 6.9E-07 1.5E-11 74.0 13.7 126 2-138 160-286 (292)
35 PF04142 Nuc_sug_transp: Nucle 98.6 1.3E-06 2.8E-11 72.2 12.7 127 56-193 13-141 (244)
36 TIGR00776 RhaT RhaT L-rhamnose 98.6 8.2E-07 1.8E-11 75.1 11.8 126 2-138 158-287 (290)
37 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.5E-06 3.3E-11 63.2 10.0 69 64-138 40-108 (111)
38 COG5006 rhtA Threonine/homoser 98.3 6.6E-06 1.4E-10 67.3 10.5 124 3-135 155-278 (292)
39 KOG2234 Predicted UDP-galactos 98.3 9.8E-05 2.1E-09 63.2 16.8 177 2-193 21-210 (345)
40 PRK02971 4-amino-4-deoxy-L-ara 98.1 1.5E-05 3.2E-10 59.5 7.0 70 63-138 50-121 (129)
41 KOG1441 Glucose-6-phosphate/ph 98.0 3.8E-05 8.2E-10 65.5 8.6 151 14-190 35-187 (316)
42 KOG4314 Predicted carbohydrate 97.9 1.6E-05 3.5E-10 63.0 4.9 98 72-192 64-161 (290)
43 TIGR00688 rarD rarD protein. T 97.8 0.00052 1.1E-08 56.6 12.3 99 2-108 152-255 (256)
44 PF06027 DUF914: Eukaryotic pr 97.8 0.0003 6.4E-09 60.7 10.8 131 1-139 173-305 (334)
45 KOG3912 Predicted integral mem 97.7 0.00089 1.9E-08 55.9 12.1 169 9-196 16-206 (372)
46 PF06800 Sugar_transport: Suga 97.7 0.0014 3.1E-08 54.7 12.8 117 57-187 42-159 (269)
47 KOG2766 Predicted membrane pro 97.6 1.6E-06 3.4E-11 71.1 -5.0 147 25-194 48-194 (336)
48 KOG1443 Predicted integral mem 97.3 0.00044 9.6E-09 58.2 5.8 114 54-193 77-191 (349)
49 PF08449 UAA: UAA transporter 97.2 0.0088 1.9E-07 50.7 12.9 130 2-138 160-296 (303)
50 PF10639 UPF0546: Uncharacteri 97.2 0.0015 3.3E-08 47.4 6.6 110 1-136 1-111 (113)
51 PRK09541 emrE multidrug efflux 97.2 0.0022 4.8E-08 46.5 7.4 68 66-139 35-103 (110)
52 PRK10650 multidrug efflux syst 97.2 0.012 2.5E-07 42.6 10.9 65 68-138 42-107 (109)
53 PRK13499 rhamnose-proton sympo 97.2 0.0095 2.1E-07 51.6 12.2 167 2-182 13-190 (345)
54 PRK10452 multidrug efflux syst 97.1 0.0024 5.1E-08 47.0 7.0 69 65-139 34-103 (120)
55 COG2076 EmrE Membrane transpor 97.0 0.0033 7.1E-08 45.1 6.5 68 65-138 34-102 (106)
56 COG2962 RarD Predicted permeas 97.0 0.033 7.1E-07 46.8 13.3 126 3-138 155-282 (293)
57 PRK11431 multidrug efflux syst 96.9 0.0058 1.3E-07 43.9 7.1 65 68-138 36-101 (105)
58 PF04657 DUF606: Protein of un 96.8 0.018 3.8E-07 43.5 9.4 123 8-136 8-138 (138)
59 KOG1441 Glucose-6-phosphate/ph 96.6 0.0063 1.4E-07 52.1 6.8 127 4-138 171-306 (316)
60 PF06800 Sugar_transport: Suga 96.6 0.016 3.4E-07 48.5 8.8 125 2-136 144-268 (269)
61 KOG1444 Nucleotide-sugar trans 96.4 0.19 4.1E-06 42.8 14.1 155 11-192 27-183 (314)
62 PF00893 Multi_Drug_Res: Small 96.3 0.014 3E-07 40.9 5.6 58 66-129 34-92 (93)
63 PF05653 Mg_trans_NIPA: Magnes 96.1 0.0078 1.7E-07 51.2 4.5 68 66-139 55-122 (300)
64 KOG4510 Permease of the drug/m 95.8 0.0057 1.2E-07 50.9 2.0 120 10-138 205-324 (346)
65 KOG1580 UDP-galactose transpor 95.3 0.066 1.4E-06 44.0 6.6 106 70-193 94-199 (337)
66 KOG2765 Predicted membrane pro 94.7 0.2 4.4E-06 43.7 8.3 131 2-139 253-390 (416)
67 KOG1580 UDP-galactose transpor 94.6 0.062 1.3E-06 44.1 4.8 73 58-137 239-311 (337)
68 PRK13499 rhamnose-proton sympo 94.5 2.4 5.2E-05 36.9 14.4 134 3-138 181-340 (345)
69 KOG1442 GDP-fucose transporter 94.2 0.073 1.6E-06 44.6 4.3 142 25-189 61-208 (347)
70 KOG2922 Uncharacterized conser 92.3 0.059 1.3E-06 45.9 1.1 68 66-139 69-136 (335)
71 COG4975 GlcU Putative glucose 91.9 0.013 2.7E-07 48.3 -3.3 164 4-188 10-174 (288)
72 TIGR00803 nst UDP-galactose tr 91.8 0.45 9.8E-06 38.3 5.7 58 72-135 163-220 (222)
73 KOG1583 UDP-N-acetylglucosamin 91.3 0.5 1.1E-05 39.7 5.4 134 53-197 60-195 (330)
74 KOG1581 UDP-galactose transpor 91.1 5.6 0.00012 34.0 11.4 148 24-193 50-199 (327)
75 COG3238 Uncharacterized protei 90.8 5.1 0.00011 30.6 10.1 110 24-137 33-144 (150)
76 COG4975 GlcU Putative glucose 90.7 0.3 6.4E-06 40.4 3.5 80 55-138 205-284 (288)
77 KOG1581 UDP-galactose transpor 90.4 1.2 2.7E-05 37.8 7.0 109 22-138 199-312 (327)
78 PF06379 RhaT: L-rhamnose-prot 86.4 17 0.00037 31.6 11.4 169 3-184 14-191 (344)
79 KOG4831 Unnamed protein [Funct 80.9 3.4 7.4E-05 29.7 4.2 113 1-137 8-123 (125)
80 KOG1444 Nucleotide-sugar trans 77.9 21 0.00045 30.7 8.7 123 9-138 170-299 (314)
81 KOG1443 Predicted integral mem 77.7 40 0.00086 29.1 10.2 127 4-137 172-313 (349)
82 COG5070 VRG4 Nucleotide-sugar 72.9 52 0.0011 27.2 9.6 107 23-136 183-293 (309)
83 KOG3912 Predicted integral mem 72.6 42 0.00092 28.6 9.1 130 2-137 182-332 (372)
84 KOG1582 UDP-galactose transpor 68.4 25 0.00055 29.8 6.9 108 23-137 218-330 (367)
85 TIGR00803 nst UDP-galactose tr 66.0 21 0.00046 28.4 6.1 97 90-193 7-112 (222)
86 PRK02237 hypothetical protein; 65.2 49 0.0011 23.8 7.7 37 96-138 68-104 (109)
87 PF04142 Nuc_sug_transp: Nucle 55.0 1.2E+02 0.0026 24.9 10.2 109 2-115 120-235 (244)
88 COG3086 RseC Positive regulato 53.5 21 0.00046 27.1 3.7 49 81-138 68-121 (150)
89 PRK15462 dipeptide/tripeptide 52.6 1.9E+02 0.004 26.5 10.7 47 90-136 310-359 (493)
90 PF04342 DUF486: Protein of un 51.3 89 0.0019 22.4 7.1 29 102-136 77-105 (108)
91 PF02694 UPF0060: Uncharacteri 50.5 17 0.00036 26.1 2.5 37 96-138 66-102 (107)
92 PF07123 PsbW: Photosystem II 49.9 30 0.00066 25.9 3.9 30 164-193 104-133 (138)
93 PF09656 PGPGW: Putative trans 44.6 52 0.0011 20.5 3.8 45 123-191 5-49 (53)
94 COG5070 VRG4 Nucleotide-sugar 44.5 37 0.0008 28.0 4.0 94 79-190 86-179 (309)
95 CHL00196 psbY photosystem II p 43.5 34 0.00073 19.5 2.6 20 166-185 6-25 (36)
96 PF05653 Mg_trans_NIPA: Magnes 43.2 35 0.00076 29.0 3.9 76 63-138 214-291 (300)
97 PF06298 PsbY: Photosystem II 39.2 50 0.0011 18.9 2.8 21 166-186 6-26 (36)
98 PRK11056 hypothetical protein; 35.7 1.7E+02 0.0037 21.4 5.9 72 55-136 7-78 (120)
99 PLN00082 photosystem II reacti 35.6 42 0.00091 21.7 2.4 26 165-190 33-58 (67)
100 PF07226 DUF1422: Protein of u 34.9 1.8E+02 0.0039 21.2 5.9 72 55-136 7-78 (117)
101 COG4657 RnfA Predicted NADH:ub 33.6 1.1E+02 0.0024 23.9 4.8 43 129-190 114-156 (193)
102 PLN00077 photosystem II reacti 33.1 61 0.0013 23.7 3.2 29 164-192 93-121 (128)
103 PRK13240 pbsY photosystem II p 32.6 61 0.0013 19.0 2.6 18 167-184 7-24 (40)
104 KOG1583 UDP-N-acetylglucosamin 30.9 36 0.00077 29.0 2.0 65 68-138 245-313 (330)
105 COG2246 Predicted membrane pro 29.4 2.4E+02 0.0052 21.0 7.3 59 56-118 9-69 (139)
106 PRK10862 SoxR reducing system 28.6 69 0.0015 24.4 3.1 27 82-108 69-95 (154)
107 PF10754 DUF2569: Protein of u 28.5 2.2E+02 0.0048 21.3 5.9 28 165-192 120-147 (149)
108 PLN00092 photosystem I reactio 25.8 72 0.0016 23.6 2.6 30 164-193 103-132 (137)
109 PF11460 DUF3007: Protein of u 25.3 1.5E+02 0.0033 21.1 4.1 41 68-108 15-55 (104)
110 PF07857 DUF1632: CEO family ( 24.8 4.1E+02 0.0088 22.1 7.9 180 2-192 6-209 (254)
111 PF02487 CLN3: CLN3 protein; 24.5 4.9E+02 0.011 23.3 8.1 74 62-139 4-108 (402)
112 PF04246 RseC_MucC: Positive r 23.2 90 0.0019 22.9 2.8 25 84-108 64-88 (135)
113 COG1742 Uncharacterized conser 22.7 55 0.0012 23.4 1.5 35 98-138 69-103 (109)
114 PF07168 Ureide_permease: Urei 21.7 3.4E+02 0.0073 23.5 6.1 21 1-21 1-21 (336)
115 PF06570 DUF1129: Protein of u 21.0 4.2E+02 0.0092 20.9 9.1 22 167-188 180-201 (206)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=3e-28 Score=210.67 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=157.5
Q ss_pred ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKI-RPKLTLAVFLEIFLLSLLGVSLALNLYF 79 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~g~~~~~~~~~ 79 (207)
|+.+|+++++..++.|.+++.|++|+.+.++|+.+|++++.|+++.++|++ +++.+++++..+.++|++| +.++.+++
T Consensus 18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~~~ 96 (358)
T PLN00411 18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMYVITGY 96 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 789999999999999999999999999999999999999999987654422 2344678889999999999 67888999
Q ss_pred HHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCC-----CCcc
Q 028586 80 ASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKG-----APIH 154 (207)
Q Consensus 80 ~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~-----~~~~ 154 (207)
.|++|++|++|+++.++.|+++++++++++.|+.+.+++.+++|++|++++++|+.++...+++.....++ .+.+
T Consensus 97 ~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~ 176 (358)
T PLN00411 97 IGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQL 176 (358)
T ss_pred HHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccc
Confidence 99999999999999999999999999999777777777778889999999999999877544432100000 0000
Q ss_pred C-CCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCce
Q 028586 155 L-GTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFF 196 (207)
Q Consensus 155 ~-~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~ 196 (207)
+ .......++..|+++.++|+++||.|++++|+..++||+..
T Consensus 177 ~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~ 219 (358)
T PLN00411 177 SPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAF 219 (358)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHh
Confidence 0 00111234567999999999999999999999999998753
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=1.6e-21 Score=164.59 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=136.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+++.++||++++++|...+ ++||..++++|+.++++++.++... +|++ ..++|++.+....|.++...++.+++.+
T Consensus 14 ~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~-~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 89 (292)
T PRK11272 14 FALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLL-RGHP--LPTLRQWLNAALIGLLLLAVGNGMVTVA 89 (292)
T ss_pred HHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH-hCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999887 6999999999999999999887643 2222 2357888888999998878888999999
Q ss_pred h-hccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028586 82 M-KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 160 (207)
Q Consensus 82 l-~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~ 160 (207)
. ++++++.++++.++.|+++.+++.+ +|||++++ +++|++++++|+.++.. ++ . .
T Consensus 90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~-~---------------~ 145 (292)
T PRK11272 90 EHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GG-N---------------L 145 (292)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Cc-c---------------c
Confidence 9 9999999999999999999999986 69999765 59999999999988752 11 0 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
+....|+++.++++++||.|++..||..++++
T Consensus 146 -~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~ 177 (292)
T PRK11272 146 -SGNPWGAILILIASASWAFGSVWSSRLPLPVG 177 (292)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 11247999999999999999999999876554
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.87 E-value=4.1e-21 Score=162.33 Aligned_cols=171 Identities=13% Similarity=0.060 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+++.++||++++..|.+++ ++||+.+.++|+.+|++++.++. +++ +.++ +.++..+.+.++...++.+++.+
T Consensus 10 l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 10 LIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFP---RLRQ-FPKRYLLAGGLLFVSYEICLALS 81 (295)
T ss_pred HHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---ccc---cccc-ccHHHHHHHhHHHHHHHHHHHHH
Confidence 5688999999999999887 59999999999999999988752 111 1111 12234455666777888888888
Q ss_pred hhc----cChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCC
Q 028586 82 MKY----VHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGT 157 (207)
Q Consensus 82 l~~----t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~ 157 (207)
+++ +++++++++.++.|+++.+++++++|||++++ +++|++++++|++++.. +++..+ .++ .
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~--~~~-----~ 147 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLS--LAE-----L 147 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccch--hhh-----h
Confidence 764 57788999999999999999999999999764 69999999999988752 111000 000 0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028586 158 NSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFR 194 (207)
Q Consensus 158 ~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~ 194 (207)
..+..+...|+++.++|++|||.|+++.||..+++++
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~ 184 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG 184 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 0011122469999999999999999999999887764
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.87 E-value=6.8e-21 Score=161.25 Aligned_cols=161 Identities=16% Similarity=0.216 Sum_probs=127.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+.++++||.+++++|.+++ ++||..+.++|+.++++.+.++. + ++ +.++ +.....|+++...++.+++.+
T Consensus 10 l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~---~~~~~~g~~~~~~~~~~~~~~ 79 (299)
T PRK11453 10 LLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPL---NLLLGYGLTISFGQFAFLFCA 79 (299)
T ss_pred HHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCch---HHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999987 59999999999999887776643 1 11 1222 234556776666777788899
Q ss_pred hhc-cChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028586 82 MKY-VHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 160 (207)
Q Consensus 82 l~~-t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~ 160 (207)
++| .++++++++.++.|+++.+++++++|||++.+ +++|++++++|+.++.. ++. +.
T Consensus 80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~---------------~~ 137 (299)
T PRK11453 80 INFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL---------------NG 137 (299)
T ss_pred HHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC---------------CC
Confidence 998 58899999999999999999999999999765 59999999999988752 110 01
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028586 161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFR 194 (207)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~ 194 (207)
.+....||++.++++++|+.|++++||..++++.
T Consensus 138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~ 171 (299)
T PRK11453 138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR 171 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 1112469999999999999999999998877654
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.86 E-value=8.9e-21 Score=156.60 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 028586 8 VASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHP 87 (207)
Q Consensus 8 wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a 87 (207)
||.+++..|..++++.||....+.|++.+.+++.++... + .+++++.+....|.++..+++.+++.|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998888876432 2 245677788999999999999999999999999
Q ss_pred hhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHH
Q 028586 88 TFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKG 167 (207)
Q Consensus 88 ~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G 167 (207)
++++++.++.|+++.+++.+++|||++++ +++|+.++++|+.++.. +++ .+....|
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~-----------------~~~~~~G 129 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN-----------------LSINPAG 129 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc-----------------ccccHHH
Confidence 99999999999999999999999999765 69999999999988752 211 1123579
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028586 168 SILTVASCILWSSFYIMQVSNPSTSFR 194 (207)
Q Consensus 168 ~ll~l~aa~~~a~y~v~~k~~~~~~~~ 194 (207)
+++.++++++|+.|.++.|+..+++++
T Consensus 130 ~~~~l~a~~~~a~~~~~~k~~~~~~~~ 156 (260)
T TIGR00950 130 LLLGLGSGISFALGTVLYKRLVKKEGP 156 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence 999999999999999999999988763
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=1.9e-20 Score=154.98 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=124.0
Q ss_pred ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc----C-CCCCHHH-HHHHHHHHHHHHHHH
Q 028586 1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKI----R-PKLTLAV-FLEIFLLSLLGVSLA 74 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~----~-~~~~~~~-~~~~~~~gl~g~~~~ 74 (207)
++++.++||.+.+++|. ++ ++||.+++++|++++++++.++...+++++ + ++.++++ +......|++ ...+
T Consensus 7 ~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ 83 (256)
T TIGR00688 7 SLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-IGFN 83 (256)
T ss_pred HHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-HHHH
Confidence 46788999999999998 45 599999999999999988877654332211 1 1122232 3345555655 5688
Q ss_pred HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCcc
Q 028586 75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIH 154 (207)
Q Consensus 75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 154 (207)
+.+++.+++++++++|+++.++.|+++++++++++|||++++ +++|++++++|+.++...++
T Consensus 84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~------------ 145 (256)
T TIGR00688 84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG------------ 145 (256)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC------------
Confidence 999999999999999999999999999999999999999765 69999999999988752111
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 028586 155 LGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPST 191 (207)
Q Consensus 155 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~ 191 (207)
+. .++.+++++||+.|.+..|+..++
T Consensus 146 -------~~----~~~~l~aa~~~a~~~i~~~~~~~~ 171 (256)
T TIGR00688 146 -------SL----PWEALVLAFSFTAYGLIRKALKNT 171 (256)
T ss_pred -------Cc----hHHHHHHHHHHHHHHHHHhhcCCC
Confidence 11 135688999999999999998654
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.82 E-value=3.1e-19 Score=150.92 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIR---PKLTLAVFLEIFLLSLLGVSLALNLY 78 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~g~~~~~~~~ 78 (207)
+++.++||.++++.|.. . ++||.++.++|++++.+++.++...+++++. ...+++++. ....+.++...++.++
T Consensus 14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (296)
T PRK15430 14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVLIGGNWLLF 90 (296)
T ss_pred HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHHH
Confidence 57889999999999975 4 5999999999999999888777544321110 011344443 3447777788999999
Q ss_pred HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCC
Q 028586 79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN 158 (207)
Q Consensus 79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~ 158 (207)
++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++....+
T Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~---------------- 148 (296)
T PRK15430 91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG---------------- 148 (296)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC----------------
Confidence 99999999999999999999999999999999999765 69999999999988752111
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028586 159 SVHENWLKGSILTVASCILWSSFYIMQVSNPS 190 (207)
Q Consensus 159 ~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~ 190 (207)
+. +++.++++++||.|++..|+..+
T Consensus 149 ---~~----~~~~l~aa~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 149 ---SL----PIIALGLAFSFAFYGLVRKKIAV 173 (296)
T ss_pred ---Cc----cHHHHHHHHHHHHHHHHHHhcCC
Confidence 01 24578899999999999999754
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.81 E-value=2.1e-18 Score=146.10 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028586 10 SVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTF 89 (207)
Q Consensus 10 ~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~ 89 (207)
+..+.-|.++++--+|..+++.|+.++.+.+.+. +....+++++.+++|+++++.+|+++ +.++.+.+.+++|+++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~ 93 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSF 93 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHH
Confidence 4446779888754679999999999987776554 21112223456789999999999996 778899999999999999
Q ss_pred HHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHH
Q 028586 90 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSI 169 (207)
Q Consensus 90 a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~l 169 (207)
++++.++.|+++.+++++++|||++++ +++|++++++|+.+.. .+ +.+.+ ..|++
T Consensus 94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~----------------~~~~~-~~G~~ 148 (302)
T TIGR00817 94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DT----------------ELSFN-WAGFL 148 (302)
T ss_pred HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CC----------------ccccc-HHHHH
Confidence 999999999999999999999999754 6999999999997643 11 01112 46999
Q ss_pred HHHHHHHHHHHHHHHhhhccC--CcCCceee
Q 028586 170 LTVASCILWSSFYIMQVSNPS--TSFRFFSF 198 (207)
Q Consensus 170 l~l~aa~~~a~y~v~~k~~~~--~~~~~~~~ 198 (207)
+.++|+++|+.|+++.||..+ ++++...+
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~ 179 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIKSLDKTNLY 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccHH
Confidence 999999999999999999988 66654433
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.77 E-value=1.3e-17 Score=140.85 Aligned_cols=162 Identities=13% Similarity=0.144 Sum_probs=127.2
Q ss_pred ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
|+++.++|+++.+++|.+.++ +||..+.++|+++|++++.++.. +++. +.++|+++.....|++. ...+.+++.
T Consensus 17 ~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~ 90 (293)
T PRK10532 17 LLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSL-GGMNYLFYL 90 (293)
T ss_pred HHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 467899999999999999875 99999999999999999887642 2221 34678888888888874 566788999
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 160 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~ 160 (207)
+++|++++.++++.++.|+++.+++. |+.. +..++.++++|+.++.. .+.+ .
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~~---------------~ 142 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQD---------------V 142 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCCC---------------c
Confidence 99999999999999999999987763 4321 35677889999987652 2211 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCce
Q 028586 161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFF 196 (207)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~ 196 (207)
+.....|+++.++++++||.|++..|+..+++++..
T Consensus 143 ~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~ 178 (293)
T PRK10532 143 SHVDLTGAALALGAGACWAIYILSGQRAGAEHGPAT 178 (293)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence 111247999999999999999999999988887533
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.75 E-value=2.1e-17 Score=138.74 Aligned_cols=165 Identities=12% Similarity=0.127 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLE-RKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
+.++++|+...+..|...++ -++ ..+++...+++++.|+...+. ++.++.. +++++.....+.++...++.+++.
T Consensus 7 ~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 7 VFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRL-PATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999976554 344 357888888888888765431 2222222 344455566666677899999999
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 160 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~ 160 (207)
|++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|+.++.. ++. .
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~----------------~ 139 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF----------------A 139 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc----------------c
Confidence 999999999999999999999999999999999764 59999999999988752 111 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028586 161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFR 194 (207)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~ 194 (207)
..+ ..|+.+.++++++|+.|++..|+..++.++
T Consensus 140 ~~~-~~g~~~~l~aal~~a~~~i~~k~~~~~~~~ 172 (281)
T TIGR03340 140 QHR-RKAYAWALAAALGTAIYSLSDKAAALGVPA 172 (281)
T ss_pred ccc-hhHHHHHHHHHHHHHHhhhhccccccchhc
Confidence 111 358889999999999999999887666654
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.71 E-value=4.2e-16 Score=134.83 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028586 10 SVYFLTEDSFNQGLN-PHIYVTYRHAAGSLMMFPFAYFLERKIRPKL--TLAVFLEIFLLSLLGVSLALNLYFASMKYVH 86 (207)
Q Consensus 10 ~~~i~~K~~l~~~~~-p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~ 86 (207)
...+..|.++++ +| |+.++.+|++++.+++..+... ..++.++. .+++++.++.+|+++...+. ..+.++++++
T Consensus 63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~~~~~-~~~~sl~~~s 139 (350)
T PTZ00343 63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHLFVHF-GAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 445678888875 99 9999999999998776544221 12222233 35688899999999977644 4679999999
Q ss_pred hhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHH
Q 028586 87 PTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLK 166 (207)
Q Consensus 87 a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 166 (207)
++.+.++.++.|+++++++++++|||++++ +++|+++++.|+.+.+. + + .+.+ ..
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~---------------~~~~-~~ 194 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E---------------LHFT-WL 194 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c---------------chhH-HH
Confidence 999999999999999999999999999764 69999999999998652 1 0 1122 46
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 167 GSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 167 G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
|+++.++|+++|+.|+++.|+..++++
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999988764
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.69 E-value=1e-16 Score=117.32 Aligned_cols=125 Identities=23% Similarity=0.409 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028586 6 ICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYV 85 (207)
Q Consensus 6 ~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t 85 (207)
++||.+.+..|...++ .||....++|+..+++ +.++....+++...+.+++++......|.++...++.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4799999999998875 9999999999999998 6666555444433456788888999999998899999999999999
Q ss_pred ChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 86 HPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 86 ~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
++++++.+.++.|+++.+++++++||+++++ +++|+++++.|+++++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764 6999999999998764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.61 E-value=3.7e-14 Score=117.78 Aligned_cols=167 Identities=22% Similarity=0.342 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+...+.|+.+....|...++..++....+.|+..+..+..+.... ++.... ...+++++..+.+.++...++.+++.+
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (292)
T COG0697 13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLR-PALRPWLLLLLLALLGLALPFLLLFLA 90 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hccccc-ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999987643666777777999998885443221 111111 122235567888888889999999999
Q ss_pred hhccChhhHHHhhccchHHHHHHHH-HhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAV-VFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 160 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~-~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~ 160 (207)
+++++++.++.+.++.|+++.+++. ++++||++++ ++.|.++++.|+.++...++.
T Consensus 91 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~----------------- 147 (292)
T COG0697 91 LKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG----------------- 147 (292)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc-----------------
Confidence 9999999999999999999999997 6679999754 699999999999988632110
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028586 161 HEN-WLKGSILTVASCILWSSFYIMQVSNPSTSFR 194 (207)
Q Consensus 161 ~~~-~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~ 194 (207)
+.+ ...|+++.++++++|+.|.+..|+.. +++.
T Consensus 148 ~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~ 181 (292)
T COG0697 148 GGILSLLGLLLALAAALLWALYTALVKRLS-RLGP 181 (292)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence 011 35899999999999999999999988 5543
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.59 E-value=7.2e-14 Score=119.57 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028586 6 ICVASVYFLTEDSFNQGLN-PHIYVTYRHAAGSLMMFPFAYFLERK-IRPKLTLAVFLEIFLLSLLGVSLALNLYFASMK 83 (207)
Q Consensus 6 ~~wg~~~i~~K~~l~~~~~-p~~l~~~R~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~ 83 (207)
++=.++....+...+++.+ |..-.++-+..-.++..+...+++++ +..+..+++|++++++|++-. ..+.+...|.+
T Consensus 23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~aN~~~v~a~~ 101 (334)
T PF06027_consen 23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EANYLVVLAYQ 101 (334)
T ss_pred HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 3444555555554444555 55555555555445555554443222 112223567888899999864 67889999999
Q ss_pred ccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcc
Q 028586 84 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN 163 (207)
Q Consensus 84 ~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~ 163 (207)
||+.+.+.++....-.++++++++++|||.++. +++|+++|++|+.++...+....+ .+.++++
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~----------~~~~~~~ 165 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS----------DSSSGSN 165 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc----------cCCCCCc
Confidence 999999999999998999999999999999764 699999999999887643321100 0123445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCcCCc
Q 028586 164 WLKGSILTVASCILWSSFYIMQVSNPSTSFRF 195 (207)
Q Consensus 164 ~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~ 195 (207)
..+||++++.+++.||+|++++++..|++|..
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~ 197 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRV 197 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 67999999999999999999999999998753
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.47 E-value=2.7e-13 Score=99.13 Aligned_cols=129 Identities=15% Similarity=0.271 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIR-PKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
++++++||...++.|+.++ ++||..-++.|......++..++....+.+. ...++|.|..+.+-|+-+ .+.-.+||.
T Consensus 9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl~Yf~ 86 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWLLYFR 86 (140)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHHHHHH
Confidence 4688999999999999996 6999999999999998888887765433222 235788888888888665 677889999
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+++.-.++...-+..+.|+++.++++++++||+|.+ +++|+.+..+|+++++
T Consensus 87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999998888999999999999999999999875 5999999999998764
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.40 E-value=4.3e-12 Score=104.71 Aligned_cols=124 Identities=19% Similarity=0.319 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLN--PHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYF 79 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~--p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~ 79 (207)
+.++++|+.+.+..|+..+ +.+ +.....+|+.++.+++.|+.+..++. ...+.+++..+...|+++....+.+++
T Consensus 134 l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (260)
T TIGR00950 134 LGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTALAYFLWN 210 (260)
T ss_pred HHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999875 356 44566678999999999887653322 234677888899999999999999999
Q ss_pred HHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhH
Q 028586 80 ASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGV 134 (207)
Q Consensus 80 ~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv 134 (207)
.++++.+++.++.+.++.|+++.++++++++|+++.+ ++.|..+.+.|+
T Consensus 211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 9999999999999999999999999999999999764 599999999886
No 17
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.36 E-value=2.8e-12 Score=93.60 Aligned_cols=103 Identities=25% Similarity=0.411 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHH
Q 028586 30 TYRHAAGSLMMFPFAYFLERKIR--PKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVV 107 (207)
Q Consensus 30 ~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~ 107 (207)
++|+..+.+++..+...++|.+. +..++|++.+....|+++...++.+++.|+++++ +.++.+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 68999999999888766432211 1234466777788899988889999999999999 58889999999999999999
Q ss_pred hhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 108 FRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 108 ~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
++|||++.+ ++.|++++++|++++..
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 999999765 69999999999999873
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.34 E-value=3.1e-11 Score=102.01 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
++++++||...+..|..- +.++.++. |..++.+++..+....+ +.+ ...++.+..-++.|++ ....|.+|+.+
T Consensus 7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~~~-~~~~~~~~~g~l~G~~-w~ig~~~~~~a 79 (290)
T TIGR00776 7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-LPE-FWALSIFLVGLLSGAF-WALGQINQFKS 79 (290)
T ss_pred HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-CCc-ccccHHHHHHHHHHHH-HHhhhhhHHHH
Confidence 467899999999999853 68887775 88888887766554432 211 1123333323333333 56778999999
Q ss_pred hhccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028586 82 MKYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV 160 (207)
Q Consensus 82 l~~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~ 160 (207)
+++++.+.|-.+.+ +.|++..+.+.+++||+.+.++ .....+|++++++|++++...++++.+ .++
T Consensus 80 i~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~~-----------~~~ 146 (290)
T TIGR00776 80 MRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSAG-----------IKS 146 (290)
T ss_pred HHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEeccccccc-----------ccc
Confidence 99999999988877 8889999999999999986542 112288999999999887532211100 000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028586 161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFR 194 (207)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~ 194 (207)
..+...|.++.+.|+++|+.|.+..|+. ++++
T Consensus 147 ~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~ 178 (290)
T TIGR00776 147 EFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDG 178 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCc
Confidence 0233579999999999999999999976 3554
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.28 E-value=1.5e-10 Score=97.79 Aligned_cols=129 Identities=11% Similarity=0.127 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+.++++|+.+.+..|+..+ +.+|...... ..++++++.|+...... ....+...+..++.+|+++..+.+.+|+.+
T Consensus 154 l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~ 229 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPYSLEMIA 229 (293)
T ss_pred HHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999754 5788777544 46667777777654221 122355666667899999999999999999
Q ss_pred hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhh
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFY 140 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~ 140 (207)
+++.+|+.++.+.++.|+++.++++++++|+++.. +++|..+.+.|++.....
T Consensus 230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999764 599999999999887643
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.27 E-value=1.3e-10 Score=98.04 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+.++++|+.+.+..|+.- . -++....+++..++++++.++....+.......+.++|..+.++|+++..+.+.+|+.+
T Consensus 156 l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~ 233 (292)
T PRK11272 156 LIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYL 233 (292)
T ss_pred HHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999853 2 34566778899999998888765432211112356788899999999999999999999
Q ss_pred hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
+++.++++++.+.++.|++++++++++++|+++.. +++|.++.+.|+++++.
T Consensus 234 ~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 234 LRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999764 69999999999988753
No 21
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.15 E-value=9.7e-10 Score=95.47 Aligned_cols=131 Identities=9% Similarity=0.179 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHHHhhccC----CCCCHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNP-HIYVTYRHAAGSLMMFPFAYFLERKIR----PKLTLAVFLEIFLLSLLGVSLALN 76 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p-~~l~~~R~~~a~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~gl~g~~~~~~ 76 (207)
+.++++|+.+.+..|..... .|| ...+++...++++.+.+.....++... ...+.. ...+++.|+. ..+.+.
T Consensus 195 l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~lay~ 271 (358)
T PLN00411 195 TIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TSVYYV 271 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HHHHHH
Confidence 46789999999999987664 555 466777777777777666554332211 112222 2235556654 567888
Q ss_pred HHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhc
Q 028586 77 LYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 141 (207)
Q Consensus 77 ~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~ 141 (207)
++++++++.+|+.++++.++.|++++++++++++|++++. +++|.++.+.|+++....+
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999875 5999999999998876433
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.12 E-value=1.1e-09 Score=92.55 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+.++++|+.+.+..|+.. ++.+|.... +..+++.+.+.... ........+.+.|..+.+.|+ ...+.+.+++.+
T Consensus 162 l~aa~~~A~~~v~~k~~~-~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~~a 235 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYA-RGKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAA-AMGFGYAAWNVG 235 (295)
T ss_pred HHHHHHHHHHHHHHhhcc-CCCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 578899999999999964 357887653 23344444443322 221112345677878777774 578889999999
Q ss_pred hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+++.+|++++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 236 l~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 236 ILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999765 5999999999998764
No 23
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.09 E-value=4.4e-10 Score=95.86 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCC
Q 028586 64 FLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGP 143 (207)
Q Consensus 64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~ 143 (207)
+....+ -++.+..++.++.+|+++..+++.++.-+|+..++.++..||+++ .|.+++++++.|+++++..+..
T Consensus 163 l~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~------sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 163 LFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTL------SKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhH------HHHHHHHHhhccEEEEEecccc
Confidence 334444 367899999999999999999999999999999999999999976 4799999999999988754322
Q ss_pred CCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 144 AVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
+. .+..+.+..+|+++.+++|+.||+|+++-||...++.
T Consensus 236 ~~-----------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg 274 (416)
T KOG2765|consen 236 QN-----------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG 274 (416)
T ss_pred cc-----------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 11 0122345678999999999999999999999888774
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.06 E-value=5.1e-09 Score=88.69 Aligned_cols=131 Identities=9% Similarity=0.148 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLN--PHIYVTYRHAAGSLMMFPFAYFLERKI-----RPKLTLAVFLEIFLLSLLGVSLA 74 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~--p~~l~~~R~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~gl~g~~~~ 74 (207)
+.++++|+.+.+..|...++.-+ ......+-.+.+.+.+.......+... ....+.++|..++++|++++.+.
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~ 228 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG 228 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999986543212 233344444444443333333222211 11346788999999999999999
Q ss_pred HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+.+++.++++.++++++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 229 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 229 YGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999765 5999999999998764
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.04 E-value=1.2e-08 Score=84.78 Aligned_cols=155 Identities=13% Similarity=0.148 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC-C--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIR-P--KLTLAVFLEIFLLSLLGVSLALNLY 78 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~gl~g~~~~~~~~ 78 (207)
+.+.++||..+...|.. + ++|+.++.+.|...+..++..+....++.+. . ..++|.+....+.+++ ...+-..|
T Consensus 13 l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~~nW~lf 89 (293)
T COG2962 13 LLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IGLNWWLF 89 (293)
T ss_pred HHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHh
Confidence 46789999999999974 4 5999999999999998888766554332211 1 1234555555556655 46788899
Q ss_pred HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCC
Q 028586 79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN 158 (207)
Q Consensus 79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~ 158 (207)
.+++++-.+-.+|+=.++.|++.++++.+++|||+++ .|+++++++.+||.......|+
T Consensus 90 iWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g~--------------- 148 (293)
T COG2962 90 IWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLGS--------------- 148 (293)
T ss_pred heecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcCC---------------
Confidence 9999999999999999999999999999999999964 5799999999999876533221
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 028586 159 SVHENWLKGSILTVASCILWSSFYIMQVSN 188 (207)
Q Consensus 159 ~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~ 188 (207)
-.| ..+.=+++|+.|-.+-|+.
T Consensus 149 ---lpw-----val~la~sf~~Ygl~RK~~ 170 (293)
T COG2962 149 ---LPW-----VALALALSFGLYGLLRKKL 170 (293)
T ss_pred ---CcH-----HHHHHHHHHHHHHHHHHhc
Confidence 222 2356688999999885544
No 26
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.03 E-value=1.9e-09 Score=91.22 Aligned_cols=132 Identities=11% Similarity=0.171 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHHHHHHHHHHHhhccCCC---------CCHHH-HHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQ-GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPK---------LTLAV-FLEIFLLSLLG 70 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~-~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~---------~~~~~-~~~~~~~gl~g 70 (207)
++++++|+.+.+..|+..++ +.||..+..+....+++.+.|+....+...... .+... +...+..+...
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGF 230 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence 56889999999999997651 589999999999999999999876533211000 00001 11122333323
Q ss_pred HHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 71 VSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 71 ~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
...++.+++.++++++|+.+++..++.|++++++++++++|+++.+ +++|.++.+.|+.+...
T Consensus 231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999999999999999999875 59999999999988764
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.97 E-value=2.2e-09 Score=90.09 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchH----HHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHI----YVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNL 77 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~----l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~ 77 (207)
+.++++|+.+.+..|...+ +.+|.. ...+.....++.+.+....++++ ....+...+......+.++..+.+.+
T Consensus 150 l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~l~~~l 227 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGLMIGGAYAL 227 (281)
T ss_pred HHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999997633 345432 22333333322222221111111 11112233445677777778889999
Q ss_pred HHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 78 YFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 78 ~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
++.++++.+++.++.+.++.|+++.++++++++|+++.. +++|..+.+.|+.+
T Consensus 228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999764 59999999999875
No 28
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.92 E-value=4.5e-08 Score=79.82 Aligned_cols=146 Identities=12% Similarity=0.172 Sum_probs=109.8
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHh
Q 028586 14 LTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAV 93 (207)
Q Consensus 14 ~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il 93 (207)
+.|.... .+.|.-.+++|..++++++.++ ++.++ .+.+++++..+...|..- ...|.+||.+++..+=+.+..+
T Consensus 30 ~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l--~RPwr--~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAVAi 103 (292)
T COG5006 30 FAKSLFP-LVGAAGVTALRLAIAALILLAL--FRPWR--RRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAVAI 103 (292)
T ss_pred HHHHHcc-ccChhhHHHHHHHHHHHHHHHH--hhHHH--hccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhh
Confidence 3455455 5899999999999999999876 33322 246788999999999864 4568889999999999999999
Q ss_pred hccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHH
Q 028586 94 VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVA 173 (207)
Q Consensus 94 ~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~ 173 (207)
+++-|+.+..++. |.. +..+-+.+++.|+.++.. .+++. ... ...|..+.+.
T Consensus 104 EF~GPL~vA~~~s---Rr~---------~d~vwvaLAvlGi~lL~p-~~~~~--------------~~l-Dp~Gv~~Al~ 155 (292)
T COG5006 104 EFTGPLAVALLSS---RRL---------RDFVWVALAVLGIWLLLP-LGQSV--------------WSL-DPVGVALALG 155 (292)
T ss_pred hhccHHHHHHHhc---cch---------hhHHHHHHHHHHHHhhee-ccCCc--------------CcC-CHHHHHHHHH
Confidence 9999998766532 222 245677888999988752 22111 112 2589999999
Q ss_pred HHHHHHHHHHHhhhccCCcC
Q 028586 174 SCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 174 aa~~~a~y~v~~k~~~~~~~ 193 (207)
+..||+.|.+..||.-+..|
T Consensus 156 AG~~Wa~YIv~G~r~g~~~~ 175 (292)
T COG5006 156 AGACWALYIVLGQRAGRAEH 175 (292)
T ss_pred HhHHHHHHHHHcchhcccCC
Confidence 99999999999999876444
No 29
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.87 E-value=6e-08 Score=82.36 Aligned_cols=154 Identities=20% Similarity=0.137 Sum_probs=115.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHH
Q 028586 24 NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFI 103 (207)
Q Consensus 24 ~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~i 103 (207)
.|..+++..+....+.-.+.....+ .++.+++.++..+..+++- .+...+-+.+++|.|...-.++-++.|+.+++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi 106 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFK---FPKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMI 106 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcc---ccCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence 3889999999998877766543322 1122344455667777664 56788899999999999999999999999999
Q ss_pred HHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 028586 104 IAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYI 183 (207)
Q Consensus 104 la~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v 183 (207)
++.+++|+|.+++ |+.++++..+|+.+....+..... .......++..|+++++.+.++-+.+.+
T Consensus 107 ~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~---------~~~~~~~~~~~G~~ll~~sl~~~a~~~~ 171 (303)
T PF08449_consen 107 LGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS---------SSNSSSFSSALGIILLLLSLLLDAFTGV 171 (303)
T ss_pred HHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc---------ccccccccchhHHHHHHHHHHHHHHHHH
Confidence 9999999998654 699999999999886543322111 0011122234599999999999999999
Q ss_pred HhhhccCCcCCce
Q 028586 184 MQVSNPSTSFRFF 196 (207)
Q Consensus 184 ~~k~~~~~~~~~~ 196 (207)
+|+|..++|+...
T Consensus 172 ~qe~~~~~~~~~~ 184 (303)
T PF08449_consen 172 YQEKLFKKYGKSP 184 (303)
T ss_pred HHHHHHHHhCCcH
Confidence 9999999887544
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.84 E-value=8.2e-10 Score=90.55 Aligned_cols=181 Identities=17% Similarity=0.259 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028586 6 ICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYV 85 (207)
Q Consensus 6 ~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t 85 (207)
..+..+.++.+..++ .+|....-.|+..-.++..|...+.+....-+...| +++++=|+.|.++ ..+.|++++|.
T Consensus 47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tg-vmlmyya~~~m 121 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTG-VMLMYYALMYM 121 (346)
T ss_pred HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhH-HHHHHHHHhhc
Confidence 455556666666553 699999999977766666665443221110111122 2345555666444 34566799999
Q ss_pred ChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchH
Q 028586 86 HPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWL 165 (207)
Q Consensus 86 ~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 165 (207)
+-+.|+++....|+++.++++.++|||.+ +.+.+|..+.+.|+++++. .+ +- +++..+.++ .++.+...
T Consensus 122 slaDA~vItFssPvft~ifaw~~LkE~~t------~~eaL~s~itl~GVVLIvR--Pp-Fl-FG~~t~g~~-~s~~~~~~ 190 (346)
T KOG4510|consen 122 SLADAVVITFSSPVFTIIFAWAFLKEPFT------KFEALGSLITLLGVVLIVR--PP-FL-FGDTTEGED-SSQVEYDI 190 (346)
T ss_pred chhheEEEEecChHHHHHHHHHHHcCCCc------HHHHHHHHHhhheEEEEec--CC-cc-cCCCccccc-cccccccC
Confidence 99999999999999999999999999986 4679999999999999862 11 11 111111011 11112234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcCCceeeeeee
Q 028586 166 KGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYT 202 (207)
Q Consensus 166 ~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~ 202 (207)
.|....+.+++.-|--.++-|+.-|+.+...+..++.
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~ 227 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFS 227 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHH
Confidence 6777788888877777777788778777766666554
No 31
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.74 E-value=3.9e-07 Score=79.02 Aligned_cols=131 Identities=13% Similarity=0.175 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHHHHHhC------CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC--------CCCH---HHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQ------GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP--------KLTL---AVFLEIF 64 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~------~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~--------~~~~---~~~~~~~ 64 (207)
++++++|+...+..|..+++ ++++..+..+-..+++++++|+....+..... ..+. .......
T Consensus 200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i 279 (350)
T PTZ00343 200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKI 279 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHH
Confidence 46789999999999998753 25677777777889999999987643321100 0011 1111122
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 65 LLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 65 ~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+.+.+...+++...+.++++++|..+++..++-|+++.++++++++|+++.. +++|.++.+.|+++-+
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence 2222333444444557999999999999999999999999999999999865 5999999999998754
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.73 E-value=1.9e-07 Score=79.03 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQG-LNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~-~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
+.++++|+.+.+..|....+. .++.....+-..++...+.++... ........+...+..+...|+ ...+.+.+++.
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~ 232 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 467899999999999863221 122333333344443333222100 000001112223334444555 45688999999
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
++++.+|+.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.++.
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999765 5899999988887665
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.71 E-value=4.3e-07 Score=68.97 Aligned_cols=128 Identities=21% Similarity=0.323 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHHHHHHhC------CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC----CC-------CHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQ------GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP----KL-------TLAVFLEIF 64 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~------~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~----~~-------~~~~~~~~~ 64 (207)
+.+.++.+...+..|..+++ +.+|..+..+-...+.+++.|.....++.+.. .. +.+.+..++
T Consensus 6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (153)
T PF03151_consen 6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLI 85 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHH
Confidence 46778889999999998865 69999999999999999999988775543211 00 223445555
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 65 LLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 65 ~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
..|+++ ...+...+..+++++|...++..+.-.+.+.+++.++++|+++.+ +++|+.+++.|.+.
T Consensus 86 ~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 86 LSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 666665 578899999999999999999999999999999999999999764 69999999999864
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.67 E-value=6.9e-07 Score=73.95 Aligned_cols=126 Identities=16% Similarity=0.262 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVT-YRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~-~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
+.+.++|+.+.+..|... ..++..... +....+.....+. ...... ...+.+++..+...|+++....+.+++.
T Consensus 160 l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (292)
T COG0697 160 LAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFSTGLAYLLWYY 234 (292)
T ss_pred HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999765 467777776 4444222222222 111111 2346788889999999998889999999
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+++..+++.++.+..+.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999765 5999999999998765
No 35
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.58 E-value=1.3e-06 Score=72.19 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028586 56 TLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM 135 (207)
Q Consensus 56 ~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ 135 (207)
++|+...+.+=+++ ....+.+.+.++++.+|+.=.++..+-.+++++++++++|+|++.+ +|.++.+.+.|+.
T Consensus 13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 46777777777777 5788999999999999999999999999999999999999999765 5999999999998
Q ss_pred HHhhhcCCCCCCCCCCCccCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 136 VIAFYKGPAVPSLKGAPIHLGT--NSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 136 ll~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
+....+....+ +++ .... .....+...|.++.++++++-++-.++.+|.+|+.+
T Consensus 86 lv~~~~~~~~~--~~~--~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 86 LVQLSSSQSSD--NSS--SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred eeecCCccccc--ccc--ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 86532211100 000 0000 011234568999999999999999999999999886
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.58 E-value=8.2e-07 Score=75.05 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHH---HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRH---AAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLY 78 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~ 78 (207)
+++.+.++.+.+..|.. +.||.+..+... .+++.++.+.. + + .++ .+.+......+.|++ ....+.+|
T Consensus 158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~-~~~~~~~~~~~~Gi~-~~ia~~~y 228 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKP-LKKYAILLNILPGLM-WGIGNFFY 228 (290)
T ss_pred HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-ccc-hHHHHHHHHHHHHHH-HHHHHHHH
Confidence 46788999999999964 379998854444 44444433321 1 1 122 223333444558888 68889999
Q ss_pred HHHhh-ccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 79 FASMK-YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 79 ~~gl~-~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+.+.+ +.+++.++++.+..|+...+.+.+++||+.+.++. +.-.+|.++.+.|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG 287 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence 99999 99999999999999999999999999999987651 112289999999998764
No 37
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.51 E-value=1.5e-06 Score=63.19 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 64 FLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
...++.+....+.++..++++.+.+.|-.+.++.|+++.+++++++|||++.+ |++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34445777888999999999999999999989999999999999999999865 5999999999998874
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.33 E-value=6.6e-06 Score=67.32 Aligned_cols=124 Identities=11% Similarity=0.132 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028586 3 LLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASM 82 (207)
Q Consensus 3 ~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl 82 (207)
.+..||+.+-+..|++-+ ..+--.-++.-+++|+++.+|+..... . ..-.+++.+..-+..|+++..+.+.+...++
T Consensus 155 ~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~a-g-~~l~~p~ll~laLgvavlSSalPYsLEmiAL 231 (292)
T COG5006 155 GAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQA-G-PALFSPSLLPLALGVAVLSSALPYSLEMIAL 231 (292)
T ss_pred HHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhc-c-hhhcChHHHHHHHHHHHHhcccchHHHHHHH
Confidence 577899999999999853 355567778899999999999976321 1 1123566666677888999999999999999
Q ss_pred hccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028586 83 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM 135 (207)
Q Consensus 83 ~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ 135 (207)
+..++..=++++++.|.+..+.++++++|+++.. ||.|+...+.+..
T Consensus 232 ~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa 278 (292)
T COG5006 232 RRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA 278 (292)
T ss_pred hhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999875 4788777766654
No 39
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.27 E-value=9.8e-05 Score=63.18 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=129.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHHHHHHHHHHhhc---c-CCCC------CHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQG---LNPHIYVTYRHAAGSLMMFPFAYFLERK---I-RPKL------TLAVFLEIFLLSL 68 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~---~~p~~l~~~R~~~a~~~l~~~~~~~~~~---~-~~~~------~~~~~~~~~~~gl 68 (207)
+...+.+++.....|++-..+ ..|.+.++.--.+-.++.....+...|+ + ...+ .+++.....+=++
T Consensus 21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~ 100 (345)
T KOG2234|consen 21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPAL 100 (345)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHH
Confidence 456677888899999887655 6678888888877777666665544322 1 1111 2345555555555
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCC
Q 028586 69 LGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSL 148 (207)
Q Consensus 69 ~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 148 (207)
+ .++.|.++|.++.+.+|+.-.+...+--..|++++.+++++|++++ +|.++++.++|+.++.....+..+
T Consensus 101 i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~~-- 171 (345)
T KOG2234|consen 101 I-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPTG-- 171 (345)
T ss_pred H-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCCC--
Confidence 5 4667779999999999999999999999999999999999999765 599999999999987521111110
Q ss_pred CCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 149 KGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
.+ ......+...|....+.++++-+.-.++.+|.+|+-.
T Consensus 172 -a~-----~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~ 210 (345)
T KOG2234|consen 172 -AK-----SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN 210 (345)
T ss_pred -cc-----CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 0122345678999999999999999999999998765
No 40
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.07 E-value=1.5e-05 Score=59.54 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHH--hhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 63 IFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVV--FRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 63 ~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~--~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
.+++|+.+..+.+.++..+++..+++.|.-+.+..|.++.+.++. +++|+++++ |++|+.+.++|++++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 577889999999999999999999999999999999888888875 899999865 6999999999999876
No 41
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.98 E-value=3.8e-05 Score=65.54 Aligned_cols=151 Identities=16% Similarity=0.139 Sum_probs=112.6
Q ss_pred HHHHHHh--CCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 028586 14 LTEDSFN--QGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMT 91 (207)
Q Consensus 14 ~~K~~l~--~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~ 91 (207)
..|..++ +.--|..++..++.++.+.+...-.....+..+..++..+..++-+|++- ++...+-+.++++.+.+..-
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q 113 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQ 113 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHH
Confidence 4577776 43458999999888887777654333222211111334566777778764 56677888999999999999
Q ss_pred HhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHH
Q 028586 92 AVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILT 171 (207)
Q Consensus 92 il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 171 (207)
.+=.+.|.++.++++++.+|+.+++ ..+.++....|+.+-+. + +...+ ..|.+..
T Consensus 114 ~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~----------------e~~fn-~~G~i~a 168 (316)
T KOG1441|consen 114 TIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--T----------------ELSFN-LFGFISA 168 (316)
T ss_pred HHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--c----------------ccccc-HHHHHHH
Confidence 9999999999999999999999765 36778888888876542 1 11123 4799999
Q ss_pred HHHHHHHHHHHHHhhhccC
Q 028586 172 VASCILWSSFYIMQVSNPS 190 (207)
Q Consensus 172 l~aa~~~a~y~v~~k~~~~ 190 (207)
+++.++.+..++++|++.+
T Consensus 169 ~~s~~~~al~~I~~~~ll~ 187 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLT 187 (316)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999985
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.92 E-value=1.6e-05 Score=62.99 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCC
Q 028586 72 SLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGA 151 (207)
Q Consensus 72 ~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 151 (207)
++.++.|..+++..+|+.++.+..+.-.|+.+++++.+++|+.. .|++..++++.|++.++..+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccc---------
Confidence 45688999999999999999999999999999999999999975 469999999999988763221
Q ss_pred CccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 028586 152 PIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTS 192 (207)
Q Consensus 152 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~ 192 (207)
...+...|..+.++|++.-|+|-++-|+....-
T Consensus 129 --------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 129 --------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNA 161 (290)
T ss_pred --------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 122335899999999999999999999987654
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.79 E-value=0.00052 Score=56.58 Aligned_cols=99 Identities=10% Similarity=0.196 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH---HhhccC-CC-CCHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYF---LERKIR-PK-LTLAVFLEIFLLSLLGVSLALN 76 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~---~~~~~~-~~-~~~~~~~~~~~~gl~g~~~~~~ 76 (207)
+.++++|+.+.+..|...++ ++..... +...+.|.... ...... .. .+.++|..++.+|+. +.+.+.
T Consensus 152 l~aa~~~a~~~i~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~ 223 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKNT--DLAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLL 223 (256)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHH
Confidence 46789999999999986432 3322222 12222222211 111111 11 123588889999987 678999
Q ss_pred HHHHHhhccChhhHHHhhccchHHHHHHHHHh
Q 028586 77 LYFASMKYVHPTFMTAVVNTIPCMTFIIAVVF 108 (207)
Q Consensus 77 ~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~ 108 (207)
+++.|+++.+|+.++.+.++.|+++.+++.+.
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 44
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.78 E-value=0.0003 Score=60.66 Aligned_cols=131 Identities=18% Similarity=0.088 Sum_probs=98.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Q 028586 1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKL--TLAVFLEIFLLSLLGVSLALNLY 78 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~g~~~~~~~~ 78 (207)
++.+++++|.+.+.-|...++ .|+..+...=-+++.++..+.....+++...+. +.+....++.. .++.+..+.+.
T Consensus 173 ~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~lf~~y~l~ 250 (334)
T PF06027_consen 173 ALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALCLFLFYSLV 250 (334)
T ss_pred HHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHHHHHHHHHH
Confidence 467899999999999998764 788888777777788887777666666544323 33433332322 33445666677
Q ss_pred HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
...+++++|+...+=.-+...++++...++++|++++. .++|.++.++|.++...
T Consensus 251 p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 88899999987777777888999999999999999764 58999999999987654
No 45
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.71 E-value=0.00089 Score=55.91 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHh---CCCC----chHHHHHHHHHHHHHHHHHHHHHhhccCC---------------CCCHHHHHHHHHH
Q 028586 9 ASVYFLTEDSFN---QGLN----PHIYVTYRHAAGSLMMFPFAYFLERKIRP---------------KLTLAVFLEIFLL 66 (207)
Q Consensus 9 g~~~i~~K~~l~---~~~~----p~~l~~~R~~~a~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 66 (207)
..+.+.+|.+=+ +|-| |+.-+..-|+-=..++..+..++.|...+ +.+++.+..-.++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 367788887642 2333 55555555555567777666555442211 1122211112233
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCC
Q 028586 67 SLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVP 146 (207)
Q Consensus 67 gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~ 146 (207)
- .....+.|.|+.+|+|+.=-.+-...-+|+-+++.-+++.++..+ +|+|+.....|++.+...+ ..
T Consensus 96 D----i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d---~~ 162 (372)
T KOG3912|consen 96 D----IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD---VH 162 (372)
T ss_pred H----HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee---cc
Confidence 3 344567789999999998888888889999999999999998654 6999999999998763211 00
Q ss_pred CCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCce
Q 028586 147 SLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFF 196 (207)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~ 196 (207)
. .++ | -...++...||++.+.+-+.-|.-.++-+|.+++++..+
T Consensus 163 ~-~~~---p--~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~p 206 (372)
T KOG3912|consen 163 L-VTD---P--YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAP 206 (372)
T ss_pred c-ccC---C--ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCH
Confidence 0 000 0 011234568999999999999999999999998877444
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.66 E-value=0.0014 Score=54.65 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028586 57 LAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM 135 (207)
Q Consensus 57 ~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ 135 (207)
.+.+..-++.|++- ...|...+.+.++.+.+++--+. ..+=+.+.+++.++++|.-+.+++ ..-.+++++.++|+.
T Consensus 42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~ 118 (269)
T PF06800_consen 42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVI 118 (269)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHH
Confidence 47777777777764 67899999999999999887665 467777889999999998765542 223447788888888
Q ss_pred HHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 028586 136 VIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVS 187 (207)
Q Consensus 136 ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~ 187 (207)
+.+..++++.. .+++.+...|.+..+++++.|..|.+..|-
T Consensus 119 lts~~~~~~~~-----------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 119 LTSYQDKKSDK-----------SSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred Hhccccccccc-----------cccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 77643222110 012345567999999999999999999665
No 47
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.63 E-value=1.6e-06 Score=71.12 Aligned_cols=147 Identities=19% Similarity=0.202 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHH
Q 028586 25 PHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFII 104 (207)
Q Consensus 25 p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~il 104 (207)
|..=.++-...=+++--|+..+++ + .-+..|...+++++.-+- .+.+.-.+.|||+-+...++-.-.-..+.++
T Consensus 48 Pt~QtFl~Y~LLalVY~~~~~fR~-~----~~~~~~~hYilla~~DVE-aNy~vV~AyQyTsmtSi~lLDcwaip~v~~l 121 (336)
T KOG2766|consen 48 PTSQTFLNYVLLALVYGPIMLFRR-K----YIKAKWRHYILLAFVDVE-ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL 121 (336)
T ss_pred ccHHHHHHHHHHHHHHhhHHHhhh-H----HHHHHHHHhhheeEEeec-ccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence 555556666665666666665532 2 113345568888887543 3445567889999999998887555567889
Q ss_pred HHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 028586 105 AVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIM 184 (207)
Q Consensus 105 a~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~ 184 (207)
+++++|.|-++ .|+.|+++|+.|++.+++.+-. .++..++++..+||.+++++|-+||+.++.
T Consensus 122 sw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~-----------agd~aggsnp~~GD~lvi~GATlYaVSNv~ 184 (336)
T KOG2766|consen 122 SWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVH-----------AGDRAGGSNPVKGDFLVIAGATLYAVSNVS 184 (336)
T ss_pred HHHHHHHHHhh------heeeeEEeEecceEEEEEeeec-----------cccccCCCCCccCcEEEEecceeeeecccc
Confidence 99999988754 4699999999999887743211 111234566789999999999999999998
Q ss_pred hhhccCCcCC
Q 028586 185 QVSNPSTSFR 194 (207)
Q Consensus 185 ~k~~~~~~~~ 194 (207)
..-+.|+.|.
T Consensus 185 EEflvkn~d~ 194 (336)
T KOG2766|consen 185 EEFLVKNADR 194 (336)
T ss_pred HHHHHhcCcH
Confidence 8888887764
No 48
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.35 E-value=0.00044 Score=58.22 Aligned_cols=114 Identities=20% Similarity=0.268 Sum_probs=78.0
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHH
Q 028586 54 KLTLAVFL-EIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLV 132 (207)
Q Consensus 54 ~~~~~~~~-~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~ 132 (207)
..++++.. ++.-.|+. ..+.-.+.+++++|++.+.=+..=+..|+|+.+.+.+|.-||+++. -..-+.+..+
T Consensus 77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~ 149 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAV 149 (349)
T ss_pred CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhh
Confidence 34565544 44445554 4678889999999999998888889999999999999999998763 1223333444
Q ss_pred hHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 133 GVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 133 Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
|+++.+ ++..+ .+ ..|..++.+|+++-++==.+.+.+.+|.|
T Consensus 150 Glflft-~KsTq-----------------f~-i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 150 GLFLFT-YKSTQ-----------------FN-IEGFFLVLAASLLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred heeEEE-ecccc-----------------ee-ehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence 455544 33221 11 46888888888877766666666666665
No 49
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.25 E-value=0.0088 Score=50.71 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHH--Hhhc-cCC---CCCHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFN-QGLNPHIYVTYRHAAGSLMMFPFAYF--LERK-IRP---KLTLAVFLEIFLLSLLGVSLA 74 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~-~~~~p~~l~~~R~~~a~~~l~~~~~~--~~~~-~~~---~~~~~~~~~~~~~gl~g~~~~ 74 (207)
++..++-|...+.-+...+ ++.+|.+..++-.+++.++..+.... .... +.. ...++.+..++...+.+. ..
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~-~g 238 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGA-LG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHH-HH
Confidence 3456677778888887774 46899999999999998888777655 1111 000 112334555666666664 45
Q ss_pred HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+.+.+.-.+..+|...+++..+--+++.+++.++++|+++.. +|.|+++.+.|..+=.
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 666677789999999999999999999999999999999765 5999999999998754
No 50
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.19 E-value=0.0015 Score=47.45 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=74.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
|+++.++||.+.++.|.+.. +.++..-.. |..--...+ + .+++ +. .++.-.-.....|+.
T Consensus 1 ~l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~L-----l--------~n~~---y~--ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 1 LLLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFL-----L--------LNPK---YI--IPFLLNQSGSVLFFL 60 (113)
T ss_pred CeeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHH-----H--------HhHH---HH--HHHHHHHHHHHHHHH
Confidence 57889999999999999975 355443331 321111110 0 1122 22 234444455677889
Q ss_pred HhhccChhhHHHhh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 81 SMKYVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 81 gl~~t~a~~a~il~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
.+..++-+.+.-+. ++.=++|++.++++.+|..++ +.++|+.+.+.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~------~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISR------RTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccch------hHHHHHHHHHcCeee
Confidence 99999999998886 678888888888777776644 359999999999865
No 51
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.19 E-value=0.0022 Score=46.49 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 66 LSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 66 ~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
..+.+..+.+.++..++++.+.+.| ++...+--+.+.+.++++++|++|+. +++|+.+.++|++.+..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 4566667778888999999999988 45566777888999999999999875 59999999999998863
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.16 E-value=0.012 Score=42.64 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 68 LLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 68 l~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+.+....+.+...++++.+.+.| ++....--+.+.+.+.+++||++|+. |++|+.+.+.|++.+.
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 44556677888899999999988 66667888888999999999999865 6999999999998763
No 53
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.16 E-value=0.0095 Score=51.61 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH--HHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAY--FLERK---IRPKLTLAVFLEIFLLSLLGVSLALN 76 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~--~~~~~---~~~~~~~~~~~~~~~~gl~g~~~~~~ 76 (207)
+++.++||++++-.|+.-+.+..-+..+ .-+ ++ -++.|+.. +..+. .....+.+.+..-++.|++- ...|.
T Consensus 13 ~i~~~~~GS~~~p~K~~k~w~wE~~W~v-~gi-~~-wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W-~iG~i 88 (345)
T PRK13499 13 LIGGASSGSFYAPFKKVKKWSWETMWSV-GGI-FS-WLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW-GIGGI 88 (345)
T ss_pred HHHHHHhhcccccccccCCCchhHHHHH-HHH-HH-HHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH-Hhhhh
Confidence 5788999999999998422222222221 111 11 11122111 11110 01124566676767777764 56799
Q ss_pred HHHHHhhccChhhHHHh-hccchHHHHHHHHHhhhccc---cccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCC
Q 028586 77 LYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIV---DVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAP 152 (207)
Q Consensus 77 ~~~~gl~~t~a~~a~il-~~~~P~~~~ila~~~~~e~~---~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 152 (207)
.++.++++.+.+.+--+ ..++=+...++..++++|=- +.++ +..-.+|+++.++|+++.........+
T Consensus 89 ~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~~------ 160 (345)
T PRK13499 89 TYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKER------ 160 (345)
T ss_pred hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhccc------
Confidence 99999999999988554 45777888888888888643 3322 445678999999999987642111110
Q ss_pred ccCCCC--CCCcchHHHHHHHHHHHHHHHHHH
Q 028586 153 IHLGTN--SVHENWLKGSILTVASCILWSSFY 182 (207)
Q Consensus 153 ~~~~~~--~~~~~~~~G~ll~l~aa~~~a~y~ 182 (207)
+... +++.+...|.++.+.|.+.++.|+
T Consensus 161 --~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 161 --KMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred --ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 0000 123456789999999999999999
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.11 E-value=0.0024 Score=47.05 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 65 LLSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 65 ~~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
+..+.+....+.++..++++.+.+.| ++...+--+.+.+++.++++|++|+. |++|+.+.++|++.+..
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 34566667778889999999999988 44456788888999999999999875 69999999999988864
No 55
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0033 Score=45.10 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 65 LLSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 65 ~~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
++.+.+....+.+.-.++++.+.+.| ++....--+.+.+.++++++|+++. .|++|+.+.++|++.+.
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~------~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL------IKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH------HHHHHHHHHHHHHHHhh
Confidence 34455667778888999999999988 6777788889999999999999976 46999999999998875
No 56
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.97 E-value=0.033 Score=46.82 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 3 LLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKI--RPKLTLAVFLEIFLLSLLGVSLALNLYFA 80 (207)
Q Consensus 3 ~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~gl~g~~~~~~~~~~ 80 (207)
..++-||.++..-|.. ++|+.+=...-.+.-...-+.+.++..... ...-+.+++..+...|... .+.-.+|..
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHHH
Confidence 3466788888888864 367665544444333333222222222211 0112456777788888874 678899999
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
|-+..+-+.-+++++..|.+..+++.++++|+++.. +..+-+..-.|.++..
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999764 5788888888876654
No 57
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.87 E-value=0.0058 Score=43.93 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 68 LLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 68 l~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+.+....+.+...++++.|.+.| ++...+--+.+.+.+.+++||++|+. |++|+.+.++|++.+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 55566778888899999999988 66667888889999999999999875 6999999999999875
No 58
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.78 E-value=0.018 Score=43.46 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHh----CCC-CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028586 8 VASVYFLTEDSFN----QGL-NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASM 82 (207)
Q Consensus 8 wg~~~i~~K~~l~----~~~-~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl 82 (207)
-++..+..+.+++ +.. ||+.-++.-+..+.+.+..+....+++..++.+..+| +...-|++| ..+..+....+
T Consensus 8 ~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG-~~~V~~~~~~v 85 (138)
T PF04657_consen 8 LAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLG-VFFVLSNIILV 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHH-HHHHHHHHHHh
Confidence 3444444444443 224 4999999999999999887776654432222222233 334477777 45677788889
Q ss_pred hccChhhHHHhhc-cchHHHHHHHHH--hhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 83 KYVHPTFMTAVVN-TIPCMTFIIAVV--FRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 83 ~~t~a~~a~il~~-~~P~~~~ila~~--~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
...+++.+..+.- -+=+...++-++ +..|| ++.+..|++|+++.++|+.+
T Consensus 86 p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 86 PRLGAALTTILIVAGQLIASLLIDHFGLFGAPK----RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence 9999998876654 444444444443 21122 22345689999999999863
No 59
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.64 E-value=0.0063 Score=52.08 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHHH-HHHHHHhhccC---C--CCCHHHHHHHHHHHHHHHHHH
Q 028586 4 LQICVASVYFLTEDSF---NQGLNPHIYVTYRHAAGSLMMF-PFAYFLERKIR---P--KLTLAVFLEIFLLSLLGVSLA 74 (207)
Q Consensus 4 ~~~~wg~~~i~~K~~l---~~~~~p~~l~~~R~~~a~~~l~-~~~~~~~~~~~---~--~~~~~~~~~~~~~gl~g~~~~ 74 (207)
..+..+.-.++.|..+ ++.+|++.+..+---++..+++ |+....+.... . ..+.. .....+.+++ ....
T Consensus 171 s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~-~f~~ 248 (316)
T KOG1441|consen 171 SNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVL-AFLL 248 (316)
T ss_pred HHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHH-HHHH
Confidence 4456667778888888 3469999999999999999998 88766544322 1 12222 3334444544 4677
Q ss_pred HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
|..-|+.+..++|-.=++.-..==.++...++++++|+++.. +.+|.++++.|+.+=+
T Consensus 249 Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 249 NLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 888999999999988777766444455567888888888765 5999999999998754
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.60 E-value=0.016 Score=48.53 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+..++.+..+.++.|.. ++||.+... -+.++.++-..+.....++. ..+++.+ .-.+-|++- ...+.+++.+
T Consensus 144 l~stigy~~Y~~~~~~~---~~~~~~~~l-PqaiGm~i~a~i~~~~~~~~--~~~k~~~-~nil~G~~w-~ignl~~~is 215 (269)
T PF06800_consen 144 LISTIGYWIYSVIPKAF---HVSGWSAFL-PQAIGMLIGAFIFNLFSKKP--FFEKKSW-KNILTGLIW-GIGNLFYLIS 215 (269)
T ss_pred HHHHHHHHHHHHHHHhc---CCChhHhHH-HHHHHHHHHHHHHhhccccc--ccccchH-HhhHHHHHH-HHHHHHHHHh
Confidence 35567777788887763 478877665 33444333322211111111 1223333 335566653 4567889999
Q ss_pred hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
.+..+.+.+=.+..+.+++..+.+.+++||+=++|+ -...++|+++.++|.++
T Consensus 216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999866554 23455677777777653
No 61
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.19 Score=42.78 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=103.1
Q ss_pred HHHHHHHHHhC-CCCchHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 028586 11 VYFLTEDSFNQ-GLNPHIYV-TYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPT 88 (207)
Q Consensus 11 ~~i~~K~~l~~-~~~p~~l~-~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~ 88 (207)
..+.-|.++.+ +.|...++ .++.+...+.+...-..+. -+.+++++++.+..+-..++- .+....-..+++|.+..
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-v~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVp 104 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGL-VNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVP 104 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhce-eecCCcChHHHHHHccHHHHH-HHHHHHccccccccCch
Confidence 34556777754 33333222 3777776666554321111 112346677666666666653 33444455789999999
Q ss_pred hHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHH
Q 028586 89 FMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGS 168 (207)
Q Consensus 89 ~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ 168 (207)
.-+++=+..|+++++.-..+++.+++. ..+..+....+|.......+ ...+ ..|-
T Consensus 105 m~tv~kn~tii~~ai~E~lf~~~~~~~------~v~~Sv~~m~~~s~~~~~~d------------------~sf~-~~gY 159 (314)
T KOG1444|consen 105 MFTVFKNLTIILTAIGEVLFFGKRPSN------KVWASVFAMIIGSVAAAFTD------------------LSFN-LRGY 159 (314)
T ss_pred HHHHHhhchHHHHHHhHHhhcCcCchh------hHHHHHHHHHHHHHhhcccc------------------ceec-chhH
Confidence 999999999999999999998866654 45777888777776644211 0111 3489
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCc
Q 028586 169 ILTVASCILWSSFYIMQVSNPSTS 192 (207)
Q Consensus 169 ll~l~aa~~~a~y~v~~k~~~~~~ 192 (207)
.+.+...++-+.|.+..|+..+..
T Consensus 160 ~w~~~n~~~~a~~~v~~kk~vd~~ 183 (314)
T KOG1444|consen 160 SWALANCLTTAAFVVYVKKSVDSA 183 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999987644
No 62
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.25 E-value=0.014 Score=40.94 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHH
Q 028586 66 LSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLA 129 (207)
Q Consensus 66 ~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l 129 (207)
..+.+....+.++..++++.+.+.| ++...+-.+.+.+.+.++++|++|.+| +.|+.+
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 3444666777899999999999999 666778999999999999999998764 777764
No 63
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.13 E-value=0.0078 Score=51.23 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 66 LSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 66 ~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
.|+.-..+.+.+.+.++.+.+++.-+-+..+.-++..+++..++|||++++ .+.|+.+++.|..++..
T Consensus 55 ~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 55 IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 444444566778889999999999999999999999999999999999765 58999999999987654
No 64
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.76 E-value=0.0057 Score=50.87 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028586 10 SVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTF 89 (207)
Q Consensus 10 ~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~ 89 (207)
..++..|+ +.+..+.+....+=..++.+.-+..+..-..-.. +..+||++.+..+|++| +++|.+...|+|.--|+-
T Consensus 205 svyIilR~-iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGp 281 (346)
T KOG4510|consen 205 SVYIILRY-IGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGP 281 (346)
T ss_pred hHHHHHHH-hhccccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhh-hHHHHHHHHHhhhhccCC
Confidence 44555554 4344666655555555555444433322121122 34578888888899998 688999999999999999
Q ss_pred HHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 90 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 90 a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
.+++.++.-++.++.-.++++|-+++ +.|.|.++.+...+...
T Consensus 282 vaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 282 VAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMVVSSTVWVA 324 (346)
T ss_pred eehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeeeehhHHHHH
Confidence 99999999999999999999998765 45888887776665544
No 65
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.066 Score=43.96 Aligned_cols=106 Identities=20% Similarity=0.146 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCC
Q 028586 70 GVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLK 149 (207)
Q Consensus 70 g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~ 149 (207)
...+.+...+.++||.+=-.+-+=-++-|+=+++++.++.+++-+|+ |...+++.++|+.+.. ++.+...
T Consensus 94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~--- 163 (337)
T KOG1580|consen 94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVG--- 163 (337)
T ss_pred HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccC---
Confidence 45667778889999998777777678999999999999988887664 6899999999998764 4422211
Q ss_pred CCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 150 GAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 150 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
....+....|.++.++|---=+.-...|+|..+.|.
T Consensus 164 --------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq 199 (337)
T KOG1580|consen 164 --------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ 199 (337)
T ss_pred --------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhc
Confidence 112344568999999998888888888988887775
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.71 E-value=0.2 Score=43.66 Aligned_cols=131 Identities=15% Similarity=0.262 Sum_probs=94.8
Q ss_pred hhhHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC--C-CCHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQ---GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP--K-LTLAVFLEIFLLSLLGVSLAL 75 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~---~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~gl~g~~~~~ 75 (207)
++.++.+|.+.++.|.-.++ .+|--.+-.+=-++..++++|..+...+-..+ . .+......++..+++|.++.-
T Consensus 253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD 332 (416)
T KOG2765|consen 253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD 332 (416)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence 35788999999999987753 36655666666777888888776653322211 1 123445567888999999999
Q ss_pred HHHHHHhhccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 76 NLYFASMKYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 76 ~~~~~gl~~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
.++..|+-.|++-.+++=+. ++|+ .++.-.++.+.++ +...++|.+..++|-+.++.
T Consensus 333 ylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~------S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 333 YLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHP------SALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCC------CHHHHHHHHHHHHHHhheec
Confidence 99999999999999988776 6665 4455555555555 45679999999999888764
No 67
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.062 Score=44.11 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028586 58 AVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 137 (207)
Q Consensus 58 ~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll 137 (207)
..|..+.++++.+ ++.|.+.|.-+.+-+|-..+++..+--+|+++.+.+++..+++.| +|+|..+.+.|...=
T Consensus 239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 3456677788875 688999999999999999999999999999999999999999765 599999999998653
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.46 E-value=2.4 Score=36.90 Aligned_cols=134 Identities=11% Similarity=0.074 Sum_probs=74.6
Q ss_pred hhHHHHHHHH-------HHHHHHHhCCCCchHHHHHHHH---HHHHHHH-HHHHHHhhc-cC------CCCCHHHHHHH-
Q 028586 3 LLQICVASVY-------FLTEDSFNQGLNPHIYVTYRHA---AGSLMMF-PFAYFLERK-IR------PKLTLAVFLEI- 63 (207)
Q Consensus 3 ~~~~~wg~~~-------i~~K~~l~~~~~p~~l~~~R~~---~a~~~l~-~~~~~~~~~-~~------~~~~~~~~~~~- 63 (207)
++.+..+.+. +..+.+.+.+.+|.....-.+. +++.+.- .++.++.+| +. ...+++++.+-
T Consensus 181 isgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~ 260 (345)
T PRK13499 181 MSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNV 260 (345)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHH
Confidence 3445555555 4555544456787766555554 4544443 223222111 11 11122233333
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhccChhhHHH---hh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 64 ---FLLSLLGVSLALNLYFASMKYVHPTFMTA---VV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 64 ---~~~gl~g~~~~~~~~~~gl~~t~a~~a~i---l~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
.+.|++ -...+.+|.++-+..+...+.+ +. .+.-++..+.+. ++||+=+-.++..+..++|+++.++|+.+
T Consensus 261 l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~l 338 (345)
T PRK13499 261 LLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANI 338 (345)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence 334443 2455667888888776655544 44 455566666666 58998663334456678899999999988
Q ss_pred Hh
Q 028586 137 IA 138 (207)
Q Consensus 137 l~ 138 (207)
+.
T Consensus 339 ig 340 (345)
T PRK13499 339 VG 340 (345)
T ss_pred Hh
Confidence 75
No 69
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.073 Score=44.60 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhh----ccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccch
Q 028586 25 PHIYVTYRHAAGSLMMFPFAYFLER----KIRPK--LTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIP 98 (207)
Q Consensus 25 p~~l~~~R~~~a~~~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P 98 (207)
|....+++.+....+-..+.....+ ...++ ++.+..+.+.=+.+.- .+.-.+-+..++|.+.+.=-+=-.+.-
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchhh
Confidence 7788888888876666555443222 11122 3333222222222211 111122234566665553322234677
Q ss_pred HHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHH
Q 028586 99 CMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILW 178 (207)
Q Consensus 99 ~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~ 178 (207)
+|+++++++++|+|-+... ..+..+.+.|-.+ |-+ +|+.++.-. ..|.++.+.|.++-
T Consensus 140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~l-----Gvd----------qE~~~~~ls-~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGL-----GVD----------QEGSTGTLS-WIGVIFGVLASLAV 197 (347)
T ss_pred hHHHHhHHhhccccccccc------ceeehhheehhee-----ccc----------cccccCccc-hhhhHHHHHHHHHH
Confidence 8999999999999965432 3344444444322 111 111122233 37999999999999
Q ss_pred HHHHHHhhhcc
Q 028586 179 SSFYIMQVSNP 189 (207)
Q Consensus 179 a~y~v~~k~~~ 189 (207)
|...+..||..
T Consensus 198 Alnaiytkk~l 208 (347)
T KOG1442|consen 198 ALNAIYTKKVL 208 (347)
T ss_pred HHHHHhhheec
Confidence 99999998654
No 70
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=0.059 Score=45.92 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 66 LSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 66 ~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
.|++-..++...=|.+..+.+++..+-+-++.-+...+++..++|||++++ -.+|+.+|++|..+++.
T Consensus 69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence 455544555666667888889999998999999999999999999999875 48899999999887764
No 71
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.86 E-value=0.013 Score=48.28 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028586 4 LQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMK 83 (207)
Q Consensus 4 ~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~ 83 (207)
=++.||+...+.... +=+|.+=..- ..+++++.....++. .+|..+.+.+.--++-|.+ -...|...+-+.+
T Consensus 10 P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~---~~p~~T~~~~iv~~isG~~-Ws~GQ~~Qfka~~ 81 (288)
T COG4975 10 PALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLF---VSPELTLTIFIVGFISGAF-WSFGQANQFKAIQ 81 (288)
T ss_pred HHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHhee---ecCccchhhHHHHHHhhhH-hhhhhhhhhhhee
Confidence 356788776665432 2345443322 233444444433332 2244566655555555554 3567999999999
Q ss_pred ccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCc
Q 028586 84 YVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE 162 (207)
Q Consensus 84 ~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~ 162 (207)
+.+.++|--+.+ ++-+-+.+.+.+.++|--+..+. ..-.+++++.++|+.+-+..+.+ |++ .++.+
T Consensus 82 ~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~-----nk~------~~~~~ 148 (288)
T COG4975 82 LIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRN-----NKE------EENPS 148 (288)
T ss_pred eeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccc-----ccc------ccChH
Confidence 999999987764 77777888888999997654331 11223445556666554321110 111 12334
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc
Q 028586 163 NWLKGSILTVASCILWSSFYIMQVSN 188 (207)
Q Consensus 163 ~~~~G~ll~l~aa~~~a~y~v~~k~~ 188 (207)
+...|...++.|.+.|-.|.++.+-.
T Consensus 149 n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 149 NLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred hhhhheeeeeeeccceeeeEeeeccc
Confidence 45568888888888888887775443
No 72
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.79 E-value=0.45 Score=38.25 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028586 72 SLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM 135 (207)
Q Consensus 72 ~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ 135 (207)
...+.+..+.++|.++..-+....+.++++.+++.++++|+++.. +++|..+.+.|+.
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 445566778899999999999999999999999999999999765 5899999888864
No 73
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=91.26 E-value=0.5 Score=39.73 Aligned_cols=134 Identities=15% Similarity=0.153 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHH
Q 028586 53 PKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHP-TFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASL 131 (207)
Q Consensus 53 ~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a-~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~ 131 (207)
++.+.|++.....+=+ ..+..-+.++++-=+ ..=-++-+-.++-++++++++.++|-+.+ |...+++.-
T Consensus 60 ~kiplk~Y~i~V~mFF----~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT 129 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMFF----IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT 129 (330)
T ss_pred CCCchhhhheehheee----eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence 3456666544333222 223334455554211 12223335678889999999998887665 589999999
Q ss_pred HhHHHHhhhcCCCCCCCCCCCc-cCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCcee
Q 028586 132 VGVMVIAFYKGPAVPSLKGAPI-HLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFS 197 (207)
Q Consensus 132 ~Gv~ll~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~~ 197 (207)
+|+++-...+.++.+. ..+.. +++.......|..|..++..+-+.-|...++|+.+-|||.....
T Consensus 130 iGiiIcTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~ 195 (330)
T KOG1583|consen 130 IGIIICTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWK 195 (330)
T ss_pred hhheeEEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 9998765444333221 00000 01111223357789999999999999999999999888875443
No 74
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.09 E-value=5.6 Score=33.96 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=92.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhc--cchHHH
Q 028586 24 NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVN--TIPCMT 101 (207)
Q Consensus 24 ~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~--~~P~~~ 101 (207)
+|..+.+..-+.+.++-. .+...++.. ...++.|..+...++.. .+...+.+.+++|.+=-.-.+==+ ++|+
T Consensus 50 ~~~fL~~~q~l~~~~~s~--~~l~~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPV-- 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSY--AMLKWWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPV-- 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHH--HHHhccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHH--
Confidence 356666666666654442 223222222 22345677778888875 566778899999987333322222 6776
Q ss_pred HHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 028586 102 FIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSF 181 (207)
Q Consensus 102 ~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y 181 (207)
++++.+..+.|.+.. |.+-..+.-.|+.+....+..+ ... ..+.++...|..++...-+.=+.-
T Consensus 124 mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~~---------~~g~~ns~~G~~Ll~~~L~fDgfT 187 (327)
T KOG1581|consen 124 MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SSS---------KSGRENSPIGILLLFGYLLFDGFT 187 (327)
T ss_pred HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Ccc---------ccCCCCchHhHHHHHHHHHHHhhH
Confidence 468888898888754 4666666667876544332221 100 122344568999999998888888
Q ss_pred HHHhhhccCCcC
Q 028586 182 YIMQVSNPSTSF 193 (207)
Q Consensus 182 ~v~~k~~~~~~~ 193 (207)
+..|+++.++|.
T Consensus 188 n~tQd~lf~~~k 199 (327)
T KOG1581|consen 188 NATQDSLFKKYK 199 (327)
T ss_pred HhHHHHHhccCC
Confidence 999999988664
No 75
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.77 E-value=5.1 Score=30.62 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHh-hccchHHHH
Q 028586 24 NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTF 102 (207)
Q Consensus 24 ~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il-~~~~P~~~~ 102 (207)
+|+.-.+..+..+.+.+..+.+..+++.......+.=+|...-|++|. .+-..-.......+++....+ ..-+=+..+
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl 111 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFVTSSILLAPRLGAATTIALVIAGQLIMGL 111 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence 599999999999999988887763332211111111123445556663 344444455556666654433 333333333
Q ss_pred HHHHHh-hhccccccCCCCchhhhhHHHHHHhHHHH
Q 028586 103 IIAVVF-RLEIVDVRSPRGIAKILGTLASLVGVMVI 137 (207)
Q Consensus 103 ila~~~-~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll 137 (207)
++-.+= ++++ +++++..+++|+++.++|++++
T Consensus 112 liD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 112 LIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 333221 2221 2445778899999999995554
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.75 E-value=0.3 Score=40.40 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhH
Q 028586 55 LTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGV 134 (207)
Q Consensus 55 ~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv 134 (207)
.++..|.. .+-|++- ...+.+++.+-+..+.+.+=.+..+--+...+-+.+++|||=+.|++ ...++|+++.++|+
T Consensus 205 ~~K~t~~n-ii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvga 280 (288)
T COG4975 205 FNKYTWLN-IIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGA 280 (288)
T ss_pred hHHHHHHH-HhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHh
Confidence 34444443 5566654 45678888888877776665566666666777788999999887764 45677999999998
Q ss_pred HHHh
Q 028586 135 MVIA 138 (207)
Q Consensus 135 ~ll~ 138 (207)
.++.
T Consensus 281 i~lg 284 (288)
T COG4975 281 ILLG 284 (288)
T ss_pred hhhh
Confidence 8764
No 77
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.44 E-value=1.2 Score=37.82 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=82.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhcc
Q 028586 22 GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP-----KLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNT 96 (207)
Q Consensus 22 ~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~ 96 (207)
.+++..+.++-.++.++.-...... ....++ +.+++-++.+++.+.+| +..|.+.++-++.-++-.-+.++.+
T Consensus 199 k~s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~tt 276 (327)
T KOG1581|consen 199 KVSSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMTT 276 (327)
T ss_pred CccHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHHH
Confidence 5788888888877776665544221 221111 23456677888899987 5678888899998888888888888
Q ss_pred chHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 97 IPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 97 ~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
==++..+++.+.++.++++.| |+|..+.+.|..+=+
T Consensus 277 Rk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 277 RKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence 888999999999999998875 788999998887643
No 78
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=86.39 E-value=17 Score=31.57 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028586 3 LLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERK-----IRPKLTLAVFLEIFLLSLLGVSLALNL 77 (207)
Q Consensus 3 ~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~gl~g~~~~~~~ 77 (207)
+..++-|+.++-.|+.-+.....+.++ +.+-+-+.+|+..-...- .....+.+.+...++.|++=. .....
T Consensus 14 iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWG-IGglt 89 (344)
T PF06379_consen 14 IGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWG-IGGLT 89 (344)
T ss_pred HHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHh-cchhh
Confidence 345566777777776533233333333 333344445554321110 001234456666777777632 34566
Q ss_pred HHHHhhccChhhH-HHhhccchHHHHHHHHHhhhcccc--ccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCcc
Q 028586 78 YFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVD--VRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIH 154 (207)
Q Consensus 78 ~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~--~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 154 (207)
|=.+++|.+.+.. ++.+.+.-.+-.++--++.++ .+ ..++-++..++|++++++|+.+.... |... +.
T Consensus 90 fGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~K-------e~ 160 (344)
T PF06379_consen 90 FGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKA-GSMK-------EK 160 (344)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHH-HHhh-------hh
Confidence 7778888877654 222333333333332223221 11 11223567789999999999887532 2110 00
Q ss_pred CCC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 028586 155 LGT-NSVHENWLKGSILTVASCILWSSFYIM 184 (207)
Q Consensus 155 ~~~-~~~~~~~~~G~ll~l~aa~~~a~y~v~ 184 (207)
+.. .....+..+|.+..+.|.+--|.+++-
T Consensus 161 ~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 161 ELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred hhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 000 112234567999999988877777763
No 79
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=80.91 E-value=3.4 Score=29.67 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHHHHHHHhCCCCchHHH--HHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028586 1 MILLQICVASVYFLTEDSFNQGLNPHIYV--TYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLY 78 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~--~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~ 78 (207)
|+.+.++||.+..+.|.+.. +.+..--. -+|.+ .++.+.. -++++.+. -+++--.| ..+|
T Consensus 8 lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~-----------lqe~~tl-~l~w~Y~i-PFllNqcg----Saly 69 (125)
T KOG4831|consen 8 LVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIA-----------LQEMKTL-FLNWEYLI-PFLLNQCG----SALY 69 (125)
T ss_pred HHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHH-----------HHHHHHH-HHhHHHHH-HHHHHHhh----HHHH
Confidence 46788999999999998753 33322111 11111 0111100 11222221 13333333 4567
Q ss_pred HHHhhccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028586 79 FASMKYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 137 (207)
Q Consensus 79 ~~gl~~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll 137 (207)
|.-++.++-+.|.-+.+ +.=.|+.+.+..+ +|+.. +++.++|..+.+.|+.+.
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~-----g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQ-----GGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccc-----cceeehhhhHHhhhhhhe
Confidence 78888888887776554 5666777777765 45543 345688999998888654
No 80
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.87 E-value=21 Score=30.66 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHHHhhc-----cCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 9 ASVYFLTEDSFN-QGLNPHIYVTYRHAAGSLMMFPFAYFLERK-----IRP-KLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 9 g~~~i~~K~~l~-~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+...+..|...+ .+.+-+.+..+.-+++...+....+..+.. ..+ ..+...+..+.+-+++|..+ ..+-++.
T Consensus 170 a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~i-sy~s~~c 248 (314)
T KOG1444|consen 170 AAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGI-SYTSFLC 248 (314)
T ss_pred HHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345566676664 247778888888888877776665443211 001 11234456677777777655 4566778
Q ss_pred hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
.+.+||..-++.....=..+.+...++.+++.++ ...+|+.+++.|-+.=+
T Consensus 249 t~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 249 TRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence 8888888777777444444555556667777765 46899999999976543
No 81
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=77.69 E-value=40 Score=29.07 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCCH----HHHHHHHHHHH
Q 028586 4 LQICVASVYFLTEDSFNQG----LNPHIYVTYRHAAGSLMMFPFAYFLERKIRP-------KLTL----AVFLEIFLLSL 68 (207)
Q Consensus 4 ~~~~wg~~~i~~K~~l~~~----~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~-------~~~~----~~~~~~~~~gl 68 (207)
+.++-|.-..+.+..+.++ =+|++....=.-.-.+.++|..+..|+.... ..+. +....+.+.|+
T Consensus 172 aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~ 251 (349)
T KOG1443|consen 172 ASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGL 251 (349)
T ss_pred HHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHH
Confidence 3444455555666666432 3477666655555566666766665542211 1111 22222333333
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028586 69 LGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 137 (207)
Q Consensus 69 ~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll 137 (207)
+. ++--...+.-++.|+.-.-++.--.-=+.+.+++.++.+|+++. ..+.|..++..|+..=
T Consensus 252 la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~------lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 252 LA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL------LNWLGLAICLAGILLH 313 (349)
T ss_pred HH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh------hHHHHHHHHHHHHHHh
Confidence 32 22233455556667666555555556677888999999999974 4699999999999764
No 82
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=72.95 E-value=52 Score=27.16 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=77.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhccCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccch
Q 028586 23 LNPHIYVTYRHAAGSLMMFPFAYFLERKIRP----KLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIP 98 (207)
Q Consensus 23 ~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P 98 (207)
...++-.+|..+++..++..+.+..+..... .++...+.++++-|+..+. -..+--+.++-++++.=+..-++.-
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svg-iSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVG-ISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhh-hhhccceeEeehhhhHHHHHHHhhh
Confidence 5577889999999999998888765532211 2334455677887877543 3455667788888888888877777
Q ss_pred HHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 99 CMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 99 ~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
.-..+.+.++++|+.+.. ++..+.+++....+
T Consensus 262 lp~alaGlvffdap~nf~------si~sillGflsg~i 293 (309)
T COG5070 262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAI 293 (309)
T ss_pred ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence 777888899999998753 57788887766544
No 83
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=72.60 E-value=42 Score=28.64 Aligned_cols=130 Identities=17% Similarity=0.290 Sum_probs=79.6
Q ss_pred hhhHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHH----HHhhcc---CCCCCHHHHHHH---------H
Q 028586 2 ILLQICVASVYFLTEDSFN-QGLNPHIYVTYRHAAGSLMMFPFAY----FLERKI---RPKLTLAVFLEI---------F 64 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~-~~~~p~~l~~~R~~~a~~~l~~~~~----~~~~~~---~~~~~~~~~~~~---------~ 64 (207)
++++++=+.-++.=.+-+. .+++|...+.+.-+++.+++..++. +...+. .++-.+.||... +
T Consensus 182 iiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l 261 (372)
T KOG3912|consen 182 IIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSL 261 (372)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchh
Confidence 4566777766666555553 4699999999999888666544332 211111 122234555542 2
Q ss_pred HHHHHHHHHHHHHHHH-Hh---hccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028586 65 LLSLLGVSLALNLYFA-SM---KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 137 (207)
Q Consensus 65 ~~gl~g~~~~~~~~~~-gl---~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll 137 (207)
.+.+.|......+|+. |+ ++.||++=.++-.+=-.++-+++.....|+++.- ++.|.++-..|+++-
T Consensus 262 ~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 262 AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMGIILY 332 (372)
T ss_pred HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3444444444333332 22 3455666666666666666677778889999764 589999999999764
No 84
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=68.41 E-value=25 Score=29.81 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=71.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhh--ccC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccc
Q 028586 23 LNPHIYVTYRHAAGSLMMFPFAYFLER--KIR---PKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTI 97 (207)
Q Consensus 23 ~~p~~l~~~R~~~a~~~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~ 97 (207)
-+...++++...++.+.++........ ..+ .+.+.|...+.++.+..|. +.+.+-..-++.-+|..|+.+...=
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gy-lG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGY-LGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhH-hhHHHHHHHHHHhchhHHHHHHHhH
Confidence 344566666666666665544332111 000 1234667777777777763 4455555667777888898888888
Q ss_pred hHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028586 98 PCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI 137 (207)
Q Consensus 98 P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll 137 (207)
-..|.+++++++.++++... .-|..+.+.|+++=
T Consensus 297 KavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln 330 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLN 330 (367)
T ss_pred hHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhh
Confidence 88999999999999987642 44666777888764
No 85
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=66.02 E-value=21 Score=28.40 Aligned_cols=97 Identities=9% Similarity=-0.069 Sum_probs=59.6
Q ss_pred HHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCC---------CCCCCCCccCCCCCC
Q 028586 90 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAV---------PSLKGAPIHLGTNSV 160 (207)
Q Consensus 90 a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~---------~~~~~~~~~~~~~~~ 160 (207)
.....+..|+++++....+.+|+.+. .|+++.++...|++.-...+.+.. ...+.++.++ ....
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~-~~~~ 79 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSA-KTLM 79 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCc-cccc
Confidence 34456788888999999888888862 479999999999864321111000 0000000000 0001
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
..+...|..+.+.++++-+.-.+++++..|+++
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~ 112 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD 112 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence 123457888888888888888999999887764
No 86
>PRK02237 hypothetical protein; Provisional
Probab=65.22 E-value=49 Score=23.82 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 96 TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 96 ~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
..-+...+..+...++|++ +.-++|..+|++|+.++.
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd------~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPD------RWDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHHHHHHHhcCcCCC------hhHHHhHHHHHHhHHHhe
Confidence 4444555667777777765 457999999999998764
No 87
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=54.99 E-value=1.2e+02 Score=24.92 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH-HHhhccCC------CCCHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAY-FLERKIRP------KLTLAVFLEIFLLSLLGVSLA 74 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~-~~~~~~~~------~~~~~~~~~~~~~gl~g~~~~ 74 (207)
+.++++-|...+.....+.++-.|+..--.+..+-+++...+.. ..++.... ..+...|.-.+..++-|
T Consensus 120 l~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gG---- 195 (244)
T PF04142_consen 120 LAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGG---- 195 (244)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhh----
Confidence 34567788888888888865434444433333333333332222 22211111 11222333233333333
Q ss_pred HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccc
Q 028586 75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDV 115 (207)
Q Consensus 75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~ 115 (207)
...-.-++|.+...=+.-....-+++.+++.++++.+++.
T Consensus 196 -llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 196 -LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 2333568888887777777788888889999999998875
No 88
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.48 E-value=21 Score=27.06 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=31.4
Q ss_pred HhhccChhhHHHhhccchHHHHHHHHHh-----hhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVF-----RLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 81 gl~~t~a~~a~il~~~~P~~~~ila~~~-----~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
|+.--+.-.++.+.|+.|+++++++.++ +.|.+ .++|.+++.++.+++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~---------~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELI---------VIFGAFLGLALGFLLA 121 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHHHHHHHHH
Confidence 4455566678999999999998887655 34433 2455555555555443
No 89
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=52.57 E-value=1.9e+02 Score=26.50 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=26.0
Q ss_pred HHHhhccchHHHHHHHHHh--hhccccc-cCCCCchhhhhHHHHHHhHHH
Q 028586 90 MTAVVNTIPCMTFIIAVVF--RLEIVDV-RSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 90 a~il~~~~P~~~~ila~~~--~~e~~~~-~~~~~~~~~~G~~l~~~Gv~l 136 (207)
++.++++.|+++++++-++ +-.+... ++.|+..+-.++.+.+.|+.+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 6788999999999877542 2122221 122333444555555555543
No 90
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=51.32 E-value=89 Score=22.43 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=19.5
Q ss_pred HHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028586 102 FIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV 136 (207)
Q Consensus 102 ~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l 136 (207)
...+.+++||+++++. ..|.++.+.++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~------l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNY------LWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHH------HHHHHHHHHhhhe
Confidence 4557788999998753 6666665555544
No 91
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=50.46 E-value=17 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=28.3
Q ss_pred cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 96 TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 96 ~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
..-+...+..+...+++++ +.-++|..+|++|+.++.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd------~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPD------RWDWIGAAICLVGVAIIL 102 (107)
T ss_pred hHHHHHHHHHhhhcCcCCC------hHHHHhHHHHHHhHHheE
Confidence 4455666677777777765 457999999999998775
No 92
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=49.91 E-value=30 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 164 WLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 164 ~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
..+|-++.=.=.+.|++|++++|.+-++.+
T Consensus 104 ~~LgwIL~gVf~lIWslY~~~~~~l~eded 133 (138)
T PF07123_consen 104 NLLGWILLGVFGLIWSLYFVYTSTLDEDED 133 (138)
T ss_pred chhHHHHHHHHHHHHHHHHhhccccCCCcc
Confidence 357888888889999999999999775554
No 93
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=44.57 E-value=52 Score=20.49 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=31.3
Q ss_pred hhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 028586 123 KILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPST 191 (207)
Q Consensus 123 ~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~ 191 (207)
.++|..+.++|++.+.. +|+ |.+..+++-..+|.+.-..|+..++
T Consensus 5 ~v~G~~lv~~Gii~~~l-PGp-----------------------G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PGP-----------------------GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CCC-----------------------cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 47899999999987652 221 5566667777777777777776543
No 94
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=44.47 E-value=37 Score=28.03 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=63.5
Q ss_pred HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCC
Q 028586 79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN 158 (207)
Q Consensus 79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~ 158 (207)
--+++|.+...=+++-++.-+.++..-..+++.|++. .+....++.+..-+.-.. |+.. ..+
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vts------l~l~SFilMvlSS~va~w--~D~q----------~~~ 147 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTS------LELLSFILMVLSSVVATW--GDQQ----------ASA 147 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccch------hhHHHHHHHHHHHHHhcc--chhh----------HHH
Confidence 3578899999999999988888888888888888754 345555555555443221 1100 000
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028586 159 SVHENWLKGSILTVASCILWSSFYIMQVSNPS 190 (207)
Q Consensus 159 ~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~ 190 (207)
......+.|-+|+...+++-++|.+.-|+-.|
T Consensus 148 ~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ 179 (309)
T COG5070 148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIK 179 (309)
T ss_pred HHhcccCCceEEEehhhHhHHHHHHHHHHhhc
Confidence 01112356999999999999999999888655
No 95
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=43.54 E-value=34 Score=19.52 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028586 166 KGSILTVASCILWSSFYIMQ 185 (207)
Q Consensus 166 ~G~ll~l~aa~~~a~y~v~~ 185 (207)
+=+++=++.|.+|++|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34566788999999999863
No 96
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=43.20 E-value=35 Score=29.02 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhccChhhHHHhh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 63 IFLLSLLGVSLA-LNLYFASMKYVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 63 ~~~~gl~g~~~~-~~~~~~gl~~t~a~~a~il~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
.+++.+...... ....+.|+++-+++...-+. ...-.++.+-+.++++|--+...+--..-..|..+.+.|+.+++
T Consensus 214 ~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 214 LLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 444444444444 44567799988877654333 35555666677888888544321111123457888888988876
No 97
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=39.25 E-value=50 Score=18.85 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028586 166 KGSILTVASCILWSSFYIMQV 186 (207)
Q Consensus 166 ~G~ll~l~aa~~~a~y~v~~k 186 (207)
+=++.-++.|.+|++|++..-
T Consensus 6 liVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 345666788999999999743
No 98
>PRK11056 hypothetical protein; Provisional
Probab=35.71 E-value=1.7e+02 Score=21.41 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhH
Q 028586 55 LTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGV 134 (207)
Q Consensus 55 ~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv 134 (207)
.+++.+..-++.|+.+...+..++.. -+=.+..|+++.+++.-.+.++=-.+..+.-.-.++..+-++|+
T Consensus 7 ~ek~tLlLaliaGl~~ng~fs~Lf~s----------~VpFSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~ 76 (120)
T PRK11056 7 QEKGTLLLALIAGLSINGTFAALFSS----------IVPFSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGV 76 (120)
T ss_pred cchhhHHHHHHHHHhhchhhHHHHcc----------ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 34565655566666655443332221 11235789999999977755443222222223355677777887
Q ss_pred HH
Q 028586 135 MV 136 (207)
Q Consensus 135 ~l 136 (207)
..
T Consensus 77 f~ 78 (120)
T PRK11056 77 FL 78 (120)
T ss_pred HH
Confidence 64
No 99
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=35.63 E-value=42 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Q 028586 165 LKGSILTVASCILWSSFYIMQVSNPS 190 (207)
Q Consensus 165 ~~G~ll~l~aa~~~a~y~v~~k~~~~ 190 (207)
.+|-++.-.-++.|++|.+.++.+-+
T Consensus 33 ~LgwIL~gvf~liw~ly~~~~~~l~~ 58 (67)
T PLN00082 33 KLTWILVGVTALIWALYFSYSSTLPE 58 (67)
T ss_pred hhhhHHHHHHHHHHHHHhheecccCC
Confidence 57888888889999999998777655
No 100
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=34.86 E-value=1.8e+02 Score=21.21 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhH
Q 028586 55 LTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGV 134 (207)
Q Consensus 55 ~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv 134 (207)
.++|.+..-++.|+.+......++..-+ =.+..|+++.+++.-.+.++=-.+..+.-.-.++..+-++|+
T Consensus 7 ~ek~tLlLaliaGl~~n~~~s~L~~s~V----------pFSiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~ 76 (117)
T PF07226_consen 7 SEKKTLLLALIAGLCGNATFSALFSSEV----------PFSIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGL 76 (117)
T ss_pred CchhhHHHHHHHHHhccchhHHHHhccc----------ccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 3456666666667666544333222111 235789999999876654432222222223356777777887
Q ss_pred HH
Q 028586 135 MV 136 (207)
Q Consensus 135 ~l 136 (207)
..
T Consensus 77 f~ 78 (117)
T PF07226_consen 77 FG 78 (117)
T ss_pred HH
Confidence 64
No 101
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=33.57 E-value=1.1e+02 Score=23.88 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028586 129 ASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPS 190 (207)
Q Consensus 129 l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~ 190 (207)
+++.|+.+++...+ .++.--....+.+++.+++-.++-....+
T Consensus 114 CaVLgvaLln~~~~-------------------~~f~qsv~~gf~a~lGfslvmvlfA~iRE 156 (193)
T COG4657 114 CAVLGVALLNINEG-------------------HNFLQSVVYGFGAALGFSLVMVLFAAIRE 156 (193)
T ss_pred hHHHHHHHHHhhhh-------------------hhHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 67889988874322 23344566678888888887776554443
No 102
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=33.08 E-value=61 Score=23.70 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 028586 164 WLKGSILTVASCILWSSFYIMQVSNPSTS 192 (207)
Q Consensus 164 ~~~G~ll~l~aa~~~a~y~v~~k~~~~~~ 192 (207)
..+|-++.=.=++.|++|++.+|.+-++.
T Consensus 93 ~~LgwIL~gVf~liw~ly~~~~~~l~~~e 121 (128)
T PLN00077 93 NLLGWILLGVFGLIWSLYTTYTSDLPEDE 121 (128)
T ss_pred chhhHHHHhHHHHHHHHHhheecccCCcc
Confidence 35788888888999999999999985533
No 103
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=32.58 E-value=61 Score=18.97 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028586 167 GSILTVASCILWSSFYIM 184 (207)
Q Consensus 167 G~ll~l~aa~~~a~y~v~ 184 (207)
=++.=++.+.+|++|++.
T Consensus 7 iVl~Pil~A~~Wa~fNIg 24 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIG 24 (40)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456668899999999985
No 104
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=30.87 E-value=36 Score=28.95 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhccChhhHHH----hhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 68 LLGVSLALNLYFASMKYVHPTFMTA----VVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 68 l~g~~~~~~~~~~gl~~t~a~~a~i----l~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
+++.++.|.....|+...++-.+++ ...+=-.+..+++.+.++.++++ ..|+|..+.+.|.++-+
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~------~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP------WHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH------HHHHHHHHHHHHHHHHH
Confidence 4556777877777877666655554 34455677788888889988875 45999999999987754
No 105
>COG2246 Predicted membrane protein [Function unknown]
Probab=29.38 E-value=2.4e+02 Score=20.98 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccChhhHHHhhccchHHHHHHHHHhhhccccccCC
Q 028586 56 TLAVFLEIFLLSLLGVSLALNLYFASMK--YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSP 118 (207)
Q Consensus 56 ~~~~~~~~~~~gl~g~~~~~~~~~~gl~--~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~ 118 (207)
..+.+.++...|.+++..+...++.-.+ ..+...|.+.-...- ++..++.+++.+.+.+
T Consensus 9 ~~~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~~~~----ii~sf~~N~~wTF~~~ 69 (139)
T COG2246 9 TLSRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAYEAA----IIFSFVLNRRWTFRDR 69 (139)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH----HHHHHHHHceeeEeec
Confidence 4567788999999999888877776666 355555555444222 2333445555555543
No 106
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=28.56 E-value=69 Score=24.40 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=19.3
Q ss_pred hhccChhhHHHhhccchHHHHHHHHHh
Q 028586 82 MKYVHPTFMTAVVNTIPCMTFIIAVVF 108 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P~~~~ila~~~ 108 (207)
+..-+.-+++.+.|+.|++.++.+..+
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445568889999999988776544
No 107
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=28.45 E-value=2.2e+02 Score=21.31 Aligned_cols=28 Identities=7% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 028586 165 LKGSILTVASCILWSSFYIMQVSNPSTS 192 (207)
Q Consensus 165 ~~G~ll~l~aa~~~a~y~v~~k~~~~~~ 192 (207)
....+..+.++..|--|...+||..+.+
T Consensus 120 i~~l~~~li~a~IwipYf~~S~RVK~TF 147 (149)
T PF10754_consen 120 IRELLRSLIAAAIWIPYFLRSKRVKNTF 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 4677888999999999999998876654
No 108
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=25.75 E-value=72 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028586 164 WLKGSILTVASCILWSSFYIMQVSNPSTSF 193 (207)
Q Consensus 164 ~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~ 193 (207)
..+|-++.=.=++.|++|.+.++.+-++.+
T Consensus 103 ~~LgwIL~gVf~lIWslYf~~~~~l~edeD 132 (137)
T PLN00092 103 NLLGWILLGVFGLIWSLYFVYTSTLEEDEE 132 (137)
T ss_pred cchhhHHHhHHHHHHHHHheeecccCcccc
Confidence 357888888889999999999987665544
No 109
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.31 E-value=1.5e+02 Score=21.15 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHh
Q 028586 68 LLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVF 108 (207)
Q Consensus 68 l~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~ 108 (207)
++|..+|..+...|+.-.+|++++-..-..-++.-+.++++
T Consensus 15 ~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlf 55 (104)
T PF11460_consen 15 LLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLF 55 (104)
T ss_pred HHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHh
Confidence 45677888888999998888887755444444555555655
No 110
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=24.83 E-value=4.1e+02 Score=22.11 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028586 2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS 81 (207)
Q Consensus 2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g 81 (207)
+++.+++|++++-.|.. +. -|++.+-++-... +.+.-+.....+. .++.. .+-.+-|.+- +..+.+-.-.
T Consensus 6 ~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~--i~~~g~~v~~~~~-~p~f~----p~amlgG~lW-~~gN~~~vpi 75 (254)
T PF07857_consen 6 IVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSG--IFLVGLVVNLILG-FPPFY----PWAMLGGALW-ATGNILVVPI 75 (254)
T ss_pred HHHHHHhcccceeeEec-cC-CCcHHHHHHHHHH--HHHHHHHHHHhcC-CCcce----eHHHhhhhhh-hcCceeehhH
Confidence 56789999999999975 33 5776555443322 2222222111121 22221 1222233332 2234444455
Q ss_pred hhccChhhHHHhhccch-HHHHHHHHH-hhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCC--------CCCC
Q 028586 82 MKYVHPTFMTAVVNTIP-CMTFIIAVV-FRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPS--------LKGA 151 (207)
Q Consensus 82 l~~t~a~~a~il~~~~P-~~~~ila~~-~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~--------~~~~ 151 (207)
++..+=+.+-.+=+..= +.--..+++ +++++.+.-. ......+|++++++|..+...-+.+.... ...+
T Consensus 76 i~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~ 154 (254)
T PF07857_consen 76 IKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIE 154 (254)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccc
Confidence 66655555554444322 222233333 3333322111 14567889999999987665433222110 0000
Q ss_pred -Cc---cC-----CCCC-----CCcchHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 028586 152 -PI---HL-----GTNS-----VHENWLKGSILTVASCILWSSFYIMQVSNPSTS 192 (207)
Q Consensus 152 -~~---~~-----~~~~-----~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~ 192 (207)
.+ .+ +.+. ...+...|.++.+.+.+.|+...+=.+-..++.
T Consensus 155 ~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 155 DVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00 00 0010 011346899999999999998877555444443
No 111
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=24.49 E-value=4.9e+02 Score=23.26 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC------------------------------hhhHHHhh-ccchHHHHHHHHHhhh
Q 028586 62 EIFLLSLLGVSLALNLYFASMKYVH------------------------------PTFMTAVV-NTIPCMTFIIAVVFRL 110 (207)
Q Consensus 62 ~~~~~gl~g~~~~~~~~~~gl~~t~------------------------------a~~a~il~-~~~P~~~~ila~~~~~ 110 (207)
.+.++|++....|-...-.|..-.+ -++++++. ...|-+.+=+..-++-
T Consensus 4 ~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi 83 (402)
T PF02487_consen 4 AFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFI 83 (402)
T ss_pred HHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhh
Confidence 3456677766666655555554444 22333444 4677776544333333
Q ss_pred ccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028586 111 EIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 111 e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
+|++. ..|-+...++..+|.++++.
T Consensus 84 ~~v~y----~~Ri~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 84 HRVPY----WIRILICVALSAAGMLLVAF 108 (402)
T ss_pred hhccc----hHHHHHHHHHHHHHHhheee
Confidence 35543 23567788888888887763
No 112
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=23.16 E-value=90 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.172 Sum_probs=18.7
Q ss_pred ccChhhHHHhhccchHHHHHHHHHh
Q 028586 84 YVHPTFMTAVVNTIPCMTFIIAVVF 108 (207)
Q Consensus 84 ~t~a~~a~il~~~~P~~~~ila~~~ 108 (207)
..+...++.+.+..|++.++++.++
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345568889999999988877654
No 113
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=55 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028586 98 PCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA 138 (207)
Q Consensus 98 P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~ 138 (207)
-....+..++..+.++ ++.-++|..+|++|+.++.
T Consensus 69 I~~sL~W~~~Vdg~~p------dr~D~~Ga~icl~G~~vil 103 (109)
T COG1742 69 IAASLAWLWVVDGVRP------DRYDWIGAAICLAGVAVIL 103 (109)
T ss_pred HHHHHHHHHHHcCcCC------cHHHhhhHHHHHhceeeeE
Confidence 3344445555555555 4567999999999987765
No 114
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=21.69 E-value=3.4e+02 Score=23.52 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=18.7
Q ss_pred ChhhHHHHHHHHHHHHHHHhC
Q 028586 1 MILLQICVASVYFLTEDSFNQ 21 (207)
Q Consensus 1 ~~~~~~~wg~~~i~~K~~l~~ 21 (207)
|+++.+|||+.....|.+-+.
T Consensus 1 M~itmlcwGSW~nt~kL~~r~ 21 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERR 21 (336)
T ss_pred CeeehhhhcChHHHHHHHHhc
Confidence 889999999999999988654
No 115
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.02 E-value=4.2e+02 Score=20.89 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 028586 167 GSILTVASCILWSSFYIMQVSN 188 (207)
Q Consensus 167 G~ll~l~aa~~~a~y~v~~k~~ 188 (207)
+....++++++++++..+.||+
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566688999999998886654
Done!