Query 028586
Match_columns 207
No_of_seqs 173 out of 1270
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 23:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028586.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028586hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 19.3 47 0.0034 15.2 2.9 20 165-184 2-21 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 4.8 2.4E+02 0.017 13.8 2.9 20 163-182 16-35 (37)
3 d1q90r_ f.23.12.1 (R:) ISP sub 4.6 2.6E+02 0.019 14.1 3.5 17 55-71 7-23 (39)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 4.4 2.2E+02 0.016 13.0 1.9 8 106-113 20-27 (30)
5 d1rh5b_ f.23.28.1 (B:) Preprot 4.1 3.4E+02 0.025 14.7 4.4 10 54-63 17-26 (56)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 3.0 3.7E+02 0.027 13.1 2.0 15 94-108 16-30 (37)
7 d2h8pc1 f.14.1.1 (C:22-78) Pot 2.7 2.9E+02 0.021 14.9 1.3 10 192-201 38-47 (57)
8 d1gl4a1 d.22.1.2 (A:399-631) D 2.6 1.9E+02 0.014 20.7 0.5 36 80-116 43-78 (233)
9 d1v54m_ f.23.7.1 (M:) Mitochon 2.5 3E+02 0.022 14.1 1.1 14 123-136 15-28 (43)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.2 5.3E+02 0.039 13.1 2.4 19 31-49 11-29 (46)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.31 E-value=47 Score=15.24 Aligned_cols=20 Identities=5% Similarity=0.326 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028586 165 LKGSILTVASCILWSSFYIM 184 (207)
Q Consensus 165 ~~G~ll~l~aa~~~a~y~v~ 184 (207)
.+|.+..-++.+.|+.|--+
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 46888888889999988543
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.80 E-value=2.4e+02 Score=13.82 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 028586 163 NWLKGSILTVASCILWSSFY 182 (207)
Q Consensus 163 ~~~~G~ll~l~aa~~~a~y~ 182 (207)
+.-+|.++.+.-++-++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34589999999888888875
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.63 E-value=2.6e+02 Score=14.05 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028586 55 LTLAVFLEIFLLSLLGV 71 (207)
Q Consensus 55 ~~~~~~~~~~~~gl~g~ 71 (207)
..+|++..++.+|-...
T Consensus 7 MgrR~~MNLll~G~~~~ 23 (39)
T d1q90r_ 7 MNKRNIMNLILAGGAGL 23 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccch
Confidence 45677777777765543
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.44 E-value=2.2e+02 Score=13.01 Aligned_cols=8 Identities=25% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHhhhccc
Q 028586 106 VVFRLEIV 113 (207)
Q Consensus 106 ~~~~~e~~ 113 (207)
.++++|++
T Consensus 20 aiffrepp 27 (30)
T d2axtt1 20 AIFFREPP 27 (30)
T ss_dssp HHHTSCCC
T ss_pred HHHhcCCC
Confidence 34567765
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.07 E-value=3.4e+02 Score=14.69 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=5.5
Q ss_pred CCCHHHHHHH
Q 028586 54 KLTLAVFLEI 63 (207)
Q Consensus 54 ~~~~~~~~~~ 63 (207)
+.+++++...
T Consensus 17 KP~~~Ef~~i 26 (56)
T d1rh5b_ 17 KPTKDEYLAV 26 (56)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3466666543
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.98 E-value=3.7e+02 Score=13.12 Aligned_cols=15 Identities=27% Similarity=0.591 Sum_probs=10.3
Q ss_pred hccchHHHHHHHHHh
Q 028586 94 VNTIPCMTFIIAVVF 108 (207)
Q Consensus 94 ~~~~P~~~~ila~~~ 108 (207)
+..+|++-.+++...
T Consensus 16 lPiIPv~f~lLafVW 30 (37)
T d2axtk1 16 LPVIPVLFLALAFVW 30 (37)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 457788777776654
No 7
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.70 E-value=2.9e+02 Score=14.88 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=3.8
Q ss_pred cCCceeeeee
Q 028586 192 SFRFFSFEWY 201 (207)
Q Consensus 192 ~~~~~~~~~~ 201 (207)
++..+...|+
T Consensus 38 f~sip~a~WW 47 (57)
T d2h8pc1 38 LITYPRALWW 47 (57)
T ss_dssp CCSHHHHHHH
T ss_pred ccccchhhhh
Confidence 3333333333
No 8
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.58 E-value=1.9e+02 Score=20.73 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHhhccChhhHHHhhccchHHHHHHHHHhhhcccccc
Q 028586 80 ASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVR 116 (207)
Q Consensus 80 ~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~ 116 (207)
.+++.+++..+..+..+.|+.. .++|+|=||.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 4678889999999999999875 56899988876543
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.53 E-value=3e+02 Score=14.12 Aligned_cols=14 Identities=7% Similarity=0.411 Sum_probs=9.7
Q ss_pred hhhhHHHHHHhHHH
Q 028586 123 KILGTLASLVGVMV 136 (207)
Q Consensus 123 ~~~G~~l~~~Gv~l 136 (207)
+.+|+..++++...
T Consensus 15 ~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 15 QAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777777654
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.18 E-value=5.3e+02 Score=13.12 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028586 31 YRHAAGSLMMFPFAYFLER 49 (207)
Q Consensus 31 ~R~~~a~~~l~~~~~~~~~ 49 (207)
++.++...++..++++..|
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
Done!