Query 028588
Match_columns 207
No_of_seqs 138 out of 1050
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 23:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nio_A Guanidinobutyrase; PA14 100.0 3.3E-53 1.1E-57 361.1 22.6 203 2-207 106-315 (319)
2 1gq6_A Proclavaminate amidino 100.0 7.4E-53 2.5E-57 358.4 18.7 202 2-206 98-306 (313)
3 1woh_A Agmatinase; alpha/beta 100.0 1.4E-52 4.8E-57 355.5 19.1 198 2-206 98-301 (305)
4 3niq_A 3-guanidinopropionase; 100.0 1.9E-52 6.6E-57 357.2 19.8 201 2-206 103-311 (326)
5 4g3h_A Arginase (ROCF); rossma 100.0 6E-52 2.1E-56 354.5 22.2 202 2-206 68-310 (330)
6 3lhl_A Putative agmatinase; pr 100.0 1E-51 3.4E-56 347.4 22.3 197 2-206 75-275 (287)
7 3m1r_A Formimidoylglutamase; s 100.0 1.3E-51 4.4E-56 351.8 23.0 200 2-205 105-316 (322)
8 3pzl_A Agmatine ureohydrolase; 100.0 3.1E-52 1.1E-56 353.8 16.2 197 2-207 101-299 (313)
9 2a0m_A Arginase superfamily pr 100.0 3.2E-51 1.1E-55 348.6 21.8 201 2-207 99-308 (316)
10 4dz4_A Agmatinase; hydrolase; 100.0 1.1E-51 3.6E-56 352.4 18.8 197 2-206 116-317 (324)
11 1xfk_A Formimidoylglutamase; f 100.0 6.6E-51 2.3E-55 349.4 23.5 203 2-207 105-328 (336)
12 2cev_A Protein (arginase); enz 100.0 4.8E-51 1.6E-55 345.3 20.3 199 2-203 76-295 (299)
13 2ef5_A Arginase; TTHA1496, str 100.0 7.5E-51 2.6E-55 342.8 20.3 197 2-203 74-286 (290)
14 1pq3_A Arginase II, mitochondr 100.0 2.2E-50 7.6E-55 342.2 18.8 200 2-204 74-302 (306)
15 2aeb_A Arginase 1; hydrolase, 100.0 3.6E-50 1.2E-54 343.1 19.2 201 2-205 78-307 (322)
16 3sl1_A Arginase; metallohydrol 100.0 2.7E-49 9.4E-54 342.8 21.6 200 2-203 172-409 (413)
17 2jwk_A Protein TOLR; periplasm 53.4 12 0.00042 23.2 3.2 37 2-38 30-66 (74)
18 7odc_A Protein (ornithine deca 51.3 1.1E+02 0.0038 25.9 10.6 99 69-176 94-196 (424)
19 2z84_A UFSP1, UFM1-specific pr 49.6 2.5 8.5E-05 33.3 -0.8 46 5-54 126-174 (218)
20 2qgh_A Diaminopimelate decarbo 45.3 1.4E+02 0.0047 25.2 12.7 95 80-176 103-204 (425)
21 1poi_A Glutaconate coenzyme A- 44.2 96 0.0033 25.4 8.0 88 3-107 5-99 (317)
22 3vab_A Diaminopimelate decarbo 41.9 1.6E+02 0.0056 25.0 11.6 106 70-177 108-221 (443)
23 1k8k_G P16, ARP2/3 complex 16 41.8 10 0.00036 28.0 1.5 74 131-205 11-86 (151)
24 3pv9_D Putative uncharacterize 41.6 22 0.00075 29.4 3.7 33 19-54 39-71 (322)
25 3lfx_A Uncharacterized protein 41.2 19 0.00064 29.7 3.2 32 19-53 37-68 (319)
26 3god_A CAS1; crispr, metallonu 40.6 23 0.00079 29.4 3.7 32 19-53 61-92 (328)
27 2yzs_A Putative uncharacterize 38.7 23 0.00079 29.1 3.4 32 19-53 37-68 (315)
28 3nkd_A Crispr-associated prote 38.1 24 0.00081 29.0 3.3 33 19-54 51-83 (305)
29 3gyb_A Transcriptional regulat 36.5 68 0.0023 24.6 5.8 45 6-50 165-212 (280)
30 3dwl_G Actin-related protein 2 36.1 10 0.00035 28.1 0.7 74 131-205 3-87 (152)
31 3qk7_A Transcriptional regulat 35.4 65 0.0022 25.1 5.6 48 5-52 175-225 (294)
32 1ycy_A Conserved hypothetical 34.6 21 0.00073 22.2 1.9 14 16-29 17-30 (71)
33 3ksm_A ABC-type sugar transpor 33.8 82 0.0028 23.8 5.8 21 70-90 203-223 (276)
34 2oo0_A ODC, ornithine decarbox 33.6 2.3E+02 0.0079 24.3 13.4 92 80-180 116-210 (471)
35 2fiq_A Putative tagatose 6-pho 33.4 32 0.0011 29.7 3.5 47 3-53 63-127 (420)
36 3dbi_A Sugar-binding transcrip 33.3 75 0.0026 25.3 5.7 47 5-51 230-279 (338)
37 1lgy_A Lipase, triacylglycerol 32.2 81 0.0028 24.9 5.6 33 3-36 122-156 (269)
38 3k9c_A Transcriptional regulat 32.1 74 0.0025 24.6 5.4 44 7-50 175-221 (289)
39 3h5t_A Transcriptional regulat 31.6 77 0.0026 25.6 5.6 13 79-91 295-307 (366)
40 2o0t_A Diaminopimelate decarbo 31.5 2.2E+02 0.0075 24.3 8.7 96 80-177 111-215 (467)
41 3g85_A Transcriptional regulat 31.3 70 0.0024 24.6 5.1 10 79-88 215-224 (289)
42 3btn_A Antizyme inhibitor 1; T 30.8 2.5E+02 0.0085 23.9 11.0 103 69-180 94-200 (448)
43 3k4h_A Putative transcriptiona 30.7 83 0.0028 24.2 5.4 11 79-89 219-229 (292)
44 2h0a_A TTHA0807, transcription 30.6 1E+02 0.0035 23.4 5.9 23 70-92 196-220 (276)
45 2dri_A D-ribose-binding protei 30.5 96 0.0033 23.6 5.8 11 80-90 207-217 (271)
46 3o74_A Fructose transport syst 30.0 56 0.0019 24.8 4.2 30 22-51 185-216 (272)
47 3egc_A Putative ribose operon 29.1 88 0.003 24.1 5.3 45 7-51 176-223 (291)
48 1tif_A IF3-N, translation init 29.0 22 0.00076 23.1 1.4 28 153-185 27-54 (78)
49 3txv_A Probable tagatose 6-pho 28.6 55 0.0019 28.5 4.1 49 3-55 70-136 (450)
50 3gbv_A Putative LACI-family tr 28.5 1.1E+02 0.0039 23.4 5.9 33 69-104 214-246 (304)
51 3gv0_A Transcriptional regulat 28.3 75 0.0026 24.5 4.8 13 79-91 215-227 (288)
52 3bil_A Probable LACI-family tr 28.2 1E+02 0.0035 24.8 5.7 43 7-51 233-278 (348)
53 3kke_A LACI family transcripti 28.1 87 0.003 24.4 5.2 12 79-90 224-235 (303)
54 1xfc_A Alanine racemase; alpha 27.8 2.5E+02 0.0087 23.0 11.3 90 71-176 74-171 (384)
55 3jvd_A Transcriptional regulat 27.7 1E+02 0.0035 24.5 5.6 48 5-53 220-270 (333)
56 3dcm_X AdoMet, uncharacterized 27.1 1.1E+02 0.0036 23.4 5.1 33 3-35 90-127 (192)
57 2iks_A DNA-binding transcripti 27.0 1E+02 0.0034 23.8 5.3 11 79-89 224-234 (293)
58 1uwc_A Feruloyl esterase A; hy 27.0 1.3E+02 0.0043 23.6 5.9 47 3-50 110-159 (261)
59 2bni_A General control protein 26.5 41 0.0014 18.1 1.9 14 1-14 3-16 (34)
60 4hd5_A Polysaccharide deacetyl 26.4 66 0.0023 27.1 4.2 63 94-165 173-255 (360)
61 3l6u_A ABC-type sugar transpor 26.4 1.2E+02 0.0042 23.2 5.7 10 81-90 221-230 (293)
62 3e3m_A Transcriptional regulat 26.3 80 0.0027 25.4 4.7 12 79-90 277-288 (355)
63 3hcw_A Maltose operon transcri 26.3 1E+02 0.0035 23.9 5.3 11 79-89 219-229 (295)
64 2rgy_A Transcriptional regulat 26.2 1.2E+02 0.0039 23.5 5.5 10 80-89 217-226 (290)
65 2pfu_A Biopolymer transport EX 26.2 61 0.0021 21.1 3.3 38 2-39 42-79 (99)
66 3d8u_A PURR transcriptional re 25.9 1E+02 0.0035 23.4 5.1 12 79-90 208-219 (275)
67 1uo4_A General control protein 25.8 43 0.0015 18.0 1.9 14 1-14 3-16 (34)
68 3h5o_A Transcriptional regulat 25.7 81 0.0028 25.1 4.6 46 6-51 228-276 (339)
69 2h3h_A Sugar ABC transporter, 25.6 1.5E+02 0.0052 23.0 6.2 20 71-90 199-218 (313)
70 2hy6_A General control protein 25.5 44 0.0015 18.0 1.9 14 1-14 3-16 (34)
71 2ioy_A Periplasmic sugar-bindi 25.1 1.3E+02 0.0044 23.0 5.6 17 73-90 202-218 (283)
72 3l49_A ABC sugar (ribose) tran 24.9 1.3E+02 0.0045 22.9 5.6 8 81-88 217-224 (291)
73 3bbl_A Regulatory protein of L 24.7 1.3E+02 0.0045 23.1 5.6 10 80-89 216-225 (287)
74 3kjx_A Transcriptional regulat 24.4 87 0.003 25.0 4.6 12 79-90 274-285 (344)
75 3h75_A Periplasmic sugar-bindi 24.3 1.5E+02 0.005 23.6 5.9 48 5-52 193-243 (350)
76 3rot_A ABC sugar transporter, 24.0 93 0.0032 24.1 4.6 7 81-87 218-224 (297)
77 3hs3_A Ribose operon repressor 24.0 78 0.0027 24.3 4.1 47 6-52 167-216 (277)
78 8abp_A L-arabinose-binding pro 23.9 1.4E+02 0.0049 22.9 5.7 49 5-53 183-235 (306)
79 3tb6_A Arabinose metabolism tr 23.9 1.1E+02 0.0037 23.4 4.9 10 80-89 229-238 (298)
80 1qpz_A PURA, protein (purine n 23.7 1.2E+02 0.0042 24.0 5.4 10 80-89 266-275 (340)
81 3brq_A HTH-type transcriptiona 23.4 1.3E+02 0.0046 22.9 5.4 12 79-90 227-238 (296)
82 3mqt_A Mandelate racemase/muco 23.2 3.2E+02 0.011 22.7 8.3 58 96-169 161-226 (394)
83 2x7x_A Sensor protein; transfe 23.1 1.6E+02 0.0056 23.1 6.0 13 77-89 211-223 (325)
84 1gud_A ALBP, D-allose-binding 23.0 1.5E+02 0.005 22.9 5.6 22 69-90 208-229 (288)
85 3exa_A TRNA delta(2)-isopenten 22.8 50 0.0017 27.4 2.7 31 4-35 81-111 (322)
86 2vk2_A YTFQ, ABC transporter p 22.1 1.6E+02 0.0054 22.8 5.6 11 28-38 202-212 (306)
87 2fep_A Catabolite control prot 22.0 1.3E+02 0.0044 23.2 5.1 11 79-89 222-232 (289)
88 1knw_A Diaminopimelate decarbo 21.9 3.5E+02 0.012 22.6 10.6 91 80-177 95-191 (425)
89 1tjy_A Sugar transport protein 21.7 1.9E+02 0.0065 22.7 6.1 29 70-100 205-233 (316)
90 1dbq_A Purine repressor; trans 21.6 1.5E+02 0.0052 22.5 5.4 12 79-90 214-225 (289)
91 3jva_A Dipeptide epimerase; en 21.2 2.4E+02 0.0081 23.1 6.7 92 66-178 114-215 (354)
92 3c3g_A Alpha/beta peptide with 20.6 42 0.0014 17.9 1.2 14 1-14 2-15 (33)
93 3brs_A Periplasmic binding pro 20.3 2.1E+02 0.0072 21.7 6.0 27 27-53 200-227 (289)
94 2dy3_A Alanine racemase; alpha 20.1 3.5E+02 0.012 21.9 12.4 81 70-168 65-145 (361)
95 2rdx_A Mandelate racemase/muco 20.1 3.6E+02 0.012 22.1 8.4 60 96-171 154-217 (379)
96 3m48_A General control protein 20.0 57 0.0019 17.5 1.6 14 1-14 2-15 (33)
No 1
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=100.00 E-value=3.3e-53 Score=361.15 Aligned_cols=203 Identities=31% Similarity=0.575 Sum_probs=182.0
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCC--C
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--A 79 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~--~ 79 (207)
+++++.++.++++ +.+||+||||||+|+|.++|+++++ ++++|||||||+|+++++.|+.++||||++++++++. +
T Consensus 106 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~al~~~~-~~l~vI~~DAH~Dl~~~~~g~~~~hG~~~~~~~~~~~~~~ 183 (319)
T 3nio_A 106 RIIEQEYDRILGH-GILPLTLGGDHTITLPILRAIXKXH-GXVGLVHVDAHADVNDHMFGEXIAHGTTFRRAVEEDLLDC 183 (319)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECCCGGGHHHHHHHHHHHH-CSEEEEEECSSCCCCSCBTTBSCSTTTHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHC-CCEEEEECCcchhhHHHHHHHHhhc-CceEEEEEecCcccCCCCCccccccccHHHHHhhccCCCC
Confidence 5789999999996 7999999999999999999999887 5899999999999999888888999999999999864 4
Q ss_pred CcEEEEcccC--CChhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCC
Q 028588 80 RRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGL 155 (207)
Q Consensus 80 ~~vv~iG~r~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl 155 (207)
++++++|+|+ .+++|++++++.|+++++++++... ..+++++....+.+++|||||+|||||+++|||++|+||||
T Consensus 184 ~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGl 263 (319)
T 3nio_A 184 DRVVQIGLRAQGYTAEDFNWSRXQGFRVVQAEECWHXSLEPLMAEVREXVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGL 263 (319)
T ss_dssp EEEEEEEECSEESSTHHHHHHHHHTCEEEEGGGTTTCCSHHHHHHHHHHHCSSEEEEEEEGGGBCTTTCCCBSSCCSSCB
T ss_pred CcEEEEEeCCCCCCHHHHHHHHhcCcEEEEHHHhhhcCHHHHHHHHHHhcCCCcEEEEEecCccChhhCCCCCCCCCCCC
Confidence 7999999998 5889999999999999999998753 44555543222357999999999999999999999999999
Q ss_pred CHHHHHHHHHhhc-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 028588 156 SFRDVLNILHNLQ-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207 (207)
Q Consensus 156 ~~~e~~~~l~~i~-~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~~ 207 (207)
+++|++++++.++ .+++|+||||++|.+|. +++|+.+||+++++++..+.+
T Consensus 264 t~~e~~~~l~~l~~~~vvg~DivEv~P~~D~-~~~Ta~laa~li~~~l~~~~~ 315 (319)
T 3nio_A 264 TTIQAMEIIRGCQGLDLIGCDLVEVSPPYDT-TGNTSLLGANLLYEMLCVLPG 315 (319)
T ss_dssp CHHHHHHHHHTTTTSEEEEEEEECBCGGGCS-SSHHHHHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHhccCCeeEEEEEEECCCCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 48999999999999996 689999999999999998764
No 2
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=100.00 E-value=7.4e-53 Score=358.42 Aligned_cols=202 Identities=32% Similarity=0.554 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCC--C
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--A 79 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~--~ 79 (207)
++++++++.++++ +.+||+|||||++|+|.++|+.+++ ++++|||||||+|+++++.|+.++||||++++++++. +
T Consensus 98 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~a~~~~~-~~~~vI~~DAH~Dl~~~~~g~~~~hG~~~~~~~~~~~~~~ 175 (313)
T 1gq6_A 98 DTAQSHLSGLLKA-NAAFLMIGGDHSLTVAALRAVAEQH-GPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDP 175 (313)
T ss_dssp HHHHHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHHH-SSEEEEEECSSCCCCCCBTTBTTCTTCHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhC-CCEEEEeCCcchhhHHHHHHHHHHc-CCeEEEEEeCCCcCCCccCCCCCcCcCHHHHhhhccCCCC
Confidence 5789999999996 6899999999999999999999987 4899999999999999988888999999999999764 5
Q ss_pred CcEEEEcccC--CChhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCC
Q 028588 80 RRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGL 155 (207)
Q Consensus 80 ~~vv~iG~r~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl 155 (207)
++++++|+|+ .+++|+++++++|++++++++++.. ..+++++....+.++||||||+|||||+++|||++|+||||
T Consensus 176 ~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgGl 255 (313)
T 1gq6_A 176 AAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGL 255 (313)
T ss_dssp EEEEEEEECCC------CHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGBCTTTCCSBSSCCSSCB
T ss_pred CcEEEEEecCCCCCHHHHHHHHHcCCEEEEHHHHhhcCHHHHHHHHHHHcCCCeEEEEEeecCcCcccCCCCCCCCCCCC
Confidence 7999999996 5889999999999999999988653 34455443222357999999999999999999999999999
Q ss_pred CHHHHHHHHHhhc-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 028588 156 SFRDVLNILHNLQ-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 206 (207)
Q Consensus 156 ~~~e~~~~l~~i~-~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~ 206 (207)
+++|++++++.+. .+++|+||||++|.+|. +++|+.+||+++++++..+.
T Consensus 256 t~~e~~~~l~~l~~~~vvg~DivE~~P~~D~-~~~Ta~~aa~li~~~l~~~~ 306 (313)
T 1gq6_A 256 LSREVLALLRCVGDLKPVGFDVMEVSPLYDH-GGITSILATEIGAELLYQYA 306 (313)
T ss_dssp CHHHHHHHGGGGGGSEEEEEEEECBCGGGCS-TTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCeEEEEEEEECCCcCC-CChHHHHHHHHHHHHHHHHH
Confidence 9999999999985 48999999999999996 68999999999999998875
No 3
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=100.00 E-value=1.4e-52 Score=355.52 Aligned_cols=198 Identities=34% Similarity=0.524 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHh-cCCCC
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIME-GGYAR 80 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~-~~~~~ 80 (207)
+++++.++.++++ +.+||+||||||+|+|.++|+.++ ++++|||||||+|+++++.|+.++||||++++++ ++..+
T Consensus 98 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~a~~~~--~~~~vI~~DAH~Dl~~~~~g~~~~hG~~~~~~~~~~~~~~ 174 (305)
T 1woh_A 98 DRITEAARQVRGR-CRVPVFLGGDHSVSYPLLRAFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLV 174 (305)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEESSGGGHHHHHGGGTTS--TTEEEEEECSSCCCCSCBTTBSCSTTCHHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHhC-CCeEEEECCCccchHHHHHHHHhc--CCeEEEEEeCCcccCcccCCCCCCChhHHHHHhhccCCCC
Confidence 5789999999996 799999999999999999999876 5899999999999999988888999999999999 77667
Q ss_pred cEEEEcccCC--ChhHHHHHHHcCceEEEcccccch-HHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCH
Q 028588 81 RLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD-RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSF 157 (207)
Q Consensus 81 ~vv~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl~~ 157 (207)
+++++|+|+. +++|+++++++|+++++++++... ..+++++. +.+++|||||+|||||+++|||++|+||||++
T Consensus 175 ~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~~~~v~~~~~---~~~~vylSiDiDvlDpa~aPgtgtp~pgGlt~ 251 (305)
T 1woh_A 175 HITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLP---RGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTY 251 (305)
T ss_dssp EEEEEEECCSCCCHHHHHHHHHTTCEEEEHHHHHHCHHHHHTTSC---CSSEEEEEEEGGGBCTTTCCCBSSCCSSCBCH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHHHHHHHHHHHhh---CCCcEEEEEeecCCChhhCCCCCCCCCCCCCH
Confidence 9999999998 889999999999999999988643 23444332 56799999999999999999999999999999
Q ss_pred HHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 028588 158 RDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 206 (207)
Q Consensus 158 ~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~ 206 (207)
+|++++++.+. .+++|+||||++|.+|. +++|+.+||+++++++..+.
T Consensus 252 ~e~~~~l~~l~~~~~vvg~DivEv~P~~D~-~~~Ta~laa~li~~~l~~~~ 301 (305)
T 1woh_A 252 AQGMKILAAAAANNTVVGLDLVELAPNLDP-TGRSELLMARLVMETLCEVF 301 (305)
T ss_dssp HHHHHHHHHHHHHSEEEEEEEECBCGGGCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEEEEEEECCCCCC-CChHHHHHHHHHHHHHHHHH
Confidence 99999999994 69999999999999996 68999999999999999875
No 4
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=100.00 E-value=1.9e-52 Score=357.18 Aligned_cols=201 Identities=34% Similarity=0.582 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCc-cCCccHHHHHHhcCC--
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK-YSHASSFARIMEGGY-- 78 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~-~~~g~~~~~~~~~~~-- 78 (207)
++++++++.++++ +.+||+||||||+|||.++|+.+++ +++|||||||+|+++++.|.. ++||||++++++++.
T Consensus 103 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~al~~~~--~l~vI~~DAH~Dl~~~~~g~~g~~hG~~~~~~~~~~~~~ 179 (326)
T 3niq_A 103 RRIEGFYRQVHAA-GTLPLSVGGDHLVTLPIFRALGRER--PLGMVHFDAHSDTNDRYFGDNPYTHGTPFRRAIEEGLLD 179 (326)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHTSSS--CEEEEEECSSCCCCCCBTTTBCCSTTSHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhC-CCEEEEeCCcchhhHHHHHHHHhhC--CeeEEEccCcccccCCCCCCCCCcCchHHHHHHhccCCC
Confidence 5789999999996 7999999999999999999998764 899999999999999887755 899999999999875
Q ss_pred CCcEEEEcccCC--ChhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCC
Q 028588 79 ARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 154 (207)
Q Consensus 79 ~~~vv~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgG 154 (207)
+++++++|+|+. +++|++++++.|++++++++++.. ..+++++....+..++|||||+|||||+++|||++|+|||
T Consensus 180 ~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~pgG 259 (326)
T 3niq_A 180 PLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGG 259 (326)
T ss_dssp EEEEEEEEECSCCSCTTSTHHHHHHTCEEEEHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEGGGBCTTTCCCCSSCCSSC
T ss_pred CceEEEEeecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHhCCCeEEEEEeccccCHhhCCCCCCCCCCC
Confidence 479999999995 688999999999999999998754 3445544322234699999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcC-CeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 028588 155 LSFRDVLNILHNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 206 (207)
Q Consensus 155 l~~~e~~~~l~~i~~-~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~ 206 (207)
|+++|++.+++.++. +++|+||||++|.+|. +++|+.+||+++++++..+.
T Consensus 260 lt~~e~~~~l~~l~~~~vvg~DivEv~P~~D~-~~~Ta~laA~li~~~l~~~~ 311 (326)
T 3niq_A 260 MTSLQAQQLVRGLRGLDLVGADVVEVSPPFDV-GGATALVGATMMFELLCLLA 311 (326)
T ss_dssp BCHHHHHHHHHTTTTSCEEEEEEECCCGGGCS-TTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEEEECCCcCC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999965 8999999999999996 68999999999999999875
No 5
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=100.00 E-value=6e-52 Score=354.53 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcC-CCeEEEEEccCCCCCCCCC-CCccCCccHHHHHHhc---
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFE-GNKYSHASSFARIMEG--- 76 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~-~~~~vI~~DAH~D~~~~~~-g~~~~~g~~~~~~~~~--- 76 (207)
++++++|+.++++ +.+||+||||||+|+|+++|++++++ ++++|||||||+|+++++. +++++||||++.+++.
T Consensus 68 ~~l~~~v~~il~~-g~~PivLGGdHsia~g~i~a~~~~~~~~~lgvI~~DAH~Dl~~~~~~~sg~~HG~p~~~~lg~~~~ 146 (330)
T 4g3h_A 68 ENLIPCMKEVFEK-KEFPLILSSEHANMFGIFQAFRSVHKDKKIGILYLDAHADIHTAYDSDSKHIHGMPLGMVLNRVRS 146 (330)
T ss_dssp HTHHHHHHHHHTS-SSCEEEECSSGGGHHHHHHHHHHHTTTSCEEEEEECSBCCSSCBC------CBCCHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHC-CCEEEEECCcchhhHHHHHHHHHhCCCCceEEEEeCCCcccCCCccCCCCCccccHHHHHhhcccc
Confidence 5788999999996 79999999999999999999999885 3799999999999999875 4678999999977632
Q ss_pred -----------------------C----CCCcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHHHHhh-ccCC
Q 028588 77 -----------------------G----YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK-LGEG 126 (207)
Q Consensus 77 -----------------------~----~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~ 126 (207)
+ .++++++||+|+++++|+++++++|+++++++++ .. ..+++++. ...+
T Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~ei-~~g~~~v~~~~~~~l~~ 225 (330)
T 4g3h_A 147 GFNRMSESEEKAWQKLCSLGLEKGGLEIDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAI-RENMQEVVQKTKESLKA 225 (330)
T ss_dssp ---CCCHHHHHHHHHHHTTTCTTCCCCCCGGGEEEESCCBCCHHHHHHHHHHTCCEECHHHH-HHCHHHHHHHHHHHHTT
T ss_pred cccccccccchhhhhhhhhcccCccccCCcccEEEEecCCCCHHHHHHHHHcCCeEEEHHHh-hcCHHHHHHHHHHHhcC
Confidence 2 3579999999999999999999999999999998 42 34455443 1124
Q ss_pred cceEEEEEeccCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhc----CCeeEEEEeeecCCCCCCC--CHHHHHHHHHHHH
Q 028588 127 VKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ----ADVVAADVVEFNPQRDTVD--GMTAMVAAKLVRE 200 (207)
Q Consensus 127 ~~~vylsiDiDvldp~~~pg~~~p~pgGl~~~e~~~~l~~i~----~~vvg~di~E~~P~~d~~~--~~t~~~aa~li~~ 200 (207)
.+++|||||+|||||+++|||++|+||||+++|++.+++.+. .+++|+||+|+||.+|. + ++|+.+|++|+++
T Consensus 226 ~~~vylS~DiDvLDpa~aPgtgtP~pgGlt~~e~~~il~~l~~~~~~~vvg~DivEvnP~~D~-~~~~~TA~laa~li~~ 304 (330)
T 4g3h_A 226 VDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLESFKDRLKAVEVTEYNPTVSI-KHNNEEEKQVLEILDL 304 (330)
T ss_dssp CSEEEEEEEGGGBCTTTCCSSSSCCSSCBCHHHHHHHHHHHHHHTTTTEEEEEEECCCGGGCC-CCSSHHHHHHHHHHHH
T ss_pred CCeEEEEEecCcCChhhCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECccccC-CccCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999983 49999999999999996 5 8999999999999
Q ss_pred HHHHhh
Q 028588 201 LTAKIS 206 (207)
Q Consensus 201 ~~~~~~ 206 (207)
++..+.
T Consensus 305 ~l~~l~ 310 (330)
T 4g3h_A 305 IINSCK 310 (330)
T ss_dssp HHHHHC
T ss_pred HHHhcc
Confidence 999875
No 6
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=100.00 E-value=1e-51 Score=347.37 Aligned_cols=197 Identities=30% Similarity=0.529 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCCCCc
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARR 81 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~~~~ 81 (207)
++++++++.++++ +.+||+||||||+|+|.++|+.+++ ++++|||||||+|+++++.|..++||++++++.+...+++
T Consensus 75 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~a~~~~~-~~l~vI~~DAH~Dl~~~~~G~~~shgt~~~~~~~~~~~~~ 152 (287)
T 3lhl_A 75 KEIYQETYKIVRD-SKVPFMIGGEHLVTLPAFKAVHEKY-NDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNK 152 (287)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHHC-SSEEEEEECSBCCCCSCBTTBSSSTTTHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhC-CCeEEEeCCcchhhHHHHHHHHHhc-CCcEEEEecCCcccCcccCCCccccccHHHHHhhhcCccc
Confidence 5789999999996 7999999999999999999999987 5899999999999999988888999999999998656789
Q ss_pred EEEEcccCCChhHHHHHHHc-CceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCHHHH
Q 028588 82 LLQVGIRSITKEGREQGKRF-GVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 160 (207)
Q Consensus 82 vv~iG~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl~~~e~ 160 (207)
++++|+|+.+++|++++++. ++.+++.+ +....++++.+. ..++|||||+|||||+++|||++|+||||+++|+
T Consensus 153 i~~iGiR~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~l~~l~----~~~vylSiDiDvlDpa~aPgtgtp~pgGlt~~e~ 227 (287)
T 3lhl_A 153 IFQFGIRSGTKEEFKFATEEKHTYMEIGG-IDTFENIVNMLN----GKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREF 227 (287)
T ss_dssp EEEEEECBCCHHHHHHHHTSCSSEEEETC-CTTHHHHHHHTT----TCEEEEEEEGGGBCTTTCCSBSSCCSSCBCHHHH
T ss_pred EEEEEcCCCCHHHHHHHHhcCCCEEEecH-HhHHHHHHHHcC----CCcEEEEEecCcCCHhhCCCCCCCCCCCCCHHHH
Confidence 99999999999999999998 88888764 443355666553 3599999999999999999999999999999999
Q ss_pred HHHHHhh--cC-CeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 028588 161 LNILHNL--QA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 206 (207)
Q Consensus 161 ~~~l~~i--~~-~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~ 206 (207)
+.+++.+ +. +++|+||||++|.+|. +++|+.+||+++++++..+.
T Consensus 228 ~~~l~~l~~~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~~~~ 275 (287)
T 3lhl_A 228 QEIFKIIKNSNINIVGCDIVELSPDYDT-TGVSTVIACKILRELCLIIS 275 (287)
T ss_dssp THHHHHHHTSCCEEEEEEEECBCGGGCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEEEECCCCCC-CChHHHHHHHHHHHHHHHHH
Confidence 9999998 44 8999999999999996 68999999999999999875
No 7
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-51 Score=351.80 Aligned_cols=200 Identities=27% Similarity=0.496 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHhcCCc--ceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCC-
Q 028588 2 NVITESVKLVMEEDPL--HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY- 78 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~--~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~- 78 (207)
++++++++.++++ +. +||+|||||++|+|.++|+.+.+ ++++|||||||+|+++ +.++.++||||++++++++.
T Consensus 105 ~~i~~~v~~~l~~-g~~~~pi~lGGdHsit~~~~~al~~~~-~~~~vI~~DAH~Dl~~-~~~~~~~hG~~~~~~~~~~~~ 181 (322)
T 3m1r_A 105 HHIFQTMHALLSD-HPDWVPLILGGDNSISYSTIKAIAQTK-GTTAVIQFDAHHDVRN-TEDGGPTNGTPFRRLLDEEII 181 (322)
T ss_dssp HHHHHHHHHHHHH-CTTEEEEEEESCTTHHHHHHHHHHHHH-CSEEEEEECSSCCCCC-SSCC--CTTCHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhc-CCCceeEEeCCCccccHHHHHHHHHhC-CCeEEEEccCCccccC-CCCCCCCCccHHHHHHhccCC
Confidence 5789999999997 68 99999999999999999999876 5899999999999999 67778899999999999763
Q ss_pred -CCcEEEEcccCC--ChhHHHHHHHcCceEEEcccccch--HHHHHHhh--ccCCcceEEEEEeccCCCCCCCCCCCCCC
Q 028588 79 -ARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK--LGEGVKGVYISVDVDCLDPAFAPGVSHIE 151 (207)
Q Consensus 79 -~~~vv~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~--~~~~~~~vylsiDiDvldp~~~pg~~~p~ 151 (207)
+++++++|+|++ +++|++++++.|++++++++++.. ..+++++. ...+++++|||||+|||||+++|||++|+
T Consensus 182 ~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~~vylSiDiDvLDpa~aPgtgtp~ 261 (322)
T 3m1r_A 182 EGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIG 261 (322)
T ss_dssp CGGGEEEEEECTTSSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCTTSSSCC
T ss_pred CCceEEEEeeCCCCCCHHHHHHHHHCCCEEEEHHHHhhcCHHHHHHHHHHHhhccCCeEEEEEeecccChhhCCCCCCCC
Confidence 589999999996 889999999999999999998753 23444332 11345699999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 028588 152 PGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 205 (207)
Q Consensus 152 pgGl~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~ 205 (207)
||||+++|++.+++.+. .+++|+||||++|.+|. +++|+.+||+++++++.++
T Consensus 262 pgGlt~~e~~~il~~l~~~~~vvg~DivEv~P~~D~-~~~Ta~laa~li~~~l~~~ 316 (322)
T 3m1r_A 262 PGGLYTDELLEAVKYIAQQPNVAGIEIVEVDPTLDF-RDMTSRAAAHVLLHALKGM 316 (322)
T ss_dssp SSCBCHHHHHHHHHHHHTSTTEEEEEEECCCGGGSS-TTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCCEEEEEEEEECCCCCC-CChHHHHHHHHHHHHHHHH
Confidence 99999999999999995 48999999999999996 6899999999999999887
No 8
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=100.00 E-value=3.1e-52 Score=353.85 Aligned_cols=197 Identities=36% Similarity=0.557 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCCCCc
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARR 81 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~~~~ 81 (207)
++++++++.++++ +.+||+|||||++|||.++|+.+ +++|||||||+|+++++.|+.++||||++++++.+.+++
T Consensus 101 ~~i~~~v~~~l~~-g~~PivlGGdHsit~~~~~a~~~----~l~vI~~DAH~Dl~~~~~g~~~shgt~~~~~~e~~~~~~ 175 (313)
T 3pzl_A 101 DTVESVVSAVMSD-GKIPIMLGGEHSITVGAVRALPK----DVDLVIVDAHSDFRSSYMGNKYNHACVTRRALDLLGEGR 175 (313)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHTTCCS----SEEEEEECSBCCCCSCBTTBTTSTTSHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhC-CCEEEEECCchHHHHHHHHHhcc----CCcEEEecCccccccccCCCCcCcHHHHHHHHhcCCCCe
Confidence 5789999999996 79999999999999999999863 799999999999999888888999999999998877889
Q ss_pred EEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCHHH
Q 028588 82 LLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 159 (207)
Q Consensus 82 vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl~~~e 159 (207)
++++|+|+.+++|++++++.|+++++++++... ..+++.++. . .+++|||||+|||||+++|||++|+||||+++|
T Consensus 176 ~~~iGiR~~~~~e~~~~~~~gi~~~~~~ei~~~g~~~v~~~i~~-~-~~~vylSiDiDvLDpa~aPgtgtp~pgGlt~~e 253 (313)
T 3pzl_A 176 ITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDR-K-SRRVYISVDMDGIDPAYAPAVGTPEPFGLADTD 253 (313)
T ss_dssp EEEEEECBCCHHHHTSGGGGGSEEEEHHHHHHHCSHHHHHHHHH-H-CSEEEEEEEGGGBCTTTCTTBSSCCSSCBCHHH
T ss_pred EEEEeCCCCCHHHHHHHHHCCCEEEEHHHHhhhhHHHHHHHHhc-c-CCeEEEEEeccccChhhCCCCCCCCCCCCCHHH
Confidence 999999999999999999999999999998653 456666652 2 279999999999999999999999999999999
Q ss_pred HHHHHHhhcCCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 028588 160 VLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207 (207)
Q Consensus 160 ~~~~l~~i~~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~~ 207 (207)
++.+++.+..+++|+||||++|.+|. ++|+.+||+++++++..+.|
T Consensus 254 ~~~il~~l~~~vvg~DivEv~P~~D~--~~Ta~laA~li~~~l~~~~~ 299 (313)
T 3pzl_A 254 VRRLIERLSYKAVGFDIVEFSPLYDN--GNTSMLAAKLLQVFIASREK 299 (313)
T ss_dssp HHHHHHHHGGGEEEEEEECBCGGGSS--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCeEEEEEEEECCCcCC--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999669999999999999983 79999999999999988753
No 9
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=100.00 E-value=3.2e-51 Score=348.64 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=175.0
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcC--CC
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG--YA 79 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~--~~ 79 (207)
+++++.++.++++ +.+||+||||||+|+|.++|+.++++++++|||||||+|+++++.+..++||||++++++++ .+
T Consensus 99 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~a~~~~~~~~~~vI~~DAH~Dl~~~~~~~~~~~G~~~~~~~~~~~~~~ 177 (316)
T 2a0m_A 99 EKLESKVFTVLAR-GAFPFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSG 177 (316)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHHSTTCCEEEEECSSCCCCCCCTTSCCCTTCHHHHHHTCTTCCG
T ss_pred HHHHHHHHHHHhC-CCeEEEECCcchhhHHHHHHHHHHhCCCEEEEEEeccccccCcccCCCCCCCcHHHHHHHhccCCC
Confidence 5789999999996 68999999999999999999998875689999999999999984333579999999999964 46
Q ss_pred CcEEEEcccCCC--hhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCc-ceEEEEEeccCCCCCCCCCCCCCCCCC
Q 028588 80 RRLLQVGIRSIT--KEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGV-KGVYISVDVDCLDPAFAPGVSHIEPGG 154 (207)
Q Consensus 80 ~~vv~iG~r~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~-~~vylsiDiDvldp~~~pg~~~p~pgG 154 (207)
++++++|+|+.+ +++++++++.|+++++++++... .+.++.+. ... ++||||||+|||||+++|||++|+|||
T Consensus 178 ~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~~v~~~l~~~~--~~~~~~vylS~DiDvLDpa~aPgtgtp~pGG 255 (316)
T 2a0m_A 178 KRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAF--GLTGKNTFFSFDVDSLKSSDMPGVSCPAAVG 255 (316)
T ss_dssp GGEEEEEECTTTSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHH--HHHCSSEEEEEEGGGBBTTTCCCBSSCBSSC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHhhhHHHHHHHHHH--hhCCCeEEEEEccccCccccCCCCCCCCCCC
Confidence 899999999964 67899999999999999988641 12333321 112 689999999999999999999999999
Q ss_pred CCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 028588 155 LSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207 (207)
Q Consensus 155 l~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~~ 207 (207)
|+++|++.+++.+. .+++|+||||++|.+|. + +|+.+||+++++++..+.+
T Consensus 256 lt~~e~~~il~~l~~~~~vvg~DivEv~P~~D~-~-~Ta~laa~li~~~l~~~~~ 308 (316)
T 2a0m_A 256 LSAQEAFDMCFLAGKTPTVMMMDMSELNPLVEE-Y-RSPRVAVYMFYHFVLGFAT 308 (316)
T ss_dssp BCHHHHHHHHHHHHHCTTEEEEEEECBCTTTCC-S-HHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEEEEECCCCCc-c-HHHHHHHHHHHHHHHHHHh
Confidence 99999999999993 59999999999999996 5 9999999999999998764
No 10
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-51 Score=352.35 Aligned_cols=197 Identities=32% Similarity=0.565 Sum_probs=172.5
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCC--C
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--A 79 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~--~ 79 (207)
++++++++.++++ +.+||+|||||++|||.++|+.++++++++|||||||+|+++++.|..++||||++++++++. +
T Consensus 116 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~a~~~~~~~~l~vI~~DAH~Dl~~~~~g~~~~hG~~~~~~~~~~~~~~ 194 (324)
T 4dz4_A 116 PAIVEHARTILQS-DARMLTLGGDHYITYPLLIAHAQKYGKPLSLIHFDAHCDTWADDAPDSLNHGTMFYKAVKDGLIDP 194 (324)
T ss_dssp HHHHHHHHHHHTT-TCEEEEEESSGGGHHHHHHHHHHHHCSSBEEEEECSSCCCCCCC---CCCTTTHHHHHHHTTSBCG
T ss_pred HHHHHHHHHHHHC-CCEEEEeCCcchhhHHHHHHHHHhcCCCcEEEEccCcccccCCCCCCCCCChhHHHHHhhCCCCCC
Confidence 5789999999996 799999999999999999999988855899999999999999987777899999999999874 4
Q ss_pred CcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCH
Q 028588 80 RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSF 157 (207)
Q Consensus 80 ~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl~~ 157 (207)
++++++|+|+.+ +++.|++++++++++.. ..+++++....+.+++|||||+|||||+++|||++|+||||++
T Consensus 195 ~~~~~iGiR~~~------~~~~g~~~~~~~~i~~~g~~~v~~~~~~~~~~~~vylS~DiDvlDpa~aPgtgtp~pgGlt~ 268 (324)
T 4dz4_A 195 KASVQVGIRTWN------DDYLGINVLDAAWVHEHGARATLERIESIVGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSS 268 (324)
T ss_dssp GGCEEEEECSCC------SCCTTCEEEEHHHHHHHCHHHHHHHHHHHHTTSCEEEEEEGGGBCTTTCCSSSSCCSSCBCH
T ss_pred ceEEEEeCCcch------HHHCCCEEEEHHHhhhcCHHHHHHHHHHHcCCCcEEEEEecCccCHhhCCCCCCCCCCCCCH
Confidence 899999999987 46789999999988653 3455554322234699999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 028588 158 RDVLNILHNLQ-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 206 (207)
Q Consensus 158 ~e~~~~l~~i~-~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~ 206 (207)
+|++.+++.+. .+++|+||+|++|.+|. +++|+.+||+++++++..+.
T Consensus 269 ~e~~~~l~~l~~~~vvg~DivEv~P~~D~-~~~Ta~laA~li~~~l~~~~ 317 (324)
T 4dz4_A 269 AQALAIVRGLGGVNLIGADVVEVAPAYDQ-SEITAIAAAHVACDLLCLWR 317 (324)
T ss_dssp HHHHHHHHTCTTSCEEEEEEECCCGGGCS-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeeEEEEEEECCccCC-CChHHHHHHHHHHHHHHHHH
Confidence 99999999996 49999999999999996 68999999999999999875
No 11
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=100.00 E-value=6.6e-51 Score=349.37 Aligned_cols=203 Identities=23% Similarity=0.405 Sum_probs=178.1
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc------CCCeEEEEEccCCCCCCCCCC---CccCCccHHHH
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL------GGPVDVLHLDAHPDIYDAFEG---NKYSHASSFAR 72 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~------~~~~~vI~~DAH~D~~~~~~g---~~~~~g~~~~~ 72 (207)
+++++.++.+++ . .+||+||||||+|+|.++|+.+++ +++++|||||||+|+++++.| +.++||||+++
T Consensus 105 ~~i~~~v~~~l~-~-~~pi~LGGdHsit~g~~~a~~~~~~~~~~~~~~l~vI~fDAH~Dl~~~~~g~~~~~~~hGt~~~~ 182 (336)
T 1xfk_A 105 QECAQVIQQALP-H-ARAIVLGGGHEIAWATFQGLAQHFLATGVKQPRIGIINFDAHFDLRTFESELAPVRPSSGTPFNQ 182 (336)
T ss_dssp HHHHHHHHHHTT-T-CCEEEECSSTTHHHHHHHHHHHHHHHTTCCSCCEEEEEECSSCCCCCSSCSSSCCCCCTTCHHHH
T ss_pred HHHHHHHHHHHH-h-CCeEEEeCchhhhHHHHHHHHHHhccccccCCCEEEEEEecCccCCCCccCcCCCCCCCchHHHH
Confidence 578899999998 4 799999999999999999999877 368999999999999998766 46899999999
Q ss_pred HHhc----CCCCcEEEEcccCCC--hhHHHHHHHcCceEEEcccccch--HHHHHHhh-ccCCcceEEEEEeccCCCCCC
Q 028588 73 IMEG----GYARRLLQVGIRSIT--KEGREQGKRFGVEQYEMRTFSRD--RQFLENLK-LGEGVKGVYISVDVDCLDPAF 143 (207)
Q Consensus 73 ~~~~----~~~~~vv~iG~r~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~~vylsiDiDvldp~~ 143 (207)
+++. ..+++++++|+|+.+ +++++++++.|+++++++++... ..+++++. ...+.++||||||+|||||++
T Consensus 183 ~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~gi~~~~~~ei~~~g~~~v~~~i~~~l~~~~~vylSiDiDvLDpa~ 262 (336)
T 1xfk_A 183 IHHFCQQQGWDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYLTIDLDVFPAAS 262 (336)
T ss_dssp HHHHHHHHTCCCEEEEEEECTTTSCHHHHHHHHHTTCEEEEGGGCSTTTHHHHHHHHHHHHHTCSEEEEEEEGGGSBTTT
T ss_pred HHhhccccCCCceEEEEEeCCCCCCHHHHHHHHHcCCEEEEHHHHHhcCHHHHHHHHHHHhcCCCeEEEEEeeccCChhc
Confidence 9984 467899999999964 56789999999999999998753 34455443 112357999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhh-c--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 028588 144 APGVSHIEPGGLSFRDVLNILHNL-Q--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207 (207)
Q Consensus 144 ~pg~~~p~pgGl~~~e~~~~l~~i-~--~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~~~ 207 (207)
+|||++|+||||+++|++.+++.+ . .+++|+||||++|.+|. +++|+.+||+++++++.+|.|
T Consensus 263 aPgtgtp~pgGlt~~e~~~~l~~l~~~~~~vvg~DivEv~P~~D~-~~~Ta~laa~li~~~l~~~~~ 328 (336)
T 1xfk_A 263 APGVSAPAARGVSLEALAPYFDRILHYKNKLMIADIAEYNPSFDI-DQHTARLAARLCWDIANAMAE 328 (336)
T ss_dssp CCSSSSCBSSCCCHHHHHHHHHHHHHCTTTEEEEEEECCCGGGCS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCC-cchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5 59999999999999996 689999999999999998864
No 12
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=100.00 E-value=4.8e-51 Score=345.33 Aligned_cols=199 Identities=31% Similarity=0.450 Sum_probs=173.8
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCC-CCccCCccHHHHHHhcC---
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE-GNKYSHASSFARIMEGG--- 77 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~-g~~~~~g~~~~~~~~~~--- 77 (207)
+++++.++.++++ +.+||+||||||+|+|.++|+.+++ ++++|||||||+|+++++. +++++||||++++++.+
T Consensus 76 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~~~~~~~-~~~~vI~~DAH~Dl~~~~~~~sg~~hG~~~~~a~~~~~~~ 153 (299)
T 2cev_A 76 EKLAAAVDQVVQR-GRFPLVLGGDHSIAIGTLAGVAKHY-ERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPA 153 (299)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHTTC-SSEEEEEESSBCCCCCTTTCSSCCGGGSHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHhC-CCeEEEecCCcccchhhhHHHHhhC-CCeEEEEEecCCCcCCCCCCCCccccchHHHHHhhcCchh
Confidence 4678899999986 6899999999999999999999877 5899999999999999864 46678999999999864
Q ss_pred -----------CCCcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHHHHhh--ccCCcceEEEEEeccCCCCC
Q 028588 78 -----------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK--LGEGVKGVYISVDVDCLDPA 142 (207)
Q Consensus 78 -----------~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~--~~~~~~~vylsiDiDvldp~ 142 (207)
.+++++++|+|+.+++|++++++.|+++++++++... ..+++++. ...+.++||||||+|||||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~l~~~~~~~~~vylSiDiDvlDp~ 233 (299)
T 2cev_A 154 LTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPS 233 (299)
T ss_dssp HHTGGGCSCSSCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTT
T ss_pred ccccccccccCCccceEEEECCCCCHHHHHHHHHcCCeEEEHHHHhhcCHHHHHHHHHHHhccCCCeEEEEEccCccChh
Confidence 2478999999999999999999999999999988653 22333221 11135799999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHH
Q 028588 143 FAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 203 (207)
Q Consensus 143 ~~pg~~~p~pgGl~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~ 203 (207)
++|||++|+||||+++|++.+++.+. .+++|+||||++|.+|. +++|+.+|++++++++.
T Consensus 234 ~aPgtgtp~pgGlt~~e~~~~l~~l~~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~ 295 (299)
T 2cev_A 234 DAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDE-RNKTASVAVALMGSLFG 295 (299)
T ss_dssp TCCCCSSCCSSCBCHHHHHHHHHHHHHHTCEEEEEEECCCGGGSS-TTHHHHHHHHHHHHHTT
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCCC-ccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999994 59999999999999996 68999999999999875
No 13
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=100.00 E-value=7.5e-51 Score=342.78 Aligned_cols=197 Identities=30% Similarity=0.422 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCC-CCccCCccHHHHHHhcC---
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE-GNKYSHASSFARIMEGG--- 77 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~-g~~~~~g~~~~~~~~~~--- 77 (207)
+++++.++. +++ +.+||+||||||+|+|.++|+.+ + ++++|||||||+|+++++. +++++||||++++++.+
T Consensus 74 ~~i~~~v~~-l~~-g~~pi~lGGdHsit~~~~~a~~~-~-~~~~vi~~DAH~Dl~~~~~~~sg~~hG~~~~~~~~~~~~~ 149 (290)
T 2ef5_A 74 LVLKERLAA-LPE-GVFPIVLGGDHSLSMGSVAGAAR-G-RRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPR 149 (290)
T ss_dssp HHHHHHHHT-SCT-TEEEEEEESSGGGHHHHHHHHHT-T-SCCEEEEECSBCCCCCTTTC-CCCGGGSHHHHHTTCSCHH
T ss_pred HHHHHHHHH-hhc-CceEEEEcCcccchHHHHHHHhc-C-CCeEEEEEecCcccCCCCCCCCCcccccHHHHHhcCCchh
Confidence 457778888 775 78999999999999999999988 4 6899999999999999864 56678999999999875
Q ss_pred --------CCCcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccCCCCCCCCCC
Q 028588 78 --------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGV 147 (207)
Q Consensus 78 --------~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~ 147 (207)
.+++++++|+|+.+++|+++++++|+++++++++... ..+++++....+++++|||||+|||||+++|||
T Consensus 150 ~~~~~~~~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~l~~~~vylSiDiDvlDp~~aPgt 229 (290)
T 2ef5_A 150 LTEVFRAVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGV 229 (290)
T ss_dssp HHHHHCCCCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHTTTSCEEEEEEGGGBCTTTCCCC
T ss_pred ccccccccCcccEEEEECCCCCHHHHHHHHHcCCeEEEHHHHHhcCHHHHHHHHHHhcCCCcEEEEEccCCCChhhCCCC
Confidence 2579999999999999999999999999999988653 233443321112579999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHH
Q 028588 148 SHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 203 (207)
Q Consensus 148 ~~p~pgGl~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~ 203 (207)
++|+||||+++|++.+++.+. .+++|+||||++|.+|. +++|+.+|++++++++.
T Consensus 230 gtp~pgGlt~~e~~~~l~~l~~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~ 286 (290)
T 2ef5_A 230 GTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDE-RNRTAEMLVGLALSLLG 286 (290)
T ss_dssp SSCCSSCBCHHHHHHHHHHHHHHTCEEEEEEECCCTTTCS-TTHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCEEEEEEEEECCCCCC-ccHHHHHHHHHHHHHHh
Confidence 999999999999999999994 59999999999999996 68999999999999875
No 14
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=100.00 E-value=2.2e-50 Score=342.21 Aligned_cols=200 Identities=25% Similarity=0.409 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCC-CCCccCCccHHHHHH-hc---
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF-EGNKYSHASSFARIM-EG--- 76 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~-~g~~~~~g~~~~~~~-~~--- 76 (207)
+++++.++.++++ +.+||+||||||+|+|.++|+.+++ ++++|||||||+|++++. .+++..||||+++++ +.
T Consensus 74 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~~~~~~~-~~~~vI~~DAH~Dl~~~~~~~sg~~hG~~~~~~~~~~~~~ 151 (306)
T 1pq3_A 74 QELAEVVSRAVSD-GYSCVTLGGDHSLAIGTISGHARHC-PDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDK 151 (306)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHTTC-TTCEEEEECSSCCCCCTTTCSSCCGGGCHHHHHCTTTGGG
T ss_pred HHHHHHHHHHHhC-CCeEEEEcCcccchHhHHHHHHhhC-CCeEEEEEecCcccCCCCCCCCCcccchHHHHHHhccCcc
Confidence 5788899999996 7899999999999999999999887 489999999999999864 345678999999999 53
Q ss_pred -----C--------CCCcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HH----HHHHhhccCCcceEEEEEecc
Q 028588 77 -----G--------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQ----FLENLKLGEGVKGVYISVDVD 137 (207)
Q Consensus 77 -----~--------~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~l~~~~~~~~~~~vylsiDiD 137 (207)
+ .+++++++|+|+++++|++++++.|+++++++++... .. +++.++ ..+++++|||||+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~-~~~~~~vylSiDiD 230 (306)
T 1pq3_A 152 VPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLI-GKRQRPIHLSFDID 230 (306)
T ss_dssp SCCCTTCTTCCCCSCGGGEEEESCCCCCHHHHHHHHHTTCEEECHHHHHHHCHHHHHHHHHHHHH-SSSCCCEEEEEEGG
T ss_pred cccccccccccCcCCcccEEEEEcCCCCHHHHHHHHHcCCeEEEhHHHhhhCHHHHHHHHHHHHh-hcCCCeEEEEEecC
Confidence 1 2579999999999999999999999999999988642 22 333332 12467999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCH---HHHHHHHHHHHHHHH
Q 028588 138 CLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGM---TAMVAAKLVRELTAK 204 (207)
Q Consensus 138 vldp~~~pg~~~p~pgGl~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~---t~~~aa~li~~~~~~ 204 (207)
||||+++|||++|+||||+++|++.+++.+. .+++|+||||++|.+|+.+++ |+.+|++++++++..
T Consensus 231 vlDp~~aPgtgtp~pgGlt~~e~~~~l~~l~~~~~vvg~DivEv~P~~D~~~~~~~~Ta~laa~li~~~lg~ 302 (306)
T 1pq3_A 231 AFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEEAKTTANLAVDVIASSFGQ 302 (306)
T ss_dssp GBCTTTCCSBSSCCSSCBCHHHHHHHHHHHHTTTCEEEEEEECBCGGGSSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCccccCCCCCCCCCCCCHHHHHHHHHHHHcCCCEEEEEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999994 499999999999999933567 999999999999863
No 15
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=100.00 E-value=3.6e-50 Score=343.09 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=173.8
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCC-CCCccCCccHHHHHH-hcC--
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF-EGNKYSHASSFARIM-EGG-- 77 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~-~g~~~~~g~~~~~~~-~~~-- 77 (207)
+++++.++.++++ +.+||+||||||+|+|.++|+.+++ ++++|||||||+|++++. .++++.||||+++++ +.+
T Consensus 78 ~~i~~~v~~~l~~-g~~pi~lGGdHsit~~~~~a~~~~~-~~~~vI~~DAH~Dl~~~~~~~sg~~hG~~~~~a~~~~~~~ 155 (322)
T 2aeb_A 78 EQLAGKVAEVKKN-GRISLVLGGDHSLAIGSISGHARVH-PDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGK 155 (322)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHHC-TTCEEEEESSSCCCCCTTTCSSCCGGGCHHHHHBGGGTTT
T ss_pred HHHHHHHHHHHhC-CCeEEEecCccccchHHHHHHHhhC-CCEEEEEEecCcccCCCCCCCCCccccHHHHHHHhccccc
Confidence 5788999999996 6899999999999999999999987 489999999999999865 345678999999999 542
Q ss_pred --------------CCCcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHH----HHhhccCCcceEEEEEecc
Q 028588 78 --------------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFL----ENLKLGEGVKGVYISVDVD 137 (207)
Q Consensus 78 --------------~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l----~~~~~~~~~~~vylsiDiD 137 (207)
.+++++++|+|+++++|++++++.|+++++++++.+. ..++ +.++ ..+.+++|||||+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~-~~~~~~vylSiDiD 234 (322)
T 2aeb_A 156 IPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLL-GRKKRPIHLSFDVD 234 (322)
T ss_dssp SCCCTTCTTCCCCBCGGGEEEEEECCCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHH-SSSCCCEEEEEEGG
T ss_pred cccccccccccccCCCCCEEEEEcCCCCHHHHHHHHHcCCEEEEHHHHHhhCHHHHHHHHHHHHh-hcCCCeEEEEEecC
Confidence 2479999999999999999999999999999988642 2233 3332 12467999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCH---HHHHHHHHHHHHHHHh
Q 028588 138 CLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGM---TAMVAAKLVRELTAKI 205 (207)
Q Consensus 138 vldp~~~pg~~~p~pgGl~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~~~---t~~~aa~li~~~~~~~ 205 (207)
||||+++|||++|+||||+++|++.+++.+. .+++|+||||++|.+|+.++. |+.+|++++++++...
T Consensus 235 vLDpa~aPgtgtp~pgGlt~~e~~~~l~~l~~~~~vvg~DivEv~P~~D~~~~~~~~Ta~laa~li~~~l~~~ 307 (322)
T 2aeb_A 235 GLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLA 307 (322)
T ss_dssp GBCTTTCCSBSSCCSSCBCHHHHHHHHHHHHHHSCEEEEEEECBCGGGCSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCccccCCCCCCCCCCCCHHHHHHHHHHHHccCCEEEEEEEEECCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999994 599999999999999933567 9999999999998753
No 16
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=100.00 E-value=2.7e-49 Score=342.75 Aligned_cols=200 Identities=24% Similarity=0.358 Sum_probs=173.8
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCC-CCCccCCccHHHHHHhcC---
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF-EGNKYSHASSFARIMEGG--- 77 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~-~g~~~~~g~~~~~~~~~~--- 77 (207)
++++++|+.++++ +.+||+||||||+|||+++|+.+++ ++++|||||||+|+++|. .+++..||||++++++.+
T Consensus 172 ~~L~~~V~~il~~-G~~PIvLGGDHSIalg~i~ala~~~-~~lgVI~fDAH~Dlrtpe~s~SGn~hG~pls~alg~~~~~ 249 (413)
T 3sl1_A 172 KNLFDTMSNELRK-KNFVLNIGGDHGVAFSSILSSLQMY-QNLRVIWIDAHGDINIPETSPSGNYHGMTLAHTLGLFKKK 249 (413)
T ss_dssp HHHHHHHHHHHTT-TCEEEEEESSGGGHHHHHHHHHHHC-TTCEEEEECSSCCCCCTTTCSSCCGGGTHHHHHTTCCCSB
T ss_pred HHHHHHHHHHHHC-CCEEEEECCchHhHHHHHHHHHHhC-CCceEEEecCccccCCcccCCCCCcCCCHHHHHHhccccc
Confidence 5789999999996 7999999999999999999999987 589999999999999865 345568999999998732
Q ss_pred -------------CCCcEEEEcccCCChhHHHHHHHcCceEEEcccccch--HHHHHHhh-c--cCCcceEEEEEeccCC
Q 028588 78 -------------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK-L--GEGVKGVYISVDVDCL 139 (207)
Q Consensus 78 -------------~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~--~~~~~~vylsiDiDvl 139 (207)
.++++++||+|+++++|++++++.|+++|++.+++.. ..+++++. . ..+++++|||||+|||
T Consensus 250 ~~~f~~~~~~~~l~p~~vv~IGIRs~d~eE~e~~~~~Gi~v~t~~eI~~~Gi~~vie~il~~l~~~~~~~VYLSfDIDvL 329 (413)
T 3sl1_A 250 VPYFEWSENLTYLKPENTAIIGIRDIDAYEKIILKKCNINYYTIFDIEKNGIYNTICTALEKIDPNSNCPIHISLDIDSV 329 (413)
T ss_dssp CTTCGGGTTSCCCCGGGEEEEEECCCCHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHCTTSCSCEEEEEEGGGB
T ss_pred ccccchhccccccCcceEEEEEcCCCCHHHHHHHHHcCCEEEeHHHhhhcCHHHHHHHHHHHhhhcCCceEEEEEeccEE
Confidence 2468999999999999999999999999999998653 23343332 1 1246799999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCC--------------CHHHHHHHHHHHHHHH
Q 028588 140 DPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVD--------------GMTAMVAAKLVRELTA 203 (207)
Q Consensus 140 dp~~~pg~~~p~pgGl~~~e~~~~l~~i~--~~vvg~di~E~~P~~d~~~--------------~~t~~~aa~li~~~~~ 203 (207)
||+++|||++|+||||+++|++.+++.+. .+++|+||||++|.+|..+ ++|+.+|++|+++++.
T Consensus 330 DPa~APGtGTPepGGLt~rEll~llr~L~~s~kVvG~DIVEvnP~lD~~~~~~~~~~~~~~~~~~~Ta~lA~~li~s~lG 409 (413)
T 3sl1_A 330 DNVFAPGTGTVAKGGLNYREINLLMKILAETKRVVSMDLVEYNPSLDEVDKKVHGDSLPILDNATKTGKLCLELIARVLG 409 (413)
T ss_dssp CTTTCCCSSSCCSSCBCHHHHHHHHHHHHHHSCEEEEEEECCCGGGCCCCCCCTTCCSSCCTTCCHHHHHHHHHHHHHTT
T ss_pred ChhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCEEEEEEEeECCccCccccccccccccccccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999984 5999999999999999624 7999999999999874
No 17
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=53.44 E-value=12 Score=23.17 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHH
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSE 38 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~ 38 (207)
+.+...++...+.++..+++|-+|-.+.|+.+-.+-.
T Consensus 30 ~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd 66 (74)
T 2jwk_A 30 EMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALN 66 (74)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHH
Confidence 3566677777666667889999999999998866543
No 18
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=51.30 E-value=1.1e+02 Score=25.87 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHHhcCC-CCcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCC
Q 028588 69 SFARIMEGGY-ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGV 147 (207)
Q Consensus 69 ~~~~~~~~~~-~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~ 147 (207)
-+..+.+.|. +.+++..|. ..++++.+.+.++|+..+..+.... ++.+.......+++|-++.+. +..++
T Consensus 94 E~~~~~~~G~~~~~Ii~~g~-~k~~~ei~~a~~~gv~~~~vds~~e----l~~l~~~~~~~~v~lRvn~~~---~~~~~- 164 (424)
T 7odc_A 94 EIQLVQGLGVPAERVIYANP-CKQVSQIKYAASNGVQMMTFDSEIE----LMKVARAHPKAKLVLRIATDD---SKAVC- 164 (424)
T ss_dssp HHHHHHHTTCCGGGEEECCS-SCCHHHHHHHHHTTCCEEEECSHHH----HHHHHHHCTTCEEEEEBCC-----------
T ss_pred HHHHHHHcCCChhhEEECCC-CCCHHHHHHHHHCCCCEEEeCCHHH----HHHHHHhCCCCeEEEEECCCC---CCCCC-
Confidence 3444555443 357776664 3467788888889987666554432 222221112357888888762 11111
Q ss_pred CCCCCCCCCHHHHHHHHHhhc-C--CeeEEEE
Q 028588 148 SHIEPGGLSFRDVLNILHNLQ-A--DVVAADV 176 (207)
Q Consensus 148 ~~p~pgGl~~~e~~~~l~~i~-~--~vvg~di 176 (207)
......|+++.++.++++.+. . +++|+..
T Consensus 165 ~~~skfG~~~~~~~~~~~~~~~~~l~l~Glh~ 196 (424)
T 7odc_A 165 RLSVKFGATLKTSRLLLERAKELNIDVIGVSF 196 (424)
T ss_dssp ----CCCBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 124678999999999888763 2 5666654
No 19
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=49.60 E-value=2.5 Score=33.28 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcceEEEcCCc---cchHHHHHHHHHhcCCCeEEEEEccCCC
Q 028588 5 TESVKLVMEEDPLHPLVLGGDH---SISFPVIRAVSEKLGGPVDVLHLDAHPD 54 (207)
Q Consensus 5 ~~~v~~~~~~~~~~pi~iGGdh---s~s~~~~~~~~~~~~~~~~vI~~DAH~D 54 (207)
.+.+..-++..+ -||++||+| |-|+- |+.....++..++.||-|.-
T Consensus 126 ~~~l~~hF~~~g-~PI~igG~~~ghS~tIv---Gve~~~~g~~~lLIlDPhy~ 174 (218)
T 2z84_A 126 EERLYSHFTTGG-GPVMVGGDADAQSKALL---GICEGPGSEVYVLILDPHYW 174 (218)
T ss_dssp HHHHHHHHHTTC-CCEEECCTTTSCCEEEE---EEEECTTCCEEEEEECCCCC
T ss_pred HHHHHHHHhcCC-CCEEECCCcccccceEE---eEEecCCCcEEEEEECCCcC
Confidence 344555555444 699999985 33332 22212235789999997753
No 20
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=45.33 E-value=1.4e+02 Score=25.16 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=52.5
Q ss_pred CcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCC---CCCCCCCCC
Q 028588 80 RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGV---SHIEPGGLS 156 (207)
Q Consensus 80 ~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~---~~p~pgGl~ 156 (207)
.+++..|. ...+++.+.+.++++..++.+.....+.+-+........-+|+|-+|.+.= +.--+.. +.....|++
T Consensus 103 ~~i~~~g~-~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~-~~~~~~~~tg~~~sRfG~~ 180 (425)
T 2qgh_A 103 YRIVFSGV-GKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNID-AKTHPYISTGLKENKFGVG 180 (425)
T ss_dssp GGEEECCT-TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCC-CCSCGGGBCCSTTSSSSBC
T ss_pred hHEEEcCC-CCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCCCcccccCCCCCCCcCC
Confidence 45555553 346778888888888656665544322221111111122467888776642 1111111 125778999
Q ss_pred HHHHHHHHHhhc--C--CeeEEEE
Q 028588 157 FRDVLNILHNLQ--A--DVVAADV 176 (207)
Q Consensus 157 ~~e~~~~l~~i~--~--~vvg~di 176 (207)
++|+.++++.+. + +++|+-.
T Consensus 181 ~~e~~~l~~~~~~~~~l~l~Gl~~ 204 (425)
T 2qgh_A 181 EKEALEMFLWAKKSAFLEPVSVHF 204 (425)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEEEEE
Confidence 999998888773 2 4556554
No 21
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=44.20 E-value=96 Score=25.37 Aligned_cols=88 Identities=9% Similarity=0.090 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCcceEEEcC--CccchHHHHHHHHHhcCCCeEEEEEccCCCCCCCCCCCccCCccHHHHHHhcCCCC
Q 028588 3 VITESVKLVMEEDPLHPLVLGG--DHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYAR 80 (207)
Q Consensus 3 ~i~~~v~~~~~~~~~~pi~iGG--dhs~s~~~~~~~~~~~~~~~~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~~~ 80 (207)
..++++++.++. |. -|.+|| -|......++++.++..+++.++...+-. ....+++.+..+
T Consensus 5 sa~eAv~~~Ikd-G~-tV~~gGf~~~g~P~~li~aL~~~~~~dLtlv~~~~g~---------------~~~~l~~~g~v~ 67 (317)
T 1poi_A 5 TLKDAIAKYVHS-GD-HIALGGFTTDRKPYAAVFEILRQGITDLTGLGGAAGG---------------DWDMLIGNGRVK 67 (317)
T ss_dssp CHHHHHHHHCCT-TC-EEEECSBTTBSCCHHHHHHHHHTTCCCEEEECSEECH---------------HHHHHHHTTCEE
T ss_pred CHHHHHHhhCCC-CC-EEEECCccccCcHHHHHHHHHhCCCCCEEEEEECCCC---------------ChHHHhccCcee
Confidence 357788445663 55 678898 68999999999998654567776332111 113455555555
Q ss_pred cEE--EEcccCCC---hhHHHHHHHcCceEEE
Q 028588 81 RLL--QVGIRSIT---KEGREQGKRFGVEQYE 107 (207)
Q Consensus 81 ~vv--~iG~r~~~---~~~~~~~~~~~~~~~~ 107 (207)
+++ ++|...+. +..++.+.+..+.++.
T Consensus 68 ~~~~s~~~~~~~~~~~~~~r~~~~~G~ie~~~ 99 (317)
T 1poi_A 68 AYINCYTANSGVTNVSRRFRKWFEAGKLTMED 99 (317)
T ss_dssp EEEESEECBTTTBSSCHHHHHHHHHTCSEEEE
T ss_pred EEEcccccccccccCChHHHHHHHCCCceEEe
Confidence 554 24544433 5566666666565543
No 22
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=41.87 E-value=1.6e+02 Score=25.03 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=59.1
Q ss_pred HHHHHhcCC-CCcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCC--C
Q 028588 70 FARIMEGGY-ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAP--G 146 (207)
Q Consensus 70 ~~~~~~~~~-~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~p--g 146 (207)
+..+.+.|. +.+++..|. ..++++.+.+.++|+..+..+.....+.+.+........-+|+|-++.++=..+ .+ .
T Consensus 108 ~~~~~~~G~~~~~I~~~g~-~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRVn~~~~~~~-~~~i~ 185 (443)
T 3vab_A 108 IRRALAAGIPANRIVFSGV-GKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKT-HAKIS 185 (443)
T ss_dssp HHHHHHTTCCGGGEEEECT-TCCHHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEECCBCTTT-CCBC-
T ss_pred HHHHHHcCCChhhEEEcCC-CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCC-Ccccc
Confidence 333444443 356777764 246778888888898766655444322222211111123568888887742111 11 1
Q ss_pred CC-CCCCCCCCHHHHHHHHHhhc--C--CeeEEEEe
Q 028588 147 VS-HIEPGGLSFRDVLNILHNLQ--A--DVVAADVV 177 (207)
Q Consensus 147 ~~-~p~pgGl~~~e~~~~l~~i~--~--~vvg~di~ 177 (207)
|+ .....|+++.++.++++.+. + +++|+..-
T Consensus 186 tG~~~sRfGi~~~e~~~ll~~~~~~~~l~l~Glh~H 221 (443)
T 3vab_A 186 TGKSENKFGIPRDKARAAYARAASLPGLNVVGIDMH 221 (443)
T ss_dssp --CCCCSSSEEGGGHHHHHHHHHHSTTEEEEEEECC
T ss_pred cCCCCCCCcCCHHHHHHHHHHHhhCCCceEEEEEEe
Confidence 22 24788999999988888763 2 46666553
No 23
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=41.83 E-value=10 Score=27.97 Aligned_cols=74 Identities=19% Similarity=0.084 Sum_probs=44.4
Q ss_pred EEEEeccCCCCCCCCCCC-CC-CCCCCCHHHHHHHHHhhcCCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 028588 131 YISVDVDCLDPAFAPGVS-HI-EPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 205 (207)
Q Consensus 131 ylsiDiDvldp~~~pg~~-~p-~pgGl~~~e~~~~l~~i~~~vvg~di~E~~P~~d~~~~~t~~~aa~li~~~~~~~ 205 (207)
|-.||+|.+||..++--. .| .+.|-...|+..+|+. +...-++-.+=-+|++...+..+-..+.+++.+.+.+.
T Consensus 11 fR~iDVD~~d~d~f~~~~~~~~~~~~p~~~qv~~lL~~-g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~si 86 (151)
T 1k8k_G 11 FRKVDVDEYDENKFVDEDDGGDGQAGPDEGEVDSCLRQ-GNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF 86 (151)
T ss_dssp GGTSCGGGGCTTSCCCCCCC----CCCCHHHHHHHHHT-TCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHS
T ss_pred CeecccccCCcccCChhhccCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 567899999998775431 12 2335678888888874 11111122222356676544467777788888877654
No 24
>3pv9_D Putative uncharacterized protein PH1245; crispr, crispr-associated CAS1, metallonuclease, DNAse, PROK system, immune system, nuclease; 2.85A {Pyrococcus horikoshii}
Probab=41.58 E-value=22 Score=29.36 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=28.4
Q ss_pred eEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCC
Q 028588 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPD 54 (207)
Q Consensus 19 pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D 54 (207)
-|+++|..++|-++++.+.+. .+.|+|+|.+.-
T Consensus 39 ~I~l~g~v~is~~~l~~l~~~---gi~v~f~~~~G~ 71 (322)
T 3pv9_D 39 DIYIYGHVNITSQALHYIAQK---GILIHFFNHYGY 71 (322)
T ss_dssp EEEECSCEEECHHHHHHHHHT---TCEEEEECSSSC
T ss_pred EEEEeCCCCcCHHHHHHHHHC---CCeEEEECCCCe
Confidence 577888999999999999874 699999998753
No 25
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system, structural genomics, protein structure initiative; 2.70A {Thermotoga maritima}
Probab=41.17 E-value=19 Score=29.74 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=28.1
Q ss_pred eEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCC
Q 028588 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHP 53 (207)
Q Consensus 19 pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~ 53 (207)
-|+++|..++|-++++.+.+. .+.|+|+|.+.
T Consensus 37 ~I~l~g~v~is~~~l~~l~~~---gi~v~f~~~~G 68 (319)
T 3lfx_A 37 DIKVFGEVDLNKRFLEFLSQK---RIPIHFFNREG 68 (319)
T ss_dssp EEEECSCEEEEHHHHHHHHHT---TCCEEEECTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHC---CCeEEEECCCC
Confidence 578889999999999999874 68999999876
No 26
>3god_A CAS1; crispr, metallonuclease, DNAse, prokaryotic immune system, immune system; 2.17A {Pseudomonas aeruginosa}
Probab=40.64 E-value=23 Score=29.40 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=28.2
Q ss_pred eEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCC
Q 028588 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHP 53 (207)
Q Consensus 19 pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~ 53 (207)
-|++||..++|.++++.+.+. .+.|+|++.+.
T Consensus 61 ~I~l~g~v~iT~~am~~la~~---gI~V~f~~~~G 92 (328)
T 3god_A 61 SLLLGTGTSITQAAMRELARA---GVLVGFCGGGG 92 (328)
T ss_dssp EEEECTTEEEEHHHHHHHHHT---TCEEEEECSTT
T ss_pred EEEEeCCccCCHHHHHHHHHC---CCEEEEECCCC
Confidence 578999999999999999874 69999999775
No 27
>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=38.68 E-value=23 Score=29.13 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=28.1
Q ss_pred eEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCC
Q 028588 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHP 53 (207)
Q Consensus 19 pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~ 53 (207)
-|+++|..++|-++++.+.+. .+.|+|+|.+.
T Consensus 37 ~I~l~~~~~is~~~l~~l~~~---gi~v~f~~~~G 68 (315)
T 2yzs_A 37 EIFVFAELSLNTKLLNFLASK---GIPLHFFNYYG 68 (315)
T ss_dssp EEEECSCEEEEHHHHHHHHHH---TCCEEEECTTS
T ss_pred EEEEeCCCcCCHHHHHHHHHC---CCeEEEECCCC
Confidence 578889999999999999975 58899999865
No 28
>3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA recombination, DNA repair, IM system; 1.95A {Escherichia coli}
Probab=38.14 E-value=24 Score=29.03 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=28.4
Q ss_pred eEEEcCCccchHHHHHHHHHhcCCCeEEEEEccCCC
Q 028588 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPD 54 (207)
Q Consensus 19 pi~iGGdhs~s~~~~~~~~~~~~~~~~vI~~DAH~D 54 (207)
-|+++|..++|.++++.+.+. .+.|+|+|.+.-
T Consensus 51 ~I~l~g~v~iS~~al~~la~~---gI~v~f~~~~G~ 83 (305)
T 3nkd_A 51 CIMLEPGTRVSHAAVRLAAQV---GTLLVWVGEAGV 83 (305)
T ss_dssp EEEECTTEEECHHHHHHHHHT---TCEEEEESGGGS
T ss_pred EEEEeCCccCCHHHHHHHHHC---CCeEEEECCCCc
Confidence 578888899999999999874 699999997654
No 29
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=36.50 E-value=68 Score=24.56 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEc
Q 028588 6 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLD 50 (207)
Q Consensus 6 ~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~D 50 (207)
+.++.++++.+..-.++..+-..+.++++++.+.- ++++.||-||
T Consensus 165 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 165 TETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 34444444332223334444444555555554431 2345555555
No 30
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=36.14 E-value=10 Score=28.07 Aligned_cols=74 Identities=5% Similarity=-0.016 Sum_probs=27.6
Q ss_pred EEEEeccCCCCCCCCCC-CCC-CCCCCC---------HHHHHHHHHhhcCCeeEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 028588 131 YISVDVDCLDPAFAPGV-SHI-EPGGLS---------FRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVR 199 (207)
Q Consensus 131 ylsiDiDvldp~~~pg~-~~p-~pgGl~---------~~e~~~~l~~i~~~vvg~di~E~~P~~d~~~~~t~~~aa~li~ 199 (207)
|-.||+|.+||..++-- -.| .+.|.. ..|+..+++. +...-++-.+=-+|++...++.+-..+.+++.
T Consensus 3 ~R~iDID~~d~d~~~~e~l~~~~~~~~~e~~~~~~~~~~qvr~lL~~-g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~Vl 81 (152)
T 3dwl_G 3 FRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQT-GNALQGLKTLLSYVPYGNDVQEVRTQYLNAFV 81 (152)
T ss_dssp -----------------------------CCCGGGGTHHHHHHHHHH-SCCHHHHHHHTSSCCCSCSCHHHHHHHHHHHH
T ss_pred CeecccccCCcccCchhhccCCCCCCHHHHHhhhhhhHHHHHHHHHC-CCHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 56789999999853211 112 122222 4677777763 11222222232357776544567777788888
Q ss_pred HHHHHh
Q 028588 200 ELTAKI 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
+.+.+.
T Consensus 82 ~vL~si 87 (152)
T 3dwl_G 82 DVLSNI 87 (152)
T ss_dssp HHHHTS
T ss_pred HHHHHc
Confidence 877654
No 31
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=35.41 E-value=65 Score=25.07 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEccC
Q 028588 5 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDAH 52 (207)
Q Consensus 5 ~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DAH 52 (207)
.+.++.++++.+..--++..+-..+.++++++.+.- +++++||-||..
T Consensus 175 ~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~ 225 (294)
T 3qk7_A 175 YLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGL 225 (294)
T ss_dssp HHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCS
T ss_pred HHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCc
Confidence 345555555433333444555556666666666541 345666666643
No 32
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=34.59 E-value=21 Score=22.22 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=7.8
Q ss_pred CcceEEEcCCccch
Q 028588 16 PLHPLVLGGDHSIS 29 (207)
Q Consensus 16 ~~~pi~iGGdhs~s 29 (207)
..+-+.+||+||.|
T Consensus 17 ~rvAv~vg~ehSFt 30 (71)
T 1ycy_A 17 HKVAVSVGGDHSFT 30 (71)
T ss_dssp SEEEEEEC----CE
T ss_pred cEEEEEecCcceee
Confidence 46788999999976
No 33
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=33.84 E-value=82 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=12.6
Q ss_pred HHHHHhcCCCCcEEEEcccCC
Q 028588 70 FARIMEGGYARRLLQVGIRSI 90 (207)
Q Consensus 70 ~~~~~~~~~~~~vv~iG~r~~ 90 (207)
++.+.+.|.++++..+|.-..
T Consensus 203 ~~al~~~g~p~di~vig~d~~ 223 (276)
T 3ksm_A 203 LVAIRQSGMSKQFGFIGFDQT 223 (276)
T ss_dssp HHHHHHTTCTTSSEEEEESCC
T ss_pred HHHHHHcCCCCCeEEEEeCCC
Confidence 344444555677888887543
No 34
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=33.56 E-value=2.3e+02 Score=24.32 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=54.8
Q ss_pred CcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCHHH
Q 028588 80 RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 159 (207)
Q Consensus 80 ~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl~~~e 159 (207)
.+++.-|. ..++++.+.+.++|+..+..+.... ++.+......-+|+|-+|.+.- ..++ ......|+++.+
T Consensus 116 ~~iv~~g~-~k~~~ei~~a~~~gv~~~~vds~~e----l~~l~~~~~~~~V~lRvn~g~~---~~~~-~~~~RfG~~~~~ 186 (471)
T 2oo0_A 116 ERIIYANP-CKQVSQIKYAANNGVQMMTFDSEVE----LMKVARAHPKAKLVLRIATDDS---KAVC-RLSVKFGATLRT 186 (471)
T ss_dssp GGEEECCS-SCCHHHHHHHHHTTCCEEEECSHHH----HHHHHHHCTTCEEEEEECCCCT---TSSB-CCTTTSCBCHHH
T ss_pred hhEEEeCC-CCCHHHHHHHHHCCCCEEEECCHHH----HHHHHHhCCCCeEEEEEcCCCC---CCCC-CCCCCCCCCHHH
Confidence 45655453 3467888888888887565554432 2222211123568888887642 1111 235788999999
Q ss_pred HHHHHHhhc--C-CeeEEEEeeec
Q 028588 160 VLNILHNLQ--A-DVVAADVVEFN 180 (207)
Q Consensus 160 ~~~~l~~i~--~-~vvg~di~E~~ 180 (207)
+.++++.+. . +++|+..---+
T Consensus 187 ~~~~~~~~~~~~l~l~Glh~H~gs 210 (471)
T 2oo0_A 187 SRLLLERAKELNIDVVGVSFHVGS 210 (471)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCB
T ss_pred HHHHHHHHHhCCCcEEEEEEeCCC
Confidence 888888763 2 56777665433
No 35
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=33.40 E-value=32 Score=29.67 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCcce---EEEcCCccchH---------------HHHHHHHHhcCCCeEEEEEccCC
Q 028588 3 VITESVKLVMEEDPLHP---LVLGGDHSISF---------------PVIRAVSEKLGGPVDVLHLDAHP 53 (207)
Q Consensus 3 ~i~~~v~~~~~~~~~~p---i~iGGdhs~s~---------------~~~~~~~~~~~~~~~vI~~DAH~ 53 (207)
.+...|..+.++- .+| |+|++||.-++ -.++...+ ..++-|.||+-.
T Consensus 63 ~~~~~v~~~A~~~-~vP~~~VaLHlDHg~~~~w~~~~~~~am~~a~e~i~~aI~---aGFtSVMiD~S~ 127 (420)
T 2fiq_A 63 DFREFVFAIADKV-GFARERIILGGDHLGPNCWQQENVDAAMEKSVELVKAYVR---AGFSKIHLDASM 127 (420)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEEEESSGGGTTSBHHHHHHHHHHHHHHHHH---TTCCEEEECCCS
T ss_pred HHHHHHHHHHHHc-CcCcceEEEECCCCCCccccccchhhhhhhHHHHHHHHHH---hCCCEEEECCCC
Confidence 4455666666653 467 99999999887 55554333 257889999765
No 36
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=33.27 E-value=75 Score=25.29 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEcc
Q 028588 5 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDA 51 (207)
Q Consensus 5 ~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DA 51 (207)
.+.++.++++++..-.++..+-..+.++++++.+.- +++++||-||.
T Consensus 230 ~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vvg~D~ 279 (338)
T 3dbi_A 230 AEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDD 279 (338)
T ss_dssp HHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred HHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 345555555433333444444556666666666542 24566666663
No 37
>1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A {Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A
Probab=32.15 E-value=81 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCcceEEEcCCccc--hHHHHHHH
Q 028588 3 VITESVKLVMEEDPLHPLVLGGDHSI--SFPVIRAV 36 (207)
Q Consensus 3 ~i~~~v~~~~~~~~~~pi~iGGdhs~--s~~~~~~~ 36 (207)
.+.+.+++++++.+..++++-| ||+ +.+.+.++
T Consensus 122 ~~~~~l~~~~~~~~~~~i~vtG-HSLGGalA~l~a~ 156 (269)
T 1lgy_A 122 DYFPVVQEQLTAHPTYKVIVTG-HSLGGAQALLAGM 156 (269)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEE-ETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEec-cChHHHHHHHHHH
Confidence 4556677777665667888888 988 34444443
No 38
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.06 E-value=74 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=18.4
Q ss_pred HHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEc
Q 028588 7 SVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLD 50 (207)
Q Consensus 7 ~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~D 50 (207)
.++.++++.+..--++..+-..+.++++++.+.- +++++||-||
T Consensus 175 ~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 175 GMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 3444444322222333333344455555554431 2345555555
No 39
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=31.64 E-value=77 Score=25.58 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=8.9
Q ss_pred CCcEEEEcccCCC
Q 028588 79 ARRLLQVGIRSIT 91 (207)
Q Consensus 79 ~~~vv~iG~r~~~ 91 (207)
|+++..+|.-+..
T Consensus 295 P~disvigfD~~~ 307 (366)
T 3h5t_A 295 PADLSLTGFDGTH 307 (366)
T ss_dssp TTTCEEEEEECCH
T ss_pred CCceEEEEECCCh
Confidence 5778788876643
No 40
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=31.54 E-value=2.2e+02 Score=24.30 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=54.2
Q ss_pred CcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCC---CCCCCCCCCCCCCCCC
Q 028588 80 RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLD---PAFAPGVSHIEPGGLS 156 (207)
Q Consensus 80 ~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvld---p~~~pg~~~p~pgGl~ 156 (207)
.+++..|. ..++++.+.+.++|+..+..+.+...+.+.+........-+|+|-+|.++-. +...+| +.....|++
T Consensus 111 ~~I~~~g~-~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~~~-~~~srfG~~ 188 (467)
T 2o0t_A 111 ERITLHGN-NKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTA-HEDQKFGLS 188 (467)
T ss_dssp GGEEECCT-TCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEES-SCCSSSSEE
T ss_pred ccEEEeCC-CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCCeEEEEEcCCCCCCCCcccccC-CCCCCcCCc
Confidence 67877774 2456778888888886566655443222222111111234688888876311 011111 225678888
Q ss_pred H--HHHHHHHHhhc--C--CeeEEEEe
Q 028588 157 F--RDVLNILHNLQ--A--DVVAADVV 177 (207)
Q Consensus 157 ~--~e~~~~l~~i~--~--~vvg~di~ 177 (207)
+ .|+.++++.+. . +++|+...
T Consensus 189 ~~~~e~~~~~~~~~~~~~l~l~Gl~~H 215 (467)
T 2o0t_A 189 VASGAAMAAVRRVFATDHLRLVGLHSH 215 (467)
T ss_dssp TTTTHHHHHHHHHHHCSSEEEEEEECC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 6 57888777762 2 67777654
No 41
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=31.30 E-value=70 Score=24.62 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=6.2
Q ss_pred CCcEEEEccc
Q 028588 79 ARRLLQVGIR 88 (207)
Q Consensus 79 ~~~vv~iG~r 88 (207)
|+++..+|.-
T Consensus 215 P~di~vig~d 224 (289)
T 3g85_A 215 PDDIEIVAIG 224 (289)
T ss_dssp TTTCEEEEEE
T ss_pred CCceEEEEeC
Confidence 4566666665
No 42
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=30.82 E-value=2.5e+02 Score=23.86 Aligned_cols=103 Identities=8% Similarity=0.031 Sum_probs=56.9
Q ss_pred HHHHHHhcCCC-CcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCC
Q 028588 69 SFARIMEGGYA-RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGV 147 (207)
Q Consensus 69 ~~~~~~~~~~~-~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~ 147 (207)
-+..+.+.|.. .+++.-|. ..++++.+.+.++|+..+..+.....+ .+.++ ...-+++|-+|.++-. + ++
T Consensus 94 E~~~~~~aG~~~~~iv~~g~-~k~~~ei~~a~~~gv~~~~vds~~el~-~l~~~---~~~~~v~lRin~g~~~-~--~~- 164 (448)
T 3btn_A 94 EMALVQELGVSPENIIFTSP-CKQVSQIKYAAKVGVNIMTCDNEIELK-KIARN---HPNAKVLLHIATEDNI-G--GE- 164 (448)
T ss_dssp HHHHHHHTTCCGGGEEECCS-SCCHHHHHHHHHHTCCEEEECSHHHHH-HHHHH---CTTCEEEEEBCCCC---------
T ss_pred HHHHHHHcCCChhhEEEcCC-CCCHHHHHHHHHcCCCEEEeCCHHHHH-HHHHh---CCCCeEEEEEecCCCc-c--CC-
Confidence 34444444433 45665453 346788888888898655555443222 22222 1234688888776421 1 11
Q ss_pred CCCCCCCCCHHHHHHHHHhhc--C-CeeEEEEeeec
Q 028588 148 SHIEPGGLSFRDVLNILHNLQ--A-DVVAADVVEFN 180 (207)
Q Consensus 148 ~~p~pgGl~~~e~~~~l~~i~--~-~vvg~di~E~~ 180 (207)
......|+++.++.++++.+. . +++|+..---+
T Consensus 165 ~~~~RfG~~~~~~~~~~~~~~~~~l~~~Gl~~H~gs 200 (448)
T 3btn_A 165 DGNMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSS 200 (448)
T ss_dssp ---CCCCBCHHHHHHHHHHHHHHTCEEEEEECCCCT
T ss_pred CCCCcCCCCHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 234778999999888887663 2 56676654333
No 43
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.73 E-value=83 Score=24.16 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=6.4
Q ss_pred CCcEEEEcccC
Q 028588 79 ARRLLQVGIRS 89 (207)
Q Consensus 79 ~~~vv~iG~r~ 89 (207)
|+++..+|..+
T Consensus 219 P~di~vig~d~ 229 (292)
T 3k4h_A 219 PKDVSIVSFNN 229 (292)
T ss_dssp TTTCEEEEESC
T ss_pred CCeEEEEEecC
Confidence 35666666654
No 44
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.63 E-value=1e+02 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=14.3
Q ss_pred HHHHHhcCC--CCcEEEEcccCCCh
Q 028588 70 FARIMEGGY--ARRLLQVGIRSITK 92 (207)
Q Consensus 70 ~~~~~~~~~--~~~vv~iG~r~~~~ 92 (207)
++.+.+.|. |+++..+|.-+...
T Consensus 196 ~~al~~~g~~vP~di~vvg~d~~~~ 220 (276)
T 2h0a_A 196 LEEAVRLGLTPGRDVRVLGFDGHPF 220 (276)
T ss_dssp HHHHHTTSCTTTTSEEEEEESCCTH
T ss_pred HHHHHHcCCCCCCCeEEEEeCCCch
Confidence 333444443 58899999877653
No 45
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=30.55 E-value=96 Score=23.64 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=6.5
Q ss_pred CcEEEEcccCC
Q 028588 80 RRLLQVGIRSI 90 (207)
Q Consensus 80 ~~vv~iG~r~~ 90 (207)
+++..+|.-+.
T Consensus 207 ~dv~vvGfD~~ 217 (271)
T 2dri_A 207 SDVMVVGFDGT 217 (271)
T ss_dssp CSCEEEEEECC
T ss_pred CCcEEEEecCC
Confidence 56666666543
No 46
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=30.01 E-value=56 Score=24.83 Aligned_cols=30 Identities=3% Similarity=0.017 Sum_probs=13.4
Q ss_pred EcCCccchHHHHHHHHHhc--CCCeEEEEEcc
Q 028588 22 LGGDHSISFPVIRAVSEKL--GGPVDVLHLDA 51 (207)
Q Consensus 22 iGGdhs~s~~~~~~~~~~~--~~~~~vI~~DA 51 (207)
+..+-..+.++++++.+.- ++++.|+-||.
T Consensus 185 ~~~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 185 VTTSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp EESSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred EEeCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 3333344455555554431 23455555553
No 47
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.05 E-value=88 Score=24.07 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEcc
Q 028588 7 SVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDA 51 (207)
Q Consensus 7 ~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DA 51 (207)
.++.++++.+..-.++..+-..+.++++++.+.- ++++.||-||.
T Consensus 176 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 223 (291)
T 3egc_A 176 GAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDN 223 (291)
T ss_dssp HHHHHHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESC
T ss_pred HHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEecC
Confidence 3444444322333334444444555555555431 23455555553
No 48
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=29.05 E-value=22 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHhhcCCeeEEEEeeecCCCCC
Q 028588 153 GGLSFRDVLNILHNLQADVVAADVVEFNPQRDT 185 (207)
Q Consensus 153 gGl~~~e~~~~l~~i~~~vvg~di~E~~P~~d~ 185 (207)
|=++.+|++++.+.. |+|++|++|.-++
T Consensus 27 Gv~~~~eAl~~A~e~-----~LDLVevsp~a~P 54 (78)
T 1tif_A 27 GIKSKQEALEIAARR-----NLDLVLVAPNAKP 54 (78)
T ss_dssp EEEEHHHHHHHHHHT-----TCEEEEEETTSSS
T ss_pred CcccHHHHHHHHHHc-----CCCEEEECCCCCC
Confidence 447889999988774 7899999998553
No 49
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=28.57 E-value=55 Score=28.49 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCCcce---EEEcCCccch---------------HHHHHHHHHhcCCCeEEEEEccCCCC
Q 028588 3 VITESVKLVMEEDPLHP---LVLGGDHSIS---------------FPVIRAVSEKLGGPVDVLHLDAHPDI 55 (207)
Q Consensus 3 ~i~~~v~~~~~~~~~~p---i~iGGdhs~s---------------~~~~~~~~~~~~~~~~vI~~DAH~D~ 55 (207)
.+...|+.+.++- .+| |+|+|||.-+ +-.++..-+ ..++-|.||+-...
T Consensus 70 ~f~~~V~~~A~~~-~vPv~pV~LhlDHg~~~~w~~~~~~~am~~a~e~i~~aI~---AGFtSVMiD~S~~p 136 (450)
T 3txv_A 70 DFTRFVGAIADRI-EFPREKILLGGDHLGPNPWKHLPADEAMAKAEAMITAYAK---AGFTKLHLDTSMGC 136 (450)
T ss_dssp HHHHHHHHHHHHT-TCCGGGEEEEEEEESSGGGTTSCHHHHHHHHHHHHHHHHT---TTCCEEEECCCBCC
T ss_pred HHHHHHHHHHHHc-CcCcccEEEECCCCCCcccccccHHHHHHHHHHHHHHHHH---cCCCEEEECCCCCc
Confidence 4566777777754 456 7999999975 444444332 35888999976553
No 50
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=28.55 E-value=1.1e+02 Score=23.41 Aligned_cols=33 Identities=9% Similarity=-0.049 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCCcEEEEcccCCChhHHHHHHHcCce
Q 028588 69 SFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVE 104 (207)
Q Consensus 69 ~~~~~~~~~~~~~vv~iG~r~~~~~~~~~~~~~~~~ 104 (207)
.++.+.+.+. +++..+|.-.. +...+++. .+..
T Consensus 214 ~~~al~~~g~-~di~vig~d~~-~~~~~~~~-~~~~ 246 (304)
T 3gbv_A 214 IGEYLQQRRK-SDFSLIGYDLL-ERNVTCLK-EGTV 246 (304)
T ss_dssp HHHHHHHTTC-CSCEEEEESCC-HHHHHHHH-HTSE
T ss_pred HHHHHHHcCC-CCcEEEEeCCC-HHHHHHHH-cCce
Confidence 4444455555 78888888553 33234443 3444
No 51
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=28.35 E-value=75 Score=24.54 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=7.6
Q ss_pred CCcEEEEcccCCC
Q 028588 79 ARRLLQVGIRSIT 91 (207)
Q Consensus 79 ~~~vv~iG~r~~~ 91 (207)
|+++..+|..+..
T Consensus 215 P~di~vig~d~~~ 227 (288)
T 3gv0_A 215 GEDVDIVSKQSAE 227 (288)
T ss_dssp TTSCEEEEEESST
T ss_pred CCceEEEEecChH
Confidence 4566666665543
No 52
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.19 E-value=1e+02 Score=24.75 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=18.7
Q ss_pred HHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEcc
Q 028588 7 SVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDA 51 (207)
Q Consensus 7 ~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DA 51 (207)
.++.++++.+ . -++..+-..+.++++++.+.- ++++.||-||.
T Consensus 233 ~~~~ll~~~~-~-ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D~ 278 (348)
T 3bil_A 233 GATKLLDQGA-K-TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFDT 278 (348)
T ss_dssp HHHHHHHTTC-S-EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred HHHHHHcCCC-C-EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Confidence 3444444322 2 334444444555555554431 23455555553
No 53
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=28.08 E-value=87 Score=24.41 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=7.6
Q ss_pred CCcEEEEcccCC
Q 028588 79 ARRLLQVGIRSI 90 (207)
Q Consensus 79 ~~~vv~iG~r~~ 90 (207)
|+++..+|..+.
T Consensus 224 P~di~vig~D~~ 235 (303)
T 3kke_A 224 PEDLSIVGINTT 235 (303)
T ss_dssp TTTCEEEEESCC
T ss_pred CCceEEEEEcCh
Confidence 466777777553
No 54
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=27.82 E-value=2.5e+02 Score=23.04 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHHhcCCCCcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHh-hccCCcceEEEEEeccCCCCCCCCCCCC
Q 028588 71 ARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENL-KLGEGVKGVYISVDVDCLDPAFAPGVSH 149 (207)
Q Consensus 71 ~~~~~~~~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~vylsiDiDvldp~~~pg~~~ 149 (207)
..+.+.|...+++.+|. ..+++.+.+-+.++. +..++....+ .++++ ......-+|++-+|. |
T Consensus 74 ~~~~~~G~~~~Il~~g~--~~~~~~~~~~~~~i~-~~vds~~~l~-~l~~~a~~~~~~~~V~l~vdt---------G--- 137 (384)
T 1xfc_A 74 LALRADGITAPVLAWLH--PPGIDFGPALLADVQ-VAVSSLRQLD-ELLHAVRRTGRTATVTVKVDT---------G--- 137 (384)
T ss_dssp HHHHHTTCCSCEEECCC--CTTCCCHHHHHTTCE-EEECSHHHHH-HHHHHHHHHCCCEEEEEEBCS---------S---
T ss_pred HHHHhcCCCCCEEEEcC--CCHHHHHHHHHcCcE-EEECCHHHHH-HHHHHHHhcCCceEEEEEEEC---------C---
Confidence 33344443446777775 344555656667763 5554443222 22222 111112245555542 1
Q ss_pred CCCCCCCH---HHHHHHHHhhc--C--CeeEEEE
Q 028588 150 IEPGGLSF---RDVLNILHNLQ--A--DVVAADV 176 (207)
Q Consensus 150 p~pgGl~~---~e~~~~l~~i~--~--~vvg~di 176 (207)
....|+++ +|+.++++.+. + ++.|+-.
T Consensus 138 ~~R~G~~~~~~~~~~~~~~~i~~~~~l~l~Gl~t 171 (384)
T 1xfc_A 138 LNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMS 171 (384)
T ss_dssp CCSSSBCTTTHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CCccCCCcCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 25678888 89988888773 3 4455533
No 55
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=27.73 E-value=1e+02 Score=24.52 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEccCC
Q 028588 5 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDAHP 53 (207)
Q Consensus 5 ~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DAH~ 53 (207)
.+.++.++++.+ .--++..+-..+.++++++.+.- +++++||-||...
T Consensus 220 ~~~~~~ll~~~~-~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~~ 270 (333)
T 3jvd_A 220 EEMAQVVFNNGL-PDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYDDPE 270 (333)
T ss_dssp HHHHHHHHHTCC-CSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEESCCG
T ss_pred HHHHHHHhcCCC-CcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 445556665433 33444455556666666666542 3456666666443
No 56
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=27.07 E-value=1.1e+02 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCCcceEEEcCC-----ccchHHHHHH
Q 028588 3 VITESVKLVMEEDPLHPLVLGGD-----HSISFPVIRA 35 (207)
Q Consensus 3 ~i~~~v~~~~~~~~~~pi~iGGd-----hs~s~~~~~~ 35 (207)
.++++++.+-++.|..|+++|=+ ..+++..++.
T Consensus 90 sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~ 127 (192)
T 3dcm_X 90 YLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRR 127 (192)
T ss_dssp SHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHH
T ss_pred CHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHH
Confidence 35666666665556667766632 2455555443
No 57
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=27.03 E-value=1e+02 Score=23.81 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=5.6
Q ss_pred CCcEEEEcccC
Q 028588 79 ARRLLQVGIRS 89 (207)
Q Consensus 79 ~~~vv~iG~r~ 89 (207)
|+++..+|.-+
T Consensus 224 P~di~vvg~d~ 234 (293)
T 2iks_A 224 PSDLAIATFGD 234 (293)
T ss_dssp CSSCEEEEESC
T ss_pred CCceEEEEECC
Confidence 35555555544
No 58
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation; HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17 PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Probab=26.99 E-value=1.3e+02 Score=23.64 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCCcceEEEcCCccc--hHHHHHHHHHhc-CCCeEEEEEc
Q 028588 3 VITESVKLVMEEDPLHPLVLGGDHSI--SFPVIRAVSEKL-GGPVDVLHLD 50 (207)
Q Consensus 3 ~i~~~v~~~~~~~~~~pi~iGGdhs~--s~~~~~~~~~~~-~~~~~vI~~D 50 (207)
++.+.+++++++.+..+|++-| ||+ +.+.+.++.-.. +.++.++-|.
T Consensus 110 ~~~~~l~~~~~~~p~~~i~vtG-HSLGGalA~l~a~~l~~~~~~v~~~tFg 159 (261)
T 1uwc_A 110 QVESLVKQQASQYPDYALTVTG-HSLGASMAALTAAQLSATYDNVRLYTFG 159 (261)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEE-ETHHHHHHHHHHHHHHTTCSSEEEEEES
T ss_pred HHHHHHHHHHHHCCCceEEEEe-cCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 4556677777765567888888 988 444444443221 2345555554
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.50 E-value=41 Score=18.11 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHhc
Q 028588 1 MNVITESVKLVMEE 14 (207)
Q Consensus 1 ~~~i~~~v~~~~~~ 14 (207)
|+++++.|+.++.+
T Consensus 3 MnQLEdKvEeLl~~ 16 (34)
T 2bni_A 3 MKQIEDKLEEILSK 16 (34)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 78999999999885
No 60
>4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus}
Probab=26.44 E-value=66 Score=27.06 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=40.3
Q ss_pred HHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEec---cC------CC----C-CCCCCCC------CCCCC
Q 028588 94 GREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDV---DC------LD----P-AFAPGVS------HIEPG 153 (207)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDi---Dv------ld----p-~~~pg~~------~p~pg 153 (207)
+.++++++|.++++++++.+. .....+|.|+||= |. |. + -.+|+|. ...++
T Consensus 173 QL~~Lk~~GY~~Isl~el~~~---------~~p~K~V~LTFDDGy~d~y~A~PILkk~~~~~~~~~AT~Fvi~~~i~~~~ 243 (360)
T 4hd5_A 173 QMKHLKDNGYTLLTFERWGDI---------NKVNKPIFVTFDDGMKNNMNAFRVLQKLKDDTFKPAATEYMIVDNVDVEG 243 (360)
T ss_dssp HHHHHHHTTCEEECGGGGGGT---------TTSSSEEEEEEEECBTTHHHHHHHHHHHCCSSCCCCEEEEECGGGTTSTT
T ss_pred HHHHHHHCcCEEecHHHHhhc---------cCCCCeEEEEEeCCCCcHHHHHHHHHHhcccccccceEEEEEeccccccc
Confidence 468899999999999877432 1234689999992 21 11 1 1234432 12456
Q ss_pred CCCHHHHHHHHH
Q 028588 154 GLSFRDVLNILH 165 (207)
Q Consensus 154 Gl~~~e~~~~l~ 165 (207)
-|++.|+.++..
T Consensus 244 ~Lsw~qIrem~~ 255 (360)
T 4hd5_A 244 ALSTSEIKEMVD 255 (360)
T ss_dssp BCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 789999888876
No 61
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=26.41 E-value=1.2e+02 Score=23.15 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=6.3
Q ss_pred cEEEEcccCC
Q 028588 81 RLLQVGIRSI 90 (207)
Q Consensus 81 ~vv~iG~r~~ 90 (207)
++..+|.-+.
T Consensus 221 di~vig~d~~ 230 (293)
T 3l6u_A 221 GKIVVGIDGN 230 (293)
T ss_dssp CCEEEEEECC
T ss_pred CeEEEEecCC
Confidence 6777776543
No 62
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=26.30 E-value=80 Score=25.40 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=8.3
Q ss_pred CCcEEEEcccCC
Q 028588 79 ARRLLQVGIRSI 90 (207)
Q Consensus 79 ~~~vv~iG~r~~ 90 (207)
|+++..+|.-+.
T Consensus 277 P~disvigfD~~ 288 (355)
T 3e3m_A 277 PEQVSVVGFGNF 288 (355)
T ss_dssp TTTCEEECSSCC
T ss_pred CCceEEEEECCh
Confidence 567777777654
No 63
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.28 E-value=1e+02 Score=23.87 Aligned_cols=11 Identities=0% Similarity=0.247 Sum_probs=5.6
Q ss_pred CCcEEEEcccC
Q 028588 79 ARRLLQVGIRS 89 (207)
Q Consensus 79 ~~~vv~iG~r~ 89 (207)
|+++..+|.-+
T Consensus 219 P~di~vig~D~ 229 (295)
T 3hcw_A 219 PKDVMTATFND 229 (295)
T ss_dssp TTTEEEEEECC
T ss_pred CCceEEEEeCC
Confidence 35555555544
No 64
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.20 E-value=1.2e+02 Score=23.45 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=5.1
Q ss_pred CcEEEEcccC
Q 028588 80 RRLLQVGIRS 89 (207)
Q Consensus 80 ~~vv~iG~r~ 89 (207)
+++..+|.-+
T Consensus 217 ~di~vvg~D~ 226 (290)
T 2rgy_A 217 GDVSVIGYDD 226 (290)
T ss_dssp TTCEEEEEEC
T ss_pred CceEEEEeCC
Confidence 4555555544
No 65
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=26.16 E-value=61 Score=21.07 Aligned_cols=38 Identities=8% Similarity=0.263 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHh
Q 028588 2 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEK 39 (207)
Q Consensus 2 ~~i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~ 39 (207)
+.+...++.+.+.++..+++|-+|-.+.|+.+..+...
T Consensus 42 ~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~ 79 (99)
T 2pfu_A 42 ETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDT 79 (99)
T ss_dssp SSHHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45666677776655567888999988888887665543
No 66
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=25.92 E-value=1e+02 Score=23.39 Aligned_cols=12 Identities=0% Similarity=0.069 Sum_probs=8.6
Q ss_pred CCcEEEEcccCC
Q 028588 79 ARRLLQVGIRSI 90 (207)
Q Consensus 79 ~~~vv~iG~r~~ 90 (207)
|+++..+|.-+.
T Consensus 208 P~di~vvg~d~~ 219 (275)
T 3d8u_A 208 PTDIAIICLEGS 219 (275)
T ss_dssp TTTCEEEESSCC
T ss_pred CCceEEEecCCc
Confidence 577778887664
No 67
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.84 E-value=43 Score=18.03 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHhc
Q 028588 1 MNVITESVKLVMEE 14 (207)
Q Consensus 1 ~~~i~~~v~~~~~~ 14 (207)
|+++++.|+.++++
T Consensus 3 M~QLEdKVEeLl~~ 16 (34)
T 1uo4_A 3 MKQIEDKGEEILSK 16 (34)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 78899999998875
No 68
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.70 E-value=81 Score=25.12 Aligned_cols=46 Identities=4% Similarity=0.096 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEcc
Q 028588 6 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDA 51 (207)
Q Consensus 6 ~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DA 51 (207)
+.++.++++++..--++..+-..+.++++++.+.- +++++|+-||.
T Consensus 228 ~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvgfD~ 276 (339)
T 3h5o_A 228 DMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFND 276 (339)
T ss_dssp HHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred HHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 34444444322222333343445555555555431 23455555553
No 69
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.60 E-value=1.5e+02 Score=23.01 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=11.5
Q ss_pred HHHHhcCCCCcEEEEcccCC
Q 028588 71 ARIMEGGYARRLLQVGIRSI 90 (207)
Q Consensus 71 ~~~~~~~~~~~vv~iG~r~~ 90 (207)
+.+-+.|.+.++..+|.-..
T Consensus 199 ~al~~~G~p~dv~vvg~d~~ 218 (313)
T 2h3h_A 199 LVVKNAGKVGKVKIVCFDTT 218 (313)
T ss_dssp HHHHHTTCTTTSEEEEECCC
T ss_pred HHHHHcCCCCCeEEEEeCCC
Confidence 33444455567777777543
No 70
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.49 E-value=44 Score=17.96 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHhc
Q 028588 1 MNVITESVKLVMEE 14 (207)
Q Consensus 1 ~~~i~~~v~~~~~~ 14 (207)
|++++++|+.++.+
T Consensus 3 MnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 3 VKQLADAVEELASA 16 (34)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 78899999998885
No 71
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.07 E-value=1.3e+02 Score=23.04 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=10.2
Q ss_pred HHhcCCCCcEEEEcccCC
Q 028588 73 IMEGGYARRLLQVGIRSI 90 (207)
Q Consensus 73 ~~~~~~~~~vv~iG~r~~ 90 (207)
+-+.|. +++..+|.-+.
T Consensus 202 l~~~G~-~di~viG~D~~ 218 (283)
T 2ioy_A 202 IEAANR-QGIIVVGFDGT 218 (283)
T ss_dssp HHHTTC-CCCEEEEEECC
T ss_pred HHHCCC-CCcEEEEeCCC
Confidence 334444 67777787654
No 72
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=24.85 E-value=1.3e+02 Score=22.92 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=4.8
Q ss_pred cEEEEccc
Q 028588 81 RLLQVGIR 88 (207)
Q Consensus 81 ~vv~iG~r 88 (207)
++..+|.-
T Consensus 217 di~vvg~d 224 (291)
T 3l49_A 217 DIRTYGVD 224 (291)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEec
Confidence 66666663
No 73
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=24.74 E-value=1.3e+02 Score=23.07 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=4.7
Q ss_pred CcEEEEcccC
Q 028588 80 RRLLQVGIRS 89 (207)
Q Consensus 80 ~~vv~iG~r~ 89 (207)
+++..+|.-+
T Consensus 216 ~di~vig~d~ 225 (287)
T 3bbl_A 216 TDLAIIGFDD 225 (287)
T ss_dssp TTBEEEEESC
T ss_pred CCEEEEEECC
Confidence 4444445443
No 74
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.45 E-value=87 Score=25.01 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=6.3
Q ss_pred CCcEEEEcccCC
Q 028588 79 ARRLLQVGIRSI 90 (207)
Q Consensus 79 ~~~vv~iG~r~~ 90 (207)
|+++..+|.-+.
T Consensus 274 P~disvvg~D~~ 285 (344)
T 3kjx_A 274 PGQIGLAGFNNV 285 (344)
T ss_dssp TTTCEEECSBCC
T ss_pred CCceEEEEECCh
Confidence 355555555443
No 75
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.30 E-value=1.5e+02 Score=23.64 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEccC
Q 028588 5 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDAH 52 (207)
Q Consensus 5 ~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DAH 52 (207)
.+.++.++++.+..-.++..+-..+.++++++.+.- ++++.|+-||.-
T Consensus 193 ~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~ 243 (350)
T 3h75_A 193 YRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSS 243 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCC
T ss_pred HHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCC
Confidence 445556665443333444555556666666666542 235666666643
No 76
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.02 E-value=93 Score=24.12 Aligned_cols=7 Identities=0% Similarity=-0.168 Sum_probs=4.2
Q ss_pred cEEEEcc
Q 028588 81 RLLQVGI 87 (207)
Q Consensus 81 ~vv~iG~ 87 (207)
++..+|.
T Consensus 218 dv~vig~ 224 (297)
T 3rot_A 218 QPQVYSF 224 (297)
T ss_dssp CCEEEEE
T ss_pred ceEEEEe
Confidence 5666665
No 77
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.95 E-value=78 Score=24.33 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCcceEEEcCCccchHHHHHHHHHhc---CCCeEEEEEccC
Q 028588 6 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDAH 52 (207)
Q Consensus 6 ~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~~~~~~---~~~~~vI~~DAH 52 (207)
+.++.++++.+..--++..+-..+.++++++.+.- +++++||-||..
T Consensus 167 ~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 167 ISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp HHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred HHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 34444554322333444444555666666665431 235666666644
No 78
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.93 E-value=1.4e+02 Score=22.94 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCcceE--EEcCCccchHHHHHHHHHhcC--CCeEEEEEccCC
Q 028588 5 TESVKLVMEEDPLHPL--VLGGDHSISFPVIRAVSEKLG--GPVDVLHLDAHP 53 (207)
Q Consensus 5 ~~~v~~~~~~~~~~pi--~iGGdhs~s~~~~~~~~~~~~--~~~~vI~~DAH~ 53 (207)
.+.++.++++.+...- ++..+-..+.++++++.+.-- +++.|+=||.-.
T Consensus 183 ~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~D~~~ 235 (306)
T 8abp_A 183 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 235 (306)
T ss_dssp HHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEESSGG
T ss_pred HHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEeCcHH
Confidence 3455555654333222 555555666666666665421 256666666444
No 79
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.87 E-value=1.1e+02 Score=23.45 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=4.8
Q ss_pred CcEEEEcccC
Q 028588 80 RRLLQVGIRS 89 (207)
Q Consensus 80 ~~vv~iG~r~ 89 (207)
+++..+|..+
T Consensus 229 ~di~vvg~d~ 238 (298)
T 3tb6_A 229 EDMSIVGYDD 238 (298)
T ss_dssp TTCEEECSBC
T ss_pred CceEEEecCC
Confidence 4454555443
No 80
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.74 E-value=1.2e+02 Score=24.02 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=4.9
Q ss_pred CcEEEEcccC
Q 028588 80 RRLLQVGIRS 89 (207)
Q Consensus 80 ~~vv~iG~r~ 89 (207)
+++..+|.-+
T Consensus 266 ~disvig~D~ 275 (340)
T 1qpz_A 266 QDVSLIGYDN 275 (340)
T ss_dssp TTCEEEEEEC
T ss_pred CCeEEEeECC
Confidence 4555555544
No 81
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=23.43 E-value=1.3e+02 Score=22.87 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=6.5
Q ss_pred CCcEEEEcccCC
Q 028588 79 ARRLLQVGIRSI 90 (207)
Q Consensus 79 ~~~vv~iG~r~~ 90 (207)
|+++..+|.-+.
T Consensus 227 P~di~vvg~d~~ 238 (296)
T 3brq_A 227 PEQVSVIGFDDI 238 (296)
T ss_dssp TTTCEEEEESCC
T ss_pred CCceEEEeecCc
Confidence 355666665543
No 82
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=23.17 E-value=3.2e+02 Score=22.66 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHcCceEEEcc-------cccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCC-CHHHHHHHHHhh
Q 028588 96 EQGKRFGVEQYEMR-------TFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGL-SFRDVLNILHNL 167 (207)
Q Consensus 96 ~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl-~~~e~~~~l~~i 167 (207)
+...+.|++.+.+. +...+.+.++.++...+ ..+-|.+|.. +|+ +..+.+++++.+
T Consensus 161 ~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G-~d~~l~vDan---------------~~~~~~~~A~~~~~~L 224 (394)
T 3mqt_A 161 AKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIG-WDMDMMVDCL---------------YRWTDWQKARWTFRQL 224 (394)
T ss_dssp HHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHC-SSSEEEEECT---------------TCCSCHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhC-CCCeEEEECC---------------CCCCCHHHHHHHHHHH
Confidence 34456898888773 22223345555542223 2344566632 688 899999999988
Q ss_pred cC
Q 028588 168 QA 169 (207)
Q Consensus 168 ~~ 169 (207)
..
T Consensus 225 ~~ 226 (394)
T 3mqt_A 225 ED 226 (394)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 83
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=23.13 E-value=1.6e+02 Score=23.08 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=6.1
Q ss_pred CCCCcEEEEcccC
Q 028588 77 GYARRLLQVGIRS 89 (207)
Q Consensus 77 ~~~~~vv~iG~r~ 89 (207)
|.++++..+|.-+
T Consensus 211 Gip~dv~vig~D~ 223 (325)
T 2x7x_A 211 GREKEMIFVGIDA 223 (325)
T ss_dssp TCTTSSEEEEEEC
T ss_pred CCCCCeEEEEECC
Confidence 3344555555544
No 84
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=23.00 E-value=1.5e+02 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHHHHhcCCCCcEEEEcccCC
Q 028588 69 SFARIMEGGYARRLLQVGIRSI 90 (207)
Q Consensus 69 ~~~~~~~~~~~~~vv~iG~r~~ 90 (207)
.++.+.+.|.++++..+|.-+.
T Consensus 208 ~~~al~~~G~~~dv~vvGfD~~ 229 (288)
T 1gud_A 208 VAQAVANAGKTGKVLVVGTDGI 229 (288)
T ss_dssp HHHHHHHTTCTTTSEEEEESCC
T ss_pred HHHHHHhcCCCCCeEEEEeCCC
Confidence 3444445555567888888654
No 85
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=22.85 E-value=50 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCcceEEEcCCccchHHHHHH
Q 028588 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRA 35 (207)
Q Consensus 4 i~~~v~~~~~~~~~~pi~iGGdhs~s~~~~~~ 35 (207)
....++.+.++ |..||+.||-+..--+.+.+
T Consensus 81 a~~~i~~i~~~-gk~pIlVGGTglYi~aLl~g 111 (322)
T 3exa_A 81 ATPLITEIHER-GRLPFLVGGTGLYVNAVIHQ 111 (322)
T ss_dssp HHHHHHHHHHT-TCEEEEESCCHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcEEEEcCcHHHHHHHHcC
Confidence 45677888886 68999999966544444444
No 86
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.09 E-value=1.6e+02 Score=22.83 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.9
Q ss_pred chHHHHHHHHH
Q 028588 28 ISFPVIRAVSE 38 (207)
Q Consensus 28 ~s~~~~~~~~~ 38 (207)
.+.++++++.+
T Consensus 202 ~A~g~~~al~~ 212 (306)
T 2vk2_A 202 MVIGAIQAIKE 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 87
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.97 E-value=1.3e+02 Score=23.18 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=5.8
Q ss_pred CCcEEEEcccC
Q 028588 79 ARRLLQVGIRS 89 (207)
Q Consensus 79 ~~~vv~iG~r~ 89 (207)
|+++..+|.-.
T Consensus 222 P~di~vvg~D~ 232 (289)
T 2fep_A 222 PEDLDIIGFDN 232 (289)
T ss_dssp TTTCEEEEEEC
T ss_pred CCCeEEEEECC
Confidence 35555555544
No 88
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=21.90 E-value=3.5e+02 Score=22.60 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=52.1
Q ss_pred CcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCC--CCCCCCC-CCCCCCCC
Q 028588 80 RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDP--AFAPGVS-HIEPGGLS 156 (207)
Q Consensus 80 ~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp--~~~pg~~-~p~pgGl~ 156 (207)
.+++.-|. ..++++.+.+.+.++. +..+.... ++.+.......++.+-++.++=.. ... .|+ .....|++
T Consensus 95 ~~Iv~~g~-~k~~~~l~~a~~~~i~-~~vds~~e----l~~l~~~a~~~~v~lRv~~~~~~~~h~~i-~tG~~~~RfG~~ 167 (425)
T 1knw_A 95 DDIVFTAD-VIDQATLERVSELQIP-VNAGSVDM----LDQLGQVSPGHRVWLRVNPGFGHGHSQKT-NTGGENSKHGIW 167 (425)
T ss_dssp TSEEEEES-CCCHHHHHHHHHHTCC-EEESSHHH----HHHHHHHSTTCEEEEEEECSCCSSCTTSC-CSSSTTCCCSEE
T ss_pred CeEEEECC-CCCHHHHHHHHHcCCE-EEECCHHH----HHHHHHhhhhccEEEEECCCCCCCCCccc-ccCCCCCCCcCC
Confidence 46777674 3567888888888887 55554432 222221112247888888775211 111 122 24778999
Q ss_pred HHHHHHHHHhhcC---CeeEEEEe
Q 028588 157 FRDVLNILHNLQA---DVVAADVV 177 (207)
Q Consensus 157 ~~e~~~~l~~i~~---~vvg~di~ 177 (207)
+.|+.++++.+.. +++|+..-
T Consensus 168 ~~~~~~~~~~~~~~~l~l~Gl~~H 191 (425)
T 1knw_A 168 YTDLPAALDVIQRHHLQLVGIHMH 191 (425)
T ss_dssp GGGHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE
Confidence 8888888776632 45555443
No 89
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=21.68 E-value=1.9e+02 Score=22.66 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=15.5
Q ss_pred HHHHHhcCCCCcEEEEcccCCChhHHHHHHH
Q 028588 70 FARIMEGGYARRLLQVGIRSITKEGREQGKR 100 (207)
Q Consensus 70 ~~~~~~~~~~~~vv~iG~r~~~~~~~~~~~~ 100 (207)
++.+-+.| ..++..+|.-. .++..++++.
T Consensus 205 ~~al~~~G-~~dv~VvG~D~-~~~~~~~i~~ 233 (316)
T 1tjy_A 205 AQAAENLK-RNNLAIVGFST-PNVMRPYVQR 233 (316)
T ss_dssp HHHHHHTT-CCSCEEEEBCC-HHHHHHHHHH
T ss_pred HHHHHHcC-CCCEEEEEeCC-CHHHHHHHHC
Confidence 33344445 46788888744 3344455543
No 90
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.57 E-value=1.5e+02 Score=22.54 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=6.7
Q ss_pred CCcEEEEcccCC
Q 028588 79 ARRLLQVGIRSI 90 (207)
Q Consensus 79 ~~~vv~iG~r~~ 90 (207)
|+++..+|.-+.
T Consensus 214 P~di~vvg~d~~ 225 (289)
T 1dbq_A 214 PQDVSLIGYDNV 225 (289)
T ss_dssp TTTCEEEEEECC
T ss_pred CCceEEEeeCCc
Confidence 456666666543
No 91
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=21.20 E-value=2.4e+02 Score=23.08 Aligned_cols=92 Identities=13% Similarity=0.322 Sum_probs=50.5
Q ss_pred CccHHHHHHhcCCCCcE---EEEcccCCChhH----HHHHHHcCceEEEccc---ccchHHHHHHhhccCCcceEEEEEe
Q 028588 66 HASSFARIMEGGYARRL---LQVGIRSITKEG----REQGKRFGVEQYEMRT---FSRDRQFLENLKLGEGVKGVYISVD 135 (207)
Q Consensus 66 ~g~~~~~~~~~~~~~~v---v~iG~r~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~vylsiD 135 (207)
.|.|++++++. ...++ ..+|+. ++++ .+...+.|++.+.+.- ...+.+.++.++...+ ..+-+.+|
T Consensus 114 ~g~Pl~~llGg-~~~~v~~~~~~~~~--~~~~~~~~a~~~~~~G~~~~K~K~g~~~~~d~~~v~avR~a~g-~~~~l~vD 189 (354)
T 3jva_A 114 AQLPLYQLLGG-YDNQVITDITLGID--EPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVG-FDIKLRLD 189 (354)
T ss_dssp HTSBHHHHTTC-SCSEEECCEEECSC--CHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHC-TTSEEEEE
T ss_pred cCCcHHHHhhc-cCCeeeeeEEeCCC--CHHHHHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHHHHHcC-CCCeEEEE
Confidence 34566666654 22222 344543 3332 2334467888877641 1122344555542222 24567777
Q ss_pred ccCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCeeEEEEee
Q 028588 136 VDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVE 178 (207)
Q Consensus 136 iDvldp~~~pg~~~p~pgGl~~~e~~~~l~~i~~~vvg~di~E 178 (207)
. .+|++..+..++++.+.. .+++..|
T Consensus 190 a---------------n~~~~~~~a~~~~~~L~~--~~i~~iE 215 (354)
T 3jva_A 190 A---------------NQAWTPKDAVKAIQALAD--YQIELVE 215 (354)
T ss_dssp C---------------TTCSCHHHHHHHHHHTTT--SCEEEEE
T ss_pred C---------------CCCCCHHHHHHHHHHHHh--cCCCEEE
Confidence 4 258899999999998854 3455555
No 92
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.65 E-value=42 Score=17.95 Aligned_cols=14 Identities=14% Similarity=0.248 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHHhc
Q 028588 1 MNVITESVKLVMEE 14 (207)
Q Consensus 1 ~~~i~~~v~~~~~~ 14 (207)
|+++++.|+.++.+
T Consensus 2 MnQLEdKvEeLl~~ 15 (33)
T 3c3g_A 2 MKXIEXKLXEIXSK 15 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 67888899888875
No 93
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.31 E-value=2.1e+02 Score=21.67 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=12.3
Q ss_pred cchHHHHHHHHHhc-CCCeEEEEEccCC
Q 028588 27 SISFPVIRAVSEKL-GGPVDVLHLDAHP 53 (207)
Q Consensus 27 s~s~~~~~~~~~~~-~~~~~vI~~DAH~ 53 (207)
..+.++++++.+.- .+++.|+-||...
T Consensus 200 ~~a~g~~~al~~~G~~~di~vvg~d~~~ 227 (289)
T 3brs_A 200 YSATGAARAIKDMSLEAKVKLVCIDSSM 227 (289)
T ss_dssp HHHHHHHHHHHHTTCTTTSEEEEEESCS
T ss_pred cchHHHHHHHHhcCCCCCEEEEEECCCH
Confidence 34555555554431 1235555555443
No 94
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=20.14 E-value=3.5e+02 Score=21.88 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=45.7
Q ss_pred HHHHHhcCCCCcEEEEcccCCChhHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCC
Q 028588 70 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSH 149 (207)
Q Consensus 70 ~~~~~~~~~~~~vv~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~ 149 (207)
...+.+.+...+++.+|. ..+++.+.+.+.++ .++.++.. .++.+...... ++-+++.+|. |
T Consensus 65 ~~~~~~~G~~~~il~~~~--~~~~~~~~~~~~~i-~~~vds~~----~l~~l~~~a~~-~~~v~l~vdt-------G--- 126 (361)
T 2dy3_A 65 AMQLRDIGISQEVLCWIW--TPEQDFRAAIDRNI-DLAVISPA----HAKALIETDAE-HIRVSIKIDS-------G--- 126 (361)
T ss_dssp HHHHHHTTCCSEEEECCC--CTTSCHHHHHTTTC-EEEECSHH----HHHHHHTSCCS-CEEEEEEBCC-------S---
T ss_pred HHHHHhcCCCCCEEEECC--CCHHHHHHHHHcCC-EEEECCHH----HHHHHHHhCcc-CCEEEEEEeC-------C---
Confidence 333444443446777775 45566666667777 35544432 34444311111 4455555542 1
Q ss_pred CCCCCCCHHHHHHHHHhhc
Q 028588 150 IEPGGLSFRDVLNILHNLQ 168 (207)
Q Consensus 150 p~pgGl~~~e~~~~l~~i~ 168 (207)
....|++++|+.++++.+.
T Consensus 127 ~~R~G~~~~~~~~~~~~~~ 145 (361)
T 2dy3_A 127 LHRSGVDEQEWEGVFSALA 145 (361)
T ss_dssp SCSSSBCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 2568999999999988874
No 95
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=20.07 E-value=3.6e+02 Score=22.06 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHcCceEEEcc---cccchHHHHHHhhccCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhcC-Ce
Q 028588 96 EQGKRFGVEQYEMR---TFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DV 171 (207)
Q Consensus 96 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~vylsiDiDvldp~~~pg~~~p~pgGl~~~e~~~~l~~i~~-~v 171 (207)
..+.+.|++.+... +++...+.++.++...+ ..+-|.+|. .+|++..+..++++.+.. ++
T Consensus 154 ~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g-~d~~l~vDa---------------n~~~~~~~a~~~~~~l~~~~i 217 (379)
T 2rdx_A 154 ARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLE-PGEKAMADA---------------NQGWRVDNAIRLARATRDLDY 217 (379)
T ss_dssp HHHHHTTCCEEEEECCSCHHHHHHHHHHHGGGSC-TTCEEEEEC---------------TTCSCHHHHHHHHHHTTTSCC
T ss_pred HHHHHcCCCEEEEeccCCHHHHHHHHHHHHHhcC-CCCEEEEEC---------------CCCCCHHHHHHHHHHHHhCCe
Confidence 44456788887653 23333456666653333 235566664 268899999999998854 55
No 96
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.01 E-value=57 Score=17.45 Aligned_cols=14 Identities=14% Similarity=0.314 Sum_probs=10.9
Q ss_pred ChhHHHHHHHHHhc
Q 028588 1 MNVITESVKLVMEE 14 (207)
Q Consensus 1 ~~~i~~~v~~~~~~ 14 (207)
|+++++.|+.++.+
T Consensus 2 M~QLE~kVEeLl~~ 15 (33)
T 3m48_A 2 MAQLEAKVEELLSK 15 (33)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 77888999888875
Done!