RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028588
(207 letters)
>gnl|CDD|178224 PLN02615, PLN02615, arginase.
Length = 338
Score = 440 bits (1134), Expect = e-158
Identities = 193/207 (93%), Positives = 202/207 (97%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
MNVI+ESVKLVMEE+PL PLVLGGDHSIS+PV+RAVSEKLGGPVD+LHLDAHPDIY AFE
Sbjct: 132 MNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRAVSEKLGGPVDILHLDAHPDIYHAFE 191
Query: 61 GNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLEN 120
GNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS+DR+ LEN
Sbjct: 192 GNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLEN 251
Query: 121 LKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFN 180
LKLGEGVKGVYIS+DVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ DVV ADVVEFN
Sbjct: 252 LKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQGDVVGADVVEFN 311
Query: 181 PQRDTVDGMTAMVAAKLVRELTAKISK 207
PQRDTVDGMTAMVAAKLVRELTAK+SK
Sbjct: 312 PQRDTVDGMTAMVAAKLVRELTAKMSK 338
>gnl|CDD|212539 cd11593, Agmatinase-like_2, Agmatinase and related proteins. This
family includes known and predicted bacterial and
archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB;
EC=3.5.3.11), a binuclear manganese metalloenzyme that
belongs to the ureohydrolase superfamily. It is a key
enzyme in the synthesis of polyamine putrescine; it
catalyzes hydrolysis of agmatine to yield urea and
putrescine, the precursor for biosynthesis of higher
polyamines, spermidine, and spermine. As compared to E.
coli where two paths to putrescine exist, via
decarboxylation of an amino acid, ornithine or arginine,
a single path is found in Bacillus subtilis, where
polyamine synthesis starts with agmatine; the speE and
speB encode spermidine synthase and agmatinase,
respectively. The level of agmatinase synthesis is very
low, allowing strict control on the synthesis of
putrescine and therefore, of all polyamines, consistent
with polyamine levels in the cell. This subfamily
belongs to the ureohydrolase superfamily, which includes
arginase, agmatinase, proclavaminate amidinohydrolase,
and formiminoglutamase.
Length = 263
Score = 250 bits (641), Expect = 2e-84
Identities = 98/204 (48%), Positives = 131/204 (64%), Gaps = 9/204 (4%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
+ I E+VK ++++ P+VLGG+HSI+ +RA++EK + VLH DAH D+ D +E
Sbjct: 65 LERIEEAVKELLDDGKF-PIVLGGEHSITLGAVRALAEKYP-DLGVLHFDAHADLRDEYE 122
Query: 61 GNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLEN 120
G+KYSHA RI+E G +RL+QVGIRS +KE E K GV Y F R E
Sbjct: 123 GSKYSHACVMRRILELGGVKRLVQVGIRSGSKEEFEFAKEKGVRIYTFDDFDLGRWLDEL 182
Query: 121 LK-LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVV 177
+K L E K VYIS+D+D LDPAFAPG EPGGLS+R++L++L L ++V DVV
Sbjct: 183 IKVLPE--KPVYISIDIDVLDPAFAPGTGTPEPGGLSWRELLDLLRALAESKNIVGFDVV 240
Query: 178 EFNPQRDTVDGMTAMVAAKLVREL 201
E +P D G+TA +AAKLV EL
Sbjct: 241 ELSPDYDG--GVTAFLAAKLVYEL 262
>gnl|CDD|215946 pfam00491, Arginase, Arginase family.
Length = 268
Score = 216 bits (553), Expect = 5e-71
Identities = 91/203 (44%), Positives = 119/203 (58%), Gaps = 8/203 (3%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 63
I E+V ++ PLVLGGDHSI+ +RA++ G P+ V+H DAH D+ D + G+
Sbjct: 67 IEEAVAAILAAGKF-PLVLGGDHSITLGALRALARAYGPPLGVIHFDAHADLRDPYTGSG 125
Query: 64 YSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLE 119
YSH + F R +E G R++Q+GIRS+ E E K GV + MR LE
Sbjct: 126 YSHGTPFRRALEEGLLDPERVVQIGIRSVDNEEYEYAKELGVRVFTMRDIDERGLAAVLE 185
Query: 120 NLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVAADVVE 178
+ G VY+S D+D LDPAFAPG EPGGL+ R++L IL L +VV DVVE
Sbjct: 186 EILEALGGTPVYLSFDIDVLDPAFAPGTGTPEPGGLTPRELLAILRGLAGLNVVGLDVVE 245
Query: 179 FNPQRDTVDGMTAMVAAKLVREL 201
NP D G+TA +AAKLVREL
Sbjct: 246 VNPPYDV--GITARLAAKLVREL 266
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 202 bits (515), Expect = 3e-65
Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 16/213 (7%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
+ I E+V + E P+VLGGDHSI++P +R ++E+ G V V+H DAH D D
Sbjct: 66 FDRIREAVAEIAEAG-AIPIVLGGDHSITYPAVRGLAERHKGKVGVIHFDAHLDTRDTDG 124
Query: 61 GNKYSHASSFARIMEGGY--ARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD-- 114
G + SH + F R++E G ++Q+GIR + E E + GV MR
Sbjct: 125 GGELSHGTPFRRLLEDGNVDGENIVQIGIRGFWNSPEYVEYAREQGVTVITMRDVRERGL 184
Query: 115 ----RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD 170
+ LE +G VY+SVD+D LDPAFAPG EPGGL+ R++L+ + L A+
Sbjct: 185 DAVIEEALE--IASDGTDAVYVSVDIDVLDPAFAPGTGTPEPGGLTPRELLDAVRALGAE 242
Query: 171 --VVAADVVEFNPQRDTVDGMTAMVAAKLVREL 201
VV D+VE +P D +TA +AA+ V E
Sbjct: 243 AGVVGMDIVEVSPPLDP-TDITARLAARAVLEF 274
>gnl|CDD|223089 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase,
arginase family [Amino acid transport and metabolism].
Length = 305
Score = 179 bits (456), Expect = 4e-56
Identities = 81/214 (37%), Positives = 119/214 (55%), Gaps = 17/214 (7%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
++ I E+V ++ P+VLGGDHSI+ +RA++ K GGP+ V+ +DAH D+ +
Sbjct: 88 VDAIEEAVAELLSAGAF-PIVLGGDHSITLGTVRALARKYGGPLGVIWIDAHADLRTPYS 146
Query: 61 GNKYSHASSFARIMEGGY----ARRLLQVGIRSITK-EGREQGKRFGVEQYEMRTFSRDR 115
G+ SH + R +E G ++Q+GIRS+ E + G+ R D
Sbjct: 147 GSGNSHGTPLRRALEEGLIDGGPENVVQIGIRSVDPEERAAVARERGIRVLTARDV--DE 204
Query: 116 QFLENL------KLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL-- 167
L ++ +L VY+S+D+D LDPAFAPGV EPGGL+FR++L++L L
Sbjct: 205 LGLVDVIEEAIDELKGDGDPVYLSIDLDVLDPAFAPGVGTPEPGGLTFRELLDLLERLLK 264
Query: 168 QADVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 201
VV DVVE NP D G TA +AA+L+ EL
Sbjct: 265 SGKVVGFDVVEVNPALDI-SGRTARLAARLIAEL 297
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes
proclavaminic acid amidinohydrolase. This agmatinase
subfamily contains bacterial and fungal/metazoan
enzymes, including proclavaminic acid amidinohydrolase
(PAH, EC 3.5.3.22) and Pseudomonas aeruginosa
guanidinobutyrase (GbuA) and guanidinopropionase (GpuA).
PAH hydrolyzes amidinoproclavaminate to yield
proclavaminate and urea in clavulanic acid biosynthesis.
Clavulanic acid is an effective inhibitor of
beta-lactamases and is used in combination with
amoxicillin to prevent the beta-lactam rings of the
antibiotic from hydrolysis and, thus keeping the
antibiotic biologically active. GbuA hydrolyzes
4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea
while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into
beta-alanine and urea. Mutation studies show that
significant variations in two active site loops in these
two enzymes may be important for substrate specificity.
This subfamily belongs to the ureohydrolase superfamily,
which includes arginase, agmatinase, proclavaminate
amidinohydrolase, and formiminoglutamase.
Length = 289
Score = 159 bits (404), Expect = 2e-48
Identities = 80/211 (37%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
+ I E+ + ++ P PL LGGDHSI+ P++RA+++K G PV ++H DAH D +D +
Sbjct: 84 LEQIEEAYRAILAAGP-RPLTLGGDHSITLPILRALAKKHG-PVALVHFDAHLDTWDPYF 141
Query: 61 GNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRDRQ 116
G KY+H + F R +E G +R +Q+GIR + + E + G D
Sbjct: 142 GEKYNHGTPFRRAVEEGLLDPKRSIQIGIRGSLYSPDDLEDDRDLGFRVITADEV-DDIG 200
Query: 117 FLENLK-----LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ-AD 170
++ +G+G VY+S D+D LDPAFAPG E GGL+ R+ L IL L +
Sbjct: 201 LDAIIEKIRERVGDG--PVYLSFDIDVLDPAFAPGTGTPEIGGLTSREALEILRGLAGLN 258
Query: 171 VVAADVVEFNPQRDTVDGMTAMVAAKLVREL 201
+V ADVVE +P D +TA+ AA L EL
Sbjct: 259 IVGADVVEVSPPYDHA-EITALAAANLAFEL 288
>gnl|CDD|212537 cd11589, Agmatinase_like_1, Agmatinase and related proteins. This
family includes known and predicted bacterial agmatinase
(agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a
binuclear manganese metalloenzyme, belonging to the
ureohydrolase superfamily. It is a key enzyme in the
synthesis of polyamine putrescine; it catalyzes
hydrolysis of agmatine to yield urea and putrescine, the
precursor for biosynthesis of higher polyamines,
spermidine, and spermine. Agmatinase from Deinococcus
radiodurans shows approximately 33% of sequence identity
to human mitochondrial agmatinase. An analysis of the
evolutionary relationship among ureohydrolase
superfamily enzymes indicates the pathway involving
arginine decarboxylase and agmatinase evolved earlier
than the arginase pathway of polyamine.
Length = 274
Score = 147 bits (374), Expect = 4e-44
Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 18/207 (8%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 63
I E+V+ ++ + P+VLGGDHS++ PV+RA+ E GP+ V+ +DAH D D G +
Sbjct: 75 IEEAVRKILARGAV-PVVLGGDHSVTIPVLRALDEH--GPIHVVQIDAHLDWRDEVNGVR 131
Query: 64 YSHASSFARIMEGGYARRLLQVGIRSIT-------KEGREQGKRFGVEQYEMRTFSRDRQ 116
Y ++S R E + R+ Q+GIR + + R G + E+ +
Sbjct: 132 YGNSSPMRRASEMPHVGRITQIGIRGLGSARPEDFDDARAYGSVI-ITAREVHRIGIEA- 189
Query: 117 FLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAA 174
L+ + GE YI++D+D LDP+ APGV PGGL++ V ++LH L + VV
Sbjct: 190 VLDQIPDGE---NYYITIDIDGLDPSIAPGVGSPSPGGLTYDQVRDLLHGLAKKGRVVGF 246
Query: 175 DVVEFNPQRDTVDGMTAMVAAKLVREL 201
D+VE P D G+T+++AA+L+
Sbjct: 247 DLVEVAPAYD-PSGITSILAARLLLNF 272
>gnl|CDD|233323 TIGR01230, agmatinase, agmatinase. Members of this family include
known and predicted examples of agmatinase (agmatine
ureohydrolase). The seed includes members of archaea,
for which no definitive agmatinase sequence has yet been
made available. However, archaeal sequences are
phylogenetically close to the experimentally verified B.
subtilis sequence. One species of Halobacterium has been
demonstrated in vitro to produce agmatine from arginine,
but no putrescine from ornithine, suggesting that
arginine decarboxylase and agmatinase, rather than
arginase and ornithine decarboxylase, lead from Arg to
polyamine biosynthesis. Note: a history of early
misannotation of members of this family is detailed in
PUBMED:10931887.
Length = 275
Score = 136 bits (345), Expect = 9e-40
Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 12/186 (6%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY 78
P+ +GG+HSI+ PVIRA+++K G V+H DAH D+ D F+G +HA R++E G
Sbjct: 96 PVAIGGEHSITLPVIRAMAKKFG-KFAVVHFDAHTDLRDEFDGGTLNHACPMRRVIELG- 153
Query: 79 ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGE-GVKGVYISVDVD 137
++Q GIRS KE F E ++ R+ + + G K VY+++D+D
Sbjct: 154 -LNVVQFGIRSGFKEE----NDFAREN-NIQVLKREVDDVIAEVKQKVGDKPVYVTIDID 207
Query: 138 CLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAA 195
LDPAFAPG EPGGL+ +++N D VV DVVE P D + +TA+ AA
Sbjct: 208 VLDPAFAPGTGTPEPGGLTSDELINFFVRALKDDNVVGFDVVEVAPVYDQSE-VTALTAA 266
Query: 196 KLVREL 201
K+ E+
Sbjct: 267 KIALEM 272
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases.
Arginase-like/histone-like hydrolase superfamily
includes metal-dependent enzymes that belong to
Arginase-like amidino hydrolase family and
histone/histone-like deacetylase class I, II, IV family,
respectively. These enzymes catalyze hydrolysis of amide
bond. Arginases are known to be involved in control of
cellular levels of arginine and ornithine, in histidine
and arginine degradation and in clavulanic acid
biosynthesis. Deacetylases play a role in signal
transduction through histone and/or other protein
modification and can repress/activate transcription of a
number of different genes. They participate in different
cellular processes including cell cycle regulation, DNA
damage response, embryonic development, cytokine
signaling important for immune response and
post-translational control of the acetyl coenzyme A
synthetase. Mammalian histone deacetyases are known to
be involved in progression of different tumors. Specific
inhibitors of mammalian histone deacetylases are an
emerging class of promising novel anticancer drugs.
Length = 217
Score = 119 bits (301), Expect = 9e-34
Identities = 71/192 (36%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG-G 77
P+VLGGDHSI+ IRAV+E L + V+ +DAH D+ K +H + + E
Sbjct: 28 PVVLGGDHSIANGAIRAVAE-LHPDLGVIDVDAHHDVRTPEAFGKGNHHTPRHLLCEPLI 86
Query: 78 YARRLLQVGIRSITKEG-REQGKRF-GVEQYEMRTFSRDR--QFLENL--KLGEGVKGVY 131
++ +GIR ++ R GV + M + E + LG+ VY
Sbjct: 87 SDVHIVSIGIRGVSNGEAGGAYARKLGVVYFSMTEVDKLGLGDVFEEIVSYLGDKGDNVY 146
Query: 132 ISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAADVVEFNPQRDTVDGM 189
+SVDVD LDP+FAPG PGGLS+R+ L I + VV D+VE NP D G
Sbjct: 147 LSVDVDGLDPSFAPGTGTPGPGGLSYREGLYITERIAKTNLVVGLDIVEVNPLLDE-TGR 205
Query: 190 TAMVAAKLVREL 201
TA +AA L EL
Sbjct: 206 TARLAAALTLEL 217
>gnl|CDD|212511 cd09015, Ureohydrolase, Ureohydrolase superfamily includes
arginase, formiminoglutamase, agmatinase and
proclavaminate amidinohydrolase (PAH). This family,
also known as arginase-like amidino hydrolase family,
includes Mn-dependent enzymes: arginase (Arg, EC
3.5.3.1), formimidoylglutamase (HutG, EC 3.5.3.8 ),
agmatinase (SpeB, EC 3.5.3.11), guanidinobutyrase (Gbh,
EC=3.5.3.7), proclavaminate amidinohydrolase (PAH, EC
3.5.3.22) and related proteins. These enzymes catalyze
hydrolysis of amide bond. They are involved in control
of cellular levels of arginine and ornithine (both
involved in protein biosynthesis, and production of
creatine, polyamines, proline and nitric acid), in
histidine and arginine degradation, and in clavulanic
acid biosynthesis.
Length = 270
Score = 119 bits (301), Expect = 3e-33
Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIME--G 76
P+VLGGDHSI+ +RAV+ + V++LDAH D+ + S + F +++E
Sbjct: 82 PVVLGGDHSIAIATLRAVARH-HPDLGVINLDAHLDVNTPETDGRNSSGTPFRQLLEELQ 140
Query: 77 GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYI 132
+ ++ +G+R + E ++ GV+ M + LE L + VY+
Sbjct: 141 QSPKHIVCIGVRGLDPGPALFEYARKLGVKYVTMDEVDKLGLGGVLEQLFHYDDGDNVYL 200
Query: 133 SVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFNPQRDTVDGMT 190
SVDVD LDPA APGVS GGLS+R+ L IL V+ AD+VE NP D DG T
Sbjct: 201 SVDVDGLDPADAPGVSTPAAGGLSYREGLPILERAGKTKKVMGADIVEVNPLLD-EDGRT 259
Query: 191 AMVAAKLVREL 201
A +A +L EL
Sbjct: 260 ARLAVRLCWEL 270
>gnl|CDD|212515 cd09989, Arginase, Arginase family. This family includes arginase,
also known as arginase-like amidino hydrolase family,
and related proteins. Arginase is a binuclear
Mn-dependent metalloenzyme and catalyzes hydrolysis of
L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1),
the reaction being the fifth and final step in the urea
cycle, providing the path for the disposal of
nitrogenous compounds. Arginase controls cellular levels
of arginine and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid. In vertebrates, at least two
isozymes have been identified: type I (ARG1) cytoplasmic
or hepatic liver-type arginase and type II (ARG2)
mitochondrial or non-hepatic arginase. Point mutations
in human arginase ARG1 gene lead to hyperargininemia
with consequent mental disorders, retarded development
and early death. Hyperargininemia is associated with a
several-fold increase in the activity of the
mitochondrial arginase (ARG2), causing persistent
ureagenesis in patients. ARG2 overexpression plays a
critical role in the pathophysiology of cholesterol
mediated endothelial dysfunction. Thus, arginase is a
therapeutic target to treat asthma, erectile
dysfunction, atherosclerosis and cancer.
Length = 290
Score = 113 bits (285), Expect = 1e-30
Identities = 69/226 (30%), Positives = 100/226 (44%), Gaps = 33/226 (14%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI---YDAFE 60
+ E+V +EE PLVLGGDHSI+ I V+ + V+ +DAH DI +
Sbjct: 74 LAEAVAEALEEGRF-PLVLGGDHSIAIGTIAGVARAPYPDLGVIWIDAHADINTPETSPS 132
Query: 61 GN----------KYSHASSFARIMEGGY---ARRLLQVGIRSITKEGREQGKRFGVEQYE 107
GN H I G L+ +G+R + RE K+ G++ +
Sbjct: 133 GNIHGMPLAALLGEGHPE-LTNIGGVGPKLKPENLVYIGLRDLDPGERELIKKLGIKVFT 191
Query: 108 MRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVL 161
M + LE L G G+++S DVD LDP+ APG PGGL++R+
Sbjct: 192 MDEIDERGIGAVMEEALE--YLKPGTDGIHVSFDVDVLDPSIAPGTGTPVPGGLTYREAH 249
Query: 162 NILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 205
+L L +V+ D+VE NP D + A+L EL A
Sbjct: 250 LLLEELAETGRLVSLDIVEVNPLLDKENRT-----AELAVELIASA 290
>gnl|CDD|235011 PRK02190, PRK02190, agmatinase; Provisional.
Length = 301
Score = 111 bits (281), Expect = 5e-30
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 77
L LGGDH I+ P++RA ++ G P+ ++H DAH D + G++ H + F + G
Sbjct: 112 RMLTLGGDHFITLPLLRAHAKHFG-PLALVHFDAHTDTWAD-GGSRIDHGTMFYHAPKEG 169
Query: 78 Y--ARRLLQVGIRSITKEGREQGKRF--GVEQYEMRTFSRDRQFLENLKLGEGVKGVYIS 133
+Q+GIR+ + + G + + + +K G VY++
Sbjct: 170 LIDPAHSVQIGIRTEYDK--DNGFTVLDARQVNDRGV----DAIIAQIKQIVGDMPVYLT 223
Query: 134 VDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVAADVVEFNPQRDTVDGMTAM 192
D+DCLDPAFAPG GGL+ L IL L+ ++V DVVE P D + +TA+
Sbjct: 224 FDIDCLDPAFAPGTGTPVIGGLTSAQALKILRGLKGLNIVGMDVVEVAPAYDHAE-ITAL 282
Query: 193 VAAKLVREL 201
AA L E+
Sbjct: 283 AAATLALEM 291
>gnl|CDD|234974 PRK01722, PRK01722, formimidoylglutamase; Provisional.
Length = 320
Score = 107 bits (270), Expect = 3e-28
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGP-VDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG- 76
+VLGG H I+F V++ V +++ DAH D+ + E S + F +++E
Sbjct: 120 TIVLGGGHEIAFGSFAGVADAFPKGKVGIINFDAHHDLRN-LEDGGPSSGTPFRQLLEYC 178
Query: 77 ---GYARRLLQVGIR--SITKEGREQGKRFGVEQYEMRTFSR---DRQFLENLKLGEGVK 128
+G+ S T+ E+ K GV E + + V
Sbjct: 179 DAQIRGFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVD 238
Query: 129 GVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAADVVEFNPQRDTV 186
+Y+++D+D L A APGVS GG+ +L + + + AAD+VE+NP D
Sbjct: 239 YIYLTIDLDVLPAAEAPGVSAPAAGGVPLETLLRAIEPICRSGKLQAADLVEYNPTFD-F 297
Query: 187 DGMTAMVAAKLV 198
D MTA VAA+L+
Sbjct: 298 DDMTARVAARLI 309
>gnl|CDD|212523 cd09999, Arginase-like_1, Arginase-like amidino hydrolase family.
This family includes arginase, also known as
arginase-like amidino hydrolase family, as well as
arginase-like proteins and are found in bacteria,
archaea and eykaryotes, but does not include metazoan
arginases. Arginase is a binuclear Mn-dependent
metalloenzyme and catalyzes hydrolysis of L-arginine to
L-ornithine and urea (Arg, EC 3.5.3.1), the reaction
being the fifth and final step in the urea cycle,
providing the path for the disposal of nitrogenous
compounds. Arginase controls cellular levels of arginine
and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid.
Length = 272
Score = 102 bits (257), Expect = 9e-27
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 11 VMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGNKYSHA-- 67
+ P P+VLGGD S+S ++ K G + +L +DAHPD Y+H
Sbjct: 71 IEAALPDRPVVLGGDCSVSLAPFAYLARK-YGDLGLLWIDAHPDFNTPETSPTGYAHGMV 129
Query: 68 ---------SSFARIMEGG-YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD-RQ 116
I++ R++ G+R E E R G+ + +
Sbjct: 130 LAALLGEGDPELTAIVKPPLSPERVVLAGLRDPDDEEEEFIARLGIRVLRPEGLAASAQA 189
Query: 117 FLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAA 174
L+ LK EG+ GV+I +D+D LDPA P V EPGGLS +++ +L L AD+V
Sbjct: 190 VLDWLK-EEGLSGVWIHLDLDVLDPAIFPAVDFPEPGGLSLDELVALLAALAASADLVGL 248
Query: 175 DVVEFNPQRDTVDGMTAMVAAKLVRELT 202
+ EF+P D A+ L+ L
Sbjct: 249 TIAEFDPDLDW----DAINLKNLLDALP 272
>gnl|CDD|233322 TIGR01227, hutG, formimidoylglutamase. Formiminoglutamase, the
fourth enzyme of histidine degradation, is similar to
arginases and agmatinases. It is often encoded near
other enzymes of the histidine degredation pathway:
histidine ammonia-lyase, urocanate hydratase, and
imidazolonepropionase [Energy metabolism, Amino acids
and amines].
Length = 307
Score = 93.7 bits (233), Expect = 5e-23
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGG--PVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG 76
P++LGG HSI++ A+++ G + V++ DAH D+ A E + + F +I++
Sbjct: 114 PVILGGGHSIAYATFAALAQHYKGTTAIGVINFDAHFDL-RATEDGGPTSGTPFRQILDE 172
Query: 77 GYA--RRLLQVGIR--SITKEGREQGKRFGVEQYEMRTFS-----RDRQFLENLKLGEGV 127
+GIR S T+ + K+ GV + L + V
Sbjct: 173 CQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFL--DKV 230
Query: 128 KGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDT 185
+Y++VD+D LD A APGVS PGGL ++L ++ + A V A++ E NP D
Sbjct: 231 DHIYLTVDMDVLDAAHAPGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLDF 290
Query: 186 VDGMTAMVAAKLV 198
D TA AA+LV
Sbjct: 291 -DQRTARAAARLV 302
>gnl|CDD|212514 cd09988, Formimidoylglutamase, Formimidoylglutamase or HutE.
Formimidoylglutamase (N-formimidoyl-L-glutamate
formimidoylhydrolase; formiminoglutamase;
N-formiminoglutamate hydrolase; N-formimino-L-glutamate
formiminohydrolase; HutE; EC 3.5.3.8) is a metalloenzyme
that catalyzes hydrolysis of N-formimidoyl-L-glutamate
to L-glutamate and formamide. This enzyme is involved in
histidine degradation, requiring Mn as a cofactor while
glutathione may be required for maximal activity. In
Pseudomonas PAO1, mutation studies show that histidine
degradation proceeds via a 'four-step' pathway if the
'five-step' route is absent and vice versa; in the
four-step pathway, formiminoglutaminase (HutE, EC
3.5.3.8) directly converts formiminoglutamate (FIGLU) to
L-glutamate and formamide in a single step.
Formiminoglutamase has traditionally also been referred
to as HutG; however, formiminoglutamase is structurally
and mechanistically unrelated to N-formyl-glutamate
deformylase (also called HutG). Phylogenetic analysis
has suggested that HutE was acquired by horizontal gene
transfer from a Ralstonia-like ancestor.
Length = 262
Score = 86.8 bits (216), Expect = 8e-21
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASS---FARIME 75
P+V+GG H +++ R + + L + +++ DAH D+ S F +I+E
Sbjct: 77 PIVIGGGHDLAYGHYRGLDKALEKKIGIINFDAHFDL-----RPLEEGRHSGTPFRQILE 131
Query: 76 --GGYARRLLQVGIR--SITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVY 131
+GI+ T+E + K GV +E ++ +Y
Sbjct: 132 ECPNNLFNYSVLGIQEYYNTQELFDLAKELGVLYFEAERLLGEKILDILEAEPALRDAIY 191
Query: 132 ISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGM 189
+S+D+D + + APGVS P GLS + I V + D+ E NP D D
Sbjct: 192 LSIDLDVISSSDAPGVSAPSPNGLSPEEACAIARYAGKSGKVRSFDIAELNPSLDI-DNR 250
Query: 190 TAMVAAKLV 198
TA +AA L+
Sbjct: 251 TAKLAAYLI 259
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase. This model helps resolve
arginases from known and putative agmatinases,
formiminoglutamases, and other related proteins of
unknown specifity. The pathway from arginine to the
polyamine putrescine may procede by hydrolysis to remove
urea (arginase) followed by decarboxylation (ornithine
decarboxylase), or by decarboxylation first (arginine
decarboxylase) followed by removal of urea (agmatinase).
Length = 300
Score = 85.6 bits (212), Expect = 4e-20
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 39/230 (16%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVS-----EKLGGPVDVLHLDAHPDI--- 55
+ V V EE PLVLGGDHSI+ I + +KLG VL LDAH DI
Sbjct: 72 LAPKVYEVFEEGRF-PLVLGGDHSIAIGTISGTARVHPDKKLG----VLWLDAHADINTP 126
Query: 56 YDAFEGNKYSHASSF--------ARIMEGGY-------ARRLLQVGIRSITKEGREQGKR 100
+ GN + +F G + L+ +G+RS+ R+ K
Sbjct: 127 ETSDSGNIHGMPLAFLLGRLKSEFPDSPGLGWVAPEISPKNLVYIGLRSVDPGERKILKE 186
Query: 101 FGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 154
G++ + M + LE LK +G +++S+DVD LDP+ AP GG
Sbjct: 187 LGIKVFSMHEIDELGIGKVVEETLEYLKAEDGP--IHLSLDVDGLDPSLAPATGTPVVGG 244
Query: 155 LSFRDVLNILHNL--QADVVAADVVEFNPQRDTVD-GMTAMVAAKLVREL 201
L+FR+ L I+ L + A DVVE NP D T A ++VR L
Sbjct: 245 LTFREGLLIMEMLYESGLLTALDVVEVNPTLDIKHVNETIKTAVEIVRSL 294
>gnl|CDD|212536 cd11587, Arginase-like, Arginase types I and II and arginase-like
family. This family includes arginase, also known as
arginase-like amidino hydrolase family, and related
proteins, found in bacteria, archaea and eykaryotes.
Arginase is a binuclear Mn-dependent metalloenzyme and
catalyzes hydrolysis of L-arginine to L-ornithine and
urea (Arg, EC 3.5.3.1), the reaction being the fifth and
final step in the urea cycle, providing the path for the
disposal of nitrogenous compounds. Arginase controls
cellular levels of arginine and ornithine which are
involved in protein biosynthesis, and in production of
creatine, polyamines, proline and nitric acid. In
vertebrates, at least two isozymes have been identified:
type I cytoplasmic or hepatic liver-type arginase and
type II mitochondrial or non-hepatic arginase. Point
mutations in human arginase gene lead to
hyperargininemia with consequent mental disorders,
retarded development and early death. Arginase is a
therapeutic target to treat asthma, erectile
dysfunction, atherosclerosis and cancer.
Length = 294
Score = 78.3 bits (193), Expect = 2e-17
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDA-------FEGNKYSHASSF- 70
LVLGGDHS++ I + ++ + V+ +DAH DI G +
Sbjct: 86 SLVLGGDHSLAIGSI-SGHAQVYPDLGVIWIDAHGDINTPETSPSGNLHGMPLAFLLGEG 144
Query: 71 -ARIMEGGY--------ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENL 121
++ + G+ ++ +G+R + + K G++ Y M F D+ + +
Sbjct: 145 KGKLPDVGFSWVTPLISPENVVYIGLRDVDPGEKYIIKTLGIKYYTM--FEVDKLGIGKV 202
Query: 122 K-------LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVV 172
LG + +++S DVD LDP FAP GGLS+R+ L I+ L +
Sbjct: 203 MEETLSYLLGRKKRPIHLSFDVDGLDPVFAPATGTPVVGGLSYREGLLIMEELAETGLLS 262
Query: 173 AADVVEFNPQRDTVD---GMTAMVAAKLV 198
D+VE NP D TA A L
Sbjct: 263 GMDLVEVNPSLDKTPEEVTKTANTAVALT 291
>gnl|CDD|237499 PRK13773, PRK13773, formimidoylglutamase; Provisional.
Length = 324
Score = 68.6 bits (168), Expect = 6e-14
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 33/208 (15%)
Query: 19 PLVLGGDHSISFP----VIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIM 74
P+VLGG H +F V + + G + +L+LDAH D+ A S + F +I
Sbjct: 122 PVVLGGGHETAFGSYLGVAGSERRRPGKRLGILNLDAHFDLRAAPVP---SSGTPFRQIA 178
Query: 75 E----GGYARRLLQVGI------RSITKEGREQGKRFGV-EQYEMRTFSRDRQFLENLKL 123
G + +GI R++ RE G R+ + E+ ++ + R F+ +
Sbjct: 179 RAEEAAGRTFQYSVLGISEPNNTRALFDTARELGVRYLLDEECQVMDRAAVRVFVADFL- 237
Query: 124 GEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAA-------DV 176
V +Y+++D+D L A APGVS P L ++ + D VAA DV
Sbjct: 238 -ADVDVIYLTIDLDVLPAAVAPGVS--APAAYGVP--LEVIQAV-CDRVAASGKLALVDV 291
Query: 177 VEFNPQRDTVDGMTAMVAAKLVRELTAK 204
E NP+ D +D TA VAA+L+ +
Sbjct: 292 AELNPRFD-IDNRTARVAARLIHTIVTA 318
>gnl|CDD|237500 PRK13776, PRK13776, formimidoylglutamase; Provisional.
Length = 318
Score = 66.6 bits (163), Expect = 3e-13
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGP-----VDVLHLDAHPDIYDAFEGNKYSHASSFARI 73
P+ LGG H I++ + ++ L + +++ DAH D+ G S + F +I
Sbjct: 120 PIGLGGGHEIAWASFQGLARHLARSAPLPRIGIINFDAHFDLRKGERG---SSGTPFRQI 176
Query: 74 MEGGYAR----RLLQVGIR--SITKEGREQGKRFGV-----EQYEMRTFSRDRQFLENLK 122
E A+ +G+ S T E+ K+ GV E + +R FL++
Sbjct: 177 AEYCAAKGWPFHYCCLGVSRFSNTAALFERAKQLGVRYLSDEDMYEWSLARILAFLDDFI 236
Query: 123 LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFN 180
V +Y+++ +D L A APGVS G+S + ++ + A + AD+ E N
Sbjct: 237 AN--VDHIYLTICLDVLPAAVAPGVSAPAARGVSLWVIEPLVKRIIASGKLRLADIAELN 294
Query: 181 PQRDTVDGMTAMVAAKLVRELT 202
P D +D TA VAA+LV EL
Sbjct: 295 PPLD-IDQRTARVAARLVAELV 315
>gnl|CDD|172310 PRK13772, PRK13772, formimidoylglutamase; Provisional.
Length = 314
Score = 60.5 bits (147), Expect = 5e-11
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 18 HPLVLGGDHSI---SFPVIRAVSEKLG--GPVDVLHLDAHPDIYDAFEGNKYSHASSFAR 72
PLVLGG H + ++ +RA + G G V +++LDAH D+ + + + F +
Sbjct: 118 RPLVLGGGHEVAWGTWQGLRAHLDAQGDRGRVLIINLDAHFDLRTSRPASS---GTPFDQ 174
Query: 73 IMEGGYARRL------LQVGIRSITKEGREQGKRFG---VEQYEMRTFSRDRQFLENLKL 123
I E AR L V S T + G VE +M+ D + E L
Sbjct: 175 IAEDCAARGQPFDYACLGVSRLSNTPALFARADALGVRYVEDVDMQERHLDARLAELDAL 234
Query: 124 GEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFNP 181
+ VY+++D+D L A APGVS G+ V I+ +++A + AD+ E+NP
Sbjct: 235 LDAADHVYLTIDLDVLPAAVAPGVSAPAAYGVPLPVVEEIVLHVRASGKLRVADLAEYNP 294
Query: 182 QRDTVDGMTAMVAAKLVREL 201
Q D D TA VAA+L L
Sbjct: 295 QYD-RDRRTARVAARLAYRL 313
>gnl|CDD|172313 PRK13775, PRK13775, formimidoylglutamase; Provisional.
Length = 328
Score = 52.3 bits (125), Expect = 3e-08
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 12 MEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD--VLHLDAHPDI--YDAFEGNKYSHA 67
M + L P+VLGG H ++ + + L D V+++DAH D+ YD N
Sbjct: 119 MCDLNLKPIVLGGGHETAYGHYLGLRQSLSPSDDLAVINMDAHFDLRPYDQTGPNS---G 175
Query: 68 SSFARIMEGGYA-RRLLQVGIRSITKE----------GREQGKRF--GVEQYEM---RTF 111
+ F ++ + A +RL + + I + + +G +F G + Y+M +
Sbjct: 176 TGFRQMFDDAVADKRLFKYFVLGIQEHNNNLFLFDFVAKSKGIQFLTGQDIYQMGHQKVC 235
Query: 112 SRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD- 170
+FLE G + VY+++D+DC APGVS I+ G+ + +L ++ A
Sbjct: 236 RAIDRFLE------GQERVYLTIDMDCFSVGAAPGVSAIQSLGVDPNLAVLVLQHIAASG 289
Query: 171 -VVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 202
+V DVVE +P D +D TA +AA + L
Sbjct: 290 KLVGFDVVEVSPPHD-IDNHTANLAATFIFYLV 321
>gnl|CDD|184317 PRK13774, PRK13774, formimidoylglutamase; Provisional.
Length = 311
Score = 41.3 bits (97), Expect = 1e-04
Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 24/193 (12%)
Query: 20 LVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY 78
+LGG H I++ A + + V+++DAH D + + +SF +I+E
Sbjct: 124 FLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDTRAEQQS---TSGTSFRQILEEDE 180
Query: 79 ARRLLQVGIRSI--TKEGREQGKRFGVE-------QYEMRTFSRDR--QFLENLKLGEGV 127
L +GI T+ + K ++ + +D +F+ +
Sbjct: 181 NTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDV---- 236
Query: 128 KGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHN--LQADVVAADVVEFNPQRDT 185
+ ++ +D +D AFAPGVS GL VL + V + + E NP D
Sbjct: 237 --IMFTICMDVIDSAFAPGVSAPAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD- 293
Query: 186 VDGMTAMVAAKLV 198
D TA + A LV
Sbjct: 294 ADNRTAKLVANLV 306
>gnl|CDD|185212 PRK15312, PRK15312, antimicrobial resistance protein Mig-14;
Provisional.
Length = 298
Score = 29.0 bits (65), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 29 SFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF 59
SF + R V + GG +++ HPDI D F
Sbjct: 17 SFTLYREVFTQYGGSINM-----HPDIVDYF 42
>gnl|CDD|221683 pfam12640, UPF0489, UPF0489 domain. This family is probably an
enzyme which is related to the Arginase family.
Length = 106
Score = 27.6 bits (62), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 30 FPVIRAVSE-KLGGPVDVLHLDAHPD 54
+ RA+ KL P ++H+DAHPD
Sbjct: 12 YAWYRALGRGKLPPPPTLVHIDAHPD 37
>gnl|CDD|223491 COG0414, PanC, Panthothenate synthetase [Coenzyme metabolism].
Length = 285
Score = 27.6 bits (62), Expect = 4.9
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 16/52 (30%)
Query: 109 RTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 160
RT RD + LE VD + FAP V + P G+ V
Sbjct: 73 RTLERDLELLEK-------------EGVDIV---FAPTVEEMYPHGIERVTV 108
>gnl|CDD|173064 PRK14600, ruvA, Holliday junction DNA helicase RuvA; Provisional.
Length = 186
Score = 27.0 bits (60), Expect = 5.4
Identities = 12/54 (22%), Positives = 30/54 (55%)
Query: 154 GLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
G++++ ++IL L + + + +V + V+G+ + +++ EL K+SK
Sbjct: 80 GVNYKTAMSILSKLTPEQLFSAIVNEDKAALKVNGIGEKLINRIITELQYKVSK 133
>gnl|CDD|181428 PRK08446, PRK08446, coproporphyrinogen III oxidase; Provisional.
Length = 350
Score = 27.2 bits (61), Expect = 6.0
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 65 SHASSFARIMEGG---YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENL 121
+H S+++ +E + + + ++ K EQ + G +QYE+ F ++ Q NL
Sbjct: 180 NHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGKNYQCKHNL 239
>gnl|CDD|227059 COG4715, COG4715, Uncharacterized conserved protein [Function
unknown].
Length = 587
Score = 27.5 bits (61), Expect = 6.1
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 69 SFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEG 126
S+ ++E LL+ G S + +G R EQ + + Q L LK EG
Sbjct: 335 SYLDLVEL-----LLESGEPSKAELWLARGIRTAREQLQTT---QLPQTLAELKEEEG 384
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 26.8 bits (60), Expect = 7.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 21 VLGGDHSISFPVIRAVSEKLGGP 43
V+G DH F + A E LG
Sbjct: 164 VVGADHHGHFKRLFAALELLGYD 186
>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 26.9 bits (60), Expect = 7.9
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 11 VMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYD----AFEGNKYSH 66
V+E+ PL ++ I A SEKL + L DI + G +
Sbjct: 31 VLEQRVPEPLAADAPPALRVSAINAASEKL-----LTRLGVWQDILARRASCYHGMEVWD 85
Query: 67 ASSFARI 73
SF RI
Sbjct: 86 KDSFGRI 92
>gnl|CDD|200395 TIGR04144, archaeo_VPXXXP, archaeosortase B, VPXXXP-CTERM-specific.
Members of this protein family are found so far in
Methanohalophilus mahii DSM 5219 and Methanohalobium
evestigatum Z-7303, along with five and nine proteins,
respectively, with the VPXXXP-CTERM protein sorting
signal (TIGR04143). In these species, this boutique
system represents a second
exosortase/archaeosortase-type system.
Length = 156
Score = 26.0 bits (57), Expect = 10.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 155 LSFRDVLNILHNLQADVVAADVVEFNPQRDTVDG-----MTAMVAAKLVRELT 202
+ F+D L N+ AD +A + F Q ++VD ++A K++ E T
Sbjct: 20 IFFKDDLEFFRNITADGFSAILGLFGIQ-NSVDENIIHFENGIIALKVIDECT 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,790,920
Number of extensions: 1047455
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 55
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)