RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028588
(207 letters)
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 210 bits (536), Expect = 4e-68
Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 11/209 (5%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
++ + V VM + + P++LGG+HSI+ +RA+ + + ++ +DAH D ++
Sbjct: 100 IDTVESVVSAVMSDGKI-PIMLGGEHSITVGAVRALPKDVD----LVIVDAHSDFRSSYM 154
Query: 61 GNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFL 118
GNKY+HA R ++ R+ +GIRS+++E E V ++ +++
Sbjct: 155 GNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYI 214
Query: 119 ENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVE 178
E + + VYISVD+D +DPA+AP V EP GL+ DV ++ L V D+VE
Sbjct: 215 EEVD--RKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERLSYKAVGFDIVE 272
Query: 179 FNPQRDTVDGMTAMVAAKLVRELTAKISK 207
F+P D G T+M+AAKL++ A K
Sbjct: 273 FSPLYDN--GNTSMLAAKLLQVFIASREK 299
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II),
nysgxrc structural genomics, NEW YORK SGX research
center for struc genomics; 2.30A {Clostridium difficile}
Length = 287
Score = 199 bits (509), Expect = 2e-64
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 10/210 (4%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
+ I + ++ + + P ++GG+H ++ P +AV EK + V+H DAH D+ + +
Sbjct: 74 LKEIYQETYKIVRDSKV-PFMIGGEHLVTLPAFKAVHEKYN-DIYVIHFDAHTDLREEYN 131
Query: 61 GNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLEN 120
+K SHA+ RI + ++ Q GIRS TKE + E+ +
Sbjct: 132 NSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNM 191
Query: 121 LKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA---DVVAADVV 177
L K +Y+++D+D LD + PG EPGG+++R+ I ++ ++V D+V
Sbjct: 192 L----NGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIV 247
Query: 178 EFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
E +P DT G++ ++A K++REL IS
Sbjct: 248 ELSPDYDT-TGVSTVIACKILRELCLIISD 276
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 191 bits (487), Expect = 7e-61
Identities = 67/209 (32%), Positives = 97/209 (46%), Gaps = 11/209 (5%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 63
ITE+ + V + P+ LGGDHS+S+P++RA ++ + V+ LDAH D D K
Sbjct: 100 ITEAARQVRGRCRV-PVFLGGDHSVSYPLLRAFADV--PDLHVVQLDAHLDFTDTRNDTK 156
Query: 64 YSHASSFARIMEG-GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRDRQFLEN 120
+S++S F R E + VG+R + E + G M
Sbjct: 157 WSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDV--TADLAGV 214
Query: 121 LKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVE 178
L + VY SVDVD DPA PG S EP GL++ + IL A VV D+VE
Sbjct: 215 LAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVE 274
Query: 179 FNPQRDTVDGMTAMVAAKLVRELTAKISK 207
P D G + ++ A+LV E ++
Sbjct: 275 LAPNLDP-TGRSELLMARLVMETLCEVFD 302
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 191 bits (487), Expect = 8e-61
Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 12/206 (5%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 63
+ V V+ P V+GG + S P RA+ G V V+++D+H D+ + +
Sbjct: 101 LESKVFTVLARGAF-PFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLDVRPPLQDGR 159
Query: 64 YSHASSFARIMEGGYAR--RLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRDRQFLE 119
+ F +++E R ++ + + + + R + +
Sbjct: 160 VHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEV-RKKGAVA 218
Query: 120 NLK--LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAAD 175
L+ G K + S DVD L + PGVS GLS ++ ++ V+ D
Sbjct: 219 ALEDAFGLTGKNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMMMD 278
Query: 176 VVEFNPQRDTVDGMTAMVAAKLVREL 201
+ E NP + + + VA +
Sbjct: 279 MSELNPLVE--EYRSPRVAVYMFYHF 302
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Length = 324
Score = 188 bits (481), Expect = 8e-60
Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 13/212 (6%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
I E + +++ D L LGGDH I++P++ A ++K G P+ ++H DAH D +
Sbjct: 115 KPAIVEHARTILQSDAR-MLTLGGDHYITYPLLIAHAQKYGKPLSLIHFDAHCDTWADDA 173
Query: 61 GNKYSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQ 116
+ +H + F + ++ G + +QVGIR+ + G+ + R
Sbjct: 174 PDSLNHGTMFYKAVKDGLIDPKASVQVGIRTWNDD------YLGINVLDAAWVHEHGARA 227
Query: 117 FLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVAAD 175
LE ++ G + Y++ D+DCLDPAFAPG GGLS L I+ L +++ AD
Sbjct: 228 TLERIESIVGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRGLGGVNLIGAD 287
Query: 176 VVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
VVE P D +TA+ AA + +L +
Sbjct: 288 VVEVAPAYDQ-SEITAIAAAHVACDLLCLWRQ 318
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 187 bits (477), Expect = 3e-59
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 10/214 (4%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
++ + +++ + L++GGDHS++ +RAV+E+ G P+ V+HLDAH D AF
Sbjct: 97 IDTAQSHLSGLLKANAA-FLMIGGDHSLTVAALRAVAEQHG-PLAVVHLDAHSDTNPAFY 154
Query: 61 GNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRD-- 114
G +Y H + F ++ ++Q+GIR + + + GV F
Sbjct: 155 GGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGV 214
Query: 115 RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVA 173
+ ++ G + VY+SVD+D +DPAFAPG PGGL R+VL +L + V
Sbjct: 215 GGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVG 274
Query: 174 ADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
DV+E +P D G+T+++A ++ EL + ++
Sbjct: 275 FDVMEVSPLYDH-GGITSILATEIGAELLYQYAR 307
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 187 bits (477), Expect = 4e-59
Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 4 ITESVKLVMEEDP-LHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGN 62
I +++ ++ + P PL+LGGD+SIS+ I+A+++ G V+ DAH D+ + +G
Sbjct: 107 IFQTMHALLSDHPDWVPLILGGDNSISYSTIKAIAQT-KGTTAVIQFDAHHDVRNTEDGG 165
Query: 63 KYSHASSFARIMEGGY--ARRLLQVGIR--SITKEGREQGKRFGVEQYEMRTFSRDRQFL 118
++ + F R+++ + L+Q+GIR S ++ K+ V + M R++ +
Sbjct: 166 -PTNGTPFRRLLDEEIIEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMI-REKGLI 223
Query: 119 ENLK-----LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADV 171
+K + + ++ISVD+D LD + APG I PGGL ++L + + Q +V
Sbjct: 224 PTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTDELLEAVKYIAQQPNV 283
Query: 172 VAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
++VE +P D MT+ AA ++ +
Sbjct: 284 AGIEIVEVDPTLDF-RDMTSRAAAHVLLHALKGMKL 318
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae
O1 biovar eltor, structure genomics, protein structure
initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Length = 336
Score = 180 bits (458), Expect = 3e-56
Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 24/225 (10%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG------GPVDVLHLDAHPDIYD 57
+ ++ + +VLGG H I++ + +++ + +++ DAH D+
Sbjct: 107 CAQVIQQALPHA--RAIVLGGGHEIAWATFQGLAQHFLATGVKQPRIGIINFDAHFDLRT 164
Query: 58 A---FEGNKYSHASSFARIMEGGYAR----RLLQVGIR--SITKEGREQGKRFGVEQYEM 108
+ S + F +I + +G+ S T E+ + GV E
Sbjct: 165 FESELAPVRPSSGTPFNQIHHFCQQQGWDFHYACLGVSRASNTPALFERADKLGVWYVED 224
Query: 109 RTFSRD--RQFLENLK-LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILH 165
+ FS + L L+ + +Y+++D+D A APGVS G+S +
Sbjct: 225 KAFSPLSLKDHLTQLQHFIDDCDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFD 284
Query: 166 NLQA---DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
+ ++ AD+ E+NP D +D TA +AA+L ++ +++
Sbjct: 285 RILHYKNKLMIADIAEYNPSFD-IDQHTARLAARLCWDIANAMAE 328
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 175 bits (447), Expect = 1e-54
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 12/215 (5%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
+ I + V L PL +GGDH ++ P+ RA+ + P+ ++H DAH D D +
Sbjct: 102 LRRIEGFYRQVHAAGTL-PLSVGGDHLVTLPIFRALGRE--RPLGMVHFDAHSDTNDRYF 158
Query: 61 G-NKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRD- 114
G N Y+H + F R +E G R +Q+GIR + + + G+ M F
Sbjct: 159 GDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELG 218
Query: 115 -RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVV 172
L + G Y+S DVD LDPAFAPG E GG++ ++ L+ D+V
Sbjct: 219 VEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLV 278
Query: 173 AADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
ADVVE +P D G TA+V A ++ EL +++
Sbjct: 279 GADVVEVSPPFDV-GGATALVGATMMFELLCLLAE 312
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis,
nitrogen metabolism, manganese metalloenzyme; 2.15A
{Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A*
4cev_A 5cev_A*
Length = 299
Score = 171 bits (436), Expect = 3e-53
Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 28/221 (12%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGN 62
+ +V V++ PLVLGGDHSI+ + V++ + V+ DAH D+ +
Sbjct: 78 LAAAVDQVVQRGRF-PLVLGGDHSIAIGTLAGVAKH-YERLGVIWYDAHGDVNTAETSPS 135
Query: 63 KYSHASSFARIMEGGY--------------ARRLLQVGIRSITKEGREQGKRFGVEQYEM 108
H A + G+ ++ +G+RS+ + ++ + G++ Y M
Sbjct: 136 GNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTM 195
Query: 109 RTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLN 162
R + + L E GV++S+D+D LDP+ APGV GGL++R+
Sbjct: 196 HEVDRLGMTRVMEETIA--YLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHL 253
Query: 163 ILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 201
+ L + +A+ VE NP D TA VA L+ L
Sbjct: 254 AMEMLAEAQIITSAEFVEVNPILDE-RNKTASVAVALMGSL 293
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 167 bits (426), Expect = 1e-51
Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 10/214 (4%)
Query: 1 MNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE 60
+ +I + ++ L PL LGGDH+I+ P++RA+ + G V ++H+DAH D+ D
Sbjct: 105 VRIIEQEYDRILGHGIL-PLTLGGDHTITLPILRAIXKXHGX-VGLVHVDAHADVNDHMF 162
Query: 61 GNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRD-- 114
G +H ++F R +E R++Q+G+R+ T E + G +
Sbjct: 163 GEXIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRXQGFRVVQAEECWHXSL 222
Query: 115 RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVA 173
+ ++ G VY+S D+D +DPA+APG E GGL+ + I+ Q D++
Sbjct: 223 EPLMAEVREXVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIG 282
Query: 174 ADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
D+VE +P DT G T+++ A L+ E+ +
Sbjct: 283 CDLVEVSPPYDT-TGNTSLLGANLLYEMLCVLPG 315
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on
protein structural and function analyses; HET: LYS;
2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Length = 290
Score = 165 bits (419), Expect = 7e-51
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 27/203 (13%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGNKYSHASSFARIMEGG 77
P+VLGGDHS+S + + G V V+ +DAH D + H A + G
Sbjct: 89 PIVLGGDHSLSMGSVAGAAR--GRRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLG 146
Query: 78 Y-----------ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD------RQFLEN 120
+ + ++ VG+RS+ + K GV Y M R + L++
Sbjct: 147 HPRLTEVFRAVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKH 206
Query: 121 LKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVE 178
L +++S+D D LDP APGV PGGL++R+ ++ L V + D+VE
Sbjct: 207 L----QGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVE 262
Query: 179 FNPQRDTVDGMTAMVAAKLVREL 201
NP D TA + L L
Sbjct: 263 VNPILDE-RNRTAEMLVGLALSL 284
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 164 bits (417), Expect = 2e-49
Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 29/226 (12%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDA----- 58
+ +++ + + L +GGDH ++F I + + + V+ +DAH DI
Sbjct: 174 LFDTMSNELRKKNF-VLNIGGDHGVAFSSILSSLQM-YQNLRVIWIDAHGDINIPETSPS 231
Query: 59 --FEGNKYSHASSFARIMEGGY----------ARRLLQVGIRSITKEGREQGKRFGVEQY 106
+ G +H + + +GIR I + K+ + Y
Sbjct: 232 GNYHGMTLAHTLGLFKKKVPYFEWSENLTYLKPENTAIIGIRDIDAYEKIILKKCNINYY 291
Query: 107 EMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 160
+ ++ LE + ++IS+D+D +D FAPG + GGL++R++
Sbjct: 292 TIFDIEKNGIYNTICTALEKID-PNSNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREI 350
Query: 161 LNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAK 204
++ L VV+ D+VE+NP D + + + K
Sbjct: 351 NLLMKILAETKRVVSMDLVEYNPSLDE-VDKKVHGDSLPILDNATK 395
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein,
hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Length = 306
Score = 160 bits (407), Expect = 6e-49
Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 30/226 (13%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGN 62
+ E V + + + LGGDHS++ I + + V+ +DAH DI +
Sbjct: 76 LAEVVSRAVSDGYS-CVTLGGDHSLAIGTISGHARH-CPDLCVVWVDAHADINTPLTTSS 133
Query: 63 KYSHASSFARIMEGGY-----------------ARRLLQVGIRSITKEGREQGKRFGVEQ 105
H + ++ + ++ +G+R + K + ++
Sbjct: 134 GNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQY 193
Query: 106 YEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 159
+ MR R + + L G+ + +++S D+D DP AP GGL++R+
Sbjct: 194 FSMRDIDRLGIQKVMERTFDLLI-GKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYRE 252
Query: 160 VLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 203
+ I + + A D+VE NPQ T A A L ++ A
Sbjct: 253 GMYIAEEIHNTGLLSALDLVEVNPQLAT-SEEEAKTTANLAVDVIA 297
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid
inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo
sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A
2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A*
3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A*
3tf3_A 3th7_A 3the_A* ...
Length = 322
Score = 157 bits (398), Expect = 3e-47
Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGN 62
+ V V + + LVLGGDHS++ I + + V+ +DAH DI +
Sbjct: 80 LAGKVAEVKKNGRI-SLVLGGDHSLAIGSISGHARV-HPDLGVIWVDAHTDINTPLTTTS 137
Query: 63 KYSHASSFARIMEGGY-----------------ARRLLQVGIRSITKEGREQGKRFGVEQ 105
H + +++ A+ ++ +G+R + K G++
Sbjct: 138 GNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKY 197
Query: 106 YEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 159
+ M R + L L G + +++S DVD LDP+F P GGL++R+
Sbjct: 198 FSMTEVDRLGIGKVMEETLSYLL-GRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYRE 256
Query: 160 VLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 203
L I + + D++E NP +T
Sbjct: 257 GLYITEEIYKTGLLSGLDIMEVNPSLG-KTPEEVTRTVNTAVAITL 301
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI
hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Length = 330
Score = 152 bits (386), Expect = 2e-45
Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 46/245 (18%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEK-LGGPVDVLHLDAHPDIYD-AFEG 61
+ +K V E+ PL+L +H+ F + +A + +L+LDAH DI+
Sbjct: 70 LIPCMKEVFEKKEF-PLILSSEHANMFGIFQAFRSVHKDKKIGILYLDAHADIHTAYDSD 128
Query: 62 NKYSHASSFARIMEGGYAR------------------------------RLLQVGIRSIT 91
+K+ H ++ + L+ G+RS
Sbjct: 129 SKHIHGMPLGMVLNRVRSGFNRMSESEEKAWQKLCSLGLEKGGLEIDPKCLVYFGVRSTE 188
Query: 92 KEGREQGKRFGVEQYEMRTFSRD-----RQFLENLKLGEGVKGVYISVDVDCLDPAFAPG 146
+ R+ + + + + + ++ E+LK V +Y+S+D+D +D
Sbjct: 189 QSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLK---AVDIIYLSLDLDIMDGKLFTS 245
Query: 147 VSHIEPGGLSFRDVLNILHNLQA----DVVAADVVEFNPQRDTVDG-MTAMVAAKLVREL 201
E GLSF ++ +L L + A +V E+NP +++ +
Sbjct: 246 TGVRENNGLSFDELKQLLGLLLESFKDRLKAVEVTEYNPTVSIKHNNEEEKQVLEILDLI 305
Query: 202 TAKIS 206
Sbjct: 306 INSCK 310
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 91/234 (38%)
Query: 29 SFPVIRAV--------SEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYAR 80
+ + V + G + + ++ ++ F G K G R
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK------------GKRIR 1685
Query: 81 RLLQVGIRSITKEGREQGKRFGVEQYEMR---TFSRDR------QF------------LE 119
I +G+ + ++ E E TF ++ QF E
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 120 NLK---------------LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNIL 164
+LK LGE Y + + A +S ++ ++
Sbjct: 1746 DLKSKGLIPADATFAGHSLGE-----Y-AALA-----SLA--------DVMSIESLVEVV 1786
Query: 165 H---NLQADVVAAD--------VVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
V D ++ NP R + A + + ++ + ++ K
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGR-----VAASFSQEALQYVVERVGK 1835
Score = 33.9 bits (77), Expect = 0.033
Identities = 48/270 (17%), Positives = 86/270 (31%), Gaps = 116/270 (42%)
Query: 28 ISFPVI--------RAVSEKLG-GPVDVL-HLD---------------AHPDIYDAFEGN 62
IS P+I ++ LG P ++ +L A D +++F
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF--- 292
Query: 63 KYSHASSFARIMEGGYARRLLQVGIRS------------ITKEGREQGKRFGVEQYEMRT 110
+ + L +G+R I ++ E + GV M
Sbjct: 293 -FVSVRKAITV--------LFFIGVRCYEAYPNTSLPPSILEDSLENNE--GVPSP-M-- 338
Query: 111 FS-RD--RQFLE------NLKLGEGVKGVYISV--------------DVDCLDPAF---- 143
S + ++ ++ N L G K V IS+ + L+
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 144 AP-GV--SHIE------PGGLSFRDVLNI---LHN--LQ--ADVVAADV----VEFN--- 180
AP G+ S I F L + H+ L +D++ D+ V FN
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 181 ---PQRDTVDG-----MTAMVAAKLVRELT 202
P DT DG ++ ++ ++V +
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCII 484
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 29.8 bits (66), Expect = 0.57
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 34 RAVSEKLGGPVDVLHLDA-----HPDIYDAFEGNKYSHASSFARIMEGGYARRL 82
+ + G P V H+DA + F NKY + R M+ GY + +
Sbjct: 343 KDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMI 396
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004
orthologous group, structural genomics consortium, SGC,
unknown function; NMR {Thermoplasma acidophilum}
Length = 118
Score = 28.1 bits (62), Expect = 1.1
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 6 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 63
+S+K + E G S P I + K +++ + D +
Sbjct: 37 DSIKRKISELGFDVKSEGDLIIASIPGISRIEIKPDKRKILVNTGDYDSDADKLAVVR 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.6
Identities = 31/233 (13%), Positives = 66/233 (28%), Gaps = 87/233 (37%)
Query: 9 KLVMEEDPLHPLVLGGDHSISFPV-IRAVSEKL-------GGPVDVLHLD--AHPDIYDA 58
KL+ + DP DHS + + I ++ +L +L L + ++A
Sbjct: 204 KLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 59 FE-------------------GNKYSHASS---------------FARIMEGGYA---RR 81
F +H S + ++ R
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 82 LLQVG---IRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDC 138
+L + I + R+ + + ++ + L + I ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDK----LTTI----------IESSLNV 365
Query: 139 LDPA-----------FAPGVSHIEPGGLSFRDVLNIL-HNLQADVVAADVVEF 179
L+PA F P HI +L+++ ++ V V +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSA-HIPT------ILLSLIWFDVIKSDVMVVVNKL 411
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target
9375A, divergent enolase, lyase, PSI-2; 1.60A
{Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A
3es7_A 3fyy_A 3hpf_A*
Length = 391
Score = 26.5 bits (59), Expect = 7.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 22 LGGDHSISFPVIRAVSEKLGGPVDVLHLDAH 52
+G + + V E+ G V + D
Sbjct: 165 VGKNLDADEEFLSRVKEEFGSRVRIKSYDFS 195
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 26.2 bits (57), Expect = 9.6
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 65 SHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDR-QFLE 119
S A R + Y LQ G I K E+ E + F R +
Sbjct: 216 SFAIPQGREV-INY-YMPLQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYA 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,271,992
Number of extensions: 205175
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 32
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)