RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028588
(207 letters)
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae
[TaxId: 666]}
Length = 324
Score = 129 bits (326), Expect = 2e-37
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 19 PLVLGGDHSISFPVIRAVSEKLG------GPVDVLHLDAHPDIYDA---FEGNKYSHASS 69
+VLGG H I++ + +++ + +++ DAH D+ + S +
Sbjct: 111 AIVLGGGHEIAWATFQGLAQHFLATGVKQPRIGIINFDAHFDLRTFESELAPVRPSSGTP 170
Query: 70 FARIMEGGYAR------RLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQF---LEN 120
F +I + L V S T E+ + GV E + FS +
Sbjct: 171 FNQIHHFCQQQGWDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSPLSLKDHLTQL 230
Query: 121 LKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA---DVVAADVV 177
+ +Y+++D+D A APGVS G+S + + ++ AD+
Sbjct: 231 QHFIDDCDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFDRILHYKNKLMIADIA 290
Query: 178 EFNPQRDTVDGMTAMVAAKLVRELTAKISK 207
E+NP D +D TA +AA+L ++ +++
Sbjct: 291 EYNPSFD-IDQHTARLAARLCWDIANAMAE 319
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 121 bits (304), Expect = 2e-34
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 77
L++GGDHS++ +RAV + GP+ V+HLDAH D AF G +Y H + F ++
Sbjct: 105 AFLMIGGDHSLTVAALRAV-AEQHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEK 163
Query: 78 YAR--RLLQVGIR--SITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVY 131
++Q+GIR + + + + GV F + ++ G + VY
Sbjct: 164 LIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVY 223
Query: 132 ISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL-QADVVAADVVEFNPQRDTVDGMT 190
+SVD+D +DPAFAPG PGGL R+VL +L + V DV+E +P D G+T
Sbjct: 224 VSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYD-HGGIT 282
Query: 191 AMVAAKLVRELTAKISK 207
+++A ++ EL + ++
Sbjct: 283 SILATEIGAELLYQYAR 299
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 116 bits (290), Expect = 3e-32
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 6/191 (3%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFAR-IMEG 76
P+ LGGDHS+S+P++RA ++ + V+ LDAH D D K+S++S F R
Sbjct: 111 VPVFLGGDHSVSYPLLRAFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEAL 168
Query: 77 GYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDV 136
+ VG+R + + + L + VY SVDV
Sbjct: 169 PNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDV 228
Query: 137 DCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVA 194
D DPA PG S EP GL++ + IL A+ VV D+VE P D G + ++
Sbjct: 229 DGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLD-PTGRSELLM 287
Query: 195 AKLVRELTAKI 205
A+LV E ++
Sbjct: 288 ARLVMETLCEV 298
>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 115 bits (289), Expect = 5e-32
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 29/213 (13%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK-YSHASSFARIMEG 76
LVLGGDHS++ I ++ + V+ +DAH DI H + +++
Sbjct: 89 ISLVLGGDHSLAIGSISGH-ARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKE 147
Query: 77 G-----------------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD----- 114
A+ ++ +G+R + K G++ + M R
Sbjct: 148 LKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKV 207
Query: 115 -RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DV 171
+ L L G + +++S DVD LDP+F P GGL++R+ L I + +
Sbjct: 208 MEETLSYLL-GRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLL 266
Query: 172 VAADVVEFNPQRD-TVDGMTAMVAAKLVRELTA 203
D++E NP T + +T V + L
Sbjct: 267 SGLDIMEVNPSLGKTPEEVTRTVNTAVAITLAC 299
>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]}
Length = 298
Score = 112 bits (281), Expect = 7e-31
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDA-FEGNKYSHASSFARIM-- 74
PLVLGGDHSI+ + V++ + V+ DAH D+ A + H A +
Sbjct: 90 FPLVLGGDHSIAIGTLAGVAKH-YERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGF 148
Query: 75 ------------EGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSR----DRQFL 118
++ +G+RS+ + ++ + G++ Y M R
Sbjct: 149 GHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEE 208
Query: 119 ENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADV 176
L E GV++S+D+D LDP+ APGV GGL++R+ + L + +A+
Sbjct: 209 TIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEF 268
Query: 177 VEFNPQRDTVDGMTAMVAAKLVRELTAK 204
VE NP D TA VA L+ L +
Sbjct: 269 VEVNPILD-ERNKTASVAVALMGSLFGE 295
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
mitochondrial [TaxId: 9606]}
Length = 306
Score = 112 bits (280), Expect = 1e-30
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 28/225 (12%)
Query: 4 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEG-N 62
+ E V + + + LGGDHS++ I + V+ +DAH DI +
Sbjct: 76 LAEVVSRAVSDG-YSCVTLGGDHSLAIGTISGHARHCPDLC-VVWVDAHADINTPLTTSS 133
Query: 63 KYSHASSFARIMEGGYAR-----------------RLLQVGIRSITKEGREQGKRFGVEQ 105
H + ++ + ++ +G+R + K + ++
Sbjct: 134 GNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQY 193
Query: 106 YEMRTFSRDR-----QFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 160
+ MR R + +L +G+ + +++S D+D DP AP GGL++R+
Sbjct: 194 FSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREG 253
Query: 161 LNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 203
+ I + + A D+VE NPQ T A A L ++ A
Sbjct: 254 MYIAEEIHNTGLLSALDLVEVNPQLAT-SEEEAKTTANLAVDVIA 297
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 105 bits (262), Expect = 4e-28
Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 9/191 (4%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 77
P V+GG + S P RA+ G V V+++D+H D+ + + + F +++E
Sbjct: 102 FPFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLLEES 161
Query: 78 YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGV-----YI 132
V + ++ + + + + + E G+ +
Sbjct: 162 SFSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTGKNTFF 221
Query: 133 SVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAADVVEFNPQRDTVDGMT 190
S DVD L + PGVS GLS ++ ++ V+ D+ E NP + + +
Sbjct: 222 SFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMMMDMSELNPLVE--EYRS 279
Query: 191 AMVAAKLVREL 201
VA +
Sbjct: 280 PRVAVYMFYHF 290
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 28.9 bits (64), Expect = 0.30
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 39 KLGGPVDVLHLDAHPDIYDA-----FEGNKYSHASSFARIMEGGYARRL 82
LG P DV +DA + F G+K+ + + M+ G+ + +
Sbjct: 98 SLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLI 146
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.9 bits (64), Expect = 0.37
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 36 VSEKLGGPVDVLHLDAHP-----DIYDAFEGNKYSHASSFARIMEGGYARRL 82
+ G P V H+DA F NKY + R M+ GY + +
Sbjct: 94 IYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMI 145
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 25.9 bits (56), Expect = 4.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 168 QADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAK 204
DVVA +++ ++ + G+T + K +R TA+
Sbjct: 416 HMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFTAR 452
>d1jiwi_ b.61.2.1 (I:) Metalloprotease inhibitor {Pseudomonas
aeruginosa, aprin [TaxId: 287]}
Length = 105
Score = 24.8 bits (54), Expect = 4.2
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 132 ISVDVDCLDP--AFAPGVSHIEPGGLSFRD 159
+ D CL P P G++ +
Sbjct: 43 LGGDTACLTRWLPSEPRAWRPTPAGIALLE 72
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 25.7 bits (56), Expect = 4.3
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 18 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASS---FARIM 74
L G + + + E G H D P + +G S A + +
Sbjct: 255 QDLRFGAGDLRAAFWLVDLLES-AGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILK 313
Query: 75 E 75
E
Sbjct: 314 E 314
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 25.7 bits (55), Expect = 5.8
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
Query: 116 QFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAAD 175
L G++ V I + DP L D +
Sbjct: 376 ALACELYKVAGIRAVEIGSFLLGRDPK-TGKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 176 VVEFNPQRDTVDGMTAMVAAKLVRELTAK 204
+ G+T K++R TAK
Sbjct: 435 FKHVKENAANIKGLTFTYEPKVLRHFTAK 463
>d1am7a_ d.2.1.4 (A:) Lambda lysozyme {Bacteriophage lambda
[TaxId: 10710]}
Length = 154
Score = 24.5 bits (53), Expect = 9.0
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 49 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKE 93
HP S + +++ + Q+G++ + +
Sbjct: 45 YSDHPRKLVTLNPKLKSTGAGRYQLLSRWWDAYRKQLGLKDFSPK 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,997
Number of extensions: 34297
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 15
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)