Query 028589
Match_columns 207
No_of_seqs 122 out of 1847
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.4E-27 3.1E-32 167.8 16.3 147 29-201 10-156 (160)
2 KOG0027 Calmodulin and related 99.9 1.4E-25 3E-30 160.3 16.0 147 34-201 3-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.9 4E-23 8.7E-28 142.3 14.7 147 30-201 24-170 (172)
4 PTZ00183 centrin; Provisional 99.9 1.5E-22 3.2E-27 145.7 16.9 144 33-201 11-154 (158)
5 KOG0031 Myosin regulatory ligh 99.9 4.7E-22 1E-26 136.1 15.7 151 20-200 14-164 (171)
6 PTZ00184 calmodulin; Provision 99.9 6.4E-22 1.4E-26 140.9 16.4 143 33-200 5-147 (149)
7 KOG0037 Ca2+-binding protein, 99.9 2.6E-21 5.7E-26 140.3 17.4 136 37-204 55-191 (221)
8 KOG0030 Myosin essential light 99.9 7.3E-21 1.6E-25 128.1 13.2 142 35-200 7-150 (152)
9 KOG0034 Ca2+/calmodulin-depend 99.8 8E-19 1.7E-23 127.7 14.0 141 33-202 27-176 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5.6E-18 1.2E-22 123.4 11.9 146 32-201 19-175 (193)
11 KOG0036 Predicted mitochondria 99.7 1.1E-15 2.4E-20 120.4 15.4 136 34-200 9-145 (463)
12 PLN02964 phosphatidylserine de 99.5 4.8E-13 1.1E-17 113.7 13.0 103 33-163 137-243 (644)
13 cd05022 S-100A13 S-100A13: S-1 99.5 4.2E-13 9.1E-18 86.5 7.8 71 133-205 6-79 (89)
14 KOG0377 Protein serine/threoni 99.4 1.7E-12 3.6E-17 103.5 12.4 150 39-202 464-616 (631)
15 KOG4223 Reticulocalbin, calume 99.4 1.4E-12 3.1E-17 100.3 11.1 160 30-200 68-227 (325)
16 KOG4223 Reticulocalbin, calume 99.4 1.4E-12 3E-17 100.3 9.5 141 37-198 161-302 (325)
17 KOG0037 Ca2+-binding protein, 99.4 2.5E-12 5.3E-17 93.9 9.6 92 38-159 123-216 (221)
18 PF13499 EF-hand_7: EF-hand do 99.4 1.8E-12 3.8E-17 79.4 7.6 64 136-199 1-66 (66)
19 KOG0027 Calmodulin and related 99.4 7.9E-12 1.7E-16 89.2 10.7 108 74-205 7-117 (151)
20 cd05027 S-100B S-100B: S-100B 99.4 5.5E-12 1.2E-16 81.4 8.5 71 133-205 6-83 (88)
21 PF13499 EF-hand_7: EF-hand do 99.4 5.5E-12 1.2E-16 77.2 7.8 62 40-101 1-66 (66)
22 KOG0038 Ca2+-binding kinase in 99.3 7E-12 1.5E-16 85.6 8.6 101 77-201 73-177 (189)
23 cd05022 S-100A13 S-100A13: S-1 99.3 6.7E-12 1.5E-16 80.9 7.6 68 37-104 6-76 (89)
24 PTZ00183 centrin; Provisional 99.3 3.8E-11 8.3E-16 86.1 11.6 104 74-202 16-119 (158)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.3 2E-11 4.4E-16 89.2 9.5 113 39-164 64-176 (193)
26 cd05029 S-100A6 S-100A6: S-100 99.3 3.8E-11 8.3E-16 77.4 8.8 70 133-204 8-82 (88)
27 cd05027 S-100B S-100B: S-100B 99.3 3.4E-11 7.3E-16 77.7 8.5 68 37-104 6-80 (88)
28 PTZ00184 calmodulin; Provision 99.3 1.4E-10 2.9E-15 82.3 11.8 103 75-202 11-113 (149)
29 cd05025 S-100A1 S-100A1: S-100 99.3 6E-11 1.3E-15 77.5 8.7 73 133-205 7-84 (92)
30 cd05026 S-100Z S-100Z: S-100Z 99.3 5.2E-11 1.1E-15 77.8 8.4 73 133-205 8-85 (93)
31 COG5126 FRQ1 Ca2+-binding prot 99.2 1.7E-10 3.8E-15 81.6 11.4 105 72-202 14-121 (160)
32 cd05031 S-100A10_like S-100A10 99.2 1.1E-10 2.4E-15 76.5 8.5 72 133-204 6-82 (94)
33 smart00027 EH Eps15 homology d 99.2 2E-10 4.3E-15 75.6 8.7 69 34-104 5-73 (96)
34 cd00052 EH Eps15 homology doma 99.2 1.9E-10 4.1E-15 70.4 7.8 64 138-205 2-65 (67)
35 PF13833 EF-hand_8: EF-hand do 99.2 1.5E-10 3.3E-15 67.8 7.1 52 148-201 1-53 (54)
36 smart00027 EH Eps15 homology d 99.2 2.9E-10 6.2E-15 74.8 8.9 69 132-204 7-75 (96)
37 cd05023 S-100A11 S-100A11: S-1 99.1 5.1E-10 1.1E-14 72.3 8.8 74 132-205 6-84 (89)
38 cd00213 S-100 S-100: S-100 dom 99.1 3.8E-10 8.3E-15 73.0 8.3 72 133-204 6-82 (88)
39 cd05025 S-100A1 S-100A1: S-100 99.1 4.8E-10 1E-14 73.2 8.4 67 38-104 8-81 (92)
40 cd05031 S-100A10_like S-100A10 99.1 4.4E-10 9.5E-15 73.7 8.2 67 38-104 7-80 (94)
41 PF14658 EF-hand_9: EF-hand do 99.1 3.5E-10 7.5E-15 67.6 6.7 64 139-203 2-66 (66)
42 cd05029 S-100A6 S-100A6: S-100 99.1 6.5E-10 1.4E-14 71.7 8.4 69 36-104 7-80 (88)
43 cd05026 S-100Z S-100Z: S-100Z 99.1 8.7E-10 1.9E-14 72.0 8.5 68 37-104 8-82 (93)
44 cd00213 S-100 S-100: S-100 dom 99.1 6.3E-10 1.4E-14 72.0 7.5 70 35-104 4-80 (88)
45 PF13833 EF-hand_8: EF-hand do 99.1 7E-10 1.5E-14 64.9 6.9 52 52-103 1-53 (54)
46 KOG2562 Protein phosphatase 2 99.1 1.1E-09 2.4E-14 88.1 10.0 127 44-197 283-420 (493)
47 cd00052 EH Eps15 homology doma 99.1 7E-10 1.5E-14 67.8 6.9 61 42-104 2-62 (67)
48 KOG0028 Ca2+-binding protein ( 99.1 3.2E-09 6.8E-14 74.0 10.4 103 74-202 32-135 (172)
49 KOG0034 Ca2+/calmodulin-depend 99.0 3.9E-09 8.4E-14 77.2 11.1 109 39-164 66-176 (187)
50 cd00051 EFh EF-hand, calcium b 99.0 1.6E-09 3.5E-14 64.6 7.8 61 137-199 2-62 (63)
51 PLN02964 phosphatidylserine de 99.0 2.9E-09 6.2E-14 91.0 11.9 103 74-202 142-244 (644)
52 cd00051 EFh EF-hand, calcium b 99.0 1.4E-09 3E-14 64.9 7.1 61 41-101 2-62 (63)
53 KOG2643 Ca2+ binding protein, 99.0 1.4E-09 3E-14 87.0 8.9 155 21-205 300-457 (489)
54 KOG0040 Ca2+-binding actin-bun 99.0 1.6E-09 3.5E-14 97.1 9.6 135 33-199 2247-2396(2399)
55 cd05030 calgranulins Calgranul 99.0 4.9E-09 1.1E-13 67.7 7.8 70 133-204 6-82 (88)
56 KOG2643 Ca2+ binding protein, 98.9 9.9E-09 2.1E-13 82.2 10.5 133 39-201 233-384 (489)
57 KOG0036 Predicted mitochondria 98.9 1.4E-08 3.1E-13 80.8 11.1 127 38-200 50-182 (463)
58 cd05023 S-100A11 S-100A11: S-1 98.9 9.1E-09 2E-13 66.5 8.4 68 37-104 7-81 (89)
59 PF14658 EF-hand_9: EF-hand do 98.9 6.3E-09 1.4E-13 62.2 6.8 62 43-104 2-65 (66)
60 cd00252 SPARC_EC SPARC_EC; ext 98.9 6.9E-09 1.5E-13 70.2 7.6 64 131-200 44-107 (116)
61 KOG0041 Predicted Ca2+-binding 98.9 1.1E-08 2.4E-13 73.8 8.4 69 133-203 97-165 (244)
62 cd00252 SPARC_EC SPARC_EC; ext 98.8 2.4E-08 5.2E-13 67.5 7.5 64 34-101 43-106 (116)
63 cd05030 calgranulins Calgranul 98.7 5.3E-08 1.2E-12 62.9 7.1 68 37-104 6-80 (88)
64 KOG4251 Calcium binding protei 98.7 3.9E-08 8.5E-13 73.3 5.7 151 38-199 100-262 (362)
65 cd05024 S-100A10 S-100A10: A s 98.6 5.7E-07 1.2E-11 57.7 8.6 71 134-205 7-80 (91)
66 KOG0030 Myosin essential light 98.6 1.6E-07 3.4E-12 64.1 5.3 69 33-102 82-150 (152)
67 PF00036 EF-hand_1: EF hand; 98.5 2.2E-07 4.9E-12 46.7 4.2 29 40-68 1-29 (29)
68 PF00036 EF-hand_1: EF hand; 98.5 1.6E-07 3.6E-12 47.2 3.7 27 137-163 2-28 (29)
69 KOG0041 Predicted Ca2+-binding 98.5 2.5E-06 5.5E-11 61.9 10.6 73 32-104 92-164 (244)
70 KOG0751 Mitochondrial aspartat 98.5 2.3E-06 5E-11 69.9 11.3 137 39-204 33-178 (694)
71 KOG0169 Phosphoinositide-speci 98.5 3.4E-06 7.4E-11 72.3 12.6 144 30-201 127-274 (746)
72 PF12763 EF-hand_4: Cytoskelet 98.4 1.7E-06 3.6E-11 57.4 7.9 70 32-104 3-72 (104)
73 PF13405 EF-hand_6: EF-hand do 98.4 7.9E-07 1.7E-11 45.5 4.3 30 40-69 1-31 (31)
74 KOG0031 Myosin regulatory ligh 98.4 2.3E-06 5E-11 59.5 7.7 67 38-104 100-166 (171)
75 cd05024 S-100A10 S-100A10: A s 98.4 4.3E-06 9.4E-11 53.6 8.2 66 38-104 7-77 (91)
76 PF13405 EF-hand_6: EF-hand do 98.3 8.6E-07 1.9E-11 45.4 3.7 30 136-165 1-31 (31)
77 KOG0751 Mitochondrial aspartat 98.3 3.3E-06 7.2E-11 69.1 8.9 125 40-196 109-239 (694)
78 PF12763 EF-hand_4: Cytoskelet 98.3 6.8E-06 1.5E-10 54.5 8.5 69 130-203 5-73 (104)
79 KOG0377 Protein serine/threoni 98.3 4.7E-06 1E-10 67.3 7.8 66 39-104 547-616 (631)
80 KOG4666 Predicted phosphate ac 98.2 2.3E-06 5.1E-11 66.4 4.6 119 52-200 240-358 (412)
81 KOG1707 Predicted Ras related/ 98.2 2.5E-05 5.3E-10 65.5 10.7 179 19-201 175-377 (625)
82 KOG0040 Ca2+-binding actin-bun 98.2 5.7E-06 1.2E-10 75.3 7.3 71 131-201 2249-2324(2399)
83 PF14788 EF-hand_10: EF hand; 98.2 9.7E-06 2.1E-10 45.8 5.7 50 55-104 1-50 (51)
84 PRK12309 transaldolase/EF-hand 98.1 1E-05 2.3E-10 66.0 7.3 61 129-204 328-388 (391)
85 PF13202 EF-hand_5: EF hand; P 98.1 4.5E-06 9.7E-11 40.4 3.2 25 137-161 1-25 (25)
86 KOG4251 Calcium binding protei 98.0 3.4E-05 7.5E-10 57.9 7.9 137 44-198 203-342 (362)
87 KOG1029 Endocytic adaptor prot 98.0 0.00023 5E-09 61.5 13.3 158 39-202 13-258 (1118)
88 PF13202 EF-hand_5: EF hand; P 98.0 1.4E-05 3.1E-10 38.6 3.7 25 41-65 1-25 (25)
89 PF14788 EF-hand_10: EF hand; 98.0 4.2E-05 9.1E-10 43.2 5.9 50 151-202 1-50 (51)
90 KOG0038 Ca2+-binding kinase in 97.9 0.0001 2.2E-09 50.9 8.1 105 41-164 73-178 (189)
91 KOG2562 Protein phosphatase 2 97.9 0.00013 2.8E-09 59.6 10.0 67 135-206 275-348 (493)
92 PF10591 SPARC_Ca_bdg: Secrete 97.9 2.6E-05 5.7E-10 52.6 4.7 65 129-197 48-112 (113)
93 PRK12309 transaldolase/EF-hand 97.8 4.7E-05 1E-09 62.2 6.6 54 38-104 333-386 (391)
94 PF09279 EF-hand_like: Phospho 97.8 8.8E-05 1.9E-09 47.2 6.1 65 136-201 1-69 (83)
95 KOG4065 Uncharacterized conser 97.7 0.00013 2.9E-09 48.3 5.9 61 139-199 71-143 (144)
96 KOG0046 Ca2+-binding actin-bun 97.7 0.00023 5E-09 58.9 7.8 73 31-104 11-86 (627)
97 KOG0046 Ca2+-binding actin-bun 97.6 0.0003 6.6E-09 58.3 7.9 76 129-205 13-89 (627)
98 PF10591 SPARC_Ca_bdg: Secrete 97.6 3.9E-05 8.4E-10 51.8 2.1 65 33-99 48-112 (113)
99 PF05042 Caleosin: Caleosin re 97.4 0.0037 8E-08 44.8 9.6 151 39-199 7-164 (174)
100 KOG0998 Synaptic vesicle prote 97.2 0.00097 2.1E-08 59.9 6.9 171 28-205 118-349 (847)
101 smart00054 EFh EF-hand, calciu 97.1 0.00091 2E-08 32.4 3.4 27 41-67 2-28 (29)
102 smart00054 EFh EF-hand, calciu 97.0 0.001 2.2E-08 32.2 3.0 25 176-200 3-27 (29)
103 KOG4666 Predicted phosphate ac 96.9 0.0026 5.7E-08 49.9 5.7 102 39-165 259-361 (412)
104 KOG0035 Ca2+-binding actin-bun 96.8 0.015 3.4E-07 51.8 10.4 104 32-159 740-848 (890)
105 PF09279 EF-hand_like: Phospho 96.8 0.0053 1.2E-07 38.9 5.5 64 40-104 1-70 (83)
106 PLN02952 phosphoinositide phos 96.5 0.023 5E-07 49.1 9.3 91 88-201 13-110 (599)
107 KOG4065 Uncharacterized conser 96.5 0.014 3E-07 38.9 6.0 58 43-100 71-142 (144)
108 PF05517 p25-alpha: p25-alpha 96.1 0.067 1.5E-06 38.2 8.3 67 138-204 2-72 (154)
109 KOG1955 Ral-GTPase effector RA 96.0 0.025 5.4E-07 47.1 6.6 72 31-104 223-294 (737)
110 PF05517 p25-alpha: p25-alpha 96.0 0.054 1.2E-06 38.7 7.7 64 41-104 1-70 (154)
111 KOG0169 Phosphoinositide-speci 96.0 0.091 2E-06 46.1 10.0 101 72-202 133-233 (746)
112 KOG1955 Ral-GTPase effector RA 95.9 0.022 4.7E-07 47.4 5.6 69 131-203 227-295 (737)
113 KOG1029 Endocytic adaptor prot 95.5 0.048 1E-06 47.8 6.6 70 35-106 191-260 (1118)
114 KOG1265 Phospholipase C [Lipid 95.5 0.28 6.1E-06 44.0 11.2 123 49-201 158-299 (1189)
115 KOG3555 Ca2+-binding proteogly 94.9 0.041 9E-07 43.7 4.2 66 130-201 245-310 (434)
116 KOG3555 Ca2+-binding proteogly 94.9 0.071 1.5E-06 42.5 5.4 99 39-165 211-312 (434)
117 KOG0042 Glycerol-3-phosphate d 94.7 0.078 1.7E-06 45.1 5.6 75 30-104 584-658 (680)
118 KOG2243 Ca2+ release channel ( 94.5 0.07 1.5E-06 49.8 5.0 59 139-200 4061-4119(5019)
119 KOG0998 Synaptic vesicle prote 94.3 0.14 2.9E-06 46.6 6.4 159 39-204 11-193 (847)
120 KOG2243 Ca2+ release channel ( 94.2 0.088 1.9E-06 49.2 5.0 59 45-104 4063-4121(5019)
121 KOG4347 GTPase-activating prot 94.0 0.38 8.2E-06 41.6 8.2 77 56-157 535-612 (671)
122 PF09069 EF-hand_3: EF-hand; 93.5 1 2.2E-05 28.9 7.7 65 134-201 2-75 (90)
123 PF08726 EFhand_Ca_insen: Ca2+ 93.3 0.079 1.7E-06 32.2 2.2 55 134-198 5-66 (69)
124 KOG0042 Glycerol-3-phosphate d 93.2 0.28 6E-06 41.9 6.1 69 133-203 591-659 (680)
125 KOG4578 Uncharacterized conser 92.9 0.075 1.6E-06 42.0 2.2 66 134-203 332-400 (421)
126 PF05042 Caleosin: Caleosin re 91.9 1 2.3E-05 32.5 6.8 67 135-201 7-124 (174)
127 KOG1707 Predicted Ras related/ 91.8 0.33 7.2E-06 41.6 4.8 70 32-104 308-378 (625)
128 PLN02222 phosphoinositide phos 91.2 0.94 2E-05 39.4 7.0 67 133-201 23-90 (581)
129 KOG4578 Uncharacterized conser 91.1 0.17 3.6E-06 40.1 2.3 65 40-104 334-399 (421)
130 PF08976 DUF1880: Domain of un 90.7 0.27 5.9E-06 32.9 2.6 32 170-201 4-35 (118)
131 PF09069 EF-hand_3: EF-hand; 90.4 3.3 7.3E-05 26.6 7.7 62 39-103 3-75 (90)
132 PLN02228 Phosphoinositide phos 89.8 1.8 3.8E-05 37.6 7.5 67 133-201 22-92 (567)
133 KOG0035 Ca2+-binding actin-bun 89.4 1.5 3.3E-05 39.7 7.0 75 129-203 741-818 (890)
134 PLN02952 phosphoinositide phos 89.3 3.6 7.8E-05 36.0 9.0 52 52-104 13-66 (599)
135 PLN02230 phosphoinositide phos 88.8 2.3 5E-05 37.1 7.5 68 133-201 27-102 (598)
136 KOG3866 DNA-binding protein of 88.2 0.56 1.2E-05 37.0 3.2 63 138-200 247-323 (442)
137 PF08726 EFhand_Ca_insen: Ca2+ 87.6 0.66 1.4E-05 28.2 2.6 54 39-100 6-66 (69)
138 PF08976 DUF1880: Domain of un 87.3 0.62 1.4E-05 31.2 2.6 33 72-104 4-36 (118)
139 KOG3866 DNA-binding protein of 87.1 2.4 5.3E-05 33.6 6.0 61 42-102 247-323 (442)
140 KOG4347 GTPase-activating prot 85.8 1.3 2.8E-05 38.5 4.3 61 36-97 552-612 (671)
141 PLN02223 phosphoinositide phos 83.5 5.1 0.00011 34.5 6.8 68 133-201 14-92 (537)
142 PF02761 Cbl_N2: CBL proto-onc 83.3 6.5 0.00014 24.9 5.6 24 142-165 49-72 (85)
143 KOG2871 Uncharacterized conser 82.1 0.82 1.8E-05 37.0 1.6 67 131-199 305-372 (449)
144 PF07308 DUF1456: Protein of u 80.8 10 0.00022 23.0 5.7 51 152-204 14-64 (68)
145 PF09068 EF-hand_2: EF hand; 80.6 16 0.00034 25.1 7.8 31 134-164 96-126 (127)
146 PF07308 DUF1456: Protein of u 80.6 7.6 0.00016 23.5 5.1 48 57-104 15-62 (68)
147 PF14513 DAG_kinase_N: Diacylg 78.7 3.5 7.7E-05 28.8 3.7 53 149-205 5-64 (138)
148 PF11116 DUF2624: Protein of u 77.8 15 0.00033 23.3 7.9 70 54-144 13-82 (85)
149 PF08414 NADPH_Ox: Respiratory 77.5 17 0.00037 23.7 6.8 66 134-206 29-97 (100)
150 PF12174 RST: RCD1-SRO-TAF4 (R 76.2 7.8 0.00017 23.6 4.2 50 149-203 6-55 (70)
151 KOG0039 Ferric reductase, NADH 76.0 6.5 0.00014 35.0 5.4 72 129-201 12-89 (646)
152 KOG4070 Putative signal transd 75.5 7.6 0.00016 27.4 4.5 65 40-104 13-86 (180)
153 PF08414 NADPH_Ox: Respiratory 75.3 4.6 0.0001 26.4 3.2 60 39-104 30-93 (100)
154 PRK13654 magnesium-protoporphy 73.2 11 0.00024 30.3 5.4 102 32-167 38-144 (355)
155 KOG4286 Dystrophin-like protei 72.8 43 0.00094 30.3 9.2 136 37-200 418-579 (966)
156 KOG3449 60S acidic ribosomal p 72.8 25 0.00054 23.4 6.3 43 138-182 4-46 (112)
157 KOG2871 Uncharacterized conser 72.2 6.5 0.00014 32.1 4.0 65 38-102 308-373 (449)
158 PF02761 Cbl_N2: CBL proto-onc 72.2 22 0.00048 22.5 6.3 53 147-201 18-70 (85)
159 KOG3449 60S acidic ribosomal p 71.3 26 0.00056 23.3 6.0 55 41-100 3-57 (112)
160 CHL00185 ycf59 magnesium-proto 71.2 7.4 0.00016 31.2 4.1 100 33-166 35-139 (351)
161 PF05099 TerB: Tellurite resis 70.2 8.3 0.00018 26.5 3.9 52 52-103 36-89 (140)
162 COG4103 Uncharacterized protei 70.2 30 0.00066 24.2 6.4 62 139-202 34-95 (148)
163 cd07313 terB_like_2 tellurium 69.7 5.7 0.00012 25.9 2.9 55 148-202 12-66 (104)
164 cd07313 terB_like_2 tellurium 69.2 28 0.00061 22.5 6.9 52 53-104 13-66 (104)
165 PLN02508 magnesium-protoporphy 69.0 12 0.00025 30.1 4.7 98 35-166 37-139 (357)
166 KOG1264 Phospholipase C [Lipid 68.8 31 0.00068 31.5 7.7 143 33-200 137-292 (1267)
167 cd01047 ACSF Aerobic Cyclase S 68.7 11 0.00024 29.8 4.5 97 36-166 22-123 (323)
168 KOG1785 Tyrosine kinase negati 68.5 35 0.00076 28.3 7.4 103 71-206 171-279 (563)
169 KOG4301 Beta-dystrobrevin [Cyt 67.4 45 0.00097 27.1 7.6 62 78-164 113-174 (434)
170 TIGR02029 AcsF magnesium-proto 66.1 11 0.00024 30.1 4.0 100 33-166 29-133 (337)
171 PF12174 RST: RCD1-SRO-TAF4 (R 65.8 23 0.00049 21.6 4.6 28 137-164 27-54 (70)
172 PLN02228 Phosphoinositide phos 65.8 36 0.00079 29.8 7.5 65 38-104 23-93 (567)
173 PRK09430 djlA Dna-J like membr 64.9 66 0.0014 25.2 8.4 64 37-104 51-121 (267)
174 PLN02222 phosphoinositide phos 64.9 31 0.00068 30.3 6.9 66 37-104 23-91 (581)
175 TIGR01848 PHA_reg_PhaR polyhyd 64.1 31 0.00067 22.9 5.2 49 143-191 11-67 (107)
176 KOG4403 Cell surface glycoprot 60.8 25 0.00053 29.5 5.3 69 130-203 63-131 (575)
177 PF14513 DAG_kinase_N: Diacylg 59.8 58 0.0012 22.8 6.4 47 136-183 26-79 (138)
178 PLN02230 phosphoinositide phos 59.4 53 0.0011 29.1 7.4 67 37-104 27-103 (598)
179 PF01023 S_100: S-100/ICaBP ty 59.3 28 0.0006 19.0 4.2 30 135-164 6-37 (44)
180 KOG1265 Phospholipase C [Lipid 58.9 47 0.001 30.7 7.0 66 39-104 221-300 (1189)
181 PHA03155 hypothetical protein; 58.5 51 0.0011 22.1 5.5 98 55-178 7-104 (115)
182 KOG1785 Tyrosine kinase negati 58.1 64 0.0014 26.9 7.1 95 42-164 178-275 (563)
183 PTZ00373 60S Acidic ribosomal 57.6 56 0.0012 22.0 6.4 55 40-99 4-58 (112)
184 PF00404 Dockerin_1: Dockerin 57.3 13 0.00029 16.8 1.9 14 145-158 1-14 (21)
185 KOG4004 Matricellular protein 56.9 3.9 8.4E-05 30.3 0.2 57 46-104 194-251 (259)
186 PHA02105 hypothetical protein 54.7 26 0.00057 20.3 3.3 50 151-200 4-56 (68)
187 PF07879 PHB_acc_N: PHB/PHA ac 53.1 32 0.00069 20.5 3.6 41 142-182 10-58 (64)
188 KOG2301 Voltage-gated Ca2+ cha 50.6 14 0.0003 36.4 2.7 72 32-104 1410-1485(1592)
189 PF11116 DUF2624: Protein of u 49.5 66 0.0014 20.4 6.2 34 150-185 13-46 (85)
190 PF09336 Vps4_C: Vps4 C termin 48.0 22 0.00048 21.0 2.4 27 55-81 29-55 (62)
191 TIGR01639 P_fal_TIGR01639 Plas 47.6 46 0.001 19.5 3.8 31 54-84 8-38 (61)
192 PF03979 Sigma70_r1_1: Sigma-7 47.5 23 0.00051 22.1 2.7 44 135-184 7-50 (82)
193 PRK09430 djlA Dna-J like membr 47.3 37 0.0008 26.6 4.3 56 147-203 67-122 (267)
194 PF02037 SAP: SAP domain; Int 46.9 40 0.00087 17.2 4.1 27 151-177 3-29 (35)
195 PTZ00373 60S Acidic ribosomal 46.8 88 0.0019 21.0 5.5 44 138-183 6-49 (112)
196 KOG4004 Matricellular protein 45.8 14 0.00031 27.4 1.7 57 139-199 191-248 (259)
197 PF01885 PTS_2-RNA: RNA 2'-pho 45.6 49 0.0011 24.4 4.5 38 49-86 26-63 (186)
198 cd05833 Ribosomal_P2 Ribosomal 44.9 76 0.0016 21.2 4.9 56 42-102 4-59 (109)
199 KOG1954 Endocytosis/signaling 43.5 41 0.00088 28.0 4.0 57 137-198 446-502 (532)
200 smart00513 SAP Putative DNA-bi 43.4 46 0.001 16.9 4.3 26 151-176 3-28 (35)
201 KOG3741 Poly(A) ribonuclease s 42.9 32 0.00069 30.0 3.4 61 138-205 589-651 (655)
202 PF11300 DUF3102: Protein of u 42.6 1.1E+02 0.0025 21.1 6.4 28 55-84 38-66 (130)
203 PF07499 RuvA_C: RuvA, C-termi 41.5 61 0.0013 17.7 3.9 37 59-99 4-40 (47)
204 PF13608 Potyvirid-P3: Protein 41.5 17 0.00036 30.8 1.7 104 76-180 290-399 (445)
205 PF14178 YppF: YppF-like prote 40.7 77 0.0017 18.6 5.1 47 154-202 3-49 (60)
206 PRK00819 RNA 2'-phosphotransfe 40.2 77 0.0017 23.3 4.7 43 50-95 28-70 (179)
207 PF02885 Glycos_trans_3N: Glyc 38.7 62 0.0013 19.1 3.5 14 151-164 14-27 (66)
208 PLN00138 large subunit ribosom 38.6 1.1E+02 0.0023 20.7 4.8 52 43-99 5-56 (113)
209 KOG4301 Beta-dystrobrevin [Cyt 38.1 63 0.0014 26.3 4.2 64 137-203 112-175 (434)
210 PLN02223 phosphoinositide phos 38.1 1.5E+02 0.0032 25.9 6.7 65 39-104 16-93 (537)
211 PF03672 UPF0154: Uncharacteri 37.3 84 0.0018 18.8 3.7 32 53-84 29-60 (64)
212 cd07176 terB tellurite resista 37.2 18 0.0004 23.5 1.1 16 149-164 16-31 (111)
213 PF09068 EF-hand_2: EF hand; 36.9 1.4E+02 0.003 20.5 7.6 70 131-200 37-124 (127)
214 PF01885 PTS_2-RNA: RNA 2'-pho 36.9 67 0.0015 23.7 4.0 37 145-183 26-62 (186)
215 PF05099 TerB: Tellurite resis 36.7 9.5 0.0002 26.3 -0.4 53 148-200 36-88 (140)
216 cd05833 Ribosomal_P2 Ribosomal 36.5 1.3E+02 0.0028 20.1 5.4 56 138-200 4-59 (109)
217 PF08349 DUF1722: Protein of u 34.7 1.4E+02 0.0031 20.0 6.0 48 157-206 55-102 (117)
218 PF08461 HTH_12: Ribonuclease 34.5 56 0.0012 19.5 2.8 37 52-88 10-46 (66)
219 PF03683 UPF0175: Uncharacteri 34.3 79 0.0017 19.4 3.5 24 153-176 47-70 (76)
220 TIGR01550 DOC_P1 death-on-curi 34.3 1.4E+02 0.003 20.2 5.0 53 146-200 68-120 (121)
221 PF12419 DUF3670: SNF2 Helicas 33.8 68 0.0015 22.4 3.5 51 148-198 80-138 (141)
222 PF12995 DUF3879: Domain of un 33.2 1.9E+02 0.0041 21.0 5.7 35 56-90 2-36 (186)
223 TIGR02553 SipD_IpaD_SspD type 33.2 2.6E+02 0.0056 22.5 7.5 69 133-204 225-296 (308)
224 cd04411 Ribosomal_P1_P2_L12p R 32.5 1.5E+02 0.0033 19.6 6.9 43 56-103 17-59 (105)
225 PF12631 GTPase_Cys_C: Catalyt 32.3 1E+02 0.0022 18.7 3.7 46 39-84 23-72 (73)
226 PF05994 FragX_IP: Cytoplasmic 32.0 2.6E+02 0.0055 26.1 7.5 166 32-205 381-562 (820)
227 PF11867 DUF3387: Domain of un 31.5 1.4E+02 0.003 24.3 5.4 137 40-182 102-254 (335)
228 PF12238 MSA-2c: Merozoite sur 31.3 1.1E+02 0.0023 23.1 4.3 37 129-165 78-115 (205)
229 TIGR01848 PHA_reg_PhaR polyhyd 30.7 1.7E+02 0.0036 19.5 6.5 49 47-95 11-69 (107)
230 KOG4403 Cell surface glycoprot 30.6 1.9E+02 0.004 24.6 5.8 34 34-67 63-96 (575)
231 PRK00819 RNA 2'-phosphotransfe 30.5 1.1E+02 0.0024 22.4 4.3 37 145-183 27-63 (179)
232 cd08315 Death_TRAILR_DR4_DR5 D 29.0 1.7E+02 0.0036 19.0 9.1 40 39-84 4-43 (96)
233 PF12486 DUF3702: ImpA domain 28.6 1.1E+02 0.0024 21.7 3.8 31 37-67 67-97 (148)
234 PRK00523 hypothetical protein; 28.4 1.3E+02 0.0029 18.4 3.6 32 53-84 37-68 (72)
235 COG2036 HHT1 Histones H3 and H 28.2 1.7E+02 0.0037 18.9 6.0 79 56-165 4-85 (91)
236 KOG2301 Voltage-gated Ca2+ cha 27.8 49 0.0011 32.8 2.5 75 129-203 1411-1486(1592)
237 TIGR02675 tape_meas_nterm tape 27.6 70 0.0015 19.6 2.4 18 147-164 26-43 (75)
238 cd00171 Sec7 Sec7 domain; Doma 27.5 2.5E+02 0.0054 20.6 11.2 38 145-182 143-180 (185)
239 COG4103 Uncharacterized protei 27.4 2.3E+02 0.0049 20.0 7.7 92 43-162 34-128 (148)
240 cd07316 terB_like_DjlA N-termi 27.1 1.7E+02 0.0038 18.6 5.2 53 149-202 13-65 (106)
241 PF09107 SelB-wing_3: Elongati 27.0 92 0.002 17.5 2.6 31 53-88 8-38 (50)
242 COG4807 Uncharacterized protei 26.9 2.2E+02 0.0048 19.8 8.8 110 60-184 20-129 (155)
243 KOG2278 RNA:NAD 2'-phosphotran 26.9 87 0.0019 22.9 3.0 38 49-86 28-65 (207)
244 KOG2557 Uncharacterized conser 26.6 2E+02 0.0043 23.9 5.3 52 89-164 72-123 (427)
245 PF12983 DUF3867: Protein of u 26.3 1.7E+02 0.0037 21.3 4.4 35 151-185 54-88 (186)
246 COG5562 Phage envelope protein 26.2 47 0.001 23.1 1.6 49 147-201 52-100 (137)
247 cd08316 Death_FAS_TNFRSF6 Deat 26.2 1.9E+02 0.0042 18.8 7.6 44 54-104 16-59 (97)
248 PF01325 Fe_dep_repress: Iron 25.9 1.4E+02 0.0031 17.3 4.6 52 35-95 4-55 (60)
249 cd07894 Adenylation_RNA_ligase 25.8 1.1E+02 0.0025 24.9 4.0 101 44-165 127-240 (342)
250 KOG0506 Glutaminase (contains 25.5 1.8E+02 0.0039 25.1 5.0 63 140-204 91-161 (622)
251 PF12207 DUF3600: Domain of un 25.4 1.9E+02 0.0041 20.5 4.3 30 174-203 88-119 (162)
252 PF06384 ICAT: Beta-catenin-in 25.2 1E+02 0.0022 19.2 2.8 23 60-82 21-43 (78)
253 PF04558 tRNA_synt_1c_R1: Glut 25.0 83 0.0018 22.7 2.8 46 134-182 84-129 (164)
254 TIGR00135 gatC glutamyl-tRNA(G 25.0 1.3E+02 0.0027 19.2 3.4 30 56-85 1-30 (93)
255 PF14165 YtzH: YtzH-like prote 24.9 1.9E+02 0.0042 18.4 4.2 56 134-189 7-63 (87)
256 PF09373 PMBR: Pseudomurein-bi 24.9 1.1E+02 0.0023 15.4 2.5 15 187-201 2-16 (33)
257 PRK11511 DNA-binding transcrip 24.7 2.3E+02 0.0049 19.1 8.1 57 37-103 7-63 (127)
258 COG3763 Uncharacterized protei 24.7 1.7E+02 0.0038 17.8 3.9 33 148-182 35-67 (71)
259 PF15144 DUF4576: Domain of un 23.9 32 0.00069 21.3 0.4 42 53-95 38-79 (88)
260 TIGR01209 RNA ligase, Pab1020 23.8 1.4E+02 0.0031 24.7 4.2 99 45-164 163-272 (374)
261 PF04433 SWIRM: SWIRM domain; 23.7 62 0.0013 20.2 1.7 45 44-94 42-86 (86)
262 COG5611 Predicted nucleic-acid 23.7 2.4E+02 0.0053 19.1 6.5 67 135-201 21-87 (130)
263 PF08044 DUF1707: Domain of un 23.4 1.2E+02 0.0025 17.3 2.6 33 172-204 5-38 (53)
264 PF04361 DUF494: Protein of un 23.1 2.9E+02 0.0062 19.7 5.4 45 135-183 3-48 (155)
265 COG5069 SAC6 Ca2+-binding acti 22.4 1.5E+02 0.0033 25.5 4.1 64 40-104 486-549 (612)
266 PRK01844 hypothetical protein; 22.3 2E+02 0.0043 17.6 3.6 32 53-84 36-67 (72)
267 PF06648 DUF1160: Protein of u 21.6 2.4E+02 0.0052 19.3 4.3 44 39-85 37-81 (122)
268 KOG0039 Ferric reductase, NADH 21.6 2.5E+02 0.0054 25.3 5.5 87 56-164 4-90 (646)
269 COG2818 Tag 3-methyladenine DN 21.4 99 0.0021 22.9 2.5 34 132-165 52-85 (188)
270 PF07128 DUF1380: Protein of u 21.3 1.8E+02 0.0038 20.4 3.6 50 55-104 26-80 (139)
271 PLN00138 large subunit ribosom 21.2 2.7E+02 0.0059 18.7 5.4 42 139-182 5-46 (113)
272 PF13551 HTH_29: Winged helix- 20.9 2.4E+02 0.0052 18.0 5.7 52 33-84 58-111 (112)
273 TIGR03573 WbuX N-acetyl sugar 20.9 2.4E+02 0.0052 22.9 5.0 14 54-67 301-314 (343)
274 COG4359 Uncharacterized conser 20.7 2.1E+02 0.0044 21.4 4.0 14 149-162 11-24 (220)
275 cd00086 homeodomain Homeodomai 20.7 1.7E+02 0.0036 16.2 5.5 42 131-181 9-50 (59)
276 PF13623 SurA_N_2: SurA N-term 20.7 3.1E+02 0.0068 19.3 7.3 41 156-198 94-144 (145)
277 smart00222 Sec7 Sec7 domain. D 20.6 3.5E+02 0.0076 19.8 11.3 37 146-182 146-182 (187)
278 cd07357 HN_L-whirlin_R2_like S 20.5 1.2E+02 0.0025 19.0 2.4 33 171-203 17-49 (81)
279 KOG0113 U1 small nuclear ribon 20.2 2.4E+02 0.0052 22.7 4.5 85 39-146 41-127 (335)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=167.78 Aligned_cols=147 Identities=31% Similarity=0.542 Sum_probs=136.8
Q ss_pred ccccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccc
Q 028589 29 FRLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETF 108 (207)
Q Consensus 29 ~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 108 (207)
.....+..++++|+++|..+|++++|.|++.+|..+++.+|.+++++++..++..+|. +.+.|+|.+|+.++...
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~---- 84 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK---- 84 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH----
Confidence 3446678899999999999999999999999999999999999999999999999999 88999999999999888
Q ss_pred cccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCC
Q 028589 109 FPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDG 188 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g 188 (207)
.......++++.+|+.||.|++|+|+..+|+.+++.+| ..+++++++.+++.+|.|++|
T Consensus 85 -------------------~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--e~~~deev~~ll~~~d~d~dG 143 (160)
T COG5126 85 -------------------LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--ERLSDEEVEKLLKEYDEDGDG 143 (160)
T ss_pred -------------------hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--ccCCHHHHHHHHHhcCCCCCc
Confidence 23455679999999999999999999999999999999 889999999999999999999
Q ss_pred ceeHHHHHHHHHH
Q 028589 189 RVDFFEFKNMMQS 201 (207)
Q Consensus 189 ~I~~~eF~~~l~~ 201 (207)
.|+|++|+..+..
T Consensus 144 ~i~~~eF~~~~~~ 156 (160)
T COG5126 144 EIDYEEFKKLIKD 156 (160)
T ss_pred eEeHHHHHHHHhc
Confidence 9999999998754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-25 Score=160.33 Aligned_cols=147 Identities=41% Similarity=0.636 Sum_probs=132.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccc
Q 028589 34 PSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLND 113 (207)
Q Consensus 34 ~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 113 (207)
+..+..++.++|..||.+++|+|+..++..+++.+|..++..++..++..+|.+++|.|++.+|+.++..........
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~-- 80 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE-- 80 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc--
Confidence 456778999999999999999999999999999999999999999999999999999999999999988761111000
Q ss_pred ccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHH
Q 028589 114 LTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFF 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~ 193 (207)
......++.+|+.||.+++|+|+..||+.+|..+| ...+.+++..+++.+|.|++|.|+|+
T Consensus 81 -----------------~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg--~~~~~~e~~~mi~~~d~d~dg~i~f~ 141 (151)
T KOG0027|consen 81 -----------------EASSEELKEAFRVFDKDGDGFISASELKKVLTSLG--EKLTDEECKEMIREVDVDGDGKVNFE 141 (151)
T ss_pred -----------------cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC--CcCCHHHHHHHHHhcCCCCCCeEeHH
Confidence 02356999999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHH
Q 028589 194 EFKNMMQS 201 (207)
Q Consensus 194 eF~~~l~~ 201 (207)
+|+.++..
T Consensus 142 ef~~~m~~ 149 (151)
T KOG0027|consen 142 EFVKMMSG 149 (151)
T ss_pred HHHHHHhc
Confidence 99998864
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4e-23 Score=142.31 Aligned_cols=147 Identities=29% Similarity=0.457 Sum_probs=135.9
Q ss_pred cccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccc
Q 028589 30 RLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFF 109 (207)
Q Consensus 30 ~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 109 (207)
+...++.+..+++..|..||.+++|+|+..||.-+++.+|..+...++.+++..+|.++.|.|+|++|...+...
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k----- 98 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK----- 98 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH-----
Confidence 334556777899999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCc
Q 028589 110 PLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGR 189 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~ 189 (207)
.......+++..+|+.+|.|++|.|+..+|+.+.+.+| +++|++++..++..+|.+.+|.
T Consensus 99 ------------------~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg--enltD~El~eMIeEAd~d~dge 158 (172)
T KOG0028|consen 99 ------------------LGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG--ENLTDEELMEMIEEADRDGDGE 158 (172)
T ss_pred ------------------HhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC--ccccHHHHHHHHHHhccccccc
Confidence 23445779999999999999999999999999999999 9999999999999999999999
Q ss_pred eeHHHHHHHHHH
Q 028589 190 VDFFEFKNMMQS 201 (207)
Q Consensus 190 I~~~eF~~~l~~ 201 (207)
|+-++|...++.
T Consensus 159 vneeEF~~imk~ 170 (172)
T KOG0028|consen 159 VNEEEFIRIMKK 170 (172)
T ss_pred ccHHHHHHHHhc
Confidence 999999998764
No 4
>PTZ00183 centrin; Provisional
Probab=99.91 E-value=1.5e-22 Score=145.71 Aligned_cols=144 Identities=33% Similarity=0.511 Sum_probs=129.6
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccc
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLN 112 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 112 (207)
.++.+..++..+|..+|.+++|.|+..||..++..+|..++...+..++..+|.+++|.|+|.+|+..+....
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~------- 83 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL------- 83 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-------
Confidence 4577788999999999999999999999999999999888999999999999999999999999999876541
Q ss_pred cccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeH
Q 028589 113 DLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDF 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~ 192 (207)
........++.+|+.+|.+++|.|+..+|..++..+| ..++..++..++..+|.+++|.|+|
T Consensus 84 ----------------~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l~~~~~~~~~~~~d~~~~g~i~~ 145 (158)
T PTZ00183 84 ----------------GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETITDEELQEMIDEADRNGDGEISE 145 (158)
T ss_pred ----------------cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 1112346789999999999999999999999999998 7789999999999999999999999
Q ss_pred HHHHHHHHH
Q 028589 193 FEFKNMMQS 201 (207)
Q Consensus 193 ~eF~~~l~~ 201 (207)
++|..++..
T Consensus 146 ~ef~~~~~~ 154 (158)
T PTZ00183 146 EEFYRIMKK 154 (158)
T ss_pred HHHHHHHhc
Confidence 999998865
No 5
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=4.7e-22 Score=136.08 Aligned_cols=151 Identities=23% Similarity=0.397 Sum_probs=134.9
Q ss_pred ccCCCCCccccccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028589 20 SRRPSSSSSFRLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVS 99 (207)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 99 (207)
..++.+++.+.+ .++.|+.+++++|..+|.|++|.|++++++.++.++|...++++++.++... .|.|+|.-|+.
T Consensus 14 ra~rasSnvFam-f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLT 88 (171)
T KOG0031|consen 14 RAKRASSNVFAM-FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLT 88 (171)
T ss_pred hhccccchHHHH-hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHH
Confidence 344455555554 4566899999999999999999999999999999999999999999999876 47899999999
Q ss_pred HHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 028589 100 LHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMI 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~ 179 (207)
++... -......+.+..+|+.||.+++|+|..+.|+.+|...| ..++++||+.++
T Consensus 89 mfGek-----------------------L~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--Dr~~~eEV~~m~ 143 (171)
T KOG0031|consen 89 MFGEK-----------------------LNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG--DRFTDEEVDEMY 143 (171)
T ss_pred HHHHH-----------------------hcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc--ccCCHHHHHHHH
Confidence 98766 24556678999999999999999999999999999999 889999999999
Q ss_pred HhhcCCCCCceeHHHHHHHHH
Q 028589 180 GSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 180 ~~~d~d~~g~I~~~eF~~~l~ 200 (207)
+.+-.|..|.|+|..|+..+.
T Consensus 144 r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 144 REAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HhCCcccCCceeHHHHHHHHH
Confidence 999999999999999999886
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.89 E-value=6.4e-22 Score=140.89 Aligned_cols=143 Identities=37% Similarity=0.596 Sum_probs=127.8
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccc
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLN 112 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 112 (207)
.+..+.+.+...|..+|.+++|.|+.+||..++..++..++...+..++..+|.+++|.|+|++|+.++....
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~------- 77 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM------- 77 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc-------
Confidence 3466778999999999999999999999999999999888999999999999999999999999999887540
Q ss_pred cccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeH
Q 028589 113 DLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDF 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~ 192 (207)
........+..+|+.+|.+++|.|+.++|..++..+| ..++.+++..++..+|.+++|.|+|
T Consensus 78 ----------------~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~ 139 (149)
T PTZ00184 78 ----------------KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINY 139 (149)
T ss_pred ----------------cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCCHHHHHHHHHhcCCCCCCcCcH
Confidence 1112345788999999999999999999999999998 6788999999999999999999999
Q ss_pred HHHHHHHH
Q 028589 193 FEFKNMMQ 200 (207)
Q Consensus 193 ~eF~~~l~ 200 (207)
.||+.++.
T Consensus 140 ~ef~~~~~ 147 (149)
T PTZ00184 140 EEFVKMMM 147 (149)
T ss_pred HHHHHHHh
Confidence 99998875
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-21 Score=140.30 Aligned_cols=136 Identities=24% Similarity=0.329 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccc
Q 028589 37 NTLRLRRVFDMFDKNGDGMITVKELHQALNLLGL-ETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLT 115 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 115 (207)
....+...|...|++++|.|+.+|+..+|..... .++.+.++.++.++|.+..|+|.++||..+|..+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----------- 123 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----------- 123 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-----------
Confidence 4468899999999999999999999999986544 6899999999999999999999999999999888
Q ss_pred ccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHH
Q 028589 116 STATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEF 195 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF 195 (207)
..++.+|+.||.|++|.|+..||+++|..+| -.+++.-++.|++++|....|.|.+++|
T Consensus 124 -------------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G--y~Lspq~~~~lv~kyd~~~~g~i~FD~F 182 (221)
T KOG0037|consen 124 -------------------NQWRNVFRTYDRDRSGTIDSSELRQALTQLG--YRLSPQFYNLLVRKYDRFGGGRIDFDDF 182 (221)
T ss_pred -------------------HHHHHHHHhcccCCCCcccHHHHHHHHHHcC--cCCCHHHHHHHHHHhccccCCceeHHHH
Confidence 8999999999999999999999999999999 6688899999999999888999999999
Q ss_pred HHHHHHHHh
Q 028589 196 KNMMQSVLV 204 (207)
Q Consensus 196 ~~~l~~~~~ 204 (207)
++.+..+..
T Consensus 183 I~ccv~L~~ 191 (221)
T KOG0037|consen 183 IQCCVVLQR 191 (221)
T ss_pred HHHHHHHHH
Confidence 999987653
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=7.3e-21 Score=128.15 Aligned_cols=142 Identities=23% Similarity=0.436 Sum_probs=125.7
Q ss_pred chhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHhhhhccccccc
Q 028589 35 SLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKP--GNDGLEFEDFVSLHESLDETFFPLN 112 (207)
Q Consensus 35 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~~~~ 112 (207)
+.+..+++++|..||..++|.|+..++..+|+.+|.+++.+++.+.+..+..+ +-.+|+|++|+.++......
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn----- 81 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN----- 81 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc-----
Confidence 44558999999999999999999999999999999999999999999999877 44789999999998877111
Q ss_pred cccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeH
Q 028589 113 DLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDF 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~ 192 (207)
......+....-.+.||++++|+|...+|+.+|..+| +.++++|++.++... .|.+|.|+|
T Consensus 82 ----------------k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG--ekl~eeEVe~Llag~-eD~nG~i~Y 142 (152)
T KOG0030|consen 82 ----------------KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG--EKLTEEEVEELLAGQ-EDSNGCINY 142 (152)
T ss_pred ----------------cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH--hhccHHHHHHHHccc-cccCCcCcH
Confidence 3334457778889999999999999999999999999 999999999999987 778999999
Q ss_pred HHHHHHHH
Q 028589 193 FEFKNMMQ 200 (207)
Q Consensus 193 ~eF~~~l~ 200 (207)
+.|++.+.
T Consensus 143 E~fVk~i~ 150 (152)
T KOG0030|consen 143 EAFVKHIM 150 (152)
T ss_pred HHHHHHHh
Confidence 99998764
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.81 E-value=8e-19 Score=127.72 Aligned_cols=141 Identities=30% Similarity=0.461 Sum_probs=116.8
Q ss_pred CCchhHHHHHHHHHHhcCC-CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHhhhhccccc
Q 028589 33 CPSLNTLRLRRVFDMFDKN-GDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDG-LEFEDFVSLHESLDETFFP 110 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~-i~~~eF~~~~~~~~~~~~~ 110 (207)
.+..++..+...|.++|.+ +.|+|+.+||..+... . ......+|+..++.+++|. |+|++|+..+..+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~---~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f------ 96 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-A---LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF------ 96 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH-h---cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh------
Confidence 4477889999999999999 9999999999999943 2 2356778888888888887 9999999999988
Q ss_pred cccccccccccchhhhhhcccHH-HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCc--HH----HHHHHHHhhc
Q 028589 111 LNDLTSTATTDADEGNKKVLSQE-EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNE--IA----RVQQMIGSVD 183 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t--~~----e~~~l~~~~d 183 (207)
..... .++++.+|+.||.+++|+|+++||.+++..+- +...+ ++ .++.++..+|
T Consensus 97 ------------------~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~-~~~~~~~~e~~~~i~d~t~~e~D 157 (187)
T KOG0034|consen 97 ------------------SPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV-GENDDMSDEQLEDIVDKTFEEAD 157 (187)
T ss_pred ------------------cCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH-ccCCcchHHHHHHHHHHHHHHhC
Confidence 33333 35999999999999999999999999999883 23333 33 3567888999
Q ss_pred CCCCCceeHHHHHHHHHHH
Q 028589 184 RNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 184 ~d~~g~I~~~eF~~~l~~~ 202 (207)
.|+||+|+++||.+++.+.
T Consensus 158 ~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 158 TDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CCCCCcCcHHHHHHHHHcC
Confidence 9999999999999988653
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.77 E-value=5.6e-18 Score=123.39 Aligned_cols=146 Identities=20% Similarity=0.352 Sum_probs=123.8
Q ss_pred cCCchhHHHHHHHHHHhcCC-CCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccc
Q 028589 32 RCPSLNTLRLRRVFDMFDKN-GDGMITVKELHQALNLLGL-ETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFF 109 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~l~~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 109 (207)
..+..+..+++..++.|-.+ .+|.|+.++|+.++.+++. .-+..-+..+|..+|.+++|.|+|.||+..++..
T Consensus 19 ~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~----- 93 (193)
T KOG0044|consen 19 QQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT----- 93 (193)
T ss_pred HhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-----
Confidence 45666777888888888765 5999999999999999986 4456688889999999999999999999999988
Q ss_pred ccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc----CC-----CCCCcHHHHHHHHH
Q 028589 110 PLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL----GL-----TEGNEIARVQQMIG 180 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~----~~-----~~~~t~~e~~~l~~ 180 (207)
......+.+..+|+.+|.|++|+|+++|+..++..+ |. ......+-++.+|+
T Consensus 94 -------------------~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~ 154 (193)
T KOG0044|consen 94 -------------------SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFS 154 (193)
T ss_pred -------------------cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHH
Confidence 677788899999999999999999999999999876 21 12223455799999
Q ss_pred hhcCCCCCceeHHHHHHHHHH
Q 028589 181 SVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 181 ~~d~d~~g~I~~~eF~~~l~~ 201 (207)
.+|.|.||.||++||+..+..
T Consensus 155 k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 155 KMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HcCCCCCCcccHHHHHHHhhh
Confidence 999999999999999988754
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.70 E-value=1.1e-15 Score=120.41 Aligned_cols=136 Identities=18% Similarity=0.343 Sum_probs=125.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccc
Q 028589 34 PSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLE-TDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLN 112 (207)
Q Consensus 34 ~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 112 (207)
.++...+++.+|..+|.+++|.|+..++...+..+..+ +....+..+++.+|.+.+|+|+|+||..++...
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-------- 80 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-------- 80 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh--------
Confidence 34455689999999999999999999999999999876 888899999999999999999999999987655
Q ss_pred cccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeH
Q 028589 113 DLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDF 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~ 192 (207)
+.++..+|+..|.++||.|+.+|+.+.|+.+| .++++++++.+++.+|.++.+.|++
T Consensus 81 ---------------------E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~de~~~k~~e~~d~~g~~~I~~ 137 (463)
T KOG0036|consen 81 ---------------------ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLSDEKAAKFFEHMDKDGKATIDL 137 (463)
T ss_pred ---------------------HHHHHHHHhhhccccCCccCHHHHHHHHHHhC--CccCHHHHHHHHHHhccCCCeeecc
Confidence 57788999999999999999999999999999 7899999999999999999999999
Q ss_pred HHHHHHHH
Q 028589 193 FEFKNMMQ 200 (207)
Q Consensus 193 ~eF~~~l~ 200 (207)
+||...+.
T Consensus 138 ~e~rd~~l 145 (463)
T KOG0036|consen 138 EEWRDHLL 145 (463)
T ss_pred HHHHhhhh
Confidence 99988764
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=4.8e-13 Score=113.67 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=91.6
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHhhhhccc
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLG-LETDLSE---LESTIASHVKPGNDGLEFEDFVSLHESLDETF 108 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 108 (207)
....+++++.++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+|.||+.++..+
T Consensus 137 f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l---- 208 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF---- 208 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh----
Confidence 445577899999999999999997 888999999 5888887 8999999999999999999999999866
Q ss_pred cccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 028589 109 FPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGK 163 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~ 163 (207)
......+++..+|+.||.|++|+|+.+||..++..
T Consensus 209 --------------------g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 209 --------------------GNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred --------------------ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 33345678999999999999999999999999998
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=4.2e-13 Score=86.47 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-cCCCCCCcH-HHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 133 EEADLSEAFKVFDE-DGDGFISAHELQVVLGK-LGLTEGNEI-ARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 133 ~~~~l~~~f~~~D~-d~~G~i~~~e~~~~l~~-~~~~~~~t~-~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
....++.+|+.||. +++|+|+..||+.+++. +| ..++. ++++.+++.+|.|++|.|+|+||+.++..+...
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg--~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLP--HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh--hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34778999999999 99999999999999999 77 66777 899999999999999999999999999887653
No 14
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.45 E-value=1.7e-12 Score=103.49 Aligned_cols=150 Identities=19% Similarity=0.322 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL-GLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTST 117 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 117 (207)
.++..-|+.+|.+.+|+|+...+..++..+ |+++....+..-+. ..+.+|.|.|.+....+..-...
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla--~~s~d~~v~Y~~~~~~l~~e~~~---------- 531 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLA--NGSDDGKVEYKSTLDNLDTEVIL---------- 531 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhcc--CCCcCcceehHhHHHHhhhhhHH----------
Confidence 478889999999999999999999999754 66776655554443 34457789999888765433000
Q ss_pred ccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCCCCcHHHHHHHHHhhcCCCCCceeHHHH
Q 028589 118 ATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLG--LTEGNEIARVQQMIGSVDRNHDGRVDFFEF 195 (207)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~--~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF 195 (207)
.+......++.......+..+|+.+|.|++|.|+.+||+++++.++ ....++..++.++.+.+|.|+||.|++.||
T Consensus 532 --~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEf 609 (631)
T KOG0377|consen 532 --EEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEF 609 (631)
T ss_pred --HHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHH
Confidence 0012223344555667799999999999999999999999999885 345688999999999999999999999999
Q ss_pred HHHHHHH
Q 028589 196 KNMMQSV 202 (207)
Q Consensus 196 ~~~l~~~ 202 (207)
+.+++-.
T Consensus 610 LeAFrlv 616 (631)
T KOG0377|consen 610 LEAFRLV 616 (631)
T ss_pred HHHHhhh
Confidence 9998743
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.4e-12 Score=100.28 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=121.7
Q ss_pred cccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccc
Q 028589 30 RLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFF 109 (207)
Q Consensus 30 ~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 109 (207)
.++...+..+++..++..+|.+++|+|+..|+..++..........++.+-|..+|.+.+|.|+|+++.........
T Consensus 68 d~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~--- 144 (325)
T KOG4223|consen 68 DQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD--- 144 (325)
T ss_pred hhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc---
Confidence 44555567789999999999999999999999999977655555678888899999999999999999998776521
Q ss_pred ccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCc
Q 028589 110 PLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGR 189 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~ 189 (207)
....................-+.-|++-|.|++|.++++||..+|..-.+ +.+..=.|..-+...|.|+||.
T Consensus 145 -------~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~-p~M~~iVi~Etl~d~Dkn~DG~ 216 (325)
T KOG4223|consen 145 -------LPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEH-PHMKDIVIAETLEDIDKNGDGK 216 (325)
T ss_pred -------CccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhc-chHHHHHHHHHHhhcccCCCCc
Confidence 11111112222334444455677899999999999999999999965532 2344445677888889999999
Q ss_pred eeHHHHHHHHH
Q 028589 190 VDFFEFKNMMQ 200 (207)
Q Consensus 190 I~~~eF~~~l~ 200 (207)
|+++||+.-+-
T Consensus 217 I~~eEfigd~~ 227 (325)
T KOG4223|consen 217 ISLEEFIGDLY 227 (325)
T ss_pred eeHHHHHhHHh
Confidence 99999997654
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.4e-12 Score=100.35 Aligned_cols=141 Identities=19% Similarity=0.238 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccc
Q 028589 37 NTLRLRRVFDMFDKNGDGMITVKELHQALNLLG-LETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLT 115 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 115 (207)
.+.+-++.|...|.|++|.++++||..+|.--- ..+..=.+..-+...|.|+||.|+++||+.-+.....
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~--------- 231 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG--------- 231 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC---------
Confidence 345678889999999999999999999885332 2344556777888999999999999999997765510
Q ss_pred ccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHH
Q 028589 116 STATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEF 195 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF 195 (207)
..........+-.+.+...|+|++|+|+.+|++.++...+ ......+..-|+...|.|+||++|++|-
T Consensus 232 ----------~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~--~d~A~~EA~hL~~eaD~dkD~kLs~eEI 299 (325)
T KOG4223|consen 232 ----------NEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSE--QDHAKAEARHLLHEADEDKDGKLSKEEI 299 (325)
T ss_pred ----------CCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCC--ccHHHHHHHHHhhhhccCccccccHHHH
Confidence 0112334445556788889999999999999999997666 4456688899999999999999999998
Q ss_pred HHH
Q 028589 196 KNM 198 (207)
Q Consensus 196 ~~~ 198 (207)
+.-
T Consensus 300 l~~ 302 (325)
T KOG4223|consen 300 LEH 302 (325)
T ss_pred hhC
Confidence 753
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.40 E-value=2.5e-12 Score=93.87 Aligned_cols=92 Identities=27% Similarity=0.409 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccc
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTST 117 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 117 (207)
+..|+.+|+.+|+|++|.|+..||+.+|..+|..++...++.|++++|..++|.|.|.+|++++..+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------------- 189 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------------- 189 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------------
Confidence 4588999999999999999999999999999999999999999999998878999999999999988
Q ss_pred ccccchhhhhhcccHHHHHHHHHHHhhcCCCCCccc--HHHHHH
Q 028589 118 ATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFIS--AHELQV 159 (207)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~--~~e~~~ 159 (207)
..+.++|+..|++..|.|+ .++|..
T Consensus 190 -----------------~~lt~~Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 190 -----------------QRLTEAFRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred -----------------HHHHHHHHHhccccceeEEEeHHHHHH
Confidence 8999999999999999664 445443
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.40 E-value=1.8e-12 Score=79.40 Aligned_cols=64 Identities=44% Similarity=0.688 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC--CCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 028589 136 DLSEAFKVFDEDGDGFISAHELQVVLGKLGLTE--GNEIARVQQMIGSVDRNHDGRVDFFEFKNMM 199 (207)
Q Consensus 136 ~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~--~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l 199 (207)
.++.+|+.+|.+++|.|+.+||..++..++... ....+.++.+++.+|.|++|.|+|+||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 368899999999999999999999999998321 1234456667999999999999999999875
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=7.9e-12 Score=89.25 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCccc
Q 028589 74 LSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFIS 153 (207)
Q Consensus 74 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~ 153 (207)
..++..+|..+|.+++|.|+-.++-..+..+ .......++..++..+|.+++|.|+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l------------------------g~~~t~~el~~~~~~~D~dg~g~I~ 62 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL------------------------GQNPTEEELRDLIKEIDLDGDGTID 62 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc------------------------CCCCCHHHHHHHHHHhCCCCCCeEc
Confidence 4678899999999999999999999999988 5566789999999999999999999
Q ss_pred HHHHHHHHHHcCCCCC---CcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 154 AHELQVVLGKLGLTEG---NEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 154 ~~e~~~~l~~~~~~~~---~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
..+|..++...+.... .+.+++..+|+.+|.|++|.|++.||.++|..+-.+
T Consensus 63 ~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 63 FEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred HHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 9999999998863222 135689999999999999999999999999887544
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.37 E-value=5.5e-12 Score=81.35 Aligned_cols=71 Identities=25% Similarity=0.438 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 133 EEADLSEAFKVFD-EDGDG-FISAHELQVVLGK-----LGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 133 ~~~~l~~~f~~~D-~d~~G-~i~~~e~~~~l~~-----~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
....++.+|+.|| .+++| .|+.++|+.+|+. .| ...++++++.+++.+|.|++|.|+|++|+.++.....+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg--~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE--EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3467899999998 79999 5999999999999 77 66788999999999999999999999999999877653
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.36 E-value=5.5e-12 Score=77.18 Aligned_cols=62 Identities=31% Similarity=0.612 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLLGLETDL----SELESTIASHVKPGNDGLEFEDFVSLH 101 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~----~~~~~l~~~~d~~~~g~i~~~eF~~~~ 101 (207)
+++++|..+|.+++|+|+.+||..++..++...+. ..++.+++.+|.+++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999876544 456666999999999999999999874
No 22
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.35 E-value=7e-12 Score=85.65 Aligned_cols=101 Identities=25% Similarity=0.462 Sum_probs=84.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHH
Q 028589 77 LESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHE 156 (207)
Q Consensus 77 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e 156 (207)
-++|+..+..+|.|.++|.+|+.+++.+ ...-...-++..+|+.+|-|++++|...+
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~-----------------------sE~APrdlK~~YAFkIYDfd~D~~i~~~D 129 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVF-----------------------SEMAPRDLKAKYAFKIYDFDGDEFIGHDD 129 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHH-----------------------HhhChHHhhhhheeEEeecCCCCcccHHH
Confidence 3567788889999999999999999988 22233446788999999999999999999
Q ss_pred HHHHHHHcCCCCCCcHHHH----HHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 157 LQVVLGKLGLTEGNEIARV----QQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 157 ~~~~l~~~~~~~~~t~~e~----~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
+...+..+.. ..++++|+ ++++..+|.|+||+|++.||..++..
T Consensus 130 L~~~l~~lTr-~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 130 LEKTLTSLTR-DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHhh-ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 9999999853 34777775 56778889999999999999998764
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.34 E-value=6.7e-12 Score=80.86 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcC-CCCCceeHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFDK-NGDGMITVKELHQALNL-LGLETDL-SELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D~-~~~g~i~~~e~~~~l~~-l~~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.+..+..+|+.||. +++|+|+..||+.+|.. ++..++. .+++.+++.+|.|+||.|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45688999999999 99999999999999998 8877777 999999999999999999999999998776
No 24
>PTZ00183 centrin; Provisional
Probab=99.32 E-value=3.8e-11 Score=86.09 Aligned_cols=104 Identities=14% Similarity=0.255 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCccc
Q 028589 74 LSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFIS 153 (207)
Q Consensus 74 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~ 153 (207)
..++..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~------------------------g~~~~~~~~~~l~~~~d~~~~g~i~ 71 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSL------------------------GFEPKKEEIKQMIADVDKDGSGKID 71 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh------------------------CCCCCHHHHHHHHHHhCCCCCCcEe
Confidence 3467788999999999999999999998765 2222345788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 154 AHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 154 ~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
..+|..++...- ........+..+|+.+|.+++|.|++.||..++..+
T Consensus 72 ~~eF~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 72 FEEFLDIMTKKL-GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHHHHh-cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 999999887642 133466789999999999999999999999998754
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.30 E-value=2e-11 Score=89.20 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTA 118 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 118 (207)
...+.+|..||.+++|.|+..||..+|..+......+-+...|+.+|.+++|.|+++|++.++.........
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~-------- 135 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS-------- 135 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc--------
Confidence 577889999999999999999999999988777777888888999999999999999999998766222221
Q ss_pred cccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 119 TTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
................+|+.+|.|++|.||.+||...+..-
T Consensus 136 -----~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 136 -----KALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred -----ccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 01112345567888999999999999999999999887543
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.28 E-value=3.8e-11 Score=77.43 Aligned_cols=70 Identities=23% Similarity=0.447 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---cCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 133 EEADLSEAFKVFDE-DG-DGFISAHELQVVLGK---LGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 133 ~~~~l~~~f~~~D~-d~-~G~i~~~e~~~~l~~---~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
....+..+|+.||. +| +|+|+.+||+.++.. +| ..++++++..+++.+|.|++|+|+|+||+.++..+..
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg--~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG--SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 34678899999998 77 899999999999974 46 7789999999999999999999999999999988754
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=3.4e-11 Score=77.67 Aligned_cols=68 Identities=18% Similarity=0.365 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFD-KNGDG-MITVKELHQALNL-----LGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
-+..+.++|..|| ++++| .|+..||+.+|+. +|...++.+++.+++.+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568999999998 79999 6999999999998 8888999999999999999999999999999988765
No 28
>PTZ00184 calmodulin; Provisional
Probab=99.26 E-value=1.4e-10 Score=82.27 Aligned_cols=103 Identities=18% Similarity=0.349 Sum_probs=85.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccH
Q 028589 75 SELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISA 154 (207)
Q Consensus 75 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~ 154 (207)
..+...|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~------------------------~~~~~~~~~~~~~~~~d~~~~g~i~~ 66 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL------------------------GQNPTEAELQDMINEVDADGNGTIDF 66 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh------------------------CCCCCHHHHHHHHHhcCcCCCCcCcH
Confidence 456678899999999999999999988665 22223467899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 155 HELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 155 ~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
++|..++.... ........+..+|..+|.+++|.|+..+|..++...
T Consensus 67 ~ef~~~l~~~~-~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 67 PEFLTLMARKM-KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHHHhc-cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999988652 133456678999999999999999999999988754
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.25 E-value=6e-11 Score=77.47 Aligned_cols=73 Identities=27% Similarity=0.441 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-cCC--CCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 133 EEADLSEAFKVFD-EDGDG-FISAHELQVVLGK-LGL--TEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 133 ~~~~l~~~f~~~D-~d~~G-~i~~~e~~~~l~~-~~~--~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
..+.++.+|+.|| .+++| .|+..+|+.+|+. +|. +...+.++++.++..+|.+++|.|+|++|+.++..+.++
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3477999999997 99999 5999999999986 541 134588999999999999999999999999999887653
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=5.2e-11 Score=77.77 Aligned_cols=73 Identities=26% Similarity=0.427 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHHc-C--CCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 133 EEADLSEAFKVFD-EDGDG-FISAHELQVVLGKL-G--LTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 133 ~~~~l~~~f~~~D-~d~~G-~i~~~e~~~~l~~~-~--~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
....+..+|+.|| .|++| .|+..||+.++... + .....++.+++.++..+|.|++|.|+|+||+.++..+..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3467888999999 78998 59999999999773 2 0133477899999999999999999999999999887653
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=81.58 Aligned_cols=105 Identities=17% Similarity=0.318 Sum_probs=90.9
Q ss_pred CCHH---HHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCC
Q 028589 72 TDLS---ELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDG 148 (207)
Q Consensus 72 ~~~~---~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~ 148 (207)
++.+ ++...|..+|.+++|.|++.++..++..+ ........+..+|..+|. +
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l------------------------g~~~s~~ei~~l~~~~d~-~ 68 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSL------------------------GFNPSEAEINKLFEEIDA-G 68 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc------------------------CCCCcHHHHHHHHHhccC-C
Confidence 4544 45566888899999999999999999877 666778899999999999 9
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 149 DGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 149 ~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
+|.|+..+|..+|...- ...-+.+++...|+.+|.|++|+|++.++...+..+
T Consensus 69 ~~~idf~~Fl~~ms~~~-~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 69 NETVDFPEFLTVMSVKL-KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred CCccCHHHHHHHHHHHh-ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh
Confidence 99999999999998873 244578999999999999999999999999998754
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.21 E-value=1.1e-10 Score=76.49 Aligned_cols=72 Identities=26% Similarity=0.501 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-cC--CCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 133 EEADLSEAFKVFDE-DG-DGFISAHELQVVLGK-LG--LTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 133 ~~~~l~~~f~~~D~-d~-~G~i~~~e~~~~l~~-~~--~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
....+..+|..||. ++ +|.|+..||+.+++. +| .+...+.++++.++..+|.+++|.|+|++|+.++...-.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 35778999999997 97 799999999999986 22 115678899999999999999999999999998876543
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.19 E-value=2e-10 Score=75.63 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=64.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 34 PSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 34 ~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
++.++..+..+|..+|.+++|.|+..++..+++.++ ++..++..++..+|.+++|.|+|++|+.++...
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 466888999999999999999999999999999876 688999999999999999999999999998777
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.18 E-value=1.9e-10 Score=70.39 Aligned_cols=64 Identities=33% Similarity=0.514 Sum_probs=58.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 138 SEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 138 ~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
+.+|..+|.+++|.|+.+|+..++...| .+.+++..++..+|.+++|.|+|.+|+.++.....+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999887 377889999999999999999999999999877654
No 35
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.5e-10 Score=67.78 Aligned_cols=52 Identities=35% Similarity=0.494 Sum_probs=48.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCC-CcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 148 GDGFISAHELQVVLGKLGLTEG-NEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 148 ~~G~i~~~e~~~~l~~~~~~~~-~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
++|.|+.++|+.+|..+| .. ++++++..||..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g--~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG--IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT--SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC--CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998888 66 89999999999999999999999999999875
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=2.9e-10 Score=74.84 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 132 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 132 ~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
.....+..+|..+|.+++|.|+.++|+.+++..| ++.+++..++..+|.+.+|.|+|++|+.++.....
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999876 57789999999999999999999999999887643
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.14 E-value=5.1e-10 Score=72.29 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHcC---CCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 132 QEEADLSEAFKV-FDEDGDG-FISAHELQVVLGKLG---LTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 132 ~~~~~l~~~f~~-~D~d~~G-~i~~~e~~~~l~~~~---~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
.....+..+|+. +|.+++| .|+.+||+.++.... .....++.+++.+++.+|.|++|.|+|+||+.++..+...
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 345778899999 7888876 999999999998872 0134567889999999999999999999999999887653
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=3.8e-10 Score=73.04 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-cCCC--CCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 133 EEADLSEAFKVFDE--DGDGFISAHELQVVLGK-LGLT--EGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 133 ~~~~l~~~f~~~D~--d~~G~i~~~e~~~~l~~-~~~~--~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
....++.+|..||. +++|.|+.++|..+++. +|.. ...+..++..++..+|.+++|.|+|++|+.++.....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 45678999999999 89999999999999986 4521 2246889999999999999999999999999887643
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.13 E-value=4.8e-10 Score=73.17 Aligned_cols=67 Identities=27% Similarity=0.449 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 38 TLRLRRVFDMFD-KNGDG-MITVKELHQALNL-LG----LETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 38 ~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-l~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
...+.++|..|| .+++| .|+..||+.+|+. +| ..++..+++.+++.+|.+++|.|+|.+|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 367999999997 99999 5999999999975 44 35688999999999999999999999999988766
No 40
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.13 E-value=4.4e-10 Score=73.67 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcC-CC-CCceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 38 TLRLRRVFDMFDK-NG-DGMITVKELHQALNL-----LGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 38 ~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
...+..+|..||. ++ +|.|+..||..+|.. ++..++..++..++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678999999997 87 799999999999986 5667899999999999999999999999999988765
No 41
>PF14658 EF-hand_9: EF-hand domain
Probab=99.12 E-value=3.5e-10 Score=67.59 Aligned_cols=64 Identities=25% Similarity=0.407 Sum_probs=58.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCC-CceeHHHHHHHHHHHH
Q 028589 139 EAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHD-GRVDFFEFKNMMQSVL 203 (207)
Q Consensus 139 ~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~-g~I~~~eF~~~l~~~~ 203 (207)
.+|..||.++.|.|...++..+|+..+.. ..++.+++.+...+|+++. |.|+++.|+..|+.++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 36999999999999999999999999842 6788899999999999987 9999999999999864
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.11 E-value=6.5e-10 Score=71.68 Aligned_cols=69 Identities=16% Similarity=0.342 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhcC-CC-CCceeHHHHHHHHH---HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 36 LNTLRLRRVFDMFDK-NG-DGMITVKELHQALN---LLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 36 ~~~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~---~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..+..+-.+|..+|. ++ +|+|+..||+.+|. .+|..++.+++..+++.+|.+++|.|+|+||+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 345678899999998 67 89999999999996 36888999999999999999999999999999988766
No 43
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.09 E-value=8.7e-10 Score=72.00 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFD-KNGDG-MITVKELHQALNLL-----GLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~l-----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.+..+.++|..|| .|++| .|+..||+.++... ....+..++..+++.+|.+++|.|+|+||+.++..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3467888899999 78998 59999999999762 334577899999999999999999999999998766
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.08 E-value=6.3e-10 Score=72.00 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHhcC--CCCCceeHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 35 SLNTLRLRRVFDMFDK--NGDGMITVKELHQALNL-LGLE----TDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 35 ~~~~~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~-l~~~----~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+.+++.+..+|..+|. +++|.|+..+|..+++. ++.. .+..++..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4567889999999999 89999999999999976 4543 458999999999999999999999999988665
No 45
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.08 E-value=7e-10 Score=64.94 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=48.7
Q ss_pred CCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028589 52 GDGMITVKELHQALNLLGLE-TDLSELESTIASHVKPGNDGLEFEDFVSLHES 103 (207)
Q Consensus 52 ~~g~i~~~e~~~~l~~l~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 103 (207)
.+|.|+.++|+.+|..+|.. ++..++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999998753
No 46
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.07 E-value=1.1e-09 Score=88.08 Aligned_cols=127 Identities=18% Similarity=0.259 Sum_probs=103.9
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHhhhhcccccccccccccc
Q 028589 44 VFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIAS----HVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTAT 119 (207)
Q Consensus 44 ~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~----~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
.|-.+|.|++|.|+.+++...-... ++.--+++||+. .-.-.+|+++|++|+.++...
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~--------------- 344 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE--------------- 344 (493)
T ss_pred HHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh---------------
Confidence 3778899999999999998876544 457788999982 223457899999999999888
Q ss_pred ccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc-------CCCCCCcHHHHHHHHHhhcCCCCCceeH
Q 028589 120 TDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL-------GLTEGNEIARVQQMIGSVDRNHDGRVDF 192 (207)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~-------~~~~~~t~~e~~~l~~~~d~d~~g~I~~ 192 (207)
..+....-++..|+.+|.+++|.|+..|++-+.... |.....-+..+.+|+..+.+...++|++
T Consensus 345 ---------e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItL 415 (493)
T KOG2562|consen 345 ---------EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITL 415 (493)
T ss_pred ---------ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeH
Confidence 677777889999999999999999999998777643 4333344566789999999889999999
Q ss_pred HHHHH
Q 028589 193 FEFKN 197 (207)
Q Consensus 193 ~eF~~ 197 (207)
++|..
T Consensus 416 qDlk~ 420 (493)
T KOG2562|consen 416 QDLKG 420 (493)
T ss_pred HHHhh
Confidence 99986
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.07 E-value=7e-10 Score=67.83 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 42 RRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 42 ~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+++|..+|.+++|.|+..|+..++..+| .+..++..++..+|.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999887 488899999999999999999999999988665
No 48
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=3.2e-09 Score=73.97 Aligned_cols=103 Identities=13% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCccc
Q 028589 74 LSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFIS 153 (207)
Q Consensus 74 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~ 153 (207)
..++...|..++.+++|+|.++|+...+..+ .......++..+..-+|++++|.|+
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmral------------------------GFE~~k~ei~kll~d~dk~~~g~i~ 87 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRAL------------------------GFEPKKEEILKLLADVDKEGSGKIT 87 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHc------------------------CCCcchHHHHHHHHhhhhccCceec
Confidence 3578888999999999999999997776666 4555667888899999999999999
Q ss_pred HHHHHHHHHHc-CCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 154 AHELQVVLGKL-GLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 154 ~~e~~~~l~~~-~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
.++|...+... + ..-+.+++...|+.+|.|.+|.||..+|......+
T Consensus 88 fe~f~~~mt~k~~--e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 88 FEDFRRVMTVKLG--ERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred hHHHHHHHHHHHh--ccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh
Confidence 99999997754 4 55599999999999999999999999999887654
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.05 E-value=3.9e-09 Score=77.18 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCCCc-eeHHHHHHHHHHhCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGM-ITVKELHQALNLLGLETDLS-ELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTS 116 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~-i~~~e~~~~l~~l~~~~~~~-~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 116 (207)
....+++..|+.+++|. |+.++|...+..+....... -++-.|+.||.+++|.|+.+|+...+..+...-.
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~------- 138 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGEND------- 138 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC-------
Confidence 35678899999999998 99999999999887665555 8899999999999999999999999988711100
Q ss_pred cccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 117 TATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
. .........+...|..+|.|++|.|+.+||..++...
T Consensus 139 ---------~-~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 139 ---------D-MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ---------c-chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 0 0123445678889999999999999999999998665
No 50
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.05 E-value=1.6e-09 Score=64.63 Aligned_cols=61 Identities=51% Similarity=0.862 Sum_probs=56.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 028589 137 LSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMM 199 (207)
Q Consensus 137 l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l 199 (207)
+..+|..+|.+++|.|+.++|..+++.++ ...+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG--EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999998 77888999999999999999999999998865
No 51
>PLN02964 phosphatidylserine decarboxylase
Probab=99.04 E-value=2.9e-09 Score=91.01 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCccc
Q 028589 74 LSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFIS 153 (207)
Q Consensus 74 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~ 153 (207)
..++...|..+|.+++|.+ +...+..+... .........++.+|+.+|.|++|.|+
T Consensus 142 i~elkeaF~lfD~dgdG~i-Lg~ilrslG~~-----------------------~pte~e~~fi~~mf~~~D~DgdG~Id 197 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV-VGSIFVSCSIE-----------------------DPVETERSFARRILAIVDYDEDGQLS 197 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC-HHHHHHHhCCC-----------------------CCCHHHHHHHHHHHHHhCCCCCCeEc
Confidence 3577888999999999986 33333332210 01112223589999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 154 AHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 154 ~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
.+||..++..++ ...+++++..+|+.+|.|++|.|+++||..++...
T Consensus 198 fdEFl~lL~~lg--~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 198 FSEFSDLIKAFG--NLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999887 66788999999999999999999999999998874
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.03 E-value=1.4e-09 Score=64.92 Aligned_cols=61 Identities=39% Similarity=0.678 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028589 41 LRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLH 101 (207)
Q Consensus 41 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 101 (207)
+..+|..+|.+++|.|+..+|..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999998865
No 53
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.4e-09 Score=86.97 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=116.7
Q ss_pred cCCCCCccccccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhC-CCCC--HHHHHHHHHhhCCCCCCcccHHHH
Q 028589 21 RRPSSSSSFRLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLG-LETD--LSELESTIASHVKPGNDGLEFEDF 97 (207)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~--~~~~~~l~~~~d~~~~g~i~~~eF 97 (207)
.....+-.+.+.....|++-++--|..+|+..+|.|+..+|..+|-... .+.. ....+++-+.++.+ +..|+++||
T Consensus 300 ~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef 378 (489)
T KOG2643|consen 300 NGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEF 378 (489)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHH
Confidence 3333444455566777888888889999999999999999998886553 2222 22566777777665 456999999
Q ss_pred HHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHH
Q 028589 98 VSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQ 177 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~ 177 (207)
..++.-+ ++...+..+...| ....+.|+..+|+++.... .+..+++-.++.
T Consensus 379 ~~Ff~Fl---------------------------~~l~dfd~Al~fy-~~Ag~~i~~~~f~raa~~v-tGveLSdhVvdv 429 (489)
T KOG2643|consen 379 KAFFRFL---------------------------NNLNDFDIALRFY-HMAGASIDEKTFQRAAKVV-TGVELSDHVVDV 429 (489)
T ss_pred HHHHHHH---------------------------hhhhHHHHHHHHH-HHcCCCCCHHHHHHHHHHh-cCcccccceeee
Confidence 9998777 3334444444444 3456889999999999876 237788788999
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 178 MIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 178 l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
+|..+|.|+||.|+++||+..|++.+.+
T Consensus 430 vF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 430 VFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred EEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 9999999999999999999999998765
No 54
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.02 E-value=1.6e-09 Score=97.14 Aligned_cols=135 Identities=17% Similarity=0.298 Sum_probs=105.6
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCC--C-----HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLET--D-----LSELESTIASHVKPGNDGLEFEDFVSLHESLD 105 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~--~-----~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 105 (207)
-+..+..++.-+|.+||++.+|.|+..+|..||+++|+.+ . +.+++.++...|++.+|+|+.++|+.+|...
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~- 2325 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK- 2325 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc-
Confidence 3577889999999999999999999999999999999876 2 3489999999999999999999999999776
Q ss_pred ccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHH----HHHHHh
Q 028589 106 ETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARV----QQMIGS 181 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~----~~l~~~ 181 (207)
+...-.....+..+|+.+|. +..+|+.+++..-| |.++. ..|-..
T Consensus 2326 ---------------------ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l---------treqaefc~s~m~~~ 2374 (2399)
T KOG0040|consen 2326 ---------------------ETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL---------TREQAEFCMSKMKPY 2374 (2399)
T ss_pred ---------------------ccccccchHHHHHHHHHhhc-CCccccHHHHHhcC---------CHHHHHHHHHHhhhh
Confidence 11222233489999999998 88899999876554 33333 333344
Q ss_pred hcCC----CCCceeHHHHHHHH
Q 028589 182 VDRN----HDGRVDFFEFKNMM 199 (207)
Q Consensus 182 ~d~d----~~g~I~~~eF~~~l 199 (207)
++.. ..+.+.|.+|++.+
T Consensus 2375 ~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2375 AETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccCCCccccccHHHHHHHH
Confidence 4442 34568999998765
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=4.9e-09 Score=67.71 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcCC--CCCcccHHHHHHHHH-HcCCCCCCc----HHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 133 EEADLSEAFKVFDED--GDGFISAHELQVVLG-KLGLTEGNE----IARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d--~~G~i~~~e~~~~l~-~~~~~~~~t----~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
....+..+|+.++.. ++|.|+.+||+.++. .+| ..++ +++++.+|..+|.+++|.|+|++|+.++..+..
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g--~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP--NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh--HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 346788899999866 489999999999997 555 4455 899999999999999999999999999987764
No 56
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.94 E-value=9.9e-09 Score=82.20 Aligned_cols=133 Identities=23% Similarity=0.368 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh------CCC----CCHH-----HH--HHHHHhhCCCCCCcccHHHHHHHH
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL------GLE----TDLS-----EL--ESTIASHVKPGNDGLEFEDFVSLH 101 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l------~~~----~~~~-----~~--~~l~~~~d~~~~g~i~~~eF~~~~ 101 (207)
..++-+|+.||.|++|.|+++||..+.+.+ |.. ++.. ++ .-+...|..++++++++++|..++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 467778999999999999999999888533 210 1111 11 124456788999999999999999
Q ss_pred hhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHH--HHHHHH
Q 028589 102 ESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIA--RVQQMI 179 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~--e~~~l~ 179 (207)
..+ ..+.++.-|..+|+..+|.|+..+|..+|-.... .+.... .+..+-
T Consensus 313 e~L----------------------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~-~n~~~k~~~lkrvk 363 (489)
T KOG2643|consen 313 ENL----------------------------QEEILELEFERFDKGDSGAISEVDFAELLLAYAG-VNSKKKHKYLKRVK 363 (489)
T ss_pred HHH----------------------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcc-cchHhHHHHHHHHH
Confidence 888 4466777799999999999999999999987741 221111 244555
Q ss_pred HhhcCCCCCceeHHHHHHHHHH
Q 028589 180 GSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 180 ~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
+.++.+ +..||++||..+++-
T Consensus 364 ~kf~~~-~~gISl~Ef~~Ff~F 384 (489)
T KOG2643|consen 364 EKFKDD-GKGISLQEFKAFFRF 384 (489)
T ss_pred HhccCC-CCCcCHHHHHHHHHH
Confidence 566544 667999999888764
No 57
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.94 E-value=1.4e-08 Score=80.83 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccc
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTST 117 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 117 (207)
-.....+|..+|.+.+|.++.+||+..+. -.+.++..+|+..|.+.||.|..+|....+...
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~------------- 111 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL------------- 111 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHh-------------
Confidence 35678899999999999999999999998 456889999999999999999999999999888
Q ss_pred ccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh------cCCCCCcee
Q 028589 118 ATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV------DRNHDGRVD 191 (207)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~------d~d~~g~I~ 191 (207)
...-..+++..+|+..|+++++.|+.+|+++.+.... ++.++.++..| |.+++..|.
T Consensus 112 -----------gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p------~s~i~di~~~W~h~~~idigE~~~iP 174 (463)
T KOG0036|consen 112 -----------GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP------ESDLEDIYDFWRHVLLIDIGEDAVLP 174 (463)
T ss_pred -----------CCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC------hhHHHHHHHhhhhheEEEccccccCC
Confidence 4445567788899999999999999999999985442 45566665443 777788787
Q ss_pred HHHHHHHHH
Q 028589 192 FFEFKNMMQ 200 (207)
Q Consensus 192 ~~eF~~~l~ 200 (207)
++|....+
T Consensus 175 -dg~s~~e~ 182 (463)
T KOG0036|consen 175 -DGDSKLEN 182 (463)
T ss_pred -cchHHHHh
Confidence 66665543
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.94 E-value=9.1e-09 Score=66.45 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=58.9
Q ss_pred hHHHHHHHHHH-hcCCCCC-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDM-FDKNGDG-MITVKELHQALNLL-----GLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~-~D~~~~g-~i~~~e~~~~l~~l-----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.+..|..+|.. +|.+++| .|+..||..++..- +......++..+++.+|.++||.|+|+||+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45688999999 7788876 99999999999765 335677899999999999999999999999988766
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=98.93 E-value=6.3e-09 Score=62.23 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHhhh
Q 028589 43 RVFDMFDKNGDGMITVKELHQALNLLGL-ETDLSELESTIASHVKPGN-DGLEFEDFVSLHESL 104 (207)
Q Consensus 43 ~~F~~~D~~~~g~i~~~e~~~~l~~l~~-~~~~~~~~~l~~~~d~~~~-g~i~~~eF~~~~~~~ 104 (207)
.+|..||.++.|.|...++..+|+.++. .+.+.+++.+...+|+++. |.|+++.|+..|...
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3699999999999999999999999988 8999999999999999987 999999999988653
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.92 E-value=6.9e-09 Score=70.16 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 131 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 131 ~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
......+..+|..+|.|++|.|+.+||..+. ++ ..+..+..+|..+|.|++|.||++||...+.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD----PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3455789999999999999999999999886 32 3456689999999999999999999999883
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=73.82 Aligned_cols=69 Identities=35% Similarity=0.576 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
....+..+|+.+|.+.+|+|+..||+.+|..+| .+.|.--+..+++..|.|.+|+|+|.+|+-.++...
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg--apQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLG--APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhC--CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 457788899999999999999999999999999 778998999999999999999999999999888653
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.82 E-value=2.4e-08 Score=67.52 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028589 34 PSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLH 101 (207)
Q Consensus 34 ~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 101 (207)
.+.....+.-.|..+|.|++|.|+..|+..+. ....+..+..++..+|.|+||.|+++||+..+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 35567889999999999999999999999876 33567889999999999999999999999998
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.74 E-value=5.3e-08 Score=62.86 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhcCC--CCCceeHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFDKN--GDGMITVKELHQALN-LLGLETD----LSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~--~~g~i~~~e~~~~l~-~l~~~~~----~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.+..+-.+|..++.. ++|.|+..||+.+|. .++..++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 346788899999965 589999999999996 5555555 8999999999999999999999999988655
No 64
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.68 E-value=3.9e-08 Score=73.33 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccc
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLG---LETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDL 114 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 114 (207)
...+..+|.+.|.+.+|+|+..|+++++..-. +.-...+.+..|+..|+++||.|+|+||..-+..........
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke--- 176 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE--- 176 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH---
Confidence 46899999999999999999999988875421 122345667778999999999999999998766552221111
Q ss_pred cccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccH---------HHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC
Q 028589 115 TSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISA---------HELQVVLGKLGLTEGNEIARVQQMIGSVDRN 185 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~---------~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d 185 (207)
.-........-..+.-++.|..-+++..|..+. +||..+|-.-. ....--..+..|+.-+|.|
T Consensus 177 -------vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEh-SrgmLrfmVkeivrdlDqd 248 (362)
T KOG4251|consen 177 -------VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEH-SRGMLRFMVKEIVRDLDQD 248 (362)
T ss_pred -------HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHh-hhhhHHHHHHHHHHHhccC
Confidence 000111111112233334444455555555544 88877774431 1223335578899999999
Q ss_pred CCCceeHHHHHHHH
Q 028589 186 HDGRVDFFEFKNMM 199 (207)
Q Consensus 186 ~~g~I~~~eF~~~l 199 (207)
+|..++..+|++..
T Consensus 249 gDkqlSvpeFislp 262 (362)
T KOG4251|consen 249 GDKQLSVPEFISLP 262 (362)
T ss_pred CCeeecchhhhcCC
Confidence 99999999999764
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.60 E-value=5.7e-07 Score=57.69 Aligned_cols=71 Identities=21% Similarity=0.441 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHc-C--CCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVVLGKL-G--LTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~-~--~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
...+..+|+.|. .+.|.|++.||+.++..- + +....++..++.+++.+|.|+||.|+|.||+.++..+.++
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 466788999997 456799999999999754 1 1133467889999999999999999999999999887654
No 66
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.55 E-value=1.6e-07 Score=64.05 Aligned_cols=69 Identities=26% Similarity=0.341 Sum_probs=61.1
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHE 102 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 102 (207)
..+..-+.+-+..+.||++++|.|...|++.+|..+|..+++.++..++.-. .|.+|.|+|+.|+..+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 3455557888999999999999999999999999999999999999999876 56789999999998653
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.53 E-value=2.2e-07 Score=46.67 Aligned_cols=29 Identities=38% Similarity=0.735 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHh
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLL 68 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l 68 (207)
+++++|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788888888888999988888888753
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.53 E-value=1.6e-07 Score=47.16 Aligned_cols=27 Identities=48% Similarity=0.795 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 028589 137 LSEAFKVFDEDGDGFISAHELQVVLGK 163 (207)
Q Consensus 137 l~~~f~~~D~d~~G~i~~~e~~~~l~~ 163 (207)
++.+|+.+|+|++|.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 445555555555555555555555543
No 69
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.50 E-value=2.5e-06 Score=61.86 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=66.4
Q ss_pred cCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 32 RCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
-.+..++..+..+|..+|.+.+|+|+..|+..+|..+|.+-+---++.++...|.|.+|+|+|.+|+-.+...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999988777788999999999999999999999988766
No 70
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.49 E-value=2.3e-06 Score=69.94 Aligned_cols=137 Identities=17% Similarity=0.301 Sum_probs=96.6
Q ss_pred HHHHHHHHH---hcCCCCCceeHHHHHHHH-HHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccc
Q 028589 39 LRLRRVFDM---FDKNGDGMITVKELHQAL-NLLGLE-TDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLND 113 (207)
Q Consensus 39 ~~l~~~F~~---~D~~~~g~i~~~e~~~~l-~~l~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 113 (207)
+++..+|.. .+.++..+++.++|.+.. ..++.+ .....+.-+-...|...||-|+|+||+.+-..+
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l--------- 103 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL--------- 103 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc---------
Confidence 455555544 567888999999996544 444443 455555555566777789999999999986666
Q ss_pred ccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC----CCcHHHHHHHHHhhcCCCCCc
Q 028589 114 LTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTE----GNEIARVQQMIGSVDRNHDGR 189 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~----~~t~~e~~~l~~~~d~d~~g~ 189 (207)
+. +......+|+.||..++|.++.+++.+++....... +.+.+-+. ..+..+..-.
T Consensus 104 ---------------C~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~---~~Fg~~~~r~ 163 (694)
T KOG0751|consen 104 ---------------CA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIK---LHFGDIRKRH 163 (694)
T ss_pred ---------------cC--chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHH---HHhhhHHHHh
Confidence 33 356778899999999999999999999998774222 12222222 2333445566
Q ss_pred eeHHHHHHHHHHHHh
Q 028589 190 VDFFEFKNMMQSVLV 204 (207)
Q Consensus 190 I~~~eF~~~l~~~~~ 204 (207)
++|.+|.+++..+..
T Consensus 164 ~ny~~f~Q~lh~~~~ 178 (694)
T KOG0751|consen 164 LNYAEFTQFLHEFQL 178 (694)
T ss_pred ccHHHHHHHHHHHHH
Confidence 899999999888764
No 71
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.48 E-value=3.4e-06 Score=72.30 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=120.6
Q ss_pred cccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccc
Q 028589 30 RLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFF 109 (207)
Q Consensus 30 ~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 109 (207)
.+.........+..+|...|.+++|.++..+...++..++..+...-+..+++..+..+++.++..+|..+....
T Consensus 127 ~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~----- 201 (746)
T KOG0169|consen 127 SMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL----- 201 (746)
T ss_pred hhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh-----
Confidence 334445556899999999999999999999999999999999999999999999988899999999999987666
Q ss_pred ccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC----
Q 028589 110 PLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN---- 185 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d---- 185 (207)
.. . .++..+|..+-. +.+.++..+|..++...+.....+.+++++|++.+...
T Consensus 202 -------------------~~--r-pev~~~f~~~s~-~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~ 258 (746)
T KOG0169|consen 202 -------------------TK--R-PEVYFLFVQYSH-GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFR 258 (746)
T ss_pred -------------------cc--C-chHHHHHHHHhC-CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhcc
Confidence 22 1 277888888854 49999999999999998655668889999999988543
Q ss_pred CCCceeHHHHHHHHHH
Q 028589 186 HDGRVDFFEFKNMMQS 201 (207)
Q Consensus 186 ~~g~I~~~eF~~~l~~ 201 (207)
..+.++++.|.++|..
T Consensus 259 ~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 259 RHGLLSLDGFTRYLFS 274 (746)
T ss_pred ccceecHHHHHHHhcC
Confidence 3566999999998853
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.44 E-value=1.7e-06 Score=57.38 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred cCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 32 RCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+.++.+...+..+|...|. ++|.|+-.+...++...+ ++.+.+..||...|.+++|.++++||+-.++..
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4567788999999999986 689999999999998887 778999999999999999999999999988776
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.39 E-value=7.9e-07 Score=45.53 Aligned_cols=30 Identities=57% Similarity=0.973 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH-HhC
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALN-LLG 69 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~-~l~ 69 (207)
+++.+|..+|.+++|+|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999998 565
No 74
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.39 E-value=2.3e-06 Score=59.49 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.+.|..+|..||.+++|.|+...|+.+|...|-.++.+++..+|+.+-.+..|.++|..|+..+..-
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 4689999999999999999999999999999999999999999999999999999999999988643
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.37 E-value=4.3e-06 Score=53.64 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNL-----LGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-----l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+..|-.+|..+. .+.+.|+..||+.+|.. +...-....++.+++..|.|+||.|+|+||+.++..+
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778888888 44679999999999953 2334578899999999999999999999999998776
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.34 E-value=8.6e-07 Score=45.40 Aligned_cols=30 Identities=60% Similarity=1.026 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HcC
Q 028589 136 DLSEAFKVFDEDGDGFISAHELQVVLG-KLG 165 (207)
Q Consensus 136 ~l~~~f~~~D~d~~G~i~~~e~~~~l~-~~~ 165 (207)
+++.+|+.+|.|++|+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999998 454
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.34 E-value=3.3e-06 Score=69.05 Aligned_cols=125 Identities=17% Similarity=0.302 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHhCCC------CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccc
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLLGLE------TDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLND 113 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~------~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 113 (207)
....+|+.||+.++|.++.+++..++.+..+. .+.+-+.. .|.......++|.+|.++++.+
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~--------- 176 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEF--------- 176 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHH---------
Confidence 34455556666666666666666555544321 11222222 2222223345666666655554
Q ss_pred ccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHH
Q 028589 114 LTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFF 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~ 193 (207)
..+...++|+..|+.++|+|+.=+|++++-.... +-+|+-.-..+......+..+++|+.
T Consensus 177 -------------------~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~-h~lt~~v~~nlv~vagg~~~H~vSf~ 236 (694)
T KOG0751|consen 177 -------------------QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRI-HLLTPFVEENLVSVAGGNDSHQVSFS 236 (694)
T ss_pred -------------------HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhh-hcCCHHHhhhhhhhcCCCCccccchH
Confidence 3455788999999999999999999999987742 22444433444455555556667766
Q ss_pred HHH
Q 028589 194 EFK 196 (207)
Q Consensus 194 eF~ 196 (207)
.|.
T Consensus 237 yf~ 239 (694)
T KOG0751|consen 237 YFN 239 (694)
T ss_pred HHH
Confidence 654
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.32 E-value=6.8e-06 Score=54.49 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 130 LSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 130 ~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
..........+|...|. ++|.|+-++.+.++...+ ++.+.+..|+...|.+++|+++.+||+-+|+-..
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG----LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 34556788899999985 689999999999999888 5668899999999999999999999999887553
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.25 E-value=4.7e-06 Score=67.34 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL----GLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..++.+|..+|.|++|.|+.+||+++...+ ...++.+++-.+...+|.++||.|++.||+..+...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 467889999999999999999999999866 456899999999999999999999999999987665
No 80
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.18 E-value=2.3e-06 Score=66.43 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=92.0
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhccc
Q 028589 52 GDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLS 131 (207)
Q Consensus 52 ~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (207)
+.+.|-..||..-++. ...+.+..+|..||.+++|.++|.+.+..+..+ +...
T Consensus 240 kg~~igi~efa~~l~v----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavl-----------------------c~p~ 292 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRV----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVL-----------------------CGPP 292 (412)
T ss_pred cCCCcceeEeeeeeec----chhhhhhhhhheecCCCCCcccHHHHhhhheee-----------------------eCCC
Confidence 3444444444433321 233677888999999999999999999988777 3555
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 132 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 132 ~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
.....++.+|+.|+.+-+|.+...+|..+|+.. .....-.+..+|...+...+|+|+|.+|.++..
T Consensus 293 ~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~---lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 293 VTPVIIQYAFKRFSVAEDGISGEHILSLILQVV---LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred CcHHHHHHHHHhcccccccccchHHHHHHHHHh---cCcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 667889999999999999999999999999876 222333467899999999999999999998764
No 81
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.18 E-value=2.5e-05 Score=65.55 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=114.5
Q ss_pred hccCCCCCccccccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHh-CCCCCHH---HHHHHHHhhCCCC--CCcc
Q 028589 19 WSRRPSSSSSFRLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLL-GLETDLS---ELESTIASHVKPG--NDGL 92 (207)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~---~~~~l~~~~d~~~--~g~i 92 (207)
-.+..|-+.+..+...+..++.|.++|...|.|++|.++-.|+...-... +.++... ++...++..-+++ ++.+
T Consensus 175 ihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~l 254 (625)
T KOG1707|consen 175 IHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGL 254 (625)
T ss_pred eccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccc
Confidence 34555666677888889999999999999999999999999998876553 5556544 4444444444443 4567
Q ss_pred cHHHHHHHHhhhhcccccc----cccccc-------------cccc-chhhhhhcccHHHHHHHHHHHhhcCCCCCcccH
Q 028589 93 EFEDFVSLHESLDETFFPL----NDLTST-------------ATTD-ADEGNKKVLSQEEADLSEAFKVFDEDGDGFISA 154 (207)
Q Consensus 93 ~~~eF~~~~~~~~~~~~~~----~~~~~~-------------~~~~-~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~ 154 (207)
+..-|+.+...+.+.-... ..+... .... .....-+....-.+.+..+|..||.|++|-++-
T Consensus 255 tl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p 334 (625)
T KOG1707|consen 255 TLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSP 334 (625)
T ss_pred cccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCH
Confidence 8888888766552221100 000000 0000 111222334455678999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 155 HELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 155 ~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
.||..++..++..+-...-+.+ .--.+..|.++|..|+..+.-
T Consensus 335 ~El~~LF~~~P~~pW~~~~~~~----~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 335 EELKDLFSTAPGSPWTSSPYKD----STVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHhhhCCCCCCCCCcccc----cceecccceeehhhHHHHHHH
Confidence 9999999999633311000000 001236899999999887653
No 82
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.17 E-value=5.7e-06 Score=75.31 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHH-----HHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 131 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIA-----RVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 131 ~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~-----e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
.....++..+|..||.+++|.+++.+|+.+|+.+|+..++-++ +++.++..+|++.+|+|+.++|+.+|..
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 3445678899999999999999999999999999988877666 8999999999999999999999999865
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.17 E-value=9.7e-06 Score=45.80 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=41.4
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 55 MITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 55 ~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.++.+|+..+|+.+++.+++..+..+|+.+|.+++|++.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999987654
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.11 E-value=1e-05 Score=65.98 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=52.3
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
........++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+...+.
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 3345567789999999999999999999831 578999999999999999999999987653
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.11 E-value=4.5e-06 Score=40.37 Aligned_cols=25 Identities=52% Similarity=0.817 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q 028589 137 LSEAFKVFDEDGDGFISAHELQVVL 161 (207)
Q Consensus 137 l~~~f~~~D~d~~G~i~~~e~~~~l 161 (207)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3557777888888888888877653
No 86
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.02 E-value=3.4e-05 Score=57.88 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=95.6
Q ss_pred HHHHhcCC-CCCceeHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccccccc
Q 028589 44 VFDMFDKN-GDGMITVKELHQALNL-LGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTD 121 (207)
Q Consensus 44 ~F~~~D~~-~~g~i~~~e~~~~l~~-l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~ 121 (207)
.+...|.- .+-.++..||..+|.- -....-...+..|+..+|.++|..++..+|++........
T Consensus 203 RwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVen-------------- 268 (362)
T KOG4251|consen 203 RWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVEN-------------- 268 (362)
T ss_pred hhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhh--------------
Confidence 33344432 2445666888777642 1222345678889999999999999999999987655111
Q ss_pred chhhhhhcccHH-HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 028589 122 ADEGNKKVLSQE-EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNM 198 (207)
Q Consensus 122 ~~~~~~~~~~~~-~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~ 198 (207)
+..+...... ....+..=..+|.+.+|.++.+|+..++.... ......++..++...|.+++.+++.++++..
T Consensus 269 --qqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n--~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 269 --QQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQN--FRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred --hhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchh--hhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 1122222222 34445555677999999999999999976665 4466778999999999999999999998764
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00023 Score=61.46 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcC--CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccc--
Q 028589 39 LRLRRVFDMFDK--NGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDL-- 114 (207)
Q Consensus 39 ~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~-- 114 (207)
++..+.+..|+. -+.|+|+-..-+.++-..| +....+..||...|.|.||+++..||.-.|......+.+..-.
T Consensus 13 ~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~ 90 (1118)
T KOG1029|consen 13 EERQKHDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPV 90 (1118)
T ss_pred HHHHHHHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCC
Confidence 344444555553 4678999988888887777 5567888888888999999999999987765443332210000
Q ss_pred ----------------cc---c----------------------------------cccc------------------c-
Q 028589 115 ----------------TS---T----------------------------------ATTD------------------A- 122 (207)
Q Consensus 115 ----------------~~---~----------------------------------~~~~------------------~- 122 (207)
.. + ..+. .
T Consensus 91 LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss 170 (1118)
T KOG1029|consen 91 LPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSS 170 (1118)
T ss_pred CChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 00 0 0000 0
Q ss_pred -----------hhh-hhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCce
Q 028589 123 -----------DEG-NKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRV 190 (207)
Q Consensus 123 -----------~~~-~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I 190 (207)
.+. .=.......-+.+++|..+|+..+|.|+-..-+.+|...++ .-..+..|+...|.|+||++
T Consensus 171 ~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L----pq~~LA~IW~LsDvd~DGkL 246 (1118)
T KOG1029|consen 171 VSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL----PQNQLAHIWTLSDVDGDGKL 246 (1118)
T ss_pred hhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC----chhhHhhheeeeccCCCCcc
Confidence 000 00112233456889999999999999999999999988873 33568999999999999999
Q ss_pred eHHHHHHHHHHH
Q 028589 191 DFFEFKNMMQSV 202 (207)
Q Consensus 191 ~~~eF~~~l~~~ 202 (207)
+-+||+-.|.-.
T Consensus 247 ~~dEfilam~li 258 (1118)
T KOG1029|consen 247 SADEFILAMHLI 258 (1118)
T ss_pred cHHHHHHHHHHH
Confidence 999999887654
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.99 E-value=1.4e-05 Score=38.58 Aligned_cols=25 Identities=36% Similarity=0.794 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHH
Q 028589 41 LRRVFDMFDKNGDGMITVKELHQAL 65 (207)
Q Consensus 41 l~~~F~~~D~~~~g~i~~~e~~~~l 65 (207)
|+.+|..+|.|++|.|+..||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888887753
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.98 E-value=4.2e-05 Score=43.24 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=41.6
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 151 FISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 151 ~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
.++..|++.+|+.+. ..++++.+..+|+..|.+++|.+.-+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~N--I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN--IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 378899999999998 77899999999999999999999999999999865
No 90
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.92 E-value=0.0001 Score=50.94 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccccc
Q 028589 41 LRRVFDMFDKNGDGMITVKELHQALNLLGL-ETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTAT 119 (207)
Q Consensus 41 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
-+++...|..||.|-++..+|..++..+.. .+-.-.+.--|+.+|-++|+.|.-++....+..+-..
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~------------ 140 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD------------ 140 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc------------
Confidence 356778899999999999999999987643 2333345556788999999999999999988776000
Q ss_pred ccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 120 TDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
+-........+..+....|.||+|.|+..+|..++...
T Consensus 141 -------eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 141 -------ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred -------cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 00112233445667777899999999999999988654
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.92 E-value=0.00013 Score=59.57 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=50.1
Q ss_pred HHHHHH---HHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh----cCCCCCceeHHHHHHHHHHHHhhc
Q 028589 135 ADLSEA---FKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV----DRNHDGRVDFFEFKNMMQSVLVRS 206 (207)
Q Consensus 135 ~~l~~~---f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~----d~d~~g~I~~~eF~~~l~~~~~~~ 206 (207)
+....+ |-.+|+|++|.|+.++|....... ++.--++.||... -.-.+|+++|++|+-++...-.|+
T Consensus 275 e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t-----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 275 EHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT-----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred HHHHHHHHHHhhhccccccccCHHHHHHHhccc-----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 334455 667799999999999998886444 4556678888833 334689999999999988776654
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.88 E-value=2.6e-05 Score=52.60 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHH
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKN 197 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~ 197 (207)
........+...|..+|.+++|.|+..|+..+...+. ..+.-+..++...|.|+||.||+.|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~----~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM----PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS----TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh----hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445667889999999999999999999998876442 2233478899999999999999999975
No 93
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.85 E-value=4.7e-05 Score=62.21 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
...+..+|+.+|.+++|.|+..||.. +..+|..+|.|++|.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35778899999999999999999942 5788999999999999999999988765
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.80 E-value=8.8e-05 Score=47.18 Aligned_cols=65 Identities=14% Similarity=0.319 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC----CCCceeHHHHHHHHHH
Q 028589 136 DLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN----HDGRVDFFEFKNMMQS 201 (207)
Q Consensus 136 ~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d----~~g~I~~~eF~~~l~~ 201 (207)
++..+|..+.. +.+.|+.++|.++|.........+.+.+..++..+..+ ..+.+++++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46789999955 89999999999999888644467999999999998654 4799999999999864
No 95
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00013 Score=48.27 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=47.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHc------CC-CCC-CcHHHHHHHHHhh----cCCCCCceeHHHHHHHH
Q 028589 139 EAFKVFDEDGDGFISAHELQVVLGKL------GL-TEG-NEIARVQQMIGSV----DRNHDGRVDFFEFKNMM 199 (207)
Q Consensus 139 ~~f~~~D~d~~G~i~~~e~~~~l~~~------~~-~~~-~t~~e~~~l~~~~----d~d~~g~I~~~eF~~~l 199 (207)
-.|.+.|.|++|+|+--|+..++..+ |. +.+ .++.|++.++... |.|+||.|+|.||+...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 45889999999999999999998865 22 223 4667777777654 78899999999998753
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.66 E-value=0.00023 Score=58.94 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=64.2
Q ss_pred ccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 31 LRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLE---TDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 31 ~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~---~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
...++++...+...|...| +++|+|+..++..++...+.. ...++++.++...+.+.+|.|+|++|+..+...
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3567788899999999999 999999999999999887654 368899999999999999999999999966554
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.62 E-value=0.0003 Score=58.29 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC-CCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTE-GNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~-~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
........++..|...| +++|+|+..++..++...+... .+..++++.++...+.|.+|+|+|++|+..+..+..+
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 33455677889999999 9999999999999999987433 2467889999999999999999999999988776554
No 98
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.59 E-value=3.9e-05 Score=51.80 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVS 99 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 99 (207)
........+.=.|..+|.+++|.|+..|+..+...+ ...+.-+..++..+|.|+|+.|++.||..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344555678888999999999999999998877655 35666789999999999999999999975
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.35 E-value=0.0037 Score=44.83 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH--Hhhhhccccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSL--HESLDETFFPLNDLTS 116 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~--~~~~~~~~~~~~~~~~ 116 (207)
-.|++....||+|++|.|..-|-...++.+|.++--+.+..++-..... ..+...+... +......+.+..+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lS---y~T~~~w~p~P~f~Iyi~nIhk~kH--- 80 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALS---YPTQPSWIPDPFFRIYIKNIHKGKH--- 80 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccC---CccCCCCCCCCceeEEeeccccccc---
Confidence 3567778889999999999999999999999887666655554332211 1111110000 0000000000000
Q ss_pred cccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC-----CCCcHHHHHHHHHhhcCCCCCcee
Q 028589 117 TATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLT-----EGNEIARVQQMIGSVDRNHDGRVD 191 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~-----~~~t~~e~~~l~~~~d~d~~g~I~ 191 (207)
.++....+ .......++++.+|..++..+.+.|+..|+..+++..... -....-|...++..+ .+++|.+.
T Consensus 81 GSDSg~YD---~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~ 156 (174)
T PF05042_consen 81 GSDSGAYD---TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLS 156 (174)
T ss_pred CCCccccc---cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEe
Confidence 00111111 1234456888999999999999999999999999975311 122344556666655 67899998
Q ss_pred HHHHHHHH
Q 028589 192 FFEFKNMM 199 (207)
Q Consensus 192 ~~eF~~~l 199 (207)
.++-...+
T Consensus 157 Ke~iR~vY 164 (174)
T PF05042_consen 157 KEDIRGVY 164 (174)
T ss_pred HHHHhhhc
Confidence 88765544
No 100
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.00097 Score=59.91 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=125.2
Q ss_pred cccccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 028589 28 SFRLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDET 107 (207)
Q Consensus 28 ~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 107 (207)
......+..+..++..+|..+.+. +|.++-...+-+|..-. +....+.++|.-.|.+.+|.+++.||...++.....
T Consensus 118 ~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~ 194 (847)
T KOG0998|consen 118 PFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDL 194 (847)
T ss_pred ccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhccccccccccccCCCChhhhhhhhhHHHHH
Confidence 444566777778899999988776 88888888877776554 667888899999999999999999999987765444
Q ss_pred cccccccccccccc-------------------------------------------------------------chhhh
Q 028589 108 FFPLNDLTSTATTD-------------------------------------------------------------ADEGN 126 (207)
Q Consensus 108 ~~~~~~~~~~~~~~-------------------------------------------------------------~~~~~ 126 (207)
+............. +....
T Consensus 195 l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~ 274 (847)
T KOG0998|consen 195 LNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWS 274 (847)
T ss_pred hhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccC
Confidence 44110000000000 00000
Q ss_pred hhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 127 KKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 127 ~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
-.........+..+|...|.+.+|.|+-.+...++...| +....+..++...|..++|.|++++|.-.+.....+
T Consensus 275 ~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g----l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 275 PKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG----LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred cccChHHHHHHHHHHHhccccCCCcccccccccccccCC----CChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 033445566777899999999999999999999998877 455779999999999999999999998877665443
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.10 E-value=0.00091 Score=32.37 Aligned_cols=27 Identities=41% Similarity=0.803 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHH
Q 028589 41 LRRVFDMFDKNGDGMITVKELHQALNL 67 (207)
Q Consensus 41 l~~~F~~~D~~~~g~i~~~e~~~~l~~ 67 (207)
+..+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 466777788888888888888777654
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.00 E-value=0.001 Score=32.19 Aligned_cols=25 Identities=32% Similarity=0.756 Sum_probs=12.0
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 176 QQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 176 ~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
..+|..+|.+.+|.|++.+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3444444444445555555544443
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.90 E-value=0.0026 Score=49.92 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL-GLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTST 117 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~ 117 (207)
..+...|..||.+++|.++..|--..+..+ +...+...++--|++|+...||.+.-.+|.-.+...
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~------------- 325 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV------------- 325 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-------------
Confidence 578899999999999999998887777766 456788889999999999999988887766655433
Q ss_pred ccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q 028589 118 ATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLG 165 (207)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~ 165 (207)
..-..-.+..+|...+...+|+|+.++|+.+....+
T Consensus 326 ------------lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 326 ------------LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ------------cCcceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 111223456789999999999999999999987664
No 104
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.81 E-value=0.015 Score=51.76 Aligned_cols=104 Identities=18% Similarity=0.108 Sum_probs=85.2
Q ss_pred cCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 028589 32 RCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDL-----SELESTIASHVKPGNDGLEFEDFVSLHESLDE 106 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~-----~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 106 (207)
..++.+..+++..|..+++...|.++.++|..+|-.+|.+.-. .++..++...|+...|.++|.+|...+..-
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~-- 817 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE-- 817 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh--
Confidence 4456777899999999999999999999999999999987763 466677777788777999999999998765
Q ss_pred cccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHH
Q 028589 107 TFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQV 159 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~ 159 (207)
-...+....+..+|+.+-+++. .|..+||..
T Consensus 818 ---------------------~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 ---------------------YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred ---------------------hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 2445566778888998877776 788888776
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.75 E-value=0.0053 Score=38.88 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhhh
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLLGL--ETDLSELESTIASHVKP----GNDGLEFEDFVSLHESL 104 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~~~~~ 104 (207)
+|..+|..+.. +.+.|+.++|...|+.-.. ..+.+.+..++..+..+ ..+.+++..|..++..-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 47889999966 7899999999999987643 46899999999998655 36899999999998665
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.52 E-value=0.023 Score=49.08 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=64.8
Q ss_pred CCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC
Q 028589 88 GNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLT 167 (207)
Q Consensus 88 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~ 167 (207)
+.|.++|++|..+...+.. .......++..+|..+-. +.+.|+.++|..+|....-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~----------------------~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKI----------------------TEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhcc----------------------ccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCC
Confidence 3579999999888766611 111245789999999954 45799999999999998533
Q ss_pred CCCcHHHHHHHHHhhc-------CCCCCceeHHHHHHHHHH
Q 028589 168 EGNEIARVQQMIGSVD-------RNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 168 ~~~t~~e~~~l~~~~d-------~d~~g~I~~~eF~~~l~~ 201 (207)
...+.+.+..|+..+- ....+.+++++|..+|..
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 70 LDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 3467777777766441 112356999999999863
No 107
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.014 Score=38.89 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHh------CC---C-CCHHHHHH----HHHhhCCCCCCcccHHHHHHH
Q 028589 43 RVFDMFDKNGDGMITVKELHQALNLL------GL---E-TDLSELES----TIASHVKPGNDGLEFEDFVSL 100 (207)
Q Consensus 43 ~~F~~~D~~~~g~i~~~e~~~~l~~l------~~---~-~~~~~~~~----l~~~~d~~~~g~i~~~eF~~~ 100 (207)
..|..+|.|++|.|+--|+..++... |. + .++.++.+ +++.-|.++||.|+|-||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34788899999999999999999754 22 1 34555544 456668889999999999863
No 108
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.06 E-value=0.067 Score=38.19 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=50.5
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHHcCC-CCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 138 SEAFKVF---DEDGDGFISAHELQVVLGKLGL-TEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 138 ~~~f~~~---D~d~~G~i~~~e~~~~l~~~~~-~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
+.+|..| -......|+-..|..+|+..++ .-.++...++.+|..+-......|+|++|+.+|..+-.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 3444444 5567779999999999999974 34589999999999986666677999999999987654
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.025 Score=47.07 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=63.7
Q ss_pred ccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 31 LRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 31 ~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
-+-+.+|++.+-.-|+-...|.+|+|+-..-+.++.... +.-.++..||...|.+.||-+++.|||..++..
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 455788999999999999999999999988888887665 556899999999999999999999999998766
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.01 E-value=0.054 Score=38.65 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=50.0
Q ss_pred HHHHHHHhc---CCCCCceeHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 41 LRRVFDMFD---KNGDGMITVKELHQALNLLGL---ETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 41 l~~~F~~~D---~~~~g~i~~~e~~~~l~~l~~---~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
|+.+|..|- ..+...|+...|..+++..++ .++..+++-+|..+-..+..+|+|++|+..|..+
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 355666664 556779999999999998754 5899999999999876666789999999998776
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.95 E-value=0.091 Score=46.05 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCc
Q 028589 72 TDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGF 151 (207)
Q Consensus 72 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~ 151 (207)
....|+..++...|.+.+|.+++.+-+.++..+ +..-....++.+|+..|..++|.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~------------------------n~~l~~~~~~~~f~e~~~~~~~k 188 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL------------------------NVQLSESKARRLFKESDNSQTGK 188 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHH------------------------HHhhhHHHHHHHHHHHHhhccce
Confidence 356799999999999999999999999998888 44455677888888889999999
Q ss_pred ccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 152 ISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 152 i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
+...++..+....+.. + ++..+|..+-.+ .+.++..++..++...
T Consensus 189 ~~~~~~~~~~~~~~~r----p-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 189 LEEEEFVKFRKELTKR----P-EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred ehHHHHHHHHHhhccC----c-hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 9999999999888632 2 678888877554 7778888877777643
No 112
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.022 Score=47.41 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 131 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 131 ~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
....+.....|+-+-.|-+|+|+-..-+.++.+.. +.-+|+..|+...|.|.||-+++.||+.+|.-.+
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk----lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK----LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc----CchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 34456667778999999999999999999998876 3448899999999999999999999999987544
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.048 Score=47.80 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 028589 35 SLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDE 106 (207)
Q Consensus 35 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 106 (207)
+.+..++.++|..+|+..+|+|+-..-+.+|-..+ +....+..||..-|.|+||.++-+||+-.++.+.-
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHHHH
Confidence 34556889999999999999999999999998877 66788999999999999999999999988766543
No 114
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.51 E-value=0.28 Score=43.97 Aligned_cols=123 Identities=19% Similarity=0.302 Sum_probs=83.1
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC-------CcccHHHHHHHHhhhhcccccccccccccccc
Q 028589 49 DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGN-------DGLEFEDFVSLHESLDETFFPLNDLTSTATTD 121 (207)
Q Consensus 49 D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~-------g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~ 121 (207)
..+..|.|..+.+..++..- -.+..++.-+..+....+ .-.+++.|..++..+
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl----------------- 217 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL----------------- 217 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc-----------------
Confidence 34567777776666655431 112333333333322211 135666677776666
Q ss_pred chhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC--------CCCcHHHHHHHHHhhcCCC----CCc
Q 028589 122 ADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLT--------EGNEIARVQQMIGSVDRNH----DGR 189 (207)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~--------~~~t~~e~~~l~~~~d~d~----~g~ 189 (207)
+ ...++..+|..+..++.-+++.++|.+++.....+ +......+..|+..|.++. .|+
T Consensus 218 -------c---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gq 287 (1189)
T KOG1265|consen 218 -------C---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQ 287 (1189)
T ss_pred -------C---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccc
Confidence 2 23677889999998888999999999999975322 3467788999999997764 889
Q ss_pred eeHHHHHHHHHH
Q 028589 190 VDFFEFKNMMQS 201 (207)
Q Consensus 190 I~~~eF~~~l~~ 201 (207)
++-+.|+.++..
T Consensus 288 ms~dgf~ryl~g 299 (1189)
T KOG1265|consen 288 MSTDGFVRYLMG 299 (1189)
T ss_pred cchhhhHHHhhC
Confidence 999999998864
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.91 E-value=0.041 Score=43.72 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 130 LSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 130 ~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
...-...+-.+|..+|.+.+|.|+..||+.+- ....+.-+..+|...|...||.|+-.|++..+..
T Consensus 245 ~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~------ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 245 LPICKDSLGWMFNKLDTNYDLLLDQSELRAIE------LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred CcchhhhhhhhhhccccccccccCHHHhhhhh------ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 33456788999999999999999999998875 3334456899999999999999999999987653
No 116
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.89 E-value=0.071 Score=42.46 Aligned_cols=99 Identities=20% Similarity=0.145 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLG---LETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLT 115 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 115 (207)
.+|...|..+-.+.++......+..+-..+. .++-..++--+|..+|.+.|+.++..|...+-...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk----------- 279 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK----------- 279 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----------
Confidence 4778889888888777776666666544442 24668899999999999999999999988764333
Q ss_pred ccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q 028589 116 STATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLG 165 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~ 165 (207)
...-++-.|...|..++|.|+..|+-..+...+
T Consensus 280 -----------------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 280 -----------------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred -----------------chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 456788899999999999999999877776665
No 117
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.75 E-value=0.078 Score=45.06 Aligned_cols=75 Identities=15% Similarity=0.246 Sum_probs=68.8
Q ss_pred cccCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 30 RLRCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 30 ~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.-..++++.......|..+|.|+.|++...++..+|...+...+.+....++...+.+-+|.+...+|..++...
T Consensus 584 ~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 584 PIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred ccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 345678888899999999999999999999999999999988999999999999999889999999999998776
No 118
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.47 E-value=0.07 Score=49.78 Aligned_cols=59 Identities=17% Similarity=0.429 Sum_probs=51.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 139 EAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 139 ~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
.-|+.+|+||.|.|+..+|...+.... .-|..+++-++.....|.+..++|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k---~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK---HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc---cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 348889999999999999999997764 35778899999999999999999999998765
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=0.14 Score=46.57 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccc
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTA 118 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~ 118 (207)
..+..+|+.+|..++|.|+-.+-..++...| +....+..+|...|..+.|.++..+|..-+........+..-.....
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 5788999999999999999999888888776 67788899999999999999999999998776655544321111110
Q ss_pred --ccc----------------------chhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHH
Q 028589 119 --TTD----------------------ADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIAR 174 (207)
Q Consensus 119 --~~~----------------------~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e 174 (207)
... .....-........+...+|+.+... +|.++-...+-++..-+ +...-
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~----Lp~~~ 163 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK----LPSDV 163 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC----CChhh
Confidence 000 00000012233335556668888654 89999999998886665 44566
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 175 VQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 175 ~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
+..++...|.+.+|.++..+|.-.++....
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred hccccccccccccCCCChhhhhhhhhHHHH
Confidence 788899999999999999999988876543
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.18 E-value=0.088 Score=49.18 Aligned_cols=59 Identities=27% Similarity=0.473 Sum_probs=50.4
Q ss_pred HHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 45 FDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 45 F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
|+.+|+|+.|.|+.++|..+|..- ...+..+++.++.-...+.+..++|++|+.-++..
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 566799999999999999999753 34678999999999999999999999999876543
No 121
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.04 E-value=0.38 Score=41.62 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=61.2
Q ss_pred eeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHH
Q 028589 56 ITVKELHQALNLLGL-ETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEE 134 (207)
Q Consensus 56 i~~~e~~~~l~~l~~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (207)
|+.+.|..+.+.+-. ..+..-+.++|+..|.+.+|.++|.+|+..+..+ ......
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l------------------------~~~~~~ 590 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL------------------------KAGDAL 590 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH------------------------HhhhHH
Confidence 444455555544422 2455677889999999999999999999999888 667778
Q ss_pred HHHHHHHHhhcCCCCCcccHHHH
Q 028589 135 ADLSEAFKVFDEDGDGFISAHEL 157 (207)
Q Consensus 135 ~~l~~~f~~~D~d~~G~i~~~e~ 157 (207)
+.+..+|+.+|.+++ .+.+++.
T Consensus 591 ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 591 EKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhhccCCcc-ccccccc
Confidence 899999999999999 9999988
No 122
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.49 E-value=1 Score=28.93 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHc-------CCCCC--CcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVVLGKL-------GLTEG--NEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~-------~~~~~--~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
.++++.+|+.+ .|.+|.|+...|..+|... |.... -.+.-++..|... .....|+..+|+..+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 37889999999 7999999999999998854 21111 1455566777665 35667999999998864
No 123
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.25 E-value=0.079 Score=32.24 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC-------CCCceeHHHHHHH
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN-------HDGRVDFFEFKNM 198 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d-------~~g~I~~~eF~~~ 198 (207)
.+.+..+|+.+ .++.++||.++|+..|..-. ++-++..+..- ..|.++|..|++.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~---------aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ---------AEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC---------HHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCcHH---------HHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 37889999999 78889999999999873221 34444444322 2367999998754
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.24 E-value=0.28 Score=41.88 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
.....+.-|..+|.|+.|.++..++..+|+..+ .+.+++.+.++....|.+.+|.+...||.+++....
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 344556779999999999999999999999997 678889999999999999999999999999887653
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.88 E-value=0.075 Score=42.02 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHH---HHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVV---LGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~---l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
...++..|.++|+++++.|.+.|++-+ +..-.+ ...-...+++..|.|+|-.|+++|+...|....
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~----~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK----PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhcc----HHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 345778899999999999999997544 443331 223457889999999999999999999886543
No 126
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.93 E-value=1 Score=32.51 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC------------------------------------------------
Q 028589 135 ADLSEAFKVFDEDGDGFISAHELQVVLGKLGL------------------------------------------------ 166 (207)
Q Consensus 135 ~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~------------------------------------------------ 166 (207)
..|++-..-||.|++|.|..-|--+-++.+|.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 44566667799999999999988777776532
Q ss_pred ---CCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 167 ---TEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 167 ---~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
.-.+.+..+++||..++....+.+++.|...+++.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 01246677999999999888899999999998876
No 127
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.76 E-value=0.33 Score=41.60 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=51.8
Q ss_pred cCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH-hhCCCCCCcccHHHHHHHHhhh
Q 028589 32 RCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIA-SHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~-~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..++.-...+..+|..||.|++|-++..|+..+.......+. ....+. ..-.+..|.++|+-|+..|...
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW---~~~~~~~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPW---TSSPYKDSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCC---CCCcccccceecccceeehhhHHHHHHHH
Confidence 456777789999999999999999999999999988754431 100000 0011256899999999999877
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.19 E-value=0.94 Score=39.35 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcC-CCCCceeHHHHHHHHHH
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDR-NHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~-d~~g~I~~~eF~~~l~~ 201 (207)
...++..+|..+.. ++.|+.++|..+|....-....+.+.+..||..+.. -..+.++++.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 34688999999853 579999999999998853334577888999988642 24677999999999864
No 129
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.12 E-value=0.17 Score=40.14 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLLG-LETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.++=-|..+|.++++.|.+.|+.-+=+.+- ..-...-..++++.+|.|+|..|++.||...+...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 445568889999999999998755443331 22345677889999999999999999999988765
No 130
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=90.65 E-value=0.27 Score=32.90 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 170 NEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 170 ~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
+|++.++.++..+-.|..|+|.|.||+..+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 68899999999999999999999999988763
No 131
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.37 E-value=3.3 Score=26.60 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL-------GL----ETDLSELESTIASHVKPGNDGLEFEDFVSLHES 103 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-------~~----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 103 (207)
++++.+|..+ .|++|.++...|...|+.+ |. ...+..++..|.... ....|+.++|+.++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5788899988 7889999999998888643 21 236778888887762 3567999999998754
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=89.79 E-value=1.8 Score=37.61 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC----CCCceeHHHHHHHHHH
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN----HDGRVDFFEFKNMMQS 201 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d----~~g~I~~~eF~~~l~~ 201 (207)
...++..+|..+.. ++.|+.++|..+|....-....+.+.+..++..+... ..|.+++++|..+|..
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 45888999999864 3689999999999988533335667788999988543 3467999999999864
No 133
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.43 E-value=1.5 Score=39.67 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcH---HHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEI---ARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~---~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
+......+++..|..+|....|.++.++|...+..+|+...-.+ .++..|+...|.+.-|+++|.+|...|..-+
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 33456788999999999999999999999999999994332212 2233444555666679999999999887654
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=89.30 E-value=3.6 Score=36.02 Aligned_cols=52 Identities=6% Similarity=0.062 Sum_probs=42.6
Q ss_pred CCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 52 GDGMITVKELHQALNLLGL--ETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 52 ~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+.|.++.++|..+.+.+-. .....++..||..+.. +.+.++.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHh
Confidence 4689999999888887642 2367899999999954 44689999999999877
No 135
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.77 E-value=2.3 Score=37.14 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC-CCcHHHHHHHHHhhc-------CCCCCceeHHHHHHHHHH
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTE-GNEIARVQQMIGSVD-------RNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~-~~t~~e~~~l~~~~d-------~d~~g~I~~~eF~~~l~~ 201 (207)
...++..+|..+.. +++.|+.++|..+|....-.+ ..+.+++..++..+- .-..+.++++.|..+|..
T Consensus 27 p~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45789999999954 448999999999999885222 346677777776441 123456999999998864
No 136
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.22 E-value=0.56 Score=37.00 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcC---CCCCCcHHH-----------HHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 138 SEAFKVFDEDGDGFISAHELQVVLGKLG---LTEGNEIAR-----------VQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 138 ~~~f~~~D~d~~G~i~~~e~~~~l~~~~---~~~~~t~~e-----------~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
...|..+|.+++|+++-.++..++..-- +.+.-.+.+ .+.+++..|.|.|..|+++||++.-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3568888999999999999988876430 111111111 24577888999999999999998643
No 137
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.60 E-value=0.66 Score=28.22 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHH
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPG-------NDGLEFEDFVSL 100 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~-------~g~i~~~eF~~~ 100 (207)
+.+.+.|+.+ .++.++||..||+..|.. +.++-+...+.... -|.++|..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 5788999999 778899999999998652 33344554443322 256888888754
No 138
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.34 E-value=0.62 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 72 TDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 72 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
++++.++.+|..+-.|..|+|.|.+|+.-+..-
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 678999999999999999999999999987644
No 139
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.08 E-value=2.4 Score=33.57 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHH-h---CCC-CCHH-----------HHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028589 42 RRVFDMFDKNGDGMITVKELHQALNL-L---GLE-TDLS-----------ELESTIASHVKPGNDGLEFEDFVSLHE 102 (207)
Q Consensus 42 ~~~F~~~D~~~~g~i~~~e~~~~l~~-l---~~~-~~~~-----------~~~~l~~~~d~~~~g~i~~~eF~~~~~ 102 (207)
..+|..+|.+++|+++-.|+-.++.. + ..+ -.++ .-..+++..|.+.|.-|+.+||++--.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 44677788888888888888776642 1 111 1111 123456777888888888888887543
No 140
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=85.79 E-value=1.3 Score=38.47 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 028589 36 LNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDF 97 (207)
Q Consensus 36 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF 97 (207)
...-.++++|+.+|.+++|.|+..+|...|..+...-..+-+.-+++.++++++ ...-++.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 444678999999999999999999999999988777777888899999999988 6666665
No 141
>PLN02223 phosphoinositide phospholipase C
Probab=83.45 E-value=5.1 Score=34.52 Aligned_cols=68 Identities=9% Similarity=0.045 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHcCCCCCCcHHHHHHHHHhhcCC--------CCCceeHHHHHHHHHH
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVL---GKLGLTEGNEIARVQQMIGSVDRN--------HDGRVDFFEFKNMMQS 201 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l---~~~~~~~~~t~~e~~~l~~~~d~d--------~~g~I~~~eF~~~l~~ 201 (207)
..+.++.+|..+ .+++|.++.+.+.+++ ....-....+.++.+.|+..+-.. ..+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 457889999999 4888999999999999 544322346777777777755221 2366999999999864
No 142
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=83.26 E-value=6.5 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=12.1
Q ss_pred HhhcCCCCCcccHHHHHHHHHHcC
Q 028589 142 KVFDEDGDGFISAHELQVVLGKLG 165 (207)
Q Consensus 142 ~~~D~d~~G~i~~~e~~~~l~~~~ 165 (207)
..+|..++|+|+.=||--+.+-++
T Consensus 49 ~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 49 STIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp HHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred HHHhcccCCccchhhhHHHHHHHh
Confidence 344555666666655555555543
No 143
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.11 E-value=0.82 Score=37.03 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCc-HHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 028589 131 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNE-IARVQQMIGSVDRNHDGRVDFFEFKNMM 199 (207)
Q Consensus 131 ~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t-~~e~~~l~~~~d~d~~g~I~~~eF~~~l 199 (207)
.+..+.++++|+.+|..++|+|+-+-++.++.... ...+ .+.+..+=..+|+..-|.|-..+|...+
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--ccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 34468899999999999999999999999999885 2233 3334444456677777777766665443
No 144
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=80.84 E-value=10 Score=22.99 Aligned_cols=51 Identities=8% Similarity=0.144 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 152 ISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 152 i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
++-+++..+++..| ..+|..++..+++.-+..+--.++-+.+.++|..+..
T Consensus 14 l~d~~m~~if~l~~--~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GLi~ 64 (68)
T PF07308_consen 14 LKDDDMIEIFALAG--FEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGLII 64 (68)
T ss_pred CChHHHHHHHHHcC--CccCHHHHHHHHCCCCCccccccChHHHHHHHHHHHH
Confidence 34568888888888 7789999999998866555555777777777776654
No 145
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.62 E-value=16 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
.-.+..+...||.+++|.|+.-.|+..+..+
T Consensus 96 ~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 96 DLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 3456778899999999999999998887543
No 146
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=80.56 E-value=7.6 Score=23.52 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=37.4
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 57 TVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 57 ~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+..++..++...+..++.+++..+++.-+..+-..++-+.+..++..+
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 446788889999999999999999988776666666766666666554
No 147
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.74 E-value=3.5 Score=28.80 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC-------CCCceeHHHHHHHHHHHHhh
Q 028589 149 DGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN-------HDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 149 ~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d-------~~g~I~~~eF~~~l~~~~~~ 205 (207)
-+.|+.+||.++-+=..+ +...+..++..+..+ ..+.|+|+.|..+|..++..
T Consensus 5 ~~~lsp~eF~qLq~y~ey----s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~ 64 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY----STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV 64 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH--------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-
T ss_pred eeccCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC
Confidence 356777777776654421 223466666666322 35579999999999988753
No 148
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=77.82 E-value=15 Score=23.30 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=49.8
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHH
Q 028589 54 GMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQE 133 (207)
Q Consensus 54 g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (207)
..||..||.......+.+++.+.++.++..+-...-.-.+-++=..++..+ ...+++..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei---------------------a~iT~p~t 71 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI---------------------AKITSPQT 71 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH---------------------HHhcCHHH
Confidence 468999999999999999999999999988865544445555555555444 11255556
Q ss_pred HHHHHHHHHhh
Q 028589 134 EADLSEAFKVF 144 (207)
Q Consensus 134 ~~~l~~~f~~~ 144 (207)
...+..+|..|
T Consensus 72 a~~vn~Lf~qf 82 (85)
T PF11116_consen 72 AKQVNELFEQF 82 (85)
T ss_pred HHHHHHHHHHH
Confidence 66677777665
No 149
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=77.48 E-value=17 Score=23.75 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcC---CCCCceeHHHHHHHHHHHHhhc
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDR---NHDGRVDFFEFKNMMQSVLVRS 206 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~---d~~g~I~~~eF~~~l~~~~~~~ 206 (207)
...++.-|..+.. +|.|+++.|-.++ | ..-+.+=..+||..+-. -..+.|+.+|+..++.++...|
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---G--M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~s 97 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---G--MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQS 97 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---C--CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhccC
Confidence 5667777888866 8999999988876 5 33344445666655521 1367799999999998887654
No 150
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=76.23 E-value=7.8 Score=23.63 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 149 DGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 149 ~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
+-.|+...|..++... +.....+.|...|+.-..++|+-++|++.++.+.
T Consensus 6 sp~~~F~~L~~~l~~~-----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH-----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred CCcccHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455655666666555 3345566666677666788888888888887653
No 151
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.00 E-value=6.5 Score=34.95 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC------CCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLG------LTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~------~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
...+..+.++..|...|. ++|.++.+++..++...- .....+.+....++...|.+..|.+.+.++..++..
T Consensus 12 ~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 12 TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 444667889999999998 999999999998887651 112334455677888889988888888888777653
No 152
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=75.47 E-value=7.6 Score=27.44 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHHHhcC----CCCC-ceeHHHHHHHHHHhC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 40 RLRRVFDMFDK----NGDG-MITVKELHQALNLLG----LETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 40 ~l~~~F~~~D~----~~~g-~i~~~e~~~~l~~l~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.+++.|+.|.. ..+| .++-..|..++...+ ..++..++.-.|+.+-...-+.++|++|...+..+
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 34555555543 3344 677788888887764 45677778888877766666789999998877666
No 153
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.33 E-value=4.6 Score=26.35 Aligned_cols=60 Identities=12% Similarity=0.275 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH----HhhCCCCCCcccHHHHHHHHhhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTI----ASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~----~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..+++.|..+.. +|+|++.+|..|+.. .-+.+-+..|| ++-... ...|+-.|...+|..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM---~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGM---KDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCC---cccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 467777887777 899999999998763 23344444444 443333 4579999999998776
No 154
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=73.19 E-value=11 Score=30.33 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=70.3
Q ss_pred cCCchhHHHHHHHHHHh--cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccc
Q 028589 32 RCPSLNTLRLRRVFDMF--DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFF 109 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~--D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 109 (207)
..-+.+.+++..+...| |.|....+.-++|...+..+.......-++-|.+.+.+.-+|.|=|.|...-+...
T Consensus 38 ~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~----- 112 (355)
T PRK13654 38 LDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR----- 112 (355)
T ss_pred cCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-----
Confidence 33444556777777665 66778899999998876665444445566777777777778888888877654322
Q ss_pred ccccccccccccchhhhhhcccHHHHHHHHHHHhhcCC---CCCcccHHHHHHHHHHcCCC
Q 028589 110 PLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDED---GDGFISAHELQVVLGKLGLT 167 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d---~~G~i~~~e~~~~l~~~~~~ 167 (207)
...+.++|..+..| +-|+|+. .|+.+|+.
T Consensus 113 ------------------------nP~lae~F~lMaRDEARHAGFlNk-----am~df~l~ 144 (355)
T PRK13654 113 ------------------------NPLLAELFQLMARDEARHAGFLNK-----AMKDFGLS 144 (355)
T ss_pred ------------------------CcHHHHHHHHHhhhHHHHhhhHHH-----HHHHcCcc
Confidence 36778888888666 5788765 67777643
No 155
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=72.83 E-value=43 Score=30.26 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHhcCC-CCCceeHHHHHHHHHHh--------C----CCCC-HHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028589 37 NTLRLRRVFDMFDKN-GDGMITVKELHQALNLL--------G----LETD-LSELESTIASHVKPGNDGLEFEDFVSLHE 102 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~l--------~----~~~~-~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 102 (207)
...-..++|..++.. +...+...++..+|... | .++. +-.+..++..||...+|.|..-+|.-.+.
T Consensus 418 ~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i 497 (966)
T KOG4286|consen 418 SLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII 497 (966)
T ss_pred cHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH
Confidence 334556666666654 45566666666666422 2 1121 22457788999999999999998888877
Q ss_pred hhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-------HcCC-----CCCC
Q 028589 103 SLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLG-------KLGL-----TEGN 170 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~-------~~~~-----~~~~ 170 (207)
.+ +.....+.++.+|.....++.-.+ ...|..+|- .+|. +.++
T Consensus 498 ~l------------------------ck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNv 552 (966)
T KOG4286|consen 498 SL------------------------CKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNI 552 (966)
T ss_pred HH------------------------hcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Confidence 77 566677889999999977776654 555544443 3220 1222
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 171 EIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 171 t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
... ++.-|.. .++...|++..|+..+.
T Consensus 553 eps-vrsCF~~--v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 553 EPS-VRSCFQF--VNNKPEIEAALFLDWMR 579 (966)
T ss_pred ChH-HHHHHHh--cCCCCcchHHHHHHHhc
Confidence 222 5666663 34556688888887653
No 156
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=72.79 E-value=25 Score=23.40 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh
Q 028589 138 SEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 138 ~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~ 182 (207)
..+|-.++.-++-..+..+++.+|...| ...+++.++.++..+
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG--~E~d~e~i~~visel 46 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVG--AEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhC--cccCHHHHHHHHHHh
Confidence 4567788888999999999999999999 778889999999987
No 157
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.22 E-value=6.5 Score=32.09 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH-HhhCCCCCCcccHHHHHHHHh
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTI-ASHVKPGNDGLEFEDFVSLHE 102 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-~~~d~~~~g~i~~~eF~~~~~ 102 (207)
...+++.|...|+.++|+|+.+-+..+|..++..+++.+.-.+. ...|+..-|-|-..+|+.-+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 36789999999999999999999999999999767666555554 455666666666666665443
No 158
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=72.21 E-value=22 Score=22.55 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 147 DGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 147 d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
..+-.|+..+|+..|.... ...+..+...+=..+|...++.||--||--+.+-
T Consensus 18 g~r~IVPW~~F~~~L~~~h--~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 18 GKRTIVPWSEFRQALQKVH--PISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp TT-SEEEHHHHHHHHHHHS----SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CCCeEeeHHHHHHHHHHhc--CCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 3457899999999999984 2233355677777889999999999998766554
No 159
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=71.29 E-value=26 Score=23.32 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 028589 41 LRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSL 100 (207)
Q Consensus 41 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 100 (207)
+-..|..++.-++-..+..++..+|...|..+..+.+..+++.+. |+ +.+|.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 445677788888889999999999999999999999999999983 43 67776653
No 160
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=71.15 E-value=7.4 Score=31.17 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=68.4
Q ss_pred CCchhHHHHHHHHHHh--cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccc
Q 028589 33 CPSLNTLRLRRVFDMF--DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFP 110 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~--D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 110 (207)
.-....+++..+...| |.+....+.-+||......+.......-++-|.+.+.+.-+|.|=|.|...-+...
T Consensus 35 dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~------ 108 (351)
T CHL00185 35 DISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK------ 108 (351)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC------
Confidence 3344556777777665 66778899999998866665433444566777777777777888888877654332
Q ss_pred cccccccccccchhhhhhcccHHHHHHHHHHHhhcCC---CCCcccHHHHHHHHHHcCC
Q 028589 111 LNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDED---GDGFISAHELQVVLGKLGL 166 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d---~~G~i~~~e~~~~l~~~~~ 166 (207)
...+.++|..+..| +-|+|+. .|..+|+
T Consensus 109 -----------------------nP~lae~F~lMaRDEARHAGFlNk-----am~df~l 139 (351)
T CHL00185 109 -----------------------NPLLAEGFLLMSRDEARHAGFLNK-----AMSDFNL 139 (351)
T ss_pred -----------------------CcHHHHHHHHHhhhhHHHhhhHHH-----HHHHcCc
Confidence 36677888888666 5777765 6777664
No 161
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=70.24 E-value=8.3 Score=26.55 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028589 52 GDGMITVKELHQALNLL--GLETDLSELESTIASHVKPGNDGLEFEDFVSLHES 103 (207)
Q Consensus 52 ~~g~i~~~e~~~~l~~l--~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 103 (207)
-+|.|+.+|...+...+ ...++......+...++.-....+++.+|+..+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 48999999998877766 23355666777776665444446778888876655
No 162
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.17 E-value=30 Score=24.25 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=45.4
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 139 EAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 139 ~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
-+|+... -+|.++..|...+..-+...-.++.+++..++.....-+...++|..|...|..-
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 6788875 4567777776555544433355788999999998877677789999999888743
No 163
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.71 E-value=5.7 Score=25.87 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=33.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 148 GDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 148 ~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
-+|.++..|...+-..+.....++..+...++..+........++.+|...+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3677777776655544321123456667777776655555556777777776653
No 164
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.17 E-value=28 Score=22.50 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCceeHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 53 DGMITVKELHQALNLLG--LETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 53 ~g~i~~~e~~~~l~~l~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+|.++..|...+-..+. ..++..+...++..+........++.+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 78888888877665432 24677888888877765555668888888876554
No 165
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=68.99 E-value=12 Score=30.15 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHh--cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccc
Q 028589 35 SLNTLRLRRVFDMF--DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLN 112 (207)
Q Consensus 35 ~~~~~~l~~~F~~~--D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 112 (207)
+...+++..+...| |.|....+.-+||......+.......-++-|.+.+.+.-+|.+=|.|...-+...
T Consensus 37 s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-------- 108 (357)
T PLN02508 37 NLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT-------- 108 (357)
T ss_pred chhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC--------
Confidence 34556777777665 66777899999997766655433444566777777777778988888877754332
Q ss_pred cccccccccchhhhhhcccHHHHHHHHHHHhhcCC---CCCcccHHHHHHHHHHcCC
Q 028589 113 DLTSTATTDADEGNKKVLSQEEADLSEAFKVFDED---GDGFISAHELQVVLGKLGL 166 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d---~~G~i~~~e~~~~l~~~~~ 166 (207)
...+.++|..+..| +-|+|+. .|+.+|+
T Consensus 109 ---------------------nP~lae~F~lMaRDEARHAGFlNk-----am~Df~l 139 (357)
T PLN02508 109 ---------------------NPVVAEIFTLMSRDEARHAGFLNK-----ALSDFNL 139 (357)
T ss_pred ---------------------ChHHHHHHHHhCchhHHHHhHHHH-----HHHHcCc
Confidence 36778888888766 5777765 6776664
No 166
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=68.81 E-value=31 Score=31.53 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=79.4
Q ss_pred CCchhHHHH-HHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHH-HHHHhhCCCCCCcccHHHHHHHHhhhhccccc
Q 028589 33 CPSLNTLRL-RRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELE-STIASHVKPGNDGLEFEDFVSLHESLDETFFP 110 (207)
Q Consensus 33 ~~~~~~~~l-~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~-~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 110 (207)
.++.+++.+ ++.+...|......|+.+++..+|...+..++..-+. .-+.... -..+.++|.+|..+...+
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~-~~k~dlsf~~f~~ly~~l------ 209 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDG-ARKDDLSFEQFHLLYKKL------ 209 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhh-hccccccHHHHHHHHHHH------
Confidence 345555444 4445556766667799999999998887665443322 2332222 234669999999987666
Q ss_pred cccccccccccchhhhhhcccHHHHHHHH---HHHh--hcCCCCCcccHHHHHHHHHHcCCCCCC-cHHHHHHHHHhhcC
Q 028589 111 LNDLTSTATTDADEGNKKVLSQEEADLSE---AFKV--FDEDGDGFISAHELQVVLGKLGLTEGN-EIARVQQMIGSVDR 184 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~f~~--~D~d~~G~i~~~e~~~~l~~~~~~~~~-t~~e~~~l~~~~d~ 184 (207)
........+.. .|-. -+...--.|+..+|+++|......+-. .-..++.++..+=.
T Consensus 210 ------------------mfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~ 271 (1267)
T KOG1264|consen 210 ------------------MFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFID 271 (1267)
T ss_pred ------------------hhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHh
Confidence 11111111111 1111 111122578999999998755311111 11134455554411
Q ss_pred C-----CCCceeHHHHHHHHH
Q 028589 185 N-----HDGRVDFFEFKNMMQ 200 (207)
Q Consensus 185 d-----~~g~I~~~eF~~~l~ 200 (207)
| ....+.+.||+.+|-
T Consensus 272 D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 272 DTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhhhccCcceeHHHHHHHHh
Confidence 1 356799999998874
No 167
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=68.66 E-value=11 Score=29.84 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHh--cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccc
Q 028589 36 LNTLRLRRVFDMF--DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLND 113 (207)
Q Consensus 36 ~~~~~l~~~F~~~--D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 113 (207)
.+.++++.+...| |.|....+.-++|......+.......-++-|.+.+.+.-+|.|=|.|...-+...
T Consensus 22 ~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~--------- 92 (323)
T cd01047 22 KNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT--------- 92 (323)
T ss_pred hhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC---------
Confidence 3446666666655 66778899999998866665444455566777777777778888888877654332
Q ss_pred ccccccccchhhhhhcccHHHHHHHHHHHhhcCC---CCCcccHHHHHHHHHHcCC
Q 028589 114 LTSTATTDADEGNKKVLSQEEADLSEAFKVFDED---GDGFISAHELQVVLGKLGL 166 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d---~~G~i~~~e~~~~l~~~~~ 166 (207)
...+.++|..+..| +-|+|+. .|+.+|+
T Consensus 93 --------------------nP~lae~F~lMaRDEARHAGFlNk-----am~df~l 123 (323)
T cd01047 93 --------------------NPVVAELFRLMARDEARHAGFLNK-----ALSDFNL 123 (323)
T ss_pred --------------------CcHHHHHHHHHhhhHHHHhhhHHH-----HHHHcCc
Confidence 35677888888666 5788765 6777664
No 168
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=68.48 E-value=35 Score=28.32 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCC
Q 028589 71 ETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDG 150 (207)
Q Consensus 71 ~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G 150 (207)
.++.+++...|+.. -.....|-|..|...+... -....--+.-.+-.-+|..+++
T Consensus 171 riTKadA~~FWr~~-fg~k~ivPW~~F~q~L~~~------------------------Hpi~~gleAmaLktTIDLtcnd 225 (563)
T KOG1785|consen 171 RITKADAAEFWRKH-FGKKTIVPWKTFRQALHKV------------------------HPISSGLEAMALKTTIDLTCND 225 (563)
T ss_pred eeccccHHHHHHHh-cCCcccccHHHHHHHHHhc------------------------CCCcchhHHHHhhceecccccc
Confidence 36777888888776 3344578899998887766 1111112222334457889999
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh---cCCCCCc---eeHHHHHHHHHHHHhhc
Q 028589 151 FISAHELQVVLGKLGLTEGNEIARVQQMIGSV---DRNHDGR---VDFFEFKNMMQSVLVRS 206 (207)
Q Consensus 151 ~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~---d~d~~g~---I~~~eF~~~l~~~~~~~ 206 (207)
+|+.-||--+-+.|. + +..+++.| -...-|+ ++|+|-..-|+++..|-
T Consensus 226 ~iS~FEFDvFTRLFq--P------w~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~~~Kp 279 (563)
T KOG1785|consen 226 FISNFEFDVFTRLFQ--P------WKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKYIKKP 279 (563)
T ss_pred ceeeehhhhHHHhhc--c------HHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHHhcCC
Confidence 999988876665553 2 45555544 2344555 89999998888887663
No 169
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=67.42 E-value=45 Score=27.12 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHH
Q 028589 78 ESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHEL 157 (207)
Q Consensus 78 ~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~ 157 (207)
..++.-+|+.+.|.++.--....+... +...-.++++.+|... .|.+|.+..-.+
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatl------------------------c~gk~~dklryIfs~i-sds~gim~~i~~ 167 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATL------------------------CGGKIKDKLRYIFSLI-SDSRGIMQEIQR 167 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhh------------------------ccchHHHHHHHHHHHH-ccchHHHHHHHH
Confidence 444555666666665554443333333 4455678899999988 578899988888
Q ss_pred HHHHHHc
Q 028589 158 QVVLGKL 164 (207)
Q Consensus 158 ~~~l~~~ 164 (207)
.+++.+.
T Consensus 168 ~~fl~ev 174 (434)
T KOG4301|consen 168 DQFLHEV 174 (434)
T ss_pred HHHHHHH
Confidence 8888765
No 170
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=66.11 E-value=11 Score=30.11 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCchhHHHHHHHHHHh--cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccc
Q 028589 33 CPSLNTLRLRRVFDMF--DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFP 110 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~--D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 110 (207)
.-+...+++..+...| |.|....+.-++|......+.......-++-|.+.+.+.-+|.|=|.|...-+..
T Consensus 29 d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~------- 101 (337)
T TIGR02029 29 DVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN------- 101 (337)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC-------
Confidence 3344556777777665 6677789999999876655433334446667777777777788888877764433
Q ss_pred cccccccccccchhhhhhcccHHHHHHHHHHHhhcCC---CCCcccHHHHHHHHHHcCC
Q 028589 111 LNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDED---GDGFISAHELQVVLGKLGL 166 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d---~~G~i~~~e~~~~l~~~~~ 166 (207)
....+.++|..+..| +-|+|+. .|+.+|+
T Consensus 102 ----------------------~~P~lae~F~~MaRDEARHAGFlNk-----am~df~l 133 (337)
T TIGR02029 102 ----------------------RDPVVAELFQLMARDEARHAGFLNK-----ALGDFGL 133 (337)
T ss_pred ----------------------CChHHHHHHHHHhhhhHHHhhhHHH-----HHHHcCc
Confidence 235677888888666 5788765 6777764
No 171
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=65.78 E-value=23 Score=21.59 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 137 LSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 137 l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
+..+...|+.-+.+.|++++|.+.++.+
T Consensus 27 ~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 27 MDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444444444478999999999999987
No 172
>PLN02228 Phosphoinositide phospholipase C
Probab=65.76 E-value=36 Score=29.82 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhhh
Q 028589 38 TLRLRRVFDMFDKNGDGMITVKELHQALNLLGL--ETDLSELESTIASHVKP----GNDGLEFEDFVSLHESL 104 (207)
Q Consensus 38 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~~~~~ 104 (207)
..++..+|..+-.+ +.|+.++|..+|..... ..+...+..++..+... ..+.++...|..++...
T Consensus 23 ~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 23 PVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred cHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 36889999888643 58999999999987743 35567788999888643 23679999999998654
No 173
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=64.95 E-value=66 Score=25.22 Aligned_cols=64 Identities=9% Similarity=0.174 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhc--CCCCCceeHHHHHHHHHHhC--CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFD--KNGDGMITVKELHQALNLLG--LETDLSE---LESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D--~~~~g~i~~~e~~~~l~~l~--~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
+...+..+|..+- ..-+|.|+..|+. +.+.+. ..++.+. +..+|..-- ....++.+|+..+...
T Consensus 51 q~~ff~a~~aLl~~vAkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 51 QALFFNTTFAVMGHLAKAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK---EPDFPLREKLRQFRSV 121 (267)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHH
Confidence 3344445554443 2458999999997 344331 3355565 666666553 3348889998877654
No 174
>PLN02222 phosphoinositide phospholipase C 2
Probab=64.89 E-value=31 Score=30.30 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFDKNGDGMITVKELHQALNLLGL--ETDLSELESTIASHVK-PGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~~~~~ 104 (207)
...++..+|..+.. ++.++.++|..+|..... ..+.+.+..|+..+.. ...+.++++.|..++..-
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 34588999998864 479999999999987754 3567888888887632 235679999999998653
No 175
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=64.11 E-value=31 Score=22.90 Aligned_cols=49 Identities=6% Similarity=0.201 Sum_probs=27.7
Q ss_pred hhcCCCCCcccHHHHHHHHHHc--------CCCCCCcHHHHHHHHHhhcCCCCCcee
Q 028589 143 VFDEDGDGFISAHELQVVLGKL--------GLTEGNEIARVQQMIGSVDRNHDGRVD 191 (207)
Q Consensus 143 ~~D~d~~G~i~~~e~~~~l~~~--------~~~~~~t~~e~~~l~~~~d~d~~g~I~ 191 (207)
.+|+..+-+|+.+++.++++.- .-++.+|...+-+|+-.-...+...++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 4677777777777777777632 011455555555555554433444443
No 176
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.83 E-value=25 Score=29.47 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 130 LSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 130 ~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
+....+.++.+-+.+|.|.+|.|+.+|=-.+|++--.....+.. -.+-|. ..|..|+.+++-..+....
T Consensus 63 dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~k-r~~~fH----~dD~~ItVedLWeaW~~Se 131 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRK-RSEKFH----GDDKHITVEDLWEAWKESE 131 (575)
T ss_pred chhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhh-hhhhcc----CCccceeHHHHHHHHHhhh
Confidence 45567889999999999999999999998888865221211111 122222 1455677777766665443
No 177
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=59.79 E-value=58 Score=22.81 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHhhc-------CCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhc
Q 028589 136 DLSEAFKVFD-------EDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVD 183 (207)
Q Consensus 136 ~l~~~f~~~D-------~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d 183 (207)
++..+.+.|. .+..+.|+.+.|+.+|+.. +...+.++-+..||..+-
T Consensus 26 klkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y-Le~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 26 KLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY-LEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp -HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH-TT-S--HHHHHHHHHHS-
T ss_pred HHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 4555555552 2345699999999999998 445577777789998874
No 178
>PLN02230 phosphoinositide phospholipase C 4
Probab=59.41 E-value=53 Score=29.06 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCC-------CCCcccHHHHHHHHhhh
Q 028589 37 NTLRLRRVFDMFDKNGDGMITVKELHQALNLLGL---ETDLSELESTIASHVKP-------GNDGLEFEDFVSLHESL 104 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~---~~~~~~~~~l~~~~d~~-------~~g~i~~~eF~~~~~~~ 104 (207)
-..++..+|..+..++ +.++.++|...|..... ..+.+++..++..+-.. ..+.+++..|..++...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 3468999999996544 89999999999988753 34667777777544211 23469999999988653
No 179
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=59.28 E-value=28 Score=18.98 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcC--CCCCcccHHHHHHHHHHc
Q 028589 135 ADLSEAFKVFDE--DGDGFISAHELQVVLGKL 164 (207)
Q Consensus 135 ~~l~~~f~~~D~--d~~G~i~~~e~~~~l~~~ 164 (207)
..+..+|+.|.. .....|+..||+.++..-
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 456677777742 245688888888888654
No 180
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=58.91 E-value=47 Score=30.74 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHHhhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL----------GLETDLSELESTIASHVKPG----NDGLEFEDFVSLHESL 104 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l----------~~~~~~~~~~~l~~~~d~~~----~g~i~~~eF~~~~~~~ 104 (207)
.+++++|..+..++.-++|.++|..+|..- ........+..|+..+..+. .|.++-+-|+.++..-
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 688999999999988999999999999742 33467889999999998875 5889999999987654
No 181
>PHA03155 hypothetical protein; Provisional
Probab=58.52 E-value=51 Score=22.13 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=61.4
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHH
Q 028589 55 MITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEE 134 (207)
Q Consensus 55 ~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (207)
..+.+|+..=|..|. +-...+..-+..-...+++.++-.+=-.++... ...-..
T Consensus 7 ~~tvEeLaaeL~kL~--~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~------------------------v~~Lt~ 60 (115)
T PHA03155 7 CADVEELEKELQKLK--IENKALKKKLLQHGNPEDELLTPAQKDAIINSL------------------------VNKLTK 60 (115)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHccCCCCccccCHHHHHHHHHHH------------------------HHHHHH
Confidence 455666666565543 233455555544434556777777666655555 333334
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHH
Q 028589 135 ADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQM 178 (207)
Q Consensus 135 ~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l 178 (207)
...+.+.....++-.+.++.+++.+++..+.+...++.++....
T Consensus 61 ~A~~KIe~kVrk~~~~~vTk~q~~~al~~lt~RidvSmde~~~~ 104 (115)
T PHA03155 61 KAEEKIRERVLKDLLPLVSKNQCMEAIADIKYRIDVSIDESQDL 104 (115)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHhcCeeeEEecccchhcc
Confidence 45566677777777888999999999998876666666655443
No 182
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=58.07 E-value=64 Score=26.88 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=65.4
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccccccccc
Q 028589 42 RRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTD 121 (207)
Q Consensus 42 ~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~ 121 (207)
..+|+.+ -.....|..+.|+++|.......+--++..+-..+|...++.|+--||=.+-..+
T Consensus 178 ~~FWr~~-fg~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF----------------- 239 (563)
T KOG1785|consen 178 AEFWRKH-FGKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF----------------- 239 (563)
T ss_pred HHHHHHh-cCCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh-----------------
Confidence 3344443 2346789999999999887655555677788889999999999888877665544
Q ss_pred chhhhhhcccHHHHHHHHHHHhhcCCCCC---cccHHHHHHHHHHc
Q 028589 122 ADEGNKKVLSQEEADLSEAFKVFDEDGDG---FISAHELQVVLGKL 164 (207)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~f~~~D~d~~G---~i~~~e~~~~l~~~ 164 (207)
.....+..-++.+...+-| +++.+|++.-|..+
T Consensus 240 ----------qPw~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 240 ----------QPWKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred ----------ccHHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHH
Confidence 2224444445556666666 67888888777754
No 183
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=57.55 E-value=56 Score=21.97 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVS 99 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 99 (207)
++-..|..+..-++..+|.+++..+|...|..+...++..+++.+. ..+.++.+.
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3445566677777888999999999999999999999999998883 267777776
No 184
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=57.33 E-value=13 Score=16.80 Aligned_cols=14 Identities=43% Similarity=0.722 Sum_probs=7.1
Q ss_pred cCCCCCcccHHHHH
Q 028589 145 DEDGDGFISAHELQ 158 (207)
Q Consensus 145 D~d~~G~i~~~e~~ 158 (207)
|.+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34556666555543
No 185
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=56.90 E-value=3.9 Score=30.33 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=40.3
Q ss_pred HHhcCC-CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 46 DMFDKN-GDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 46 ~~~D~~-~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..+|.. .+|+|+..|+.-+-.-+ -+-+.-+.+.|..+|.|+|++|...||-..+...
T Consensus 194 ~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 194 GQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred ccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 344553 57888887765422111 1335577889999999999999999999887655
No 186
>PHA02105 hypothetical protein
Probab=54.71 E-value=26 Score=20.30 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHHcCCCC-CCcHHHHHHHHHhhcCCC--CCceeHHHHHHHHH
Q 028589 151 FISAHELQVVLGKLGLTE-GNEIARVQQMIGSVDRNH--DGRVDFFEFKNMMQ 200 (207)
Q Consensus 151 ~i~~~e~~~~l~~~~~~~-~~t~~e~~~l~~~~d~d~--~g~I~~~eF~~~l~ 200 (207)
++++++|..++......+ ++..+-++++-..+..-. --.++|+||-..|-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 478889988887664322 344555666666665443 33489999977654
No 187
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=53.09 E-value=32 Score=20.51 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=29.9
Q ss_pred HhhcCCCCCcccHHHHHHHHHHc--------CCCCCCcHHHHHHHHHhh
Q 028589 142 KVFDEDGDGFISAHELQVVLGKL--------GLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 142 ~~~D~d~~G~i~~~e~~~~l~~~--------~~~~~~t~~e~~~l~~~~ 182 (207)
+.+|+..+.+|+.+++.++++.= ..+..+|...+-+++..-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 35799999999999999999842 112667777776666543
No 188
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.57 E-value=14 Score=36.38 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=53.5
Q ss_pred cCCchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 32 RCPSLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLET----DLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~----~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
.......+.+.++|..+|++..|+|...++...++.+..++ ..+. +-+...+....++.|++.+-+..+...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 34566778999999999999999999999999999875432 1111 333333444467889999999888766
No 189
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=49.49 E-value=66 Score=20.43 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC
Q 028589 150 GFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN 185 (207)
Q Consensus 150 G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d 185 (207)
..||..||..+.+.++ .++|.+..+.++..+-..
T Consensus 13 n~iT~~eLlkyskqy~--i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYN--ISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcC
Confidence 4688999999999998 778888888888877433
No 190
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=47.97 E-value=22 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.0
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHH
Q 028589 55 MITVKELHQALNLLGLETDLSELESTI 81 (207)
Q Consensus 55 ~i~~~e~~~~l~~l~~~~~~~~~~~l~ 81 (207)
.|+.++|..+|..+...++.+++.+.-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 588899999999988888888887654
No 191
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=47.61 E-value=46 Score=19.54 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=23.9
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028589 54 GMITVKELHQALNLLGLETDLSELESTIASH 84 (207)
Q Consensus 54 g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~ 84 (207)
-.+|.+|+...+..++-.++..++-.||..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4577788888888888778888887777665
No 192
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=47.54 E-value=23 Score=22.11 Aligned_cols=44 Identities=7% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcC
Q 028589 135 ADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDR 184 (207)
Q Consensus 135 ~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~ 184 (207)
..++.+...- -..|+||.+++..+|.... ++.+.+..++..+..
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~----~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPEDD----LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S-S-------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCccC----CCHHHHHHHHHHHHH
Confidence 3444444332 2579999999999986443 677888988887743
No 193
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=47.30 E-value=37 Score=26.62 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=34.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 147 DGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 147 d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
--||.|+..|+. +.+.+-....++.++...+...+........++.+|+..+...+
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 458999999987 44443111224556644444555444455588999998887643
No 194
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=46.87 E-value=40 Score=17.18 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHH
Q 028589 151 FISAHELQVVLGKLGLTEGNEIARVQQ 177 (207)
Q Consensus 151 ~i~~~e~~~~l~~~~~~~~~t~~e~~~ 177 (207)
.++..|++.+|+..|++..-+..++..
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K~~Li~ 29 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKKAELIE 29 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSHHHHHH
T ss_pred cCcHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 467788888888888666666655543
No 195
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=46.75 E-value=88 Score=21.05 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhc
Q 028589 138 SEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVD 183 (207)
Q Consensus 138 ~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d 183 (207)
..+|...-.-++..+|.+++..+|+..| .......+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaG--veVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVN--ADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcC--CCccHHHHHHHHHHHc
Confidence 3456666677888899999999999999 6677777888888873
No 196
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=45.78 E-value=14 Score=27.42 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHhhcCC-CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 028589 139 EAFKVFDED-GDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMM 199 (207)
Q Consensus 139 ~~f~~~D~d-~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l 199 (207)
.-|-.+|.. .+|.++..||.-+-.. ...-+.-+..+|...|.|.||.|+++|+-..+
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap----~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAP----LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeccccCCCccccccccccccccCC----cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 445666665 6899999886544211 11122224778889999999999999987654
No 197
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.59 E-value=49 Score=24.39 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=25.6
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 028589 49 DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVK 86 (207)
Q Consensus 49 D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~ 86 (207)
..|.+|+++.+++...+..-+..++.+++..++...+.
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45789999999999999887777889999999987653
No 198
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=44.88 E-value=76 Score=21.21 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028589 42 RRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHE 102 (207)
Q Consensus 42 ~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 102 (207)
-..|..+...++..+|.+++..+|...|..+...++..+++.+. | .+..+.+.--.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~----G-Kdi~eLIa~g~ 59 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE----G-KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHHhH
Confidence 34556666778889999999999999999999999999998873 2 67777777543
No 199
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.49 E-value=41 Score=27.97 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 028589 137 LSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNM 198 (207)
Q Consensus 137 l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~ 198 (207)
...+|-.+. --+|+|+-..-+..|-... +.+..+-.+++..|.|.||.++-+||.-+
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~sk----lpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVKSK----LPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHhcc----CchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 455665553 4678998888777775554 45677999999999999999999999754
No 200
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=43.44 E-value=46 Score=16.85 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=18.3
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHH
Q 028589 151 FISAHELQVVLGKLGLTEGNEIARVQ 176 (207)
Q Consensus 151 ~i~~~e~~~~l~~~~~~~~~t~~e~~ 176 (207)
.++..+++.+++..|++..-+..++.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K~~Lv 28 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTKAELV 28 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHH
Confidence 56788888888888866555555543
No 201
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=42.87 E-value=32 Score=29.99 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=44.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCC--CCceeHHHHHHHHHHHHhh
Q 028589 138 SEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNH--DGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 138 ~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~--~g~I~~~eF~~~l~~~~~~ 205 (207)
..+|++.|.|+.-.|+...+.+.|.++. .+ +++-+....+|+ .=.|+|.|+..++.+.+..
T Consensus 589 DYlFHqvtedg~p~lDlaHvl~CLNKLD--AG-----~~EkI~LvSrDE~t~IIvSY~ELK~~le~t~~m 651 (655)
T KOG3741|consen 589 DYLFHQVTEDGKPWLDLAHVLQCLNKLD--AG-----IQEKILLVSRDELTCIIVSYKELKTILEKTFRM 651 (655)
T ss_pred HhhheEeccCCChhhhHHHHHHHhhhcc--cc-----chhheeEeccCCCcEEEEEHHHHHHHHHHhhcc
Confidence 3678889999999999999888888875 22 344445554444 4458999999988776653
No 202
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.64 E-value=1.1e+02 Score=21.13 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=18.6
Q ss_pred ceeHHHHHHHHH-HhCCCCCHHHHHHHHHhh
Q 028589 55 MITVKELHQALN-LLGLETDLSELESTIASH 84 (207)
Q Consensus 55 ~i~~~e~~~~l~-~l~~~~~~~~~~~l~~~~ 84 (207)
.+...+|..++. .++ ++...+.++++.+
T Consensus 38 ~l~HGef~~Wle~~~~--~s~rtA~~~M~va 66 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEVG--YSQRTAQRFMQVA 66 (130)
T ss_pred hCCHHHHHHHHHHHcC--cCHHHHHHHHHHH
Confidence 478889999997 666 4455555554443
No 203
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=41.54 E-value=61 Score=17.74 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028589 59 KELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVS 99 (207)
Q Consensus 59 ~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 99 (207)
+|...+|..+| .+..++...+..... ...++.++.+.
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 57788888888 668899998888864 33466666554
No 204
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=41.51 E-value=17 Score=30.83 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccccc---ccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcc
Q 028589 76 ELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLT---STATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFI 152 (207)
Q Consensus 76 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i 152 (207)
.+..++ .+-...++.-+++||..++...++......... ..-.++.+...+.....-..-+.-+--.||.+++..|
T Consensus 290 ~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~M~FD~ERSD~V 368 (445)
T PF13608_consen 290 EIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLMMMFDAERSDCV 368 (445)
T ss_pred HHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHHHHhCchhhHHH
Confidence 444445 444444566777888777776655444322211 1111222222222222223334445566788887755
Q ss_pred --cHHHHHHHHHHcCCCCC-CcHHHHHHHHH
Q 028589 153 --SAHELQVVLGKLGLTEG-NEIARVQQMIG 180 (207)
Q Consensus 153 --~~~e~~~~l~~~~~~~~-~t~~e~~~l~~ 180 (207)
....|+.++..+|.... .+-+++..++.
T Consensus 369 yKiLnKlK~v~st~~~~V~hQSLDdi~~~~e 399 (445)
T PF13608_consen 369 YKILNKLKGVFSTMGQDVRHQSLDDIEDIFE 399 (445)
T ss_pred HHHHHHHHHHHhccCCCccCCCccchhhhhh
Confidence 34567777777763211 23445555553
No 205
>PF14178 YppF: YppF-like protein
Probab=40.75 E-value=77 Score=18.65 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 154 AHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 154 ~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
..++++.+.......+.+..++-...+..-. .|.|+..||..+++.+
T Consensus 3 l~eLk~~F~~~k~y~p~~~NeLLDFar~~Yi--~gei~i~eYR~lvreL 49 (60)
T PF14178_consen 3 LHELKQKFMQKKKYEPEDMNELLDFARKLYI--QGEISINEYRNLVREL 49 (60)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 3455555544433344444444444443323 4557777776666544
No 206
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=40.22 E-value=77 Score=23.27 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 028589 50 KNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFE 95 (207)
Q Consensus 50 ~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ 95 (207)
.|.+|+++.+++...++.-+..++.+++..++..-| .++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 478999999999999876566789999999987655 4555554
No 207
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=38.71 E-value=62 Score=19.13 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=4.7
Q ss_pred cccHHHHHHHHHHc
Q 028589 151 FISAHELQVVLGKL 164 (207)
Q Consensus 151 ~i~~~e~~~~l~~~ 164 (207)
.++.+|...++..+
T Consensus 14 ~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 14 DLSREEAKAAFDAI 27 (66)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444443
No 208
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=38.60 E-value=1.1e+02 Score=20.68 Aligned_cols=52 Identities=12% Similarity=0.253 Sum_probs=41.9
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028589 43 RVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVS 99 (207)
Q Consensus 43 ~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 99 (207)
..|...-..++..+|.+++..+|...|..+...++..+++.+. | .+..+.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 3455555667778999999999999999999999999998883 2 67777774
No 209
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=38.06 E-value=63 Score=26.32 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 137 LSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 137 l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
+......+|..+.|.++....+-++.... -+.-.+.++-||... .|.+|.+.+-.|..+++..+
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc--~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLC--GGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhc--cchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHH
Confidence 33455678999999999999998888775 323345577777776 56788888888887777654
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=38.06 E-value=1.5e+02 Score=25.93 Aligned_cols=65 Identities=17% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh---C--CCCCHHHHHHHHHhhCCCC--------CCcccHHHHHHHHhhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL---G--LETDLSELESTIASHVKPG--------NDGLEFEDFVSLHESL 104 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l---~--~~~~~~~~~~l~~~~d~~~--------~g~i~~~eF~~~~~~~ 104 (207)
..+..+|..+- .+.|.++...+.+.|..+ . ...+.++++.|+..+-... .+.++.+.|..++..-
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 57888898884 677899999999988443 2 3466777787776653221 2569999999998654
No 211
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.33 E-value=84 Score=18.79 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=27.2
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028589 53 DGMITVKELHQALNLLGLETDLSELESTIASH 84 (207)
Q Consensus 53 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~ 84 (207)
+--|+.+-++.++.+.|..+++..+..+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688888999999999999999999888765
No 212
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=37.21 E-value=18 Score=23.52 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=9.7
Q ss_pred CCcccHHHHHHHHHHc
Q 028589 149 DGFISAHELQVVLGKL 164 (207)
Q Consensus 149 ~G~i~~~e~~~~l~~~ 164 (207)
||.++.+|...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 5666666666555554
No 213
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=36.95 E-value=1.4e+02 Score=20.50 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHhhcCCC--CCcccHHHHHHHHHHc--------CCCCC--------CcHHHHHHHHHhhcCCCCCceeH
Q 028589 131 SQEEADLSEAFKVFDEDG--DGFISAHELQVVLGKL--------GLTEG--------NEIARVQQMIGSVDRNHDGRVDF 192 (207)
Q Consensus 131 ~~~~~~l~~~f~~~D~d~--~G~i~~~e~~~~l~~~--------~~~~~--------~t~~e~~~l~~~~d~d~~g~I~~ 192 (207)
.-....+..+|+.+..+. +..|+..++..++..+ +...+ .++--+..++..||.+..|.|+.
T Consensus 37 lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~v 116 (127)
T PF09068_consen 37 LVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRV 116 (127)
T ss_dssp G--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEH
T ss_pred eeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeeh
Confidence 344566778888887654 4679999999988865 11111 11223567889999999999999
Q ss_pred HHHHHHHH
Q 028589 193 FEFKNMMQ 200 (207)
Q Consensus 193 ~eF~~~l~ 200 (207)
-.|.-.+.
T Consensus 117 ls~KvaL~ 124 (127)
T PF09068_consen 117 LSFKVALI 124 (127)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 98877664
No 214
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=36.88 E-value=67 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=24.2
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhc
Q 028589 145 DEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVD 183 (207)
Q Consensus 145 D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d 183 (207)
..|.+|+++.++|...+..-+ ..+|.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~--~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG--LWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT---TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcC--CCCCHHHHHHHHhhCC
Confidence 468999999999999998876 5578899999887644
No 215
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=36.65 E-value=9.5 Score=26.26 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 148 GDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 148 ~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
-||.|+.+|...+...+.....++..+...++..++.-....+++.+|+..+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 57788888877666655111234445566666665544444566666665543
No 216
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=36.53 E-value=1.3e+02 Score=20.09 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=41.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 138 SEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 138 ~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
..+|...-.-++..+|.+++..+|+..| .......+..+++.+.. .+..+++..-.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaG--veVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVG--VEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcC--CCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 3456666677888999999999999999 66777777888877732 34566655443
No 217
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=34.71 E-value=1.4e+02 Score=19.96 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHhhc
Q 028589 157 LQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVRS 206 (207)
Q Consensus 157 ~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~~ 206 (207)
+..++.-+. ..++.+|-..+....+.-.+|.|++...+.+++.+..+.
T Consensus 55 l~Hi~Gyfk--~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry 102 (117)
T PF08349_consen 55 LQHIFGYFK--KKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRY 102 (117)
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHC
Confidence 444444444 456777877788877777889999999999988887653
No 218
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=34.48 E-value=56 Score=19.49 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.1
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 028589 52 GDGMITVKELHQALNLLGLETDLSELESTIASHVKPG 88 (207)
Q Consensus 52 ~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~ 88 (207)
.++-++..++...|..-|..++++.+...++.++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567899999999998899999999999999987665
No 219
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=34.33 E-value=79 Score=19.39 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHcCCCCCCcHHHHH
Q 028589 153 SAHELQVVLGKLGLTEGNEIARVQ 176 (207)
Q Consensus 153 ~~~e~~~~l~~~~~~~~~t~~e~~ 176 (207)
++.+|...|...|++.+.+.+++.
T Consensus 47 s~~eF~~~L~~~gI~~~~~~eel~ 70 (76)
T PF03683_consen 47 SRWEFLELLKERGIPINYDEEELE 70 (76)
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHH
Confidence 566666666666655445555543
No 220
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=34.27 E-value=1.4e+02 Score=20.21 Aligned_cols=53 Identities=8% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 028589 146 EDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 200 (207)
Q Consensus 146 ~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~ 200 (207)
.|||.....--...+|...|.....+++++..++..+-.+.. ++.+++...++
T Consensus 68 ~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~~~~--~~~e~i~~wl~ 120 (121)
T TIGR01550 68 NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVATGET--ISVESLADWLR 120 (121)
T ss_pred ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHh
Confidence 577777777777888888887777788888777776633222 88888887764
No 221
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=33.78 E-value=68 Score=22.38 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHHHHHcC-------CCCCCcHHHHHHHHHhhcCCCCC-ceeHHHHHHH
Q 028589 148 GDGFISAHELQVVLGKLG-------LTEGNEIARVQQMIGSVDRNHDG-RVDFFEFKNM 198 (207)
Q Consensus 148 ~~G~i~~~e~~~~l~~~~-------~~~~~t~~e~~~l~~~~d~d~~g-~I~~~eF~~~ 198 (207)
|+-.||.+||.+++..-. .-..++.++++.+.+.+.....+ .+++.|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 788999999999998652 12245888999999998776555 4999887764
No 222
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=33.18 E-value=1.9e+02 Score=20.96 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=24.3
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC
Q 028589 56 ITVKELHQALNLLGLETDLSELESTIASHVKPGND 90 (207)
Q Consensus 56 i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g 90 (207)
|+..+...-|...|++........++..+-.++.|
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~ 36 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEG 36 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCC
Confidence 34456666777778877777777777777666655
No 223
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=33.17 E-value=2.6e+02 Score=22.50 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCCC---cccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHHh
Q 028589 133 EEADLSEAFKVFDEDGDG---FISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G---~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~~ 204 (207)
....+..++..++..++| .|+...++.|+..|.-...--...++.+..+|-... =+|+.+++.|...+.
T Consensus 225 dl~~i~~m~~sl~~~g~g~~~~~~~A~YQAWqAgFdaq~~~iqsn~Qtl~qKYSqAN---StFDNLVKVLSstIs 296 (308)
T TIGR02553 225 DPTPLIKMRDDLPPLGTGTELEWDNAKYQAWQSGFKAQEENIKNTLQTLTQKYSNAN---SLFDNLVKVLSSTIS 296 (308)
T ss_pred ChHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHH
Confidence 345677778888766655 589999999998873111111223566777774332 478999888876553
No 224
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=32.49 E-value=1.5e+02 Score=19.62 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=36.7
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028589 56 ITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHES 103 (207)
Q Consensus 56 i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 103 (207)
+|.+++..+|...|..+...++..+++.+. ..+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999999999998873 2677888875543
No 225
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=32.27 E-value=1e+02 Score=18.66 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL----GLETDLSELESTIASH 84 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l----~~~~~~~~~~~l~~~~ 84 (207)
..+..+...++....-.+-..+++.++..+ |...+++.+..+|+.|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 344555555554434455556777777654 6667888888888765
No 226
>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family. Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.
Probab=31.98 E-value=2.6e+02 Score=26.07 Aligned_cols=166 Identities=10% Similarity=0.161 Sum_probs=84.2
Q ss_pred cCCchhHHHHHHHHHHhcC-CCCCceeHHHHHHHHHH----hCCCC-CHHHHHHHHHhhCCCC-----CCcccHHHHHHH
Q 028589 32 RCPSLNTLRLRRVFDMFDK-NGDGMITVKELHQALNL----LGLET-DLSELESTIASHVKPG-----NDGLEFEDFVSL 100 (207)
Q Consensus 32 ~~~~~~~~~l~~~F~~~D~-~~~g~i~~~e~~~~l~~----l~~~~-~~~~~~~l~~~~d~~~-----~g~i~~~eF~~~ 100 (207)
+.+..-.+.+..++..|.. +=.|.|..+-+.++++. +...+ +-+.++.++...+.+- .|+|+..=|..+
T Consensus 381 Rln~~~~~~le~ai~rfEs~dl~~ivele~ll~i~r~TH~LLse~l~~Ld~Fd~ml~Ean~~vs~~s~~gRI~~hv~~eL 460 (820)
T PF05994_consen 381 RLNALFRKSLEFAISRFESSDLTSIVELEHLLDILRLTHRLLSEHLLSLDPFDDMLREANHNVSPVSPYGRITLHVFWEL 460 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGHHHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHTT-SS--SSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 3344445677777888774 34677777766666653 23333 7788888998886553 477877777776
Q ss_pred Hhhhhccccccccccc-----cccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHH
Q 028589 101 HESLDETFFPLNDLTS-----TATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARV 175 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~ 175 (207)
...+.....-...... ....................+..+|..+-.--.|++....|+.+++-+| ..--.-.+
T Consensus 461 ~~D~~PNy~yn~~T~R~~~~~~~~r~k~p~~~~~~~~Gsk~l~~a~~~i~~~~~~FvG~pH~~ai~rLLg--~~~la~li 538 (820)
T PF05994_consen 461 NYDFLPNYCYNSSTQRMVFSEPVQREKPPKAQPSYLFGSKALNAAYQTILSLYRGFVGVPHFKAIVRLLG--YRGLAVLI 538 (820)
T ss_dssp HHTHHHHEEEETTTTEGGG-------------GGGTTSSHHHHHHHHHHGGGGGS-B-HHHHHHHHHHHH--HHHHHHHH
T ss_pred hcccccCceeeCCCCCCCCCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHHhCCccChHHHHHHHHHhC--CCcHHHHH
Confidence 5543222211111110 0000001111112222335677888888888899999999999999987 22112223
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHHHhh
Q 028589 176 QQMIGSVDRNHDGRVDFFEFKNMMQSVLVR 205 (207)
Q Consensus 176 ~~l~~~~d~d~~g~I~~~eF~~~l~~~~~~ 205 (207)
+++++.+ .+ .+..|+..+...+.+
T Consensus 539 ~ell~~i----~~--~~~~~V~~l~~~mPk 562 (820)
T PF05994_consen 539 EELLKLI----QN--KIEPYVKALMEAMPK 562 (820)
T ss_dssp HHHHHHH----HT--HHHHHHHHHHHHS-S
T ss_pred HHHHHHH----HH--HHHHHHHHHHHhCCc
Confidence 4444422 11 135566666555444
No 227
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=31.53 E-value=1.4e+02 Score=24.26 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCC--CcccHHHHHHHHhhhhccccccccccc
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLL-GLETDLSELESTIASHVKPGN--DGLEFEDFVSLHESLDETFFPLNDLTS 116 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~~~~d~~~~--g~i~~~eF~~~~~~~~~~~~~~~~~~~ 116 (207)
.++..+..+..+..| ++..++...++.+ ...+....+..++...+...- ..++ .+|+.-+.........+.....
T Consensus 102 ~ir~~i~k~~~~~~~-~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild-~eFl~~v~~~~~k~~~~e~L~~ 179 (335)
T PF11867_consen 102 AIRAAIRKLYSDDDG-PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILD-DEFLEEVKKMKSKNLKAELLEK 179 (335)
T ss_pred HHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcC-HHHHHHHHhccCchHHHHHHHH
Confidence 333444444444444 7777776666654 222333445555655543211 1234 5676665544222111111111
Q ss_pred cccccchhhhhhc---ccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc----------CCCCCCcHHHHHHHHHhh
Q 028589 117 TATTDADEGNKKV---LSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL----------GLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 117 ~~~~~~~~~~~~~---~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~----------~~~~~~t~~e~~~l~~~~ 182 (207)
.-...+....... .....+.++.+...| ++|.|+.+++..-|..+ +...++|++++ .+|..+
T Consensus 180 ~l~~~I~~~~~~N~~~~~~fsErLe~iI~~Y---~~~~i~~~e~~~eLi~la~el~~~~~r~~~~gLseeE~-AFyd~L 254 (335)
T PF11867_consen 180 LLRDEIKVRMKENPVRYKKFSERLEEIIEKY---NNRSISSEEVIEELIKLAKELREEEERAEELGLSEEEL-AFYDAL 254 (335)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH-HHHHHH
Confidence 1111111111111 122334444554444 67778888876666544 33355677664 334433
No 228
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=31.35 E-value=1.1e+02 Score=23.11 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcc-cHHHHHHHHHHcC
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFI-SAHELQVVLGKLG 165 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i-~~~e~~~~l~~~~ 165 (207)
.......+++..|+.+=.+.++.+ +.+-|..+|+.|-
T Consensus 78 ~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl 115 (205)
T PF12238_consen 78 MLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFL 115 (205)
T ss_pred hhhccHHHHHHHHHHhccCcccccccHHHHHHHHHHHh
Confidence 344556788888988877788888 9999999999883
No 229
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=30.69 E-value=1.7e+02 Score=19.53 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=33.6
Q ss_pred HhcCCCCCceeHHHHHHHHHH----------hCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 028589 47 MFDKNGDGMITVKELHQALNL----------LGLETDLSELESTIASHVKPGNDGLEFE 95 (207)
Q Consensus 47 ~~D~~~~g~i~~~e~~~~l~~----------l~~~~~~~~~~~l~~~~d~~~~g~i~~~ 95 (207)
.+|...+.+|+.+++..+++. .|..++...+-.|+.+....+...++..
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 578889999999999998873 2455666666666666555554444443
No 230
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.65 E-value=1.9e+02 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=28.2
Q ss_pred CchhHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q 028589 34 PSLNTLRLRRVFDMFDKNGDGMITVKELHQALNL 67 (207)
Q Consensus 34 ~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~ 67 (207)
....-+.++.+-+.+|-|.+|.|+.+|--.+|+.
T Consensus 63 dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred chhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 3445578888999999999999999998888864
No 231
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=30.49 E-value=1.1e+02 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.2
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhc
Q 028589 145 DEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVD 183 (207)
Q Consensus 145 D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d 183 (207)
-.|.+|+++.++|...++.-+ ..+|.+++..+...=|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~--~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAY--KWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHcc--CCCCHHHHHHHHHcCC
Confidence 368999999999999887654 4578888888877644
No 232
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.96 E-value=1.7e+02 Score=18.97 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASH 84 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~ 84 (207)
+.+..+|..+- ..|...++..+++.+| +++.+|..+-...
T Consensus 4 ~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~ 43 (96)
T cd08315 4 ETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANE 43 (96)
T ss_pred hHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHC
Confidence 46777777763 3577888999999999 7888998887664
No 233
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=28.56 E-value=1.1e+02 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q 028589 37 NTLRLRRVFDMFDKNGDGMITVKELHQALNL 67 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~ 67 (207)
++..+.......|..+.+|||.+|+++++-.
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 3456666667778888888999999888754
No 234
>PRK00523 hypothetical protein; Provisional
Probab=28.41 E-value=1.3e+02 Score=18.38 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028589 53 DGMITVKELHQALNLLGLETDLSELESTIASH 84 (207)
Q Consensus 53 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~ 84 (207)
+--|+.+-++.++.+.|..+++..+..+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45788888899999999999999999888765
No 235
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=28.19 E-value=1.7e+02 Score=18.86 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=46.2
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHH---HHHHHHhhhhccccccccccccccccchhhhhhcccH
Q 028589 56 ITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFE---DFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQ 132 (207)
Q Consensus 56 i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~---eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (207)
....+++..++.....++..-+++|++..... +|+-. ++...+..+
T Consensus 4 ~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~---------------------------- 52 (91)
T COG2036 4 VGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEY---------------------------- 52 (91)
T ss_pred chHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHH----------------------------
Confidence 34455666666666666667777777766443 33322 222222222
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q 028589 133 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLG 165 (207)
Q Consensus 133 ~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~ 165 (207)
-......+-......|.-+|..+++...++..|
T Consensus 53 ~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~ 85 (91)
T COG2036 53 LEEIAEDAVELAEHAKRKTVKAEDIKLALKRLG 85 (91)
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhc
Confidence 223344455555667888899999999888876
No 236
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.80 E-value=49 Score=32.84 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHH-HhhcCCCCCceeHHHHHHHHHHHH
Q 028589 129 VLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMI-GSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 129 ~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~-~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
...++.+...+++..||++..|.|...++..+++.+.-+..+....=.+++ ..+-...+|.|++.+-+.++..-.
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 556778899999999999999999999999999988411111111001222 223344677788887777766543
No 237
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=27.57 E-value=70 Score=19.61 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.0
Q ss_pred CCCCcccHHHHHHHHHHc
Q 028589 147 DGDGFISAHELQVVLGKL 164 (207)
Q Consensus 147 d~~G~i~~~e~~~~l~~~ 164 (207)
-..|++..+||..++...
T Consensus 26 ~~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 26 LASGKLRGEEINSLLEAL 43 (75)
T ss_pred HHcCcccHHHHHHHHHHh
Confidence 378999999999998653
No 238
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=27.46 E-value=2.5e+02 Score=20.56 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=28.8
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh
Q 028589 145 DEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 145 D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~ 182 (207)
..+-...+|.++|.+.++....+..++.+.+..++...
T Consensus 143 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 180 (185)
T cd00171 143 NPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSI 180 (185)
T ss_pred CcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 34445688999999988877544678888888888765
No 239
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.40 E-value=2.3e+02 Score=20.04 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=58.6
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh-hhhcccccccccccccc
Q 028589 43 RVFDMFDKNGDGMITVKELHQALNLL--GLETDLSELESTIASHVKPGNDGLEFEDFVSLHE-SLDETFFPLNDLTSTAT 119 (207)
Q Consensus 43 ~~F~~~D~~~~g~i~~~e~~~~l~~l--~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~-~~~~~~~~~~~~~~~~~ 119 (207)
-+|..+.. +|.++..|.......+ .+.++.+.+..++.....-+...+++-.|-..+. .+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L--------------- 96 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL--------------- 96 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc---------------
Confidence 56777666 4667776655444332 4558889999998877666677888888888776 33
Q ss_pred ccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 028589 120 TDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLG 162 (207)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~ 162 (207)
-.....+.+..+++.. .-+|.++..|-.-+.+
T Consensus 97 ---------d~e~R~eli~~mweIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 97 ---------DEEQRLELIGLMWEIA--YADGELDESEDHVIWR 128 (148)
T ss_pred ---------CHHHHHHHHHHHHHHH--HccccccHHHHHHHHH
Confidence 2334445555556555 3456666666554444
No 240
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=27.08 E-value=1.7e+02 Score=18.63 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHHH
Q 028589 149 DGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSV 202 (207)
Q Consensus 149 ~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~ 202 (207)
||.++..|...+-..+.. ...+......+...+........++.+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (106)
T cd07316 13 DGRVSEAEIQAARALMDQ-MGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA 65 (106)
T ss_pred cCCcCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 566666665544443321 11222233333333322222224556666655543
No 241
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=27.05 E-value=92 Score=17.49 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 028589 53 DGMITVKELHQALNLLGLETDLSELESTIASHVKPG 88 (207)
Q Consensus 53 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~ 88 (207)
+|.|+..+|+.++. ++-..+-.++..+|..+
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 78999999999885 66777777888777543
No 242
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.90 E-value=2.2e+02 Score=19.76 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHH
Q 028589 60 ELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSE 139 (207)
Q Consensus 60 e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (207)
.+.+++...+...+.+++...++.-|..|-....=.....++..+-....+.++...- ...+...+..-...+++.
T Consensus 20 ~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~----p~ve~~inNNivLkKLRi 95 (155)
T COG4807 20 DLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPA----PEVERRINNNIVLKKLRI 95 (155)
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCC----CcceeeecchhhHHhHhH
Confidence 4566666666667777777777666655433333223333333332222222222211 112222334455677888
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcC
Q 028589 140 AFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDR 184 (207)
Q Consensus 140 ~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~ 184 (207)
+|..-+ .++..++...+ -+.+.-|+..+|+.-|.
T Consensus 96 Af~lK~---------~Dm~~I~~~~~--f~vS~pElsAlfR~~~h 129 (155)
T COG4807 96 AFSLKT---------DDMLAILTEQQ--FRVSMPELSALFRAPDH 129 (155)
T ss_pred hhhccc---------chHHHHHhccC--cccccHHHHHHHhCCCc
Confidence 886543 46788888887 56788899999987653
No 243
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=26.87 E-value=87 Score=22.90 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=31.3
Q ss_pred cCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 028589 49 DKNGDGMITVKELHQALNLLGLETDLSELESTIASHVK 86 (207)
Q Consensus 49 D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~ 86 (207)
.-+++|++..+++...-+.-+.+.+.+++.++++..|.
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 45789999999998877777777889999999977653
No 244
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=26.56 E-value=2e+02 Score=23.86 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 89 NDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 89 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
+..++++.+.-..... ......+....++...|.+++|+....++.+++...
T Consensus 72 ~~~~~l~k~~~~~~~~------------------------~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATY------------------------EKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred CccchHHHHhhHHhhh------------------------ccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 3468888777665555 334445677788889999999999999999888754
No 245
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=26.33 E-value=1.7e+02 Score=21.34 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCC
Q 028589 151 FISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRN 185 (207)
Q Consensus 151 ~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d 185 (207)
.|+.+-|..+-+.+-.+-++.+++++.-++.++.|
T Consensus 54 NISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid 88 (186)
T PF12983_consen 54 NISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGID 88 (186)
T ss_pred CCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 45555554444443212225567777777777554
No 246
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.20 E-value=47 Score=23.08 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 147 DGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 147 d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
..+|.|.....+.+..... . ..-..|...+..+..|..+|+||+..+-.
T Consensus 52 ~~~~~Il~~g~k~~~~V~~---~---~n~~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 52 TSDGVILIKGVKKVVGVAE---V---FNTTLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred ecCCEEEeeccccccceec---c---cCHHHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 3456666655555543321 1 12344555566778999999999988753
No 247
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=26.16 E-value=1.9e+02 Score=18.80 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=29.3
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 54 GMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 54 g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..|+..+++.+.+.+| +++.+++.+-..+..+ ..+....++..+
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-----~~Eq~~qmL~~W 59 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-----TAEQKVQLLRAW 59 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-----hHHHHHHHHHHH
Confidence 3567788888889888 7888888887655321 245555554444
No 248
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=25.93 E-value=1.4e+02 Score=17.26 Aligned_cols=52 Identities=12% Similarity=0.287 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 028589 35 SLNTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFE 95 (207)
Q Consensus 35 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ 95 (207)
+.....++.+|.... ..+.++..++...|. ++...+..+++++.. .|.|.++
T Consensus 4 ~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~~ 55 (60)
T PF01325_consen 4 ESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEYE 55 (60)
T ss_dssp CHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEEE
T ss_pred cHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEec
Confidence 445578888888876 678999999988876 777888888887753 4555554
No 249
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=25.85 E-value=1.1e+02 Score=24.93 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=51.4
Q ss_pred HHHHhc---CCCCCceeHHHHHHHHHHhCCCCC----------HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccc
Q 028589 44 VFDMFD---KNGDGMITVKELHQALNLLGLETD----------LSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFP 110 (207)
Q Consensus 44 ~F~~~D---~~~~g~i~~~e~~~~l~~l~~~~~----------~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 110 (207)
.|..|| .++.+.++..+...+|..++.+.. ..++..++......+.-.|-...-
T Consensus 127 ~F~vFDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~------------- 193 (342)
T cd07894 127 GFFVFDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDP------------- 193 (342)
T ss_pred EEEEEeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEecc-------------
Confidence 344455 344568889999999988875422 234444444443332211111100
Q ss_pred cccccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q 028589 111 LNDLTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLG 165 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~ 165 (207)
.......+-.+...+...++.+|+.+-.-+-+++...=++..+...-
T Consensus 194 --------~~~~~~~Ky~t~~~~~~di~~~~~~~~d~~~~~~~~Ri~R~~~~~~E 240 (342)
T cd07894 194 --------DMRVPPLKYTTSYSNCSDIRYAFRYPFDLGRDFFFSRIVREGFQSVE 240 (342)
T ss_pred --------ccccCcceeecCCCCcHHHHHHhhhccccCchHHHHHHHHHHHHHHH
Confidence 00011112224445556777777777555666666655555555443
No 250
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=25.52 E-value=1.8e+02 Score=25.06 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh---c----CCCCCc-eeHHHHHHHHHHHHh
Q 028589 140 AFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV---D----RNHDGR-VDFFEFKNMMQSVLV 204 (207)
Q Consensus 140 ~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~---d----~d~~g~-I~~~eF~~~l~~~~~ 204 (207)
+|..|-...++.++...|..+|+.+| ...++-.+..+|..+ | .+..|. ++.+-|...+...++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstG--LrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~ 161 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTG--LRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIV 161 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcC--CCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchh
No 251
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=25.35 E-value=1.9e+02 Score=20.54 Aligned_cols=30 Identities=7% Similarity=0.258 Sum_probs=14.0
Q ss_pred HHHHHHHhhcCCC--CCceeHHHHHHHHHHHH
Q 028589 174 RVQQMIGSVDRNH--DGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 174 e~~~l~~~~d~d~--~g~I~~~eF~~~l~~~~ 203 (207)
+++-.|..+.... ...++-+||-.++..++
T Consensus 88 eLqPYFdKLN~~~SsK~vlt~~E~d~y~eALm 119 (162)
T PF12207_consen 88 ELQPYFDKLNGHKSSKEVLTQEEYDQYIEALM 119 (162)
T ss_dssp HHHHHHHHHTT---HHHHS-HHHHHHHHHHHH
T ss_pred hcchHHHHhcCCcchhhhcCHHHHHHHHHHHh
Confidence 4555566554332 22366666666555443
No 252
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=25.18 E-value=1e+02 Score=19.24 Aligned_cols=23 Identities=30% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q 028589 60 ELHQALNLLGLETDLSELESTIA 82 (207)
Q Consensus 60 e~~~~l~~l~~~~~~~~~~~l~~ 82 (207)
|+..+|+.+|..++.++...+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 78889999999999998886654
No 253
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=24.99 E-value=83 Score=22.71 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh
Q 028589 134 EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~ 182 (207)
...+..+++.+-.++...++..+|...| |.+..+|++++...+..+
T Consensus 84 ~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c---GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 84 NLQLDAALKYLKSNPSEPIDVAEFEKAC---GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHHGG-G--HHHHHHTT---TTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHc---CCCeEECHHHHHHHHHHH
Confidence 4567777777765565678888877665 777889999998877655
No 254
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.96 E-value=1.3e+02 Score=19.18 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=24.8
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 028589 56 ITVKELHQALNLLGLETDLSELESTIASHV 85 (207)
Q Consensus 56 i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d 85 (207)
|+.+++..+.+...+.++++++..+...++
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~ 30 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLD 30 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 567888888888888999999988887763
No 255
>PF14165 YtzH: YtzH-like protein
Probab=24.93 E-value=1.9e+02 Score=18.42 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCCCCcccH-HHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCc
Q 028589 134 EADLSEAFKVFDEDGDGFISA-HELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGR 189 (207)
Q Consensus 134 ~~~l~~~f~~~D~d~~G~i~~-~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~ 189 (207)
...++.+..-...|+.|.++. +.+.++++.+-....++...-..+-..+.....|+
T Consensus 7 l~LLkDIL~~hq~DccgTvsEcEQieRLvksLm~n~~i~~~ik~~L~~Iy~ysq~G~ 63 (87)
T PF14165_consen 7 LTLLKDILSNHQLDCCGTVSECEQIERLVKSLMANPNIDADIKQTLEEIYSYSQNGK 63 (87)
T ss_pred HHHHHHHHHhhhhhccCcHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHccCc
Confidence 456777888888899999875 56778888775556665554444445555555653
No 256
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=24.89 E-value=1.1e+02 Score=15.39 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.3
Q ss_pred CCceeHHHHHHHHHH
Q 028589 187 DGRVDFFEFKNMMQS 201 (207)
Q Consensus 187 ~g~I~~~eF~~~l~~ 201 (207)
.|.|++.+++.+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 355666666655544
No 257
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=24.74 E-value=2.3e+02 Score=19.14 Aligned_cols=57 Identities=7% Similarity=0.260 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028589 37 NTLRLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHES 103 (207)
Q Consensus 37 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 103 (207)
....+.++...+..+-...++.+++...+. ++...+.++|+..- .+++.+|+..+..
T Consensus 7 ~~~~i~~~~~~I~~~~~~~~sl~~lA~~~g-----~S~~~l~r~Fk~~~-----G~s~~~~l~~~Rl 63 (127)
T PRK11511 7 DAITIHSILDWIEDNLESPLSLEKVSERSG-----YSKWHLQRMFKKET-----GHSLGQYIRSRKM 63 (127)
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHC-----cCHHHHHHHHHHHH-----CcCHHHHHHHHHH
Confidence 335666777777776667799888876554 78899999998872 3888888876544
No 258
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=1.7e+02 Score=17.79 Aligned_cols=33 Identities=12% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh
Q 028589 148 GDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 148 ~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~ 182 (207)
.+-.|+.+-++.++...| ...|+..++++++..
T Consensus 35 ~NPpine~~iR~M~~qmG--qKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMG--QKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 456788888888888888 777888888887764
No 259
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=23.92 E-value=32 Score=21.33 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 028589 53 DGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFE 95 (207)
Q Consensus 53 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ 95 (207)
+|.-+.-+|-.+|..+|..+-+..++.+++.+. .+.|.+.++
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E~~ 79 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFMEFE 79 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCceecC
Confidence 455455578888888888888888888888774 345554443
No 260
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=23.78 E-value=1.4e+02 Score=24.70 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHhcCCCCCceeHHHHHHHHHHhCCCC-------CHH----HHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccccccc
Q 028589 45 FDMFDKNGDGMITVKELHQALNLLGLET-------DLS----ELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLND 113 (207)
Q Consensus 45 F~~~D~~~~g~i~~~e~~~~l~~l~~~~-------~~~----~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 113 (207)
|..+|.+....++.++-..++..+|++. +.+ ++..++..++..+.-.|-+.+=...
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~------------- 229 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMR------------- 229 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCcccc-------------
Confidence 3334455678999999999999887653 222 4455556666554333333211100
Q ss_pred ccccccccchhhhhhcccHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 114 LTSTATTDADEGNKKVLSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
....+-.+...+...++.+|+.+-.-+-+++...=++..+...
T Consensus 230 --------~~~~KYtT~~~n~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~ 272 (374)
T TIGR01209 230 --------VKPLKYTTSYANINDIKYAARYFFELGRDFFFSRILREAFQSY 272 (374)
T ss_pred --------CCcceeecCccChHHHHHHHhhccccCchHHHHHHHHHHHHHH
Confidence 1111122445556677777777755566666665555555444
No 261
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=23.69 E-value=62 Score=20.25 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccH
Q 028589 44 VFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEF 94 (207)
Q Consensus 44 ~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~ 94 (207)
+...+..+..+.++..+.+..+. ......+.+++..+.. -|.|+|
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~----~~d~~~~~ri~~FL~~--~G~INf 86 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK----GIDVNKIRRIYDFLER--WGLINF 86 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT----SSSHHHHHHHHHHHHH--TTSSSS
T ss_pred HHHHHHHCCCCcccHHHHHHHcc----ccCHHHHHHHHHHHHH--cCccCC
Confidence 33445667788898888877666 3566777777776653 355554
No 262
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.65 E-value=2.4e+02 Score=19.12 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 028589 135 ADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 201 (207)
Q Consensus 135 ~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~ 201 (207)
....+.|..+...+.++|+..-+..+...+.++-...-+.+..++..+=.+.-=.|...+|+..-..
T Consensus 21 ~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~~~~f~V~~~d~i~~A~~ 87 (130)
T COG5611 21 TKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLNDELFNVELKDFIREAIK 87 (130)
T ss_pred HHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccccceecchHHHHHHHH
Confidence 3577889999999999999999888887775545566677777777542222223556666554333
No 263
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.39 E-value=1.2e+02 Score=17.30 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcC-CCCCceeHHHHHHHHHHHHh
Q 028589 172 IARVQQMIGSVDR-NHDGRVDFFEFKNMMQSVLV 204 (207)
Q Consensus 172 ~~e~~~l~~~~d~-d~~g~I~~~eF~~~l~~~~~ 204 (207)
+.+-+.++..+.. -.+|+|+..||-.-+...+.
T Consensus 5 d~dR~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~ 38 (53)
T PF08044_consen 5 DADRERAVDLLRAAFAEGRLSLDEFDERLDAAYA 38 (53)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 3344444443322 25777888888776665543
No 264
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=23.13 E-value=2.9e+02 Score=19.74 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHhh-cCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhhc
Q 028589 135 ADLSEAFKVF-DEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVD 183 (207)
Q Consensus 135 ~~l~~~f~~~-D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~d 183 (207)
+.+-.+|+.| |.+.+-..+.+++.+-|...| +..++|.+.+.-++
T Consensus 3 dVL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG----F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 3 DVLMYLFENYIDFESDACPDQDDLTRELSAAG----FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 3456677776 444577889999999999998 67788887776553
No 265
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=22.38 E-value=1.5e+02 Score=25.48 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 028589 40 RLRRVFDMFDKNGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESL 104 (207)
Q Consensus 40 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 104 (207)
..-.+|..+-..+...|+..+|..++.++|......+--+.|..-+... ..+.|.+|+..+..-
T Consensus 486 ~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~-~gv~yl~v~~~i~se 549 (612)
T COG5069 486 SNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSV-SGVFYLDVLKGIHSE 549 (612)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcccc-ccchHHHHHHHHhhh
Confidence 3445666666667778999999999999987766555444554332221 147777777765433
No 266
>PRK01844 hypothetical protein; Provisional
Probab=22.29 E-value=2e+02 Score=17.64 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=27.0
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028589 53 DGMITVKELHQALNLLGLETDLSELESTIASH 84 (207)
Q Consensus 53 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~ 84 (207)
+--|+.+-++.++.+.|..+++..+..+++..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44788888899999999999999998888765
No 267
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=21.65 E-value=2.4e+02 Score=19.32 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHHHHhhC
Q 028589 39 LRLRRVFDMFDKNGDGMITVKELHQALNLL-GLETDLSELESTIASHV 85 (207)
Q Consensus 39 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~~~~d 85 (207)
.++.++|..|-. +.|+.+.+..++... |..++...+.-++.++=
T Consensus 37 ~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 37 DKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 567777777765 467888888877765 45777777777776664
No 268
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.62 E-value=2.5e+02 Score=25.30 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=49.4
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccccccccchhhhhhcccHHHH
Q 028589 56 ITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTSTATTDADEGNKKVLSQEEA 135 (207)
Q Consensus 56 i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (207)
++.+|+. +...--++-++.++.++|. ++|.++-+++..++....... . .........+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~ 61 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISAN---------------W-LSLIKKQTEE 61 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhh---------------h-hhhhhhhhhH
Confidence 5555555 2222345566666666665 566666666666554431000 0 0011222234
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 028589 136 DLSEAFKVFDEDGDGFISAHELQVVLGKL 164 (207)
Q Consensus 136 ~l~~~f~~~D~d~~G~i~~~e~~~~l~~~ 164 (207)
....+++..|.+..|.+..+++..++...
T Consensus 62 ~~~~~~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 62 YAALIMEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred HHHHhhhhccccccceeeecchhHHHHhc
Confidence 45567888888888899988888887654
No 269
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.39 E-value=99 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q 028589 132 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLG 165 (207)
Q Consensus 132 ~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~ 165 (207)
...+..+.+|..||.++==.++.+++.++|..-|
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~g 85 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAG 85 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc
Confidence 4458889999999999988999999999998776
No 270
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=21.27 E-value=1.8e+02 Score=20.44 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=36.0
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC-----CcccHHHHHHHHhhh
Q 028589 55 MITVKELHQALNLLGLETDLSELESTIASHVKPGN-----DGLEFEDFVSLHESL 104 (207)
Q Consensus 55 ~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~-----g~i~~~eF~~~~~~~ 104 (207)
..|.++++.+......+++.+++..++..++.-+. -.|+..-...++...
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~ 80 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREV 80 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHH
Confidence 45788999988888888999999999999876432 246655444444443
No 271
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=21.16 E-value=2.7e+02 Score=18.73 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=32.4
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh
Q 028589 139 EAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 139 ~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~ 182 (207)
.+|...-.-++..+|.+++..+|+..| .......+..+++.+
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaG--vevd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVG--ADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcC--CcccHHHHHHHHHHH
Confidence 345555556777899999999999999 666777777777777
No 272
>PF13551 HTH_29: Winged helix-turn helix
Probab=20.91 E-value=2.4e+02 Score=17.99 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=37.9
Q ss_pred CCchhHHHHHHHHHHhcCCCCCceeHHHHHHHH--HHhCCCCCHHHHHHHHHhh
Q 028589 33 CPSLNTLRLRRVFDMFDKNGDGMITVKELHQAL--NLLGLETDLSELESTIASH 84 (207)
Q Consensus 33 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l--~~l~~~~~~~~~~~l~~~~ 84 (207)
.++.+.+.+.+++...-.++.+..+...+...+ ...+..++...+.++++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 456677777777775544444578999999865 4457889999999988764
No 273
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=20.90 E-value=2.4e+02 Score=22.94 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=6.0
Q ss_pred CceeHHHHHHHHHH
Q 028589 54 GMITVKELHQALNL 67 (207)
Q Consensus 54 g~i~~~e~~~~l~~ 67 (207)
|.||++|=...+..
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444444433
No 274
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=2.1e+02 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=7.2
Q ss_pred CCcccHHHHHHHHH
Q 028589 149 DGFISAHELQVVLG 162 (207)
Q Consensus 149 ~G~i~~~e~~~~l~ 162 (207)
+|+||.++....+.
T Consensus 11 DGTITl~Ds~~~it 24 (220)
T COG4359 11 DGTITLNDSNDYIT 24 (220)
T ss_pred CCceEecchhHHHH
Confidence 35555555555444
No 275
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=20.71 E-value=1.7e+02 Score=16.15 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHh
Q 028589 131 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGS 181 (207)
Q Consensus 131 ~~~~~~l~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~ 181 (207)
......|...|.. +...+..++..+...+| ++...|...|..
T Consensus 9 ~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~----l~~~qV~~WF~n 50 (59)
T cd00086 9 PEQLEELEKEFEK-----NPYPSREEREELAKELG----LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence 3445667777766 66889999999998888 566778777754
No 276
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.70 E-value=3.1e+02 Score=19.26 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHH----------HhhcCCCCCceeHHHHHHH
Q 028589 156 ELQVVLGKLGLTEGNEIARVQQMI----------GSVDRNHDGRVDFFEFKNM 198 (207)
Q Consensus 156 e~~~~l~~~~~~~~~t~~e~~~l~----------~~~d~d~~g~I~~~eF~~~ 198 (207)
=+..-++++| ...+++|+..++ .-+-.+..|..+...|.++
T Consensus 94 ll~~e~eklG--i~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 94 LLEQEFEKLG--ITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHHhC--CccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 3455555666 556677776666 1122446788887777655
No 277
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.56 E-value=3.5e+02 Score=19.79 Aligned_cols=37 Identities=5% Similarity=-0.026 Sum_probs=28.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCCcHHHHHHHHHhh
Q 028589 146 EDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSV 182 (207)
Q Consensus 146 ~d~~G~i~~~e~~~~l~~~~~~~~~t~~e~~~l~~~~ 182 (207)
.+-...++.++|.+.++..+.+..++.+.+..++...
T Consensus 146 ~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 182 (187)
T smart00222 146 PNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSI 182 (187)
T ss_pred CccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 3345689999999999888655778888888888765
No 278
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=20.45 E-value=1.2e+02 Score=19.05 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhhcCCCCCceeHHHHHHHHHHHH
Q 028589 171 EIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVL 203 (207)
Q Consensus 171 t~~e~~~l~~~~d~d~~g~I~~~eF~~~l~~~~ 203 (207)
++.|...+--..+.-..|.|+.+.|+..+-.++
T Consensus 17 ~e~E~~tm~yyl~eY~~~~~tVealV~aL~elL 49 (81)
T cd07357 17 SENERATLSYYLDEYRSGHISVDALVMALFELL 49 (81)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 444444444444444555555555555554444
No 279
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=20.16 E-value=2.4e+02 Score=22.68 Aligned_cols=85 Identities=12% Similarity=0.012 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcC--CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccccc
Q 028589 39 LRLRRVFDMFDK--NGDGMITVKELHQALNLLGLETDLSELESTIASHVKPGNDGLEFEDFVSLHESLDETFFPLNDLTS 116 (207)
Q Consensus 39 ~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~ 116 (207)
+.+...|..... ...-.-+.++=.+.....+.......+..-+...|+++|-.+.=..|+.++..-
T Consensus 41 A~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~R------------ 108 (335)
T KOG0113|consen 41 AQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVAR------------ 108 (335)
T ss_pred HHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeee------------
Confidence 444454544332 233455555555555555554444557777888899888877778787776443
Q ss_pred cccccchhhhhhcccHHHHHHHHHHHhhcC
Q 028589 117 TATTDADEGNKKVLSQEEADLSEAFKVFDE 146 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~ 146 (207)
........+|+..|..|-.
T Consensus 109 -----------LnydT~EskLrreF~~YG~ 127 (335)
T KOG0113|consen 109 -----------LNYDTSESKLRREFEKYGP 127 (335)
T ss_pred -----------ccccccHHHHHHHHHhcCc
Confidence 2555667888888888854
Done!