Query 028590
Match_columns 207
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 13:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10457 MENTAL: Cholesterol-c 99.5 1.2E-14 2.7E-19 122.0 3.7 105 63-179 35-140 (171)
2 PF01528 Herpes_glycop: Herpes 55.3 62 0.0014 30.8 7.8 109 78-194 238-357 (374)
3 PF10160 Tmemb_40: Predicted m 38.2 54 0.0012 30.1 4.5 91 83-176 91-186 (261)
4 PF04995 CcmD: Heme exporter p 29.9 51 0.0011 22.1 2.2 21 106-126 3-23 (46)
5 PF15108 TMEM37: Voltage-depen 27.2 41 0.00089 29.5 1.8 18 85-102 18-43 (184)
6 COG3104 PTR2 Dipeptide/tripept 26.8 2.1E+02 0.0045 28.5 6.6 85 65-168 28-113 (498)
7 PF11371 DUF3172: Protein of u 26.0 35 0.00076 28.9 1.1 20 172-195 95-114 (140)
8 PF07172 GRP: Glycine rich pro 22.4 93 0.002 24.1 2.8 20 18-37 4-23 (95)
9 PF13720 Acetyltransf_11: Udp 22.0 95 0.0021 23.1 2.7 19 2-22 27-45 (83)
10 PF04783 DUF630: Protein of un 21.5 38 0.00083 24.7 0.5 9 169-177 16-24 (60)
11 COG3114 CcmD Heme exporter pro 20.1 97 0.0021 23.5 2.4 22 106-127 15-36 (67)
No 1
>PF10457 MENTAL: Cholesterol-capturing domain; InterPro: IPR019498 The following proteins share a conserved region called the MENTAL (MLN64 N-terminal) domain, composed of four transmembrane helices with three short intervening loops [, , ]: Animal MLN64 (metastatic lymph node 64), a late endosomal membrane protein containing a carboxyl-terminal cholesterol binding START domain (IPR002913 from INTERPRO). It is probably involved in intracellular cholesterol transport. Mammalian MENTHO (MLN64 N-terminal domain homologue), a late endosomal protein containing only the MENTAL domain. It is probably involved in cellular cholesterol homoeostasis. The ~170-amino acid MENTAL domain mediates MLN64 and MENTHO homo- and hetero- interactions, targets both proteins to late endosomes and binds cholesterol. The MENTAL domain might serve to maintain cholesterol at the membrane of late endosomes prior to its shuttle to cytoplasmic acceptor(s) through the START domain.
Probab=99.49 E-value=1.2e-14 Score=122.03 Aligned_cols=105 Identities=33% Similarity=0.444 Sum_probs=88.9
Q ss_pred hhhhhhcccCcccccccchhHHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHhhHHHHHHHhhhceecccccccchhh
Q 028590 63 STLSSHFNDYDFRYSLVDIPLISIIRSAVIICVYGLCDGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVADIDRGVY 142 (207)
Q Consensus 63 ~~~~~~~~~Y~FrsSLvDIPlvSi~RS~~IlCvY~~Cdgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~~~~~~~ 142 (207)
..+..|..+|+||+||.||++++++|.++++|+|++| ++.|+.+.++||++|. .|+.+|+. +|. +...++.
T Consensus 35 ~~l~~ei~~Y~~~~SLFDivllA~~Rf~vLil~Ya~~---rl~hw~~iaitT~~S~---afli~Kv~-~~~-~~~s~~~- 105 (171)
T PF10457_consen 35 SALQNEINHYDFKTSLFDIVLLAIFRFLVLILFYALL---RLRHWWPIAITTLVSC---AFLIVKVF-FFD-STSSQNA- 105 (171)
T ss_pred HHHHHHHhheehhhhHHHHHHHHHHHHHHHHHHHHHh---ccCcceEeEeHHhhhh---HHhhheee-EEe-cccCCCC-
Confidence 5699999999999999999999999999999999999 5679999999987654 48889997 664 2222211
Q ss_pred HhhhhHHHHHHHHHHHHhHH-HHhhhhhhhhhhhhccc
Q 028590 143 VRAMEMALFICSLALAVGHI-VVAYRTSCRERKKLLVY 179 (207)
Q Consensus 143 ~~~~~~~LflsS~vfAlgHi-vvAYRtSCraRRKLlv~ 179 (207)
.+-+|+++|+++|-++. ++.||--+|||++.-.+
T Consensus 106 ---~~y~L~I~SfvlaW~E~WfldfrVlPqE~~~~~~~ 140 (171)
T PF10457_consen 106 ---FEYLLIITSFVLAWIETWFLDFRVLPQEREAERRY 140 (171)
T ss_pred ---ceEEehHHHHHHHHHHHHHHhheecchhHHHHHHH
Confidence 23589999999999999 99999999999998655
No 2
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=55.31 E-value=62 Score=30.82 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=61.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhc------CCCCCCCCchhHHHHHHhhHHHHHHHhhhceecccccccchhhHhhhh---H
Q 028590 78 LVDIPLISIIRSAVIICVYGLC------DGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVADIDRGVYVRAME---M 148 (207)
Q Consensus 78 LvDIPlvSi~RS~~IlCvY~~C------dgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~~~~~~~~~~~~---~ 148 (207)
+-|.=...+.=-+++-++|.+= .=-..--|||+|+-..|++..+ =..|=-..| ..++++..-. -
T Consensus 238 ~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv~v~~G~~~G~lia~~~l~~--p~~~Y~~~f-----~~~~~~~~i~~~la 310 (374)
T PF01528_consen 238 VSDMVFGAINVFAVLSIIYLIVIEVVLARYVKVQFGPHLGTLIACGILGL--PAIRYENRF-----VAANLHTGIAINLA 310 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH--HHHHHHHHh-----ccccHHHHHHHHHH
Confidence 3344444444445555555432 1122336999998766665544 334433344 2233333222 5
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhhhhhh--cccccchhhhhhhhcCCC
Q 028590 149 ALFICSLALAVGHIVVAYRTSCRERKKL--LVYKIDIEAVSACKNGFP 194 (207)
Q Consensus 149 ~LflsS~vfAlgHivvAYRtSCraRRKL--lv~rID~Eav~~~K~~~~ 194 (207)
++++..+++++--++=||+-.+|.++|- ++.+.. |.+...|..-+
T Consensus 311 ~i~~i~l~~~vvR~vR~~~~hr~~~~~y~~l~~~~~-~~vk~~~~~~~ 357 (374)
T PF01528_consen 311 VIAIICLIMMVVRLVRAFLYHRRRSTRYYPLVRTVR-KRVKRYIRRRR 357 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhcccchH-HHHHhhccccC
Confidence 8889999999999999999888865554 322222 34554554444
No 3
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=38.19 E-value=54 Score=30.11 Aligned_cols=91 Identities=26% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHhhHHHHHHHhhhceeccccc-c---cchh-hHhhhhHHHHHHHHHH
Q 028590 83 LISIIRSAVIICVYGLCDGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVAD-I---DRGV-YVRAMEMALFICSLAL 157 (207)
Q Consensus 83 lvSi~RS~~IlCvY~~Cdgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~-~---~~~~-~~~~~~~~LflsS~vf 157 (207)
++++==|+++ +.+.+|--=|.-.-.=+-.++++.|+++..+|+.+.|.-.+ . .+.+ ++..|--.-|++|++|
T Consensus 91 lL~lEvSvvv---FgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~~~s~~f 167 (261)
T PF10160_consen 91 LLSLEVSVVV---FGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWFISSLVF 167 (261)
T ss_pred HHHHHHHHHH---HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHHHHHHHH
Confidence 4455445554 44665544344556667788899999999999998887552 1 1111 2223336899999999
Q ss_pred HHhHHHHhhhhhhhhhhhh
Q 028590 158 AVGHIVVAYRTSCRERKKL 176 (207)
Q Consensus 158 AlgHivvAYRtSCraRRKL 176 (207)
++.-..+--=|.||+|=||
T Consensus 168 ~~vY~~I~~L~~~r~r~~L 186 (261)
T PF10160_consen 168 ALVYGFILILTPLRWRDRL 186 (261)
T ss_pred HHHHHHHHHHHhccccccC
Confidence 9987666555888888664
No 4
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=29.86 E-value=51 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.070 Sum_probs=15.0
Q ss_pred CCchhHHHHHHhhHHHHHHHh
Q 028590 106 RGPYLGITTICSVLSLIFVSL 126 (207)
Q Consensus 106 ~gpYLgit~~cs~~S~~~vsv 126 (207)
||||.|.+-..++.-++.+.+
T Consensus 3 y~~yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 3 YGFYVWSSYGVTALVLAGLIV 23 (46)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 899999887776666555543
No 5
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=27.17 E-value=41 Score=29.52 Aligned_cols=18 Identities=44% Similarity=1.042 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHH--------hhcCCC
Q 028590 85 SIIRSAVIICVY--------GLCDGP 102 (207)
Q Consensus 85 Si~RS~~IlCvY--------~~Cdgp 102 (207)
|.+|+++|+|+- ++|||-
T Consensus 18 sfiRtLIilC~alavVLSSisiCDG~ 43 (184)
T PF15108_consen 18 SFIRTLIILCTALAVVLSSISICDGH 43 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhheeecce
Confidence 689999999974 678874
No 6
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=26.76 E-value=2.1e+02 Score=28.55 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=58.4
Q ss_pred hhhhcccCcccccccchhHHHHHHHHHHHHHHh-hcCCCCCCCCchhHHHHHHhhHHHHHHHhhhceecccccccchhhH
Q 028590 65 LSSHFNDYDFRYSLVDIPLISIIRSAVIICVYG-LCDGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVADIDRGVYV 143 (207)
Q Consensus 65 ~~~~~~~Y~FrsSLvDIPlvSi~RS~~IlCvY~-~Cdgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~~~~~~~~ 143 (207)
..|-|+||+|=+ .|+.++.-.|. +-|| |+-..=--++.....+|++|++.=..--. ++ -.
T Consensus 28 ~vE~WERFsyYG----------mraiL~~Yl~~~~~~g--Lg~~~~~A~~l~~~y~slVY~t~i~GG~l--aD-----r~ 88 (498)
T COG3104 28 FVELWERFSYYG----------MRAILILYLYYQLGDG--LGFDETHATGLFSAYGSLVYLTPIIGGWL--AD-----RV 88 (498)
T ss_pred HHHHHHHHhhhh----------hHHHHHHHHHHhcccc--CCcChHhhHHHHHHHHHHHHHHHHHHHHH--HH-----Hh
Confidence 456788888755 57777766554 4444 76676677888899999999875332000 00 12
Q ss_pred hhhhHHHHHHHHHHHHhHHHHhhhh
Q 028590 144 RAMEMALFICSLALAVGHIVVAYRT 168 (207)
Q Consensus 144 ~~~~~~LflsS~vfAlgHivvAYRt 168 (207)
+..+-.+++..++.++||++.++=+
T Consensus 89 LG~~~tI~lGail~~iGh~~L~~~~ 113 (498)
T COG3104 89 LGTRRTIVLGAILMAIGHLVLAISS 113 (498)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccc
Confidence 2334689999999999999999864
No 7
>PF11371 DUF3172: Protein of unknown function (DUF3172); InterPro: IPR021511 This family of proteins has no known function.
Probab=26.00 E-value=35 Score=28.90 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=16.7
Q ss_pred hhhhhcccccchhhhhhhhcCCCC
Q 028590 172 ERKKLLVYKIDIEAVSACKNGFPR 195 (207)
Q Consensus 172 aRRKLlv~rID~Eav~~~K~~~~~ 195 (207)
||||| |+.|.++.||+.|+-
T Consensus 95 e~~~l----vt~~qvr~CK~rMNT 114 (140)
T PF11371_consen 95 EQRKL----VTSEQVRDCKQRMNT 114 (140)
T ss_pred HHcCC----CCHHHHHHHhccccc
Confidence 67776 589999999999984
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.38 E-value=93 Score=24.12 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 028590 18 KTLFFLITMLVSLLLFSAPV 37 (207)
Q Consensus 18 kT~FFlvaM~~SLLl~SaP~ 37 (207)
|++.||.-.+|+||++|.-+
T Consensus 4 K~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 56666666677777766543
No 9
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.99 E-value=95 Score=23.09 Aligned_cols=19 Identities=58% Similarity=0.852 Sum_probs=14.5
Q ss_pred CCcchHHHHHHHHHHHHHHHH
Q 028590 2 GFFSKEEKSKIILRAFKTLFF 22 (207)
Q Consensus 2 g~~~~e~~~~r~~R~~kT~FF 22 (207)
|| ++|++.+ +++..|++|-
T Consensus 27 Gf-s~~~i~~-l~~ayr~l~~ 45 (83)
T PF13720_consen 27 GF-SKEEISA-LRRAYRILFR 45 (83)
T ss_dssp TS--HHHHHH-HHHHHHHHHT
T ss_pred CC-CHHHHHH-HHHHHHHHHh
Confidence 77 7887776 8889998884
No 10
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=21.45 E-value=38 Score=24.73 Aligned_cols=9 Identities=56% Similarity=1.224 Sum_probs=8.2
Q ss_pred hhhhhhhhc
Q 028590 169 SCRERKKLL 177 (207)
Q Consensus 169 SCraRRKLl 177 (207)
.|||||+++
T Consensus 16 ~CkeRkr~~ 24 (60)
T PF04783_consen 16 LCKERKRLM 24 (60)
T ss_pred HHHHHHHHH
Confidence 699999997
No 11
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=20.15 E-value=97 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.5
Q ss_pred CCchhHHHHHHhhHHHHHHHhh
Q 028590 106 RGPYLGITTICSVLSLIFVSLK 127 (207)
Q Consensus 106 ~gpYLgit~~cs~~S~~~vsvK 127 (207)
||+|.|.+..-++.+++.+.+-
T Consensus 15 yafyVWlA~~~tll~l~~l~v~ 36 (67)
T COG3114 15 YAFYVWLAVGMTLLPLAVLVVH 36 (67)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 7999999988888887766543
Done!