Query 028590
Match_columns 207
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 23:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lwu_A Fibrinogen alpha-1 chai 28.6 19 0.00063 28.7 1.1 17 180-197 65-81 (119)
2 1fzc_A Fibrin; blood coagulati 25.2 21 0.00072 27.0 0.8 17 180-197 43-59 (87)
3 2dco_A S1P4 first extracellula 13.9 53 0.0018 20.9 0.7 8 165-172 5-12 (34)
4 2ju0_B Phosphatidylinositol 4- 11.3 1.1E+02 0.0037 21.0 1.6 11 148-158 38-48 (52)
5 1eg3_A Dystrophin; EF-hand lik 8.9 1.4E+02 0.0049 25.4 1.9 25 163-187 58-85 (261)
6 1lv4_A Catestatin, chromograni 8.4 50 0.0017 20.0 -0.8 14 2-15 13-26 (26)
7 1hx1_B BAG-1, BAG-family molec 7.3 94 0.0032 24.4 0.0 16 168-183 82-97 (114)
8 2g3q_A Protein YBL047C; endocy 6.8 2.8E+02 0.0097 16.7 2.1 6 1-7 14-19 (43)
9 4b4a_A TATC, SEC-independent p 6.7 7.1E+02 0.024 20.8 5.2 36 1-37 176-216 (249)
10 1j2j_B ADP-ribosylation factor 5.7 1.8E+02 0.0063 19.4 0.8 15 4-18 4-18 (45)
No 1
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=28.57 E-value=19 Score=28.68 Aligned_cols=17 Identities=47% Similarity=0.868 Sum_probs=14.0
Q ss_pred ccchhhhhhhhcCCCCCC
Q 028590 180 KIDIEAVSACKNGFPRYH 197 (207)
Q Consensus 180 rID~Eav~~~K~~~~~y~ 197 (207)
-||+ .+++||++..+|-
T Consensus 65 DIDI-KiRsCKGSCar~~ 81 (119)
T 1lwu_A 65 DIDV-ALRACKGSCARYL 81 (119)
T ss_dssp HHHH-HHHHGGGTBSSCC
T ss_pred hhhh-hhhhccchHHHHH
Confidence 4666 9999999999774
No 2
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=25.16 E-value=21 Score=27.05 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=13.9
Q ss_pred ccchhhhhhhhcCCCCCC
Q 028590 180 KIDIEAVSACKNGFPRYH 197 (207)
Q Consensus 180 rID~Eav~~~K~~~~~y~ 197 (207)
-||+ .+++||++.++|-
T Consensus 43 DIDI-KiRsCKGSCar~~ 59 (87)
T 1fzc_A 43 DIDI-KIRSCRGSCSRAL 59 (87)
T ss_dssp HHHH-HHHTTTTTBSCCC
T ss_pred hhhh-hhhhccchHHHHH
Confidence 4666 8999999999774
No 3
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=13.89 E-value=53 Score=20.94 Aligned_cols=8 Identities=75% Similarity=1.389 Sum_probs=6.7
Q ss_pred hhhhhhhh
Q 028590 165 AYRTSCRE 172 (207)
Q Consensus 165 AYRtSCra 172 (207)
||||.|..
T Consensus 5 ayrtdce~ 12 (34)
T 2dco_A 5 AYRTDCEE 12 (34)
T ss_dssp GTHHHHHH
T ss_pred hhhcchhh
Confidence 89999974
No 4
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=11.27 E-value=1.1e+02 Score=20.97 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH
Q 028590 148 MALFICSLALA 158 (207)
Q Consensus 148 ~~LflsS~vfA 158 (207)
|++-|+|++++
T Consensus 38 PalVL~s~v~s 48 (52)
T 2ju0_B 38 PALVLSSMIMS 48 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 5
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=8.86 E-value=1.4e+02 Score=25.44 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.3
Q ss_pred HHhhhhhhhhhh---hhcccccchhhhh
Q 028590 163 VVAYRTSCRERK---KLLVYKIDIEAVS 187 (207)
Q Consensus 163 vvAYRtSCraRR---KLlv~rID~Eav~ 187 (207)
.-+|||-|+-|+ ++..+.||++.+.
T Consensus 58 ~~~yRta~klr~lq~~~~l~lv~l~~~~ 85 (261)
T 1eg3_A 58 FSAYRTAMKLRRLQKALCLDLLSLSAAC 85 (261)
T ss_dssp SHHHHHHHHHHHHHHHTTGGGCCHHHHH
T ss_pred hhhHHHHHhhHhhhhhheeceeeHHHHH
Confidence 679999999997 7788999998665
No 6
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=8.39 E-value=50 Score=20.05 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=7.8
Q ss_pred CCcchHHHHHHHHH
Q 028590 2 GFFSKEEKSKIILR 15 (207)
Q Consensus 2 g~~~~e~~~~r~~R 15 (207)
||.+.+++.+|.||
T Consensus 13 ~Fr~Pg~~~rrgw~ 26 (26)
T 1lv4_A 13 GFRGPGPQLXXXXX 26 (26)
T ss_dssp SSCSSCTTC-----
T ss_pred ccCCCccccccccC
Confidence 78888998888886
No 7
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=7.27 E-value=94 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.2
Q ss_pred hhhhhhhhhcccccch
Q 028590 168 TSCRERKKLLVYKIDI 183 (207)
Q Consensus 168 tSCraRRKLlv~rID~ 183 (207)
+.||..||.+|.+|--
T Consensus 82 ~~~R~kRK~lV~~iQ~ 97 (114)
T 1hx1_B 82 KDSRLKRKGLVKKVQA 97 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999888743
No 8
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=6.76 E-value=2.8e+02 Score=16.75 Aligned_cols=6 Identities=67% Similarity=1.342 Sum_probs=3.9
Q ss_pred CCCcchH
Q 028590 1 MGFFSKE 7 (207)
Q Consensus 1 mg~~~~e 7 (207)
||| +++
T Consensus 14 MGF-~~~ 19 (43)
T 2g3q_A 14 MGF-TEE 19 (43)
T ss_dssp TTS-CHH
T ss_pred cCC-CHH
Confidence 898 443
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=6.69 E-value=7.1e+02 Score=20.76 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhh
Q 028590 1 MGFFSKEEKSKIILRAFKTLFFLITML-----VSLLLFSAPV 37 (207)
Q Consensus 1 mg~~~~e~~~~r~~R~~kT~FFlvaM~-----~SLLl~SaP~ 37 (207)
+|..+ -+..++-||.+--..|+++++ .|-++.+.|.
T Consensus 176 ~Giv~-~~~l~~~Rr~~iv~~~v~aAiiTPD~~sq~llaiPl 216 (249)
T 4b4a_A 176 AGVIT-PEQLASFRKYFIVIAFVIGAIIAPDVSTQVLMAIPL 216 (249)
T ss_dssp TTSSC-HHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCcC-HHHHHHHhHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 35544 455677899888888888776 5777777776
No 10
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=5.71 E-value=1.8e+02 Score=19.38 Aligned_cols=15 Identities=53% Similarity=0.806 Sum_probs=10.5
Q ss_pred cchHHHHHHHHHHHH
Q 028590 4 FSKEEKSKIILRAFK 18 (207)
Q Consensus 4 ~~~e~~~~r~~R~~k 18 (207)
+..||||+.+.+.++
T Consensus 4 F~deekSk~L~~Ll~ 18 (45)
T 1j2j_B 4 FEDEEKSKMLARLLK 18 (45)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHH
Confidence 468999987666543
Done!