Query 028590
Match_columns 207
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 23:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028590.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028590hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a1 a.39.1.7 (A:85-209) Dy 21.5 20 0.0014 26.4 1.9 24 164-187 20-46 (125)
2 d2g3qa1 a.5.2.1 (A:1339-1381) 18.3 32 0.0023 21.5 2.1 13 1-14 14-26 (43)
3 d3c7ba1 d.58.1.5 (A:239-304) D 10.7 42 0.003 22.4 1.1 16 179-194 4-19 (66)
4 d1bf5a3 d.93.1.1 (A:569-710) S 9.8 39 0.0028 25.3 0.7 8 1-8 11-18 (142)
5 d1in0a1 d.58.49.1 (A:2-89) Hyp 7.7 56 0.0041 22.6 0.8 17 64-80 21-37 (88)
6 d2dkya1 a.60.1.3 (A:8-85) Dele 7.6 32 0.0023 23.8 -0.6 25 173-197 3-32 (78)
7 d1nekb2 d.15.4.2 (B:1-106) Suc 7.2 25 0.0018 24.5 -1.4 32 163-194 48-80 (106)
8 d1j2jb_ a.7.8.1 (B:) ADP-ribos 6.9 86 0.0062 19.2 1.3 13 5-17 3-15 (41)
9 d2bs2b2 d.15.4.2 (B:1-106) Fum 6.7 28 0.002 24.5 -1.4 31 164-194 51-82 (106)
10 d1oqya1 a.5.2.1 (A:160-200) DN 6.3 1.1E+02 0.0083 17.8 1.6 7 1-8 14-20 (41)
No 1
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.48 E-value=20 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.1
Q ss_pred Hhhhhhhhhhh---hhcccccchhhhh
Q 028590 164 VAYRTSCRERK---KLLVYKIDIEAVS 187 (207)
Q Consensus 164 vAYRtSCraRR---KLlv~rID~Eav~ 187 (207)
-||||.|.=|+ ++..|-||+..+.
T Consensus 20 saYRTA~KLR~vQK~~~l~lv~l~~~~ 46 (125)
T d1eg3a1 20 SAYRTAMKLRRLQKALCLDLLSLSAAC 46 (125)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 58999999885 7788999998665
No 2
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=18.29 E-value=32 Score=21.46 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=7.7
Q ss_pred CCCcchHHHHHHHH
Q 028590 1 MGFFSKEEKSKIIL 14 (207)
Q Consensus 1 mg~~~~e~~~~r~~ 14 (207)
||| ++|+-.+-+.
T Consensus 14 MGF-~e~~A~~AL~ 26 (43)
T d2g3qa1 14 MGF-TEEEAHNALE 26 (43)
T ss_dssp TTS-CHHHHHHHHH
T ss_pred cCC-CHHHHHHHHH
Confidence 999 6665444333
No 3
>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.74 E-value=42 Score=22.37 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.1
Q ss_pred cccchhhhhhhhcCCC
Q 028590 179 YKIDIEAVSACKNGFP 194 (207)
Q Consensus 179 ~rID~Eav~~~K~~~~ 194 (207)
.|||.|+|.++-++|.
T Consensus 4 IrIDQ~~Vk~Y~~g~d 19 (66)
T d3c7ba1 4 IKVDQEAVKEYASWMD 19 (66)
T ss_dssp CEECHHHHHHHHTTSC
T ss_pred ceecHHHHHHHHHhcc
Confidence 4899999999987763
No 4
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.79 E-value=39 Score=25.28 Aligned_cols=8 Identities=75% Similarity=1.178 Sum_probs=3.4
Q ss_pred CCCcchHH
Q 028590 1 MGFFSKEE 8 (207)
Q Consensus 1 mg~~~~e~ 8 (207)
|||++||+
T Consensus 11 ~GFIsK~~ 18 (142)
T d1bf5a3 11 MGFISKER 18 (142)
T ss_dssp CCCCCHHH
T ss_pred EEEecHHH
Confidence 34444443
No 5
>d1in0a1 d.58.49.1 (A:2-89) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=7.74 E-value=56 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=12.6
Q ss_pred hhhhhcccCcccccccc
Q 028590 64 TLSSHFNDYDFRYSLVD 80 (207)
Q Consensus 64 ~~~~~~~~Y~FrsSLvD 80 (207)
+.++--++||||+|=..
T Consensus 21 a~rEi~~RyDFKgs~a~ 37 (88)
T d1in0a1 21 ANRVLSTRYDFRGVEAV 37 (88)
T ss_dssp HHHHHTTBGGGTTCCEE
T ss_pred HHHHHhcccccCCCCce
Confidence 35677789999987543
No 6
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.58 E-value=32 Score=23.81 Aligned_cols=25 Identities=48% Similarity=0.796 Sum_probs=17.8
Q ss_pred hhhh-cccccchhhhhhhh----cCCCCCC
Q 028590 173 RKKL-LVYKIDIEAVSACK----NGFPRYH 197 (207)
Q Consensus 173 RRKL-lv~rID~Eav~~~K----~~~~~y~ 197 (207)
|||. ...-..+||..+|+ -|||.|.
T Consensus 3 r~k~~~~~~~EiEA~eAC~WLraaGFpqYA 32 (78)
T d2dkya1 3 RKKPDTMILTQIEAKEACDWLRATGFPQYA 32 (78)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHTCTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 5555 23345688999997 4999886
No 7
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.15 E-value=25 Score=24.53 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHhhhhhhhhhh-hhcccccchhhhhhhhcCCC
Q 028590 163 VVAYRTSCRERK-KLLVYKIDIEAVSACKNGFP 194 (207)
Q Consensus 163 vvAYRtSCraRR-KLlv~rID~Eav~~~K~~~~ 194 (207)
-++||.|||+.= -..--+||=...++|+--..
T Consensus 48 sLsfr~sCr~giCGsCam~ING~~~LAC~t~v~ 80 (106)
T d1nekb2 48 SLSFRRSCREGVCGSDGLNMNGKNGLACITPIS 80 (106)
T ss_dssp TCCCCCCSSSSCSCTTEEEETTEEEETTSCBTT
T ss_pred CEEEEcCCCCCCCCcceEEEcCccccchheehh
Confidence 589999998742 22445677777777775443
No 8
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.93 E-value=86 Score=19.23 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHH
Q 028590 5 SKEEKSKIILRAF 17 (207)
Q Consensus 5 ~~e~~~~r~~R~~ 17 (207)
..||||+.+-|.+
T Consensus 3 ~dEeksklL~~LL 15 (41)
T d1j2jb_ 3 EDEEKSKMLARLL 15 (41)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 6899998665543
No 9
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Probab=6.75 E-value=28 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=23.6
Q ss_pred Hhhhhhhhhhh-hhcccccchhhhhhhhcCCC
Q 028590 164 VAYRTSCRERK-KLLVYKIDIEAVSACKNGFP 194 (207)
Q Consensus 164 vAYRtSCraRR-KLlv~rID~Eav~~~K~~~~ 194 (207)
+|||.|||+-= -..--+||=+..++|+--..
T Consensus 51 l~fr~sCr~giCGsCam~ING~~~lAC~t~v~ 82 (106)
T d2bs2b2 51 LNFDFVCRAGICGSCGMMINGRPSLACRTLTK 82 (106)
T ss_dssp CCCCCSSSSSSSCTTEEEETTEEEEGGGCBGG
T ss_pred EEEEeCcCCCCCCcceEEECCccccceeeeee
Confidence 79999999865 34667788888888876443
No 10
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.27 E-value=1.1e+02 Score=17.82 Aligned_cols=7 Identities=43% Similarity=1.089 Sum_probs=4.6
Q ss_pred CCCcchHH
Q 028590 1 MGFFSKEE 8 (207)
Q Consensus 1 mg~~~~e~ 8 (207)
||| ++|+
T Consensus 14 MGF-~~~~ 20 (41)
T d1oqya1 14 MGY-ERER 20 (41)
T ss_dssp TTC-CSHH
T ss_pred cCC-CHHH
Confidence 898 5444
Done!