Query 028591
Match_columns 207
No_of_seqs 173 out of 1270
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 23:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.8E-07 6.2E-12 69.5 6.6 71 64-140 33-104 (137)
2 3b5d_A Multidrug transporter E 98.4 5.3E-07 1.8E-11 64.4 7.3 70 64-139 33-103 (110)
3 1q90_R Cytochrome B6-F complex 12.7 2.3E+02 0.0079 16.4 3.5 34 54-87 8-41 (49)
4 3mp7_B Preprotein translocase 8.7 83 0.0028 19.2 0.2 25 111-135 23-47 (61)
5 3arc_L Photosystem II reaction 5.6 4.4E+02 0.015 14.2 3.1 20 163-182 16-35 (37)
6 2hac_A T-cell surface glycopro 5.2 4.1E+02 0.014 14.0 1.8 14 102-115 17-30 (33)
7 2wwb_B SEC61gamma, protein tra 4.9 1.1E+02 0.0039 19.1 -0.6 24 111-134 26-49 (68)
8 1rh5_B Preprotein translocase 4.8 1.2E+02 0.0042 19.3 -0.5 24 111-134 27-50 (74)
9 2l9j_A M2-1, matrix protein 2- 4.1 4.5E+02 0.015 18.0 1.8 13 174-186 37-49 (121)
10 2ww9_B Protein transport prote 4.0 1.6E+02 0.0054 19.0 -0.4 25 111-135 40-64 (80)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.52 E-value=1.8e-07 Score=69.45 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHHh-hccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhh
Q 028591 64 FLLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFY 140 (207)
Q Consensus 64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il-~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~ 140 (207)
.++++++..+.+.+++.++++.+++.+..+ .++.|++++++++++++|++++. +++|+++.++|++++...
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 467888889999999999999999999888 89999999999999999999876 499999999999998743
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.45 E-value=5.3e-07 Score=64.42 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHHh-hccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591 64 FLLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (207)
Q Consensus 64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il-~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~ 139 (207)
.+.++++..+++.++..++++.+.+.+..+ ..+.|+++.++++++++|+++.. +++|+.+.++|++.+..
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 357777888899999999999999999877 79999999999999999999765 69999999999998863
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=12.71 E-value=2.3e+02 Score=16.37 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 028591 54 KLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHP 87 (207)
Q Consensus 54 ~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a 87 (207)
..+||++...+.+|..+....-.++=+.--+++|
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP 41 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAFFVPP 41 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCC
Confidence 4567888777777776654443333333333333
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.69 E-value=83 Score=19.22 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=15.3
Q ss_pred ccccccCCCCchhhhhHHHHHHhHH
Q 028591 111 EIVDVRSPRGIAKILGTLASLVGVM 135 (207)
Q Consensus 111 e~~~~~~~~~~~~~~G~~l~~~Gv~ 135 (207)
+|+++++.....+..|+.+.++|.+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655444556667777777753
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.62 E-value=4.4e+02 Score=14.15 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 028591 163 NWLKGSILTVASCILWSSFY 182 (207)
Q Consensus 163 ~~~~G~ll~l~aa~~~a~y~ 182 (207)
+.-+|.++.+.-++.++-|.
T Consensus 16 SLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhc
Confidence 34589999999999998885
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.21 E-value=4.1e+02 Score=14.00 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=8.4
Q ss_pred HHHHHHhhhccccc
Q 028591 102 FIIAVVFRLEIVDV 115 (207)
Q Consensus 102 ~ila~~~~~e~~~~ 115 (207)
+++..++.+||++.
T Consensus 17 ii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 17 VILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhc
Confidence 34555667777653
No 7
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=4.94 E-value=1.1e+02 Score=19.07 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=15.0
Q ss_pred ccccccCCCCchhhhhHHHHHHhH
Q 028591 111 EIVDVRSPRGIAKILGTLASLVGV 134 (207)
Q Consensus 111 e~~~~~~~~~~~~~~G~~l~~~Gv 134 (207)
.|+++++.....+..|+.++++|.
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~ 49 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGF 49 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455655544455666777777775
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.83 E-value=1.2e+02 Score=19.26 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=13.0
Q ss_pred ccccccCCCCchhhhhHHHHHHhH
Q 028591 111 EIVDVRSPRGIAKILGTLASLVGV 134 (207)
Q Consensus 111 e~~~~~~~~~~~~~~G~~l~~~Gv 134 (207)
+|+++++.....+..|+.++++|.
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~ 50 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGI 50 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444544433445556666666664
No 9
>2l9j_A M2-1, matrix protein 2-1; processivity, transcription CO-factor, viral protein, RNA BI protein; NMR {Human respiratory syncytial virus}
Probab=4.09 E-value=4.5e+02 Score=17.98 Aligned_cols=13 Identities=0% Similarity=-0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh
Q 028591 174 SCILWSSFYIMQV 186 (207)
Q Consensus 174 aa~~~a~y~v~~k 186 (207)
++-|+|+|.++++
T Consensus 37 ~~AC~sl~~il~~ 49 (121)
T 2l9j_A 37 QSACVAMSKLLTE 49 (121)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=4.04 E-value=1.6e+02 Score=19.04 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=0.0
Q ss_pred ccccccCCCCchhhhhHHHHHHhHH
Q 028591 111 EIVDVRSPRGIAKILGTLASLVGVM 135 (207)
Q Consensus 111 e~~~~~~~~~~~~~~G~~l~~~Gv~ 135 (207)
.|+++++.....+..|+.++++|.+
T Consensus 40 ~KPdr~Ef~~iak~t~iG~~imG~I 64 (80)
T 2ww9_B 40 KKPDLKEYTKIVKAVGIGFIAVGII 64 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Done!