BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028592
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 72 RVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSG-------KGVAHICEICGRSLLDP 124
R+ ++D+ Q + + S+ V+ + PR G K VAHI I + ++P
Sbjct: 2087 RIASCLEVLDLFLSQPHPVLSSFVLAEKKAAAPRDGSSQKDLVKAVAHILGIRDVASINP 2146
Query: 125 -FRFCSLGC-KLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIY 182
LG L G++ LE +++ + +E RQ+S RK +EL + D
Sbjct: 2147 DSTLVDLGLDSLMGVE----VRQILEREHDLVLSMRE--VRQLSLRKLQELSSKTSTDAD 2200
Query: 183 P--PTTHK 188
P PT+H+
Sbjct: 2201 PATPTSHE 2208
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 289 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 344
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 345 A-GRKLA 350
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 129 SLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPP 184
+L C++ G+ GNA+ + +E M++ E + + RK ++ + Q ++Y P
Sbjct: 206 NLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLP 261
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 289 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 344
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 345 A-GRKLA 350
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 289 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 344
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 345 A-GRKLA 350
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 274 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 329
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 330 A-GRKLA 335
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 272 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 327
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 328 A-GRKLA 333
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 272 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 327
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 328 A-GRKLA 333
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 129 SLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPP 184
+L C++ G+ GNA+ + +E M++ E + + RK ++ + Q ++Y P
Sbjct: 238 NLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLP 293
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 155 MERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKG 198
+E++E +RQ+ +R++ + DS + PT P ARRR+G
Sbjct: 57 LEKEE--NRQILARQKSNSQSDSHDEEVSPTPPNPVVKARRRRG 98
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 288 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 343
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 344 A-GRKLA 349
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 289 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 344
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 345 A-GRKLA 350
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 290 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 345
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 346 A-GRKLA 351
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 129 SLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPP 184
+L C++ G+ GNA+ + +E M++ E + + RK ++ + Q ++Y P
Sbjct: 220 NLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLP 275
>pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|A Chain A, Rnap At 3.2ang
pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 880
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 147 LEIKNEAFMERKEGISRQVSSRKQEELREDSQHDI----YPPTTHKP 189
LE + ERKEG+++ S +E L + + D+ Y PTT +P
Sbjct: 158 LEKPYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRP 204
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 73 VGEIQNIMDIS----GVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFC 128
+G + N D+S G+QT + + ++E Q + KG+ + ++CG++LL P
Sbjct: 289 IGRVPNTKDLSLNKLGIQT---DDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIA 344
Query: 129 SLGCKLA 135
+ G KLA
Sbjct: 345 A-GRKLA 350
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 129 SLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPP 184
+L C++ G+ GNA+ + +E M++ E + + RK ++ + Q ++Y P
Sbjct: 213 NLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLP 268
>pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 880
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 147 LEIKNEAFMERKEGISRQVSSRKQEELREDSQHDI----YPPTTHKP 189
LE + ERKEG+++ S +E L + D+ Y PTT +P
Sbjct: 158 LEKPYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRP 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,945,702
Number of Sequences: 62578
Number of extensions: 217914
Number of successful extensions: 524
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 22
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)