BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028592
         (207 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 35/133 (26%)

Query: 80  MDISGVQTYVINSARVVFLNER---PQPRSGKGVAHICEICGRSL--LDPFRFCSLGCKL 134
           MDISG+  Y IN   +V++N+R      RS   V H C+IC   +       FCS+ CK 
Sbjct: 5   MDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSMECKF 64

Query: 135 AGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQH--DIYPPTTHKPPSS 192
                                       R V   + +EL E+S    +I           
Sbjct: 65  ----------------------------RSVLGSQLDELMENSSEVTEISEEIDEPVMKK 96

Query: 193 ARRRKGVPHRAPF 205
             RRKG PHRAPF
Sbjct: 97  RHRRKGSPHRAPF 109


>sp|O14063|IMA1_SCHPO Importin subunit alpha-1 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=cut15 PE=1 SV=1
          Length = 542

 Score = 32.0 bits (71), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCR---------THGDAARSECNMYCLDCNDQAFCFYCRS 51
           +EA+++PP +  +L TA F + +         T G A R +   Y ++    A    C  
Sbjct: 371 IEANIIPPLIH-LLTTADFKIQKEACWAISNATSGGARRPDQIRYLVE--QGAIKPLCNL 427

Query: 52  SKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVI 90
              +D+++IQ+      +++RVGE+    +   +  Y +
Sbjct: 428 LACQDNKIIQVALDGIENILRVGELDRANNPDKINLYAV 466


>sp|O94374|IMA2_SCHPO Importin subunit alpha-2 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=imp1 PE=1 SV=1
          Length = 539

 Score = 31.6 bits (70), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 49  CRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVI 90
           C      D+++IQ+   +  ++++VGE+   MD+  +  Y +
Sbjct: 425 CDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAV 466


>sp|Q03096|EST3_YEAST Telomere replication protein EST3 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=EST3 PE=1 SV=2
          Length = 181

 Score = 30.8 bits (68), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 173 LREDSQHDIYPPTTHKPPSSARRRKGVPHRAP 204
           + ++S+HD Y P+ H  PS  ++   +PH +P
Sbjct: 26  IEDNSEHDQYHPSGHVIPSLTKQDLALPHMSP 57


>sp|Q2SQL8|THIC_HAHCH Phosphomethylpyrimidine synthase OS=Hahella chejuensis (strain KCTC
           2396) GN=thiC PE=3 SV=1
          Length = 638

 Score = 30.8 bits (68), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query: 104 PRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISR 163
           P+ G  +AH C +CG       +FCS+  K+    RD +A      K EA   + EG S+
Sbjct: 568 PKEGHKLAHFCSMCGP------KFCSM--KITQDVRDYSA------KLEAEKAQAEGASQ 613

Query: 164 QVSSRKQEELRE 175
           Q + +  +E+ +
Sbjct: 614 QEAEQGMQEMSQ 625


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,441,810
Number of Sequences: 539616
Number of extensions: 2974436
Number of successful extensions: 8479
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8473
Number of HSP's gapped (non-prelim): 23
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)