Query 028592
Match_columns 207
No_of_seqs 151 out of 195
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvr_A Transcription intermedi 95.7 0.0022 7.6E-08 41.6 0.3 38 21-62 8-45 (50)
2 1fre_A Nuclear factor XNF7; zi 95.3 0.0095 3.3E-07 37.2 2.4 36 21-61 5-41 (42)
3 2d8u_A Ubiquitin ligase TRIM63 95.3 0.0046 1.6E-07 41.8 0.9 37 21-61 10-47 (64)
4 3ddt_A E3 ubiquitin-protein li 95.1 0.0051 1.7E-07 39.8 0.7 39 20-62 7-46 (48)
5 2did_A Tripartite motif protei 94.7 0.011 3.8E-07 38.8 1.5 37 21-62 10-47 (53)
6 2yrg_A Tripartite motif-contai 93.4 0.028 9.5E-07 38.0 1.5 37 21-62 16-53 (59)
7 2csv_A Tripartite motif protei 93.3 0.019 6.7E-07 39.8 0.5 37 21-62 20-56 (72)
8 2dja_A Midline-2; tripartite m 93.2 0.015 5E-07 41.3 -0.1 38 21-62 20-58 (84)
9 2jun_A Midline-1; B-BOX, TRIM, 91.4 0.033 1.1E-06 40.4 -0.2 37 21-61 61-98 (101)
10 2egm_A Tripartite motif-contai 90.3 0.018 6E-07 38.9 -2.4 36 21-61 20-56 (57)
11 2w0t_A Lethal(3)malignant brai 90.0 0.069 2.4E-06 35.3 0.4 26 108-133 3-34 (43)
12 2das_A Zinc finger MYM-type pr 81.7 0.82 2.8E-05 32.2 2.3 30 104-133 13-52 (62)
13 2l8e_A Polyhomeotic-like prote 70.6 0.58 2E-05 31.4 -0.9 24 111-134 18-46 (49)
14 1lv3_A Hypothetical protein YA 63.6 0.63 2.2E-05 33.3 -1.9 29 111-139 9-42 (68)
15 3nis_A E3 ubiquitin-protein li 60.2 5 0.00017 29.3 2.4 32 29-60 16-51 (82)
16 3ny3_A E3 ubiquitin-protein li 54.8 4.4 0.00015 29.0 1.2 32 29-60 12-47 (75)
17 2hiy_A Hypothetical protein; C 37.4 12 0.00042 30.4 1.5 32 69-101 20-54 (183)
18 2yqp_A Probable ATP-dependent 29.2 22 0.00074 24.8 1.4 27 111-137 19-50 (60)
19 2yqq_A Zinc finger HIT domain- 26.4 30 0.001 23.5 1.7 22 111-133 12-39 (56)
20 2dip_A Zinc finger SWIM domain 24.6 14 0.00047 27.6 -0.4 30 35-64 47-77 (98)
21 2nrr_A Uvrabc system protein C 24.5 13 0.00044 30.3 -0.5 26 79-104 22-47 (159)
22 2fc7_A ZZZ3 protein; structure 23.7 37 0.0013 24.3 1.9 31 35-65 37-76 (82)
No 1
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.65 E-value=0.0022 Score=41.64 Aligned_cols=38 Identities=29% Similarity=0.666 Sum_probs=30.0
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 62 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI 62 (207)
.|..|... .-++||.+|.. .+|..|....|++|+++-|
T Consensus 8 ~C~~H~~e---~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKHE---PLVLFCESCDT-LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTTC---BCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred cCcCCCCC---CEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence 48888542 37899999985 8999997778999977643
No 2
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=95.29 E-value=0.0095 Score=37.22 Aligned_cols=36 Identities=31% Similarity=0.742 Sum_probs=28.7
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 61 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 61 (207)
.|..|.. .-.+||.+|.. .+|..|.. ..|++|+++.
T Consensus 5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence 4888852 47799999985 89999965 6899998753
No 3
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.28 E-value=0.0046 Score=41.82 Aligned_cols=37 Identities=35% Similarity=0.852 Sum_probs=29.1
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 61 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 61 (207)
.|..|... .-++||.+|.. .+|..|.. ..|++|+++-
T Consensus 10 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 10 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEEC
T ss_pred cCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCeeC
Confidence 58888542 37899999985 99999954 5899987664
No 4
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.13 E-value=0.0051 Score=39.75 Aligned_cols=39 Identities=33% Similarity=0.818 Sum_probs=30.3
Q ss_pred hhccccCCCCCCCCceecccCCCccccCccc-CCCCCCCceEEE
Q 028592 20 TVCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQI 62 (207)
Q Consensus 20 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI 62 (207)
..|..|... .-++||.+|.. .+|..|. ...|++|+++.|
T Consensus 7 ~~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 7 PMCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp CBCSSSTTS---BCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred CcCCCCCCc---cccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence 468888632 36799999984 9999995 468999988764
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=94.68 E-value=0.011 Score=38.77 Aligned_cols=37 Identities=24% Similarity=0.781 Sum_probs=29.8
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI 62 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 62 (207)
.|..|. ..-.+||.+|.. .+|..|.. ..|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 588885 247799999985 89999965 78999987754
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.39 E-value=0.028 Score=38.04 Aligned_cols=37 Identities=22% Similarity=0.760 Sum_probs=30.1
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI 62 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 62 (207)
.|..|.. .-.+||.+|.. .+|..|.. ..|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 5998863 47799999985 89999965 78999988765
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=93.26 E-value=0.019 Score=39.85 Aligned_cols=37 Identities=24% Similarity=0.784 Sum_probs=29.7
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 62 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI 62 (207)
.|..|. ..-++||.+|.. .+|..|....|++|+++-|
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence 699884 247799999985 8999997688999877653
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.25 E-value=0.015 Score=41.30 Aligned_cols=38 Identities=34% Similarity=0.871 Sum_probs=30.0
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI 62 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI 62 (207)
.|..|... .-++||.+|.. .+|..|.. ..|++|+++-|
T Consensus 20 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 20 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred cCcCcCCc---cccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence 59988532 37899999984 89999965 78999977654
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.35 E-value=0.033 Score=40.38 Aligned_cols=37 Identities=38% Similarity=0.898 Sum_probs=29.3
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 61 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 61 (207)
.|..|... .-++||.+|.. .+|..|.. ..|++|+++-
T Consensus 61 ~C~~H~~e---~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 61 MCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCSSCSSS---CCCEEETTTTE-EECHHHHHHTTTSSSCBCC
T ss_pred cCcCcCCC---cceEECCCCCC-ccchhcCCCCCcCCCCeec
Confidence 58888542 37899999984 89999965 7899998754
No 10
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.34 E-value=0.018 Score=38.86 Aligned_cols=36 Identities=31% Similarity=0.789 Sum_probs=28.6
Q ss_pred hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592 21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ 61 (207)
Q Consensus 21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ 61 (207)
.|..|. ....+||.+|.. .+|..|.. ..|++|+++.
T Consensus 20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 499884 247799999984 89999964 5799998764
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=89.98 E-value=0.069 Score=35.26 Aligned_cols=26 Identities=35% Similarity=0.867 Sum_probs=19.0
Q ss_pred CCCcccccccccc-cCCC-----Ceeeeecce
Q 028592 108 KGVAHICEICGRS-LLDP-----FRFCSLGCK 133 (207)
Q Consensus 108 kg~~~~C~~C~R~-L~d~-----~rFCSl~CK 133 (207)
++....||.|++. +... -||||++|-
T Consensus 3 ~~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 3 GSEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp SCCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CCceehhhhhcCcchhhhhccCCcceechhhh
Confidence 3446789999984 4443 489999994
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=81.66 E-value=0.82 Score=32.23 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCCCCCCcccccccccccCC----------CCeeeeecce
Q 028592 104 PRSGKGVAHICEICGRSLLD----------PFRFCSLGCK 133 (207)
Q Consensus 104 ~r~~kg~~~~C~~C~R~L~d----------~~rFCSl~CK 133 (207)
.++.+....+|+.|.+.|+. +-.|||..|-
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence 55667788899999999973 3469999995
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=70.63 E-value=0.58 Score=31.36 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=19.4
Q ss_pred cccccccccccCC-----CCeeeeeccee
Q 028592 111 AHICEICGRSLLD-----PFRFCSLGCKL 134 (207)
Q Consensus 111 ~~~C~~C~R~L~d-----~~rFCSl~CKv 134 (207)
..+|+.|++.+.. +-+|||.+|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 4579999999874 35899999973
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=63.58 E-value=0.63 Score=33.29 Aligned_cols=29 Identities=34% Similarity=0.945 Sum_probs=22.7
Q ss_pred cccccccccccC----CCC-eeeeecceeceeec
Q 028592 111 AHICEICGRSLL----DPF-RFCSLGCKLAGIKR 139 (207)
Q Consensus 111 ~~~C~~C~R~L~----d~~-rFCSl~CKv~~~~~ 139 (207)
...|-+|++... -+| .|||-.||...+.+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~ 42 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 42 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHH
Confidence 568999999985 244 69999999866654
No 15
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=60.25 E-value=5 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=23.6
Q ss_pred CCCCCceecccCCCc---cccCccc-CCCCCCCceE
Q 028592 29 ARSECNMYCLDCNDQ---AFCFYCR-SSKHKDHQVI 60 (207)
Q Consensus 29 ~knE~N~FCldC~~~---~~C~~C~-~~~H~~Hrvl 60 (207)
.++|--..|+||..+ +||..|. ...|.+|++.
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~ 51 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVC 51 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEE
Confidence 456788899999876 5777773 3469998654
No 16
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=54.84 E-value=4.4 Score=29.04 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=23.8
Q ss_pred CCCCCceecccCCCc---cccCccc-CCCCCCCceE
Q 028592 29 ARSECNMYCLDCNDQ---AFCFYCR-SSKHKDHQVI 60 (207)
Q Consensus 29 ~knE~N~FCldC~~~---~~C~~C~-~~~H~~Hrvl 60 (207)
.++|--..|++|..+ ++|..|. ...|.+|++.
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~ 47 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYR 47 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEE
Confidence 457888999999866 5667773 4579998754
No 17
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=37.37 E-value=12 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=24.3
Q ss_pred ceeeechhhhh---hcccceeEEEECCcEEEEeecC
Q 028592 69 DVVRVGEIQNI---MDISGVQTYVINSARVVFLNER 101 (207)
Q Consensus 69 dVVrv~dIqkl---~DiS~IQtYvINsakVVfLn~R 101 (207)
+-|...|+..+ +-..+|+|| |||.-|||--..
T Consensus 20 nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 20 NKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 44556777665 678999999 799999997543
No 18
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.24 E-value=22 Score=24.80 Aligned_cols=27 Identities=41% Similarity=0.764 Sum_probs=19.9
Q ss_pred ccccccccccc---CC--CCeeeeecceecee
Q 028592 111 AHICEICGRSL---LD--PFRFCSLGCKLAGI 137 (207)
Q Consensus 111 ~~~C~~C~R~L---~d--~~rFCSl~CKv~~~ 137 (207)
.+.|-+|||-= -| .-+-|||.||-..+
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l 50 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHL 50 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHH
Confidence 45599999854 24 47899999996554
No 19
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.38 E-value=30 Score=23.52 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=16.1
Q ss_pred cccccccccccCC------CCeeeeecce
Q 028592 111 AHICEICGRSLLD------PFRFCSLGCK 133 (207)
Q Consensus 111 ~~~C~~C~R~L~d------~~rFCSl~CK 133 (207)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 456899988 321 4689999996
No 20
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.55 E-value=14 Score=27.59 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=21.5
Q ss_pred eecccCCCccccCccc-CCCCCCCceEEEEe
Q 028592 35 MYCLDCNDQAFCFYCR-SSKHKDHQVIQIRR 64 (207)
Q Consensus 35 ~FCldC~~~~~C~~C~-~~~H~~HrvlQIRR 64 (207)
.-|+.|..--||..|. ...|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 4688887667999993 34577888777644
No 21
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=24.54 E-value=13 Score=30.27 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=20.7
Q ss_pred hhcccceeEEEECCcEEEEeecCCCC
Q 028592 79 IMDISGVQTYVINSARVVFLNERPQP 104 (207)
Q Consensus 79 l~DiS~IQtYvINsakVVfLn~RPq~ 104 (207)
.||+|.||.--.-++-|||-+.+|..
T Consensus 22 ~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 22 GIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEECC---CCEEEEEEEETTEECG
T ss_pred EEECCccCCccceEEEEEEeCCccCh
Confidence 58999999988889999999998875
No 22
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.71 E-value=37 Score=24.28 Aligned_cols=31 Identities=42% Similarity=0.756 Sum_probs=21.9
Q ss_pred eecccCCC---ccccCcccC-----CCC-CCCceEEEEec
Q 028592 35 MYCLDCND---QAFCFYCRS-----SKH-KDHQVIQIRRS 65 (207)
Q Consensus 35 ~FCldC~~---~~~C~~C~~-----~~H-~~HrvlQIRRs 65 (207)
+-|++|.. --||..|.. ..| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 56889976 569999942 245 67888877553
Done!