Query 028593
Match_columns 207
No_of_seqs 110 out of 517
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 23:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028593.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028593hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 30.4 36 0.0026 19.9 4.3 31 87-117 26-56 (69)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 16.2 70 0.0051 16.7 2.9 20 147-166 15-34 (37)
3 d1h2vc1 a.118.1.14 (C:29-290) 15.6 2.1E+02 0.015 21.1 7.9 30 152-181 142-175 (262)
4 d2je6a2 d.101.1.1 (A:192-275) 15.4 1.1E+02 0.0077 18.3 4.3 24 167-190 57-80 (84)
5 d1q90l_ f.23.24.1 (L:) PetL su 14.4 79 0.0058 15.7 4.0 22 55-76 2-23 (32)
6 d1pq4a_ c.92.2.2 (A:) Periplas 14.0 2.3E+02 0.017 20.8 7.3 56 142-198 135-190 (289)
7 d2nn6e2 d.101.1.1 (E:192-285) 14.0 89 0.0065 19.3 3.7 28 167-195 58-85 (94)
8 d1zkea1 a.30.6.1 (A:1-79) Hypo 11.8 96 0.007 18.9 3.1 25 165-190 50-74 (79)
9 d2gaua1 a.4.5.4 (A:152-232) Tr 11.2 1.4E+02 0.0098 17.4 3.8 30 88-117 27-56 (81)
10 d1w53a_ a.186.1.2 (A:) Phospho 10.8 1.2E+02 0.0084 19.0 3.3 34 161-194 6-39 (84)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.41 E-value=36 Score=19.94 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=27.6
Q ss_pred CceeeCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028593 87 PDLEISDQSVVKAADEIQVWVNHALSIARDI 117 (207)
Q Consensus 87 ~~~~isee~v~~~~~~v~~~in~~l~~~~~i 117 (207)
-.+.++++.+-+++..-++.+|..+..+++-
T Consensus 26 i~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 26 MQIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp CEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3678999999999999999999999998864
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.17 E-value=70 Score=16.69 Aligned_cols=20 Identities=35% Similarity=0.813 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 028593 147 TLVYIGVLLSLSVPVLYEKF 166 (207)
Q Consensus 147 tLl~i~~~~~FtvP~lY~~~ 166 (207)
|-+|.|.+..|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665544
No 3
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.58 E-value=2.1e+02 Score=21.06 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=20.6
Q ss_pred HHHHHHHHHH----HHHhchhHHHHHHHHHHHHH
Q 028593 152 GVLLSLSVPV----LYEKFQDHIDEKLCKIQRVI 181 (207)
Q Consensus 152 ~~~~~FtvP~----lY~~~q~~ID~~v~~~~~~~ 181 (207)
+.+.+-++|- +|+++.++.|+.++.+...+
T Consensus 142 ~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 142 VYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4455666663 57788888888887766654
No 4
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.38 E-value=1.1e+02 Score=18.26 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 028593 167 QDHIDEKLCKIQRVIQMQYRKIDE 190 (207)
Q Consensus 167 q~~ID~~v~~~~~~~~~~~~~~~~ 190 (207)
.++|++.++.+.+..++..+.+++
T Consensus 57 ~~~i~~~i~~A~~~~~~l~~~l~~ 80 (84)
T d2je6a2 57 LQDIDQAENTARSTAVKLLEELKK 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999988888776
No 5
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.36 E-value=79 Score=15.68 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 028593 55 LSFVSNVLLLLVAILFFWGKSA 76 (207)
Q Consensus 55 is~~s~~~l~~l~~~fl~~~~~ 76 (207)
+++.||++++.-+..|-.+...
T Consensus 2 lti~syvglligal~~tlgiyl 23 (32)
T d1q90l_ 2 LTITSYVGLLIGALVFTLGIYL 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 5778888887766666444443
No 6
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=14.02 E-value=2.3e+02 Score=20.80 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028593 142 VFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPL 198 (207)
Q Consensus 142 ~~s~~tLl~i~~~~~FtvP~lY~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~kip~ 198 (207)
|+|.-....++-.++=.+-.++-.|++.+.+-.++...++++.-+.+++ .+.++|.
T Consensus 135 Wldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~-~l~~~~~ 190 (289)
T d1pq4a_ 135 WLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQ-ILQPLPQ 190 (289)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCSC
T ss_pred ecccccHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhHHHHHHHHHH-HhccccC
Confidence 7777777777888888888999999999999999999999888888887 5556664
No 7
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.98 E-value=89 Score=19.28 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028593 167 QDHIDEKLCKIQRVIQMQYRKIDESLLKK 195 (207)
Q Consensus 167 q~~ID~~v~~~~~~~~~~~~~~~~k~~~k 195 (207)
.++|++.++.+....++..+.+++ .+++
T Consensus 58 ~~~i~~~i~~A~~~~~el~~~l~~-~L~~ 85 (94)
T d2nn6e2 58 PESIFEMMETGKRVGKVLHASLQS-VVHK 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 578899999999998888887776 4444
No 8
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=11.80 E-value=96 Score=18.93 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=17.7
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHH
Q 028593 165 KFQDHIDEKLCKIQRVIQMQYRKIDE 190 (207)
Q Consensus 165 ~~q~~ID~~v~~~~~~~~~~~~~~~~ 190 (207)
++-.+||..+++.++.++ .+++++.
T Consensus 50 ~~l~qid~ev~kLK~~Id-aLNKiKk 74 (79)
T d1zkea1 50 AFFTQLSEEVERLKELIN-ALNKIKK 74 (79)
T ss_dssp GGHHHHHHHHHHHHHHHH-HHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445689999999998885 4455553
No 9
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.18 E-value=1.4e+02 Score=17.44 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=25.9
Q ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028593 88 DLEISDQSVVKAADEIQVWVNHALSIARDI 117 (207)
Q Consensus 88 ~~~isee~v~~~~~~v~~~in~~l~~~~~i 117 (207)
.+.++++.+-+++..-.+.+|..+..+++-
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 566889999999999999999999988764
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.83 E-value=1.2e+02 Score=18.98 Aligned_cols=34 Identities=9% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028593 161 VLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLK 194 (207)
Q Consensus 161 ~lY~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~ 194 (207)
.+.++|++.+++++..-.+..=.+.+++..+++.
T Consensus 6 ~~~~~Y~~iL~~Yl~~~~E~~Ly~~~~fsre~ie 39 (84)
T d1w53a_ 6 VIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3567889999988855444433344555555543
Done!